Multiple sequence alignment - TraesCS6A01G363700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G363700 chr6A 100.000 3443 0 0 1 3443 592614286 592610844 0.000000e+00 6359.0
1 TraesCS6A01G363700 chr6A 86.819 1487 195 1 933 2418 556038365 556036879 0.000000e+00 1659.0
2 TraesCS6A01G363700 chr6A 86.626 1473 194 3 948 2418 592458834 592457363 0.000000e+00 1626.0
3 TraesCS6A01G363700 chr6A 85.306 1436 208 3 956 2389 592618302 592619736 0.000000e+00 1480.0
4 TraesCS6A01G363700 chr6D 94.169 1715 62 17 1159 2870 445960060 445958381 0.000000e+00 2579.0
5 TraesCS6A01G363700 chr6D 87.626 1487 183 1 933 2418 411470854 411469368 0.000000e+00 1725.0
6 TraesCS6A01G363700 chr6D 87.569 1448 178 2 975 2421 445788803 445787357 0.000000e+00 1676.0
7 TraesCS6A01G363700 chr6D 85.876 1416 198 2 975 2389 445964462 445965876 0.000000e+00 1506.0
8 TraesCS6A01G363700 chr6D 87.687 1202 128 5 735 1916 445973668 445972467 0.000000e+00 1382.0
9 TraesCS6A01G363700 chr6D 84.026 457 35 20 259 677 445960514 445960058 4.140000e-109 405.0
10 TraesCS6A01G363700 chr6D 81.724 290 33 8 3164 3439 445958362 445958079 1.240000e-54 224.0
11 TraesCS6A01G363700 chr6D 93.750 112 6 1 625 735 445975217 445975106 2.130000e-37 167.0
12 TraesCS6A01G363700 chr6D 79.235 183 13 10 1 175 445975396 445975231 1.690000e-18 104.0
13 TraesCS6A01G363700 chr6D 85.938 64 9 0 3295 3358 445822742 445822805 6.170000e-08 69.4
14 TraesCS6A01G363700 chr6B 86.358 1488 196 6 933 2418 618670154 618668672 0.000000e+00 1616.0
15 TraesCS6A01G363700 chr6B 86.919 1376 180 0 1046 2421 672462675 672461300 0.000000e+00 1544.0
16 TraesCS6A01G363700 chr6B 91.731 387 24 1 515 893 673822743 673822357 6.540000e-147 531.0
17 TraesCS6A01G363700 chr6B 79.775 534 44 19 1 501 673825355 673824853 2.560000e-86 329.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G363700 chr6A 592610844 592614286 3442 True 6359.000000 6359 100.000000 1 3443 1 chr6A.!!$R3 3442
1 TraesCS6A01G363700 chr6A 556036879 556038365 1486 True 1659.000000 1659 86.819000 933 2418 1 chr6A.!!$R1 1485
2 TraesCS6A01G363700 chr6A 592457363 592458834 1471 True 1626.000000 1626 86.626000 948 2418 1 chr6A.!!$R2 1470
3 TraesCS6A01G363700 chr6A 592618302 592619736 1434 False 1480.000000 1480 85.306000 956 2389 1 chr6A.!!$F1 1433
4 TraesCS6A01G363700 chr6D 411469368 411470854 1486 True 1725.000000 1725 87.626000 933 2418 1 chr6D.!!$R1 1485
5 TraesCS6A01G363700 chr6D 445787357 445788803 1446 True 1676.000000 1676 87.569000 975 2421 1 chr6D.!!$R2 1446
6 TraesCS6A01G363700 chr6D 445964462 445965876 1414 False 1506.000000 1506 85.876000 975 2389 1 chr6D.!!$F2 1414
7 TraesCS6A01G363700 chr6D 445958079 445960514 2435 True 1069.333333 2579 86.639667 259 3439 3 chr6D.!!$R3 3180
8 TraesCS6A01G363700 chr6D 445972467 445975396 2929 True 551.000000 1382 86.890667 1 1916 3 chr6D.!!$R4 1915
