AutoCloner

Multiple sequence alignment - TraesCS6A01G363800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G363800	chr6A	100.000	3437	0	0	1	3437	592617348	592620784	0.000000e+00	6348.0
1	TraesCS6A01G363800	chr6A	85.185	2268	268	37	814	3033	592458964	592456717	0.000000e+00	2265.0
2	TraesCS6A01G363800	chr6A	86.144	1761	204	21	834	2556	592464450	592462692	0.000000e+00	1864.0
3	TraesCS6A01G363800	chr6A	85.190	1445	211	3	955	2398	592613331	592611889	0.000000e+00	1480.0
4	TraesCS6A01G363800	chr6A	80.986	1846	296	35	814	2627	592469163	592467341	0.000000e+00	1413.0
5	TraesCS6A01G363800	chr6A	78.605	215	33	9	278	481	592465589	592465377	2.780000e-26	130.0
6	TraesCS6A01G363800	chr6A	94.737	57	3	0	408	464	592464803	592464747	4.720000e-14	89.8
7	TraesCS6A01G363800	chr6D	94.453	3353	124	23	108	3435	445978094	445981409	0.000000e+00	5105.0
8	TraesCS6A01G363800	chr6D	95.768	2812	83	13	108	2910	445963599	445966383	0.000000e+00	4501.0
9	TraesCS6A01G363800	chr6D	84.716	2290	263	35	796	3033	445788983	445786729	0.000000e+00	2209.0
10	TraesCS6A01G363800	chr6D	85.196	2121	233	33	886	2946	445778872	445776773	0.000000e+00	2102.0
11	TraesCS6A01G363800	chr6D	88.413	1588	178	6	835	2418	411470953	411469368	0.000000e+00	1908.0
12	TraesCS6A01G363800	chr6D	81.461	1834	297	26	814	2624	445793855	445792042	0.000000e+00	1463.0
13	TraesCS6A01G363800	chr6D	83.984	1230	192	5	1162	2389	445960057	445958831	0.000000e+00	1175.0
14	TraesCS6A01G363800	chr6D	91.480	446	26	5	2945	3381	445966383	445966825	1.360000e-168	603.0
15	TraesCS6A01G363800	chr6D	76.680	253	36	14	243	481	445790025	445789782	6.030000e-23	119.0
16	TraesCS6A01G363800	chr6D	85.217	115	11	2	3276	3388	445970309	445970419	2.800000e-21	113.0
17	TraesCS6A01G363800	chr6B	83.877	2053	241	38	1047	3021	672462674	672460634	0.000000e+00	1875.0
18	TraesCS6A01G363800	chr6B	91.569	1281	85	11	229	1497	673875616	673876885	0.000000e+00	1746.0
19	TraesCS6A01G363800	chr6B	80.759	1845	306	28	814	2632	672499489	672497668	0.000000e+00	1395.0
20	TraesCS6A01G363800	chr6B	88.515	653	51	8	2277	2905	673897941	673898593	0.000000e+00	769.0
21	TraesCS6A01G363800	chr6B	79.204	452	63	21	2562	2992	672408751	672408310	5.610000e-73	285.0
22	TraesCS6A01G363800	chr6B	90.526	190	11	4	3131	3315	673918290	673918477	9.530000e-61	244.0
23	TraesCS6A01G363800	chr6B	82.524	206	22	3	845	1050	672472858	672472667	5.900000e-38	169.0
24	TraesCS6A01G363800	chr6B	80.519	231	35	6	302	524	672493432	672493204	5.900000e-38	169.0
25	TraesCS6A01G363800	chr6B	94.898	98	4	1	107	203	673855099	673855196	5.940000e-33	152.0