9 TraesCS6A01G363700 chr6B 618668672 618670154 1482 True 1616.000000 1616 86.358000 933 2418 1 chr6B.!!$R1 1485
10 TraesCS6A01G363700 chr6B 672461300 672462675 1375 True 1544.000000 1544 86.919000 1046 2421 1 chr6B.!!$R2 1375
11 TraesCS6A01G363700 chr6B 673822357 673825355 2998 True 430.000000 531 85.753000 1 893 2 chr6B.!!$R3 892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 623 0.031178 GGTTGCTGCAGTTTGGTCTG 59.969 55.0 16.64 0.0 38.35 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2540 6009 1.895131 GCAATTGGAGTTGGGTCACAT 59.105 47.619 7.72 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.344865 TGTTTGAGGAGCCCGGGC 62.345 66.667 39.29 39.29 42.33 6.13
31 32 0.935196 CCGGGCGTAAATGCTCTTAC 59.065 55.000 0.00 0.00 31.39 2.34
37 38 3.307242 GGCGTAAATGCTCTTACTGACAG 59.693 47.826 0.00 0.00 34.52 3.51
44 45 3.431415 TGCTCTTACTGACAGCTCCTAA 58.569 45.455 1.25 0.00 0.00 2.69
74 75 0.179163 GTTTTCATAGTGCGGCTGCC 60.179 55.000 16.57 9.11 41.78 4.85
87 88 3.509388 GCTGCCGCCGTATAGTATT 57.491 52.632 0.00 0.00 0.00 1.89
88 89 1.068474 GCTGCCGCCGTATAGTATTG 58.932 55.000 0.00 0.00 0.00 1.90
89 90 1.068474 CTGCCGCCGTATAGTATTGC 58.932 55.000 0.00 0.00 0.00 3.56
90 91 0.677288 TGCCGCCGTATAGTATTGCT 59.323 50.000 0.00 0.00 0.00 3.91
91 92 1.887854 TGCCGCCGTATAGTATTGCTA 59.112 47.619 0.00 0.00 0.00 3.49
92 93 2.257034 GCCGCCGTATAGTATTGCTAC 58.743 52.381 0.00 0.00 31.59 3.58
93 94 2.094854 GCCGCCGTATAGTATTGCTACT 60.095 50.000 0.00 0.00 41.19 2.57
94 95 3.499048 CCGCCGTATAGTATTGCTACTG 58.501 50.000 0.00 0.00 38.65 2.74
124 125 2.226674 GTGCTCACTGCTAAAGGGAAAC 59.773 50.000 0.00 0.00 38.07 2.78
127 128 2.480419 CTCACTGCTAAAGGGAAACACG 59.520 50.000 0.00 0.00 38.07 4.49
140 141 3.311596 GGGAAACACGGATGCATAGTAAC 59.688 47.826 0.00 0.00 0.00 2.50
201 217 1.532728 GGACGGAGGCCTCTCTCTA 59.467 63.158 31.36 0.00 39.86 2.43
203 219 1.479757 GGACGGAGGCCTCTCTCTATT 60.480 57.143 31.36 8.64 39.86 1.73
204 220 1.611491 GACGGAGGCCTCTCTCTATTG 59.389 57.143 31.36 13.40 39.86 1.90
205 221 1.215673 ACGGAGGCCTCTCTCTATTGA 59.784 52.381 31.36 0.00 39.86 2.57
208 224 1.618343 GAGGCCTCTCTCTATTGAGCC 59.382 57.143 26.25 0.00 40.03 4.70
209 225 0.684535 GGCCTCTCTCTATTGAGCCC 59.315 60.000 0.00 0.00 40.03 5.19
210 226 0.316841 GCCTCTCTCTATTGAGCCCG 59.683 60.000 0.00 0.00 40.03 6.13
211 227 1.988293 CCTCTCTCTATTGAGCCCGA 58.012 55.000 0.00 0.00 40.03 5.14
212 228 1.611491 CCTCTCTCTATTGAGCCCGAC 59.389 57.143 0.00 0.00 40.03 4.79
213 229 1.611491 CTCTCTCTATTGAGCCCGACC 59.389 57.143 0.00 0.00 40.03 4.79
214 230 0.676736 CTCTCTATTGAGCCCGACCC 59.323 60.000 0.00 0.00 40.03 4.46
215 231 1.107538 TCTCTATTGAGCCCGACCCG 61.108 60.000 0.00 0.00 40.03 5.28
255 271 1.001020 TGCCCAGCAACCCACATAG 60.001 57.895 0.00 0.00 34.76 2.23