26	TraesCS6A01G363800	chr6B	87.500	120	13	2	2704	2821	672497310	672497191	1.660000e-28	137.0
27	TraesCS6A01G363800	chr6B	76.772	254	42	8	2901	3144	673918007	673918253	3.600000e-25	126.0
28	TraesCS6A01G363800	chr6B	78.241	216	31	11	278	481	672493952	672493741	1.300000e-24	124.0
29	TraesCS6A01G363800	chr6B	90.588	85	8	0	2728	2812	673337158	673337074	2.800000e-21	113.0
30	TraesCS6A01G363800	chr3A	76.646	638	121	25	997	1620	57904719	57905342	9.200000e-86	327.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G363800	chr6A	592617348	592620784	3436	False	6348.000000	6348	100.000000	1	3437	1	chr6A.!!$F1	3436
1	TraesCS6A01G363800	chr6A	592611889	592613331	1442	True	1480.000000	1480	85.190000	955	2398	1	chr6A.!!$R1	1443
2	TraesCS6A01G363800	chr6A	592456717	592469163	12446	True	1152.360000	2265	85.131400	278	3033	5	chr6A.!!$R2	2755
3	TraesCS6A01G363800	chr6D	445978094	445981409	3315	False	5105.000000	5105	94.453000	108	3435	1	chr6D.!!$F1	3327
4	TraesCS6A01G363800	chr6D	445776773	445778872	2099	True	2102.000000	2102	85.196000	886	2946	1	chr6D.!!$R2	2060
5	TraesCS6A01G363800	chr6D	411469368	411470953	1585	True	1908.000000	1908	88.413000	835	2418	1	chr6D.!!$R1	1583
6	TraesCS6A01G363800	chr6D	445963599	445970419	6820	False	1739.000000	4501	90.821667	108	3388	3	chr6D.!!$F2	3280
7	TraesCS6A01G363800	chr6D	445786729	445793855	7126	True	1263.666667	2209	80.952333	243	3033	3	chr6D.!!$R4	2790
8	TraesCS6A01G363800	chr6D	445958831	445960057	1226	True	1175.000000	1175	83.984000	1162	2389	1	chr6D.!!$R3	1227
9	TraesCS6A01G363800	chr6B	672460634	672462674	2040	True	1875.000000	1875	83.877000	1047	3021	1	chr6B.!!$R2	1974
10	TraesCS6A01G363800	chr6B	673875616	673876885	1269	False	1746.000000	1746	91.569000	229	1497	1	chr6B.!!$F2	1268
11	TraesCS6A01G363800	chr6B	673897941	673898593	652	False	769.000000	769	88.515000	2277	2905	1	chr6B.!!$F3	628
12	TraesCS6A01G363800	chr6B	672493204	672499489	6285	True	456.250000	1395	81.754750	278	2821	4	chr6B.!!$R5	2543
13	TraesCS6A01G363800	chr3A	57904719	57905342	623	False	327.000000	327	76.646000	997	1620	1	chr3A.!!$F1	623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
990	5555	0.890542	CTGCCCAAGTTGTGCAGCTA	60.891	55.0	24.28	0.0	45.09	3.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2582	12679	1.203928	CAGATCTCGCGCTACCAAAG	58.796	55.0	5.56	0.0	0.0	2.77	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
98	99	8.744568	AAAAACTGAGAGAGAATGAGAAACTT	57.255	30.769	0.00	0.00	0.00	2.66
100	101	7.961325	AACTGAGAGAGAATGAGAAACTTTC	57.039	36.000	0.00	0.00	34.29	2.62
101	102	7.301868	ACTGAGAGAGAATGAGAAACTTTCT	57.698	36.000	3.55	3.55	42.85	2.52
103	104	8.210265	ACTGAGAGAGAATGAGAAACTTTCTTT	58.790	33.333	5.49	0.00	41.13	2.52
300	4054	3.934391	CTCGCCGCGGAGGTTTCTT	62.934	63.158	33.48	0.00	43.70	2.52
344	4674	3.470888	CCGTTCCCGCCCAGATCT	61.471	66.667	0.00	0.00	0.00	2.75
350	4680	3.237741	CCGCCCAGATCTCCCCTC	61.238	72.222	0.00	0.00	0.00	4.30
355	4685	2.283809	CAGATCTCCCCTCCCGGT	59.716	66.667	0.00	0.00	0.00	5.28
387	4717	2.657237	CTGGTTCGTCGGCTCCTT	59.343	61.111	0.00	0.00	0.00	3.36
446	4935	4.021925	GGTTGAGCCAGCCGAGGT	62.022	66.667	0.00	0.00	37.17	3.85
571	5060	5.700402	TCCTAGAGGAAATAGCTTGCTTT	57.300	39.130	0.00	0.00	42.18	3.51
572	5061	6.808321	TCCTAGAGGAAATAGCTTGCTTTA	57.192	37.500	0.00	0.00	42.18	1.85
573	5062	7.195374	TCCTAGAGGAAATAGCTTGCTTTAA	57.805	36.000	0.00	0.00	42.18	1.52
605	5094	3.861276	AAAACCTGTTATTAAGCGCCC	57.139	42.857	2.29	0.00	0.00	6.13
612	5101	4.819630	CCTGTTATTAAGCGCCCAGAAATA	59.180	41.667	2.29	0.00	0.00	1.40
781	5279	3.615496	GCTTTTGCATTAGGTGATTGCTG	59.385	43.478	0.00	0.00	46.58	4.41
832	5359	6.423905	TGTTCCAAGATAAGCGCATAATAGAC	59.576	38.462	11.47	0.00	0.00	2.59
990	5555	0.890542	CTGCCCAAGTTGTGCAGCTA	60.891	55.000	24.28	0.00	45.09	3.32
1063	5628	4.163078	AGAGGATTACCCAGACAAGTGATG	59.837	45.833	0.00	0.00	37.41	3.07
1188	5753	3.032459	GGTATCTCTCTTCTCCCGGTTT	58.968	50.000	0.00	0.00	0.00	3.27
1791	6382	2.170166	CTGGGGAAGTGCAAAGCATTA	58.830	47.619	0.00	0.00	41.91	1.90
1879	6470	2.032799	TGCAGCAACCTTAAAACTGTCG	59.967	45.455	0.00	0.00	0.00	4.35
2061	12125	0.883833	AAGAGGGCATTTTGACGCTG	59.116	50.000	0.00	0.00	0.00	5.18
2155	12219	1.000359	TCATCCTCACCGCTCCTGA	60.000	57.895	0.00	0.00	0.00	3.86
2582	12679	3.620821	GGCTTCAGATGTTCTAGACTTGC	59.379	47.826	0.00	0.00	0.00	4.01
2822	13226	5.073437	ACCTGGAGATTAGATCTGCTAGT	57.927	43.478	5.18	5.44	46.53	2.57
2853	13273	2.371841	ACAGTGGTTCCTGCTCATAACA	59.628	45.455	0.00	0.00	35.83	2.41
2909	13379	6.463995	AACAAAGCAAAGAGGTTATGAACA	57.536	33.333	0.00	0.00	36.83	3.18
2910	13380	6.076981	ACAAAGCAAAGAGGTTATGAACAG	57.923	37.500	0.00	0.00	36.83	3.16
2911	13381	5.594317	ACAAAGCAAAGAGGTTATGAACAGT	59.406	36.000	0.00	0.00	36.83	3.55
2912	13382	5.695851	AAGCAAAGAGGTTATGAACAGTG	57.304	39.130	0.00	0.00	35.88	3.66
2913	13383	4.973168	AGCAAAGAGGTTATGAACAGTGA	58.027	39.130	0.00	0.00	0.00	3.41
2914	13384	5.376625	AGCAAAGAGGTTATGAACAGTGAA	58.623	37.500	0.00	0.00	0.00	3.18
2915	13385	5.239525	AGCAAAGAGGTTATGAACAGTGAAC	59.760	40.000	0.00	0.00	0.00	3.18
2916	13386	5.008613	GCAAAGAGGTTATGAACAGTGAACA	59.991	40.000	0.00	0.00	0.00	3.18
2917	13387	6.662616	CAAAGAGGTTATGAACAGTGAACAG	58.337	40.000	0.00	0.00	0.00	3.16
2918	13388	5.808366	AGAGGTTATGAACAGTGAACAGA	57.192	39.130	0.00	0.00	0.00	3.41
2919	13389	6.365970	AGAGGTTATGAACAGTGAACAGAT	57.634	37.500	0.00	0.00	0.00	2.90
2920	13390	6.169094	AGAGGTTATGAACAGTGAACAGATG	58.831	40.000	0.00	0.00	0.00	2.90
2921	13391	4.697352	AGGTTATGAACAGTGAACAGATGC	59.303	41.667	0.00	0.00	0.00	3.91
2922	13392	4.142600	GGTTATGAACAGTGAACAGATGCC	60.143	45.833	0.00	0.00	0.00	4.40
2923	13393	2.936919	TGAACAGTGAACAGATGCCT	57.063	45.000	0.00	0.00	0.00	4.75
2924	13394	3.213206	TGAACAGTGAACAGATGCCTT	57.787	42.857	0.00	0.00	0.00	4.35
2925	13395	3.554934	TGAACAGTGAACAGATGCCTTT	58.445	40.909	0.00	0.00	0.00	3.11
2926	13396	3.953612	TGAACAGTGAACAGATGCCTTTT	59.046	39.130	0.00	0.00	0.00	2.27
2927	13397	4.402155	TGAACAGTGAACAGATGCCTTTTT	59.598	37.500	0.00	0.00	0.00	1.94
2928	13398	4.574599	ACAGTGAACAGATGCCTTTTTC	57.425	40.909	0.00	0.00	0.00	2.29
2929	13399	4.210331	ACAGTGAACAGATGCCTTTTTCT	58.790	39.130	0.00	0.00	0.00	2.52
2930	13400	4.276926	ACAGTGAACAGATGCCTTTTTCTC	59.723	41.667	0.00	0.00	0.00	2.87
2931	13401	4.276678	CAGTGAACAGATGCCTTTTTCTCA	59.723	41.667	0.00	0.00	0.00	3.27
2932	13402	4.276926	AGTGAACAGATGCCTTTTTCTCAC	59.723	41.667	0.00	0.00	0.00	3.51
2933	13403	4.036734	GTGAACAGATGCCTTTTTCTCACA	59.963	41.667	0.00	0.00	0.00	3.58
2934	13404	4.036734	TGAACAGATGCCTTTTTCTCACAC	59.963	41.667	0.00	0.00	0.00	3.82
2935	13405	3.825328	ACAGATGCCTTTTTCTCACACT	58.175	40.909	0.00	0.00	0.00	3.55
2936	13406	3.567164	ACAGATGCCTTTTTCTCACACTG	59.433	43.478	0.00	0.00	0.00	3.66
2937	13407	3.817084	CAGATGCCTTTTTCTCACACTGA	59.183	43.478	0.00	0.00	0.00	3.41
2938	13408	4.276678	CAGATGCCTTTTTCTCACACTGAA	59.723	41.667	0.00	0.00	0.00	3.02
2939	13409	4.276926	AGATGCCTTTTTCTCACACTGAAC	59.723	41.667	0.00	0.00	0.00	3.18
2940	13410	3.351740	TGCCTTTTTCTCACACTGAACA	58.648	40.909	0.00	0.00	0.00	3.18
2941	13411	3.953612	TGCCTTTTTCTCACACTGAACAT	59.046	39.130	0.00	0.00	0.00	2.71
2942	13412	5.129634	TGCCTTTTTCTCACACTGAACATA	58.870	37.500	0.00	0.00	0.00	2.29
2943	13413	5.769662	TGCCTTTTTCTCACACTGAACATAT	59.230	36.000	0.00	0.00	0.00	1.78
2999	13523	4.508124	CGGCAGAGAAAACAGATATGGTAC	59.492	45.833	0.00	0.00	0.00	3.34
3072	13596	3.633525	TGGCCATAGCAAATGTCTTCATC	59.366	43.478	0.00	0.00	42.56	2.92
3076	13600	6.039717	GGCCATAGCAAATGTCTTCATCTAAA	59.960	38.462	0.00	0.00	42.56	1.85
3115	13639	1.333791	GCGTTACACACAAGAACCAGC	60.334	52.381	0.00	0.00	0.00	4.85
3138	13662	0.462047	CTGCCGGCTAATTCCTTCGT	60.462	55.000	29.70	0.00	0.00	3.85
3260	13929	9.102757	GTTACAGATCAGCTCATGAAGATAAAA	57.897	33.333	0.00	0.00	42.53	1.52
3265	13934	5.121811	TCAGCTCATGAAGATAAAAGAGGC	58.878	41.667	0.00	0.00	34.02	4.70
3266	13935	4.880120	CAGCTCATGAAGATAAAAGAGGCA	59.120	41.667	0.00	0.00	0.00	4.75
3326	15912	3.570926	CTTTGACAAGCATGCACAGAT	57.429	42.857	21.98	0.00	0.00	2.90
3369	15955	4.264253	TCAAGTATGCCTGATTCCACTTG	58.736	43.478	6.03	6.03	42.55	3.16
3382	15968	3.921119	TCCACTTGCAATGTTAAGCAG	57.079	42.857	0.00	0.00	42.39	4.24
3391	17055	5.009631	TGCAATGTTAAGCAGTACATCCTT	58.990	37.500	0.00	0.00	35.51	3.36
3400	17064	2.114616	CAGTACATCCTTGCTCTCCCT	58.885	52.381	0.00	0.00	0.00	4.20

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
73	74	8.744568	AAGTTTCTCATTCTCTCTCAGTTTTT	57.255	30.769	0.00	0.00	0.00	1.94
75	76	8.210265	AGAAAGTTTCTCATTCTCTCTCAGTTT	58.790	33.333	12.50	0.00	34.07	2.66
76	77	7.734942	AGAAAGTTTCTCATTCTCTCTCAGTT	58.265	34.615	12.50	0.00	34.07	3.16
78	79	8.606040	AAAGAAAGTTTCTCATTCTCTCTCAG	57.394	34.615	18.28	0.00	39.61	3.35
103	104	6.429791	TGTTTCTCATTCGTGTCTCAAAAA	57.570	33.333	0.00	0.00	0.00	1.94
106	107	6.429624	CAAATGTTTCTCATTCGTGTCTCAA	58.570	36.000	0.00	0.00	44.85	3.02
109	110	5.049405	GTCCAAATGTTTCTCATTCGTGTCT	60.049	40.000	0.00	0.00	44.85	3.41
111	112	4.821805	AGTCCAAATGTTTCTCATTCGTGT	59.178	37.500	0.00	0.00	44.85	4.49
112	113	5.362556	AGTCCAAATGTTTCTCATTCGTG	57.637	39.130	0.00	0.00	44.85	4.35
113	114	6.348540	GCTAAGTCCAAATGTTTCTCATTCGT	60.349	38.462	0.00	0.00	44.85	3.85
241	242	4.430423	CTTTCACTCGCGGCGTGC	62.430	66.667	22.90	0.00	41.47	5.34
257	258	2.564721	GGCAAAGCAAACCCTCGCT	61.565	57.895	0.00	0.00	41.20	4.93
300	4054	2.933287	AGTGGGTGGATTGGGCGA	60.933	61.111	0.00	0.00	0.00	5.54
369	4699	3.591254	AAGGAGCCGACGAACCAGC	62.591	63.158	0.00	0.00	0.00	4.85
387	4717	0.465097	GACCCAGATCCGTACCTCGA	60.465	60.000	0.00	0.00	42.86	4.04
446	4935	2.037121	TCAAGTGGAAGAATCGACAGCA	59.963	45.455	0.00	0.00	36.81	4.41
605	5094	5.821470	ACTCACATCTGCAAGGATATTTCTG	59.179	40.000	0.00	0.00	0.00	3.02
612	5101	3.008813	ACTGAACTCACATCTGCAAGGAT	59.991	43.478	0.00	0.00	0.00	3.24
781	5279	4.563976	CACCAAATTATGTGCTTAGCTTGC	59.436	41.667	5.60	0.00	0.00	4.01
786	5284	6.500684	ACAGACACCAAATTATGTGCTTAG	57.499	37.500	7.08	0.04	35.90	2.18
1063	5628	5.699458	TCGACACAAGGGAAAGAGAATTAAC	59.301	40.000	0.00	0.00	0.00	2.01
1188	5753	5.576563	TCTCTACTTTCACCAAATTGGGA	57.423	39.130	17.27	7.95	43.37	4.37
1791	6382	5.334421	ACATACTCCAGGTAAAGTGTCTCT	58.666	41.667	0.00	0.00	33.74	3.10
1879	6470	1.446966	GAGGCCTGAGTCGAAGTGC	60.447	63.158	12.00	0.00	0.00	4.40
2061	12125	3.546815	CGCGAATTGGACAAGATTGGATC	60.547	47.826	0.00	0.00	0.00	3.36
2439	12521	1.817099	CTGGATTCAGGGCGACAGC	60.817	63.158	0.00	0.00	37.36	4.40
2582	12679	1.203928	CAGATCTCGCGCTACCAAAG	58.796	55.000	5.56	0.00	0.00	2.77
2822	13226	4.518970	GCAGGAACCACTGTAAAGAAATGA	59.481	41.667	0.00	0.00	40.59	2.57
2853	13273	2.849880	GCCATGCGTTGTGTTGATAT	57.150	45.000	0.00	0.00	0.00	1.63
2909	13379	4.276926	GTGAGAAAAAGGCATCTGTTCACT	59.723	41.667	0.00	0.00	0.00	3.41
2910	13380	4.036734	TGTGAGAAAAAGGCATCTGTTCAC	59.963	41.667	0.00	0.00	0.00	3.18
2911	13381	4.036734	GTGTGAGAAAAAGGCATCTGTTCA	59.963	41.667	0.00	0.00	0.00	3.18
2912	13382	4.276926	AGTGTGAGAAAAAGGCATCTGTTC	59.723	41.667	0.00	0.00	0.00	3.18
2913	13383	4.037208	CAGTGTGAGAAAAAGGCATCTGTT	59.963	41.667	0.00	0.00	0.00	3.16
2914	13384	3.567164	CAGTGTGAGAAAAAGGCATCTGT	59.433	43.478	0.00	0.00	0.00	3.41
2915	13385	3.817084	TCAGTGTGAGAAAAAGGCATCTG	59.183	43.478	0.00	0.00	0.00	2.90
2916	13386	4.090761	TCAGTGTGAGAAAAAGGCATCT	57.909	40.909	0.00	0.00	0.00	2.90
2917	13387	4.036734	TGTTCAGTGTGAGAAAAAGGCATC	59.963	41.667	0.00	0.00	0.00	3.91
2918	13388	3.953612	TGTTCAGTGTGAGAAAAAGGCAT	59.046	39.130	0.00	0.00	0.00	4.40
2919	13389	3.351740	TGTTCAGTGTGAGAAAAAGGCA	58.648	40.909	0.00	0.00	0.00	4.75
2920	13390	4.574599	ATGTTCAGTGTGAGAAAAAGGC	57.425	40.909	0.00	0.00	0.00	4.35
2928	13398	9.965824	TGTACATGTATATATGTTCAGTGTGAG	57.034	33.333	18.75	0.00	41.31	3.51
2931	13401	9.764363	CCTTGTACATGTATATATGTTCAGTGT	57.236	33.333	18.75	0.00	41.31	3.55
2932	13402	9.764363	ACCTTGTACATGTATATATGTTCAGTG	57.236	33.333	18.75	15.39	41.31	3.66
2933	13403	9.764363	CACCTTGTACATGTATATATGTTCAGT	57.236	33.333	18.75	12.34	41.31	3.41
2934	13404	9.981114	TCACCTTGTACATGTATATATGTTCAG	57.019	33.333	18.75	11.82	41.31	3.02
2943	13413	9.197306	ACAGAACTATCACCTTGTACATGTATA	57.803	33.333	9.18	3.08	0.00	1.47
2999	13523	2.505628	AGTGATATGCTGAGTCGCTG	57.494	50.000	8.13	0.00	31.98	5.18
3072	13596	5.221126	GCCTCTGATGCCCTTACAATTTTAG	60.221	44.000	0.00	0.00	0.00	1.85
3076	13600	2.659428	GCCTCTGATGCCCTTACAATT	58.341	47.619	0.00	0.00	0.00	2.32
3129	13653	6.204882	CCAAAGAGTTTCTGTTACGAAGGAAT	59.795	38.462	0.00	0.00	0.00	3.01
3138	13662	4.410883	TCTCCACCCAAAGAGTTTCTGTTA	59.589	41.667	0.00	0.00	0.00	2.41
3260	13929	3.584733	AAGGTTCAGAAAACTGCCTCT	57.415	42.857	0.00	0.00	31.03	3.69
3265	13934	3.491447	CCTGGCAAAGGTTCAGAAAACTG	60.491	47.826	0.00	0.00	41.74	3.16
3266	13935	2.695147	CCTGGCAAAGGTTCAGAAAACT	59.305	45.455	0.00	0.00	41.74	2.66
3326	15912	3.914426	GGAATTACTTCCCTCTGCTGA	57.086	47.619	0.28	0.00	44.56	4.26
3369	15955	5.335127	CAAGGATGTACTGCTTAACATTGC	58.665	41.667	0.00	0.00	36.48	3.56
3382	15968	1.474143	GCAGGGAGAGCAAGGATGTAC	60.474	57.143	0.00	0.00	0.00	2.90
3400	17064	2.106938	GACGATCGATGGCTGGCA	59.893	61.111	24.34	6.31	0.00	4.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.