275 310 0.926846 GCATCTTCTCTTCTTCGCCG 59.073 55.000 0.00 0.00 0.00 6.46
281 316 2.994995 TCTTCTTCGCCGCTCCCA 60.995 61.111 0.00 0.00 0.00 4.37
316 351 2.928416 CCGCGAGAAGAGGGTTTTT 58.072 52.632 8.23 0.00 36.04 1.94
317 352 0.796927 CCGCGAGAAGAGGGTTTTTC 59.203 55.000 8.23 0.00 36.04 2.29
328 363 0.034476 GGGTTTTTCTCCGAGGTCGT 59.966 55.000 0.00 0.00 37.74 4.34
343 379 2.030562 CGTGCGGAGGTTTCCTGT 59.969 61.111 0.00 0.00 41.67 4.00
364 400 4.388499 CGGCCGCTACACAACCCT 62.388 66.667 14.67 0.00 0.00 4.34
365 401 2.746277 GGCCGCTACACAACCCTG 60.746 66.667 0.00 0.00 0.00 4.45
366 402 2.746277 GCCGCTACACAACCCTGG 60.746 66.667 0.00 0.00 0.00 4.45
371 407 0.109723 GCTACACAACCCTGGACCAA 59.890 55.000 0.00 0.00 0.00 3.67
409 445 4.821589 CGCTCGGTTCCTCCCTGC 62.822 72.222 0.00 0.00 0.00 4.85
446 482 1.560146 GTCGATTCCTTTCCCCCTTCT 59.440 52.381 0.00 0.00 0.00 2.85
447 483 2.026169 GTCGATTCCTTTCCCCCTTCTT 60.026 50.000 0.00 0.00 0.00 2.52
453 489 0.678048 CTTTCCCCCTTCTTCGCAGG 60.678 60.000 0.00 0.00 0.00 4.85
480 516 0.895100 TGATTGAACCAGCCAGCCAC 60.895 55.000 0.00 0.00 0.00 5.01
481 517 1.598701 GATTGAACCAGCCAGCCACC 61.599 60.000 0.00 0.00 0.00 4.61
484 520 4.335647 AACCAGCCAGCCACCTCG 62.336 66.667 0.00 0.00 0.00 4.63
501 537 0.874390 TCGATTGCTGCACTTGGTTC 59.126 50.000 0.00 0.00 0.00 3.62
502 538 0.109597 CGATTGCTGCACTTGGTTCC 60.110 55.000 0.00 0.00 0.00 3.62
505 541 1.108727 TTGCTGCACTTGGTTCCAGG 61.109 55.000 0.00 0.00 0.00 4.45
506 542 2.924105 GCTGCACTTGGTTCCAGGC 61.924 63.158 0.00 3.64 0.00 4.85
507 543 2.594303 TGCACTTGGTTCCAGGCG 60.594 61.111 0.83 0.00 0.00 5.52
508 544 2.281484 GCACTTGGTTCCAGGCGA 60.281 61.111 0.83 0.00 0.00 5.54
509 545 2.328099 GCACTTGGTTCCAGGCGAG 61.328 63.158 0.83 0.00 0.00 5.03
510 546 2.032681 ACTTGGTTCCAGGCGAGC 59.967 61.111 0.83 0.00 0.00 5.03
511 547 2.032528 CTTGGTTCCAGGCGAGCA 59.967 61.111 0.00 0.00 0.00 4.26
512 548 2.281484 TTGGTTCCAGGCGAGCAC 60.281 61.111 0.00 0.00 0.00 4.40
513 549 3.113514 TTGGTTCCAGGCGAGCACA 62.114 57.895 0.00 0.00 0.00 4.57
514 550 2.281484 GGTTCCAGGCGAGCACAA 60.281 61.111 0.00 0.00 0.00 3.33
515 551 1.675641 GGTTCCAGGCGAGCACAAT 60.676 57.895 0.00 0.00 0.00 2.71
516 552 1.244019 GGTTCCAGGCGAGCACAATT 61.244 55.000 0.00 0.00 0.00 2.32
517 553 0.169009 GTTCCAGGCGAGCACAATTC 59.831 55.000 0.00 0.00 0.00 2.17
518 554 0.036732 TTCCAGGCGAGCACAATTCT 59.963 50.000 0.00 0.00 0.00 2.40
519 555 0.036732 TCCAGGCGAGCACAATTCTT 59.963 50.000 0.00 0.00 0.00 2.52
520 556 0.169672 CCAGGCGAGCACAATTCTTG 59.830 55.000 0.00 0.00 0.00 3.02
521 557 0.455633 CAGGCGAGCACAATTCTTGC 60.456 55.000 0.00 0.92 39.62 4.01
522 558 4.465413 GCGAGCACAATTCTTGCC 57.535 55.556 5.15 0.00 41.18 4.52
523 559 1.153958 GCGAGCACAATTCTTGCCC 60.154 57.895 5.15 0.00 41.18 5.36
524 560 1.589716 GCGAGCACAATTCTTGCCCT 61.590 55.000 5.15 0.00 41.18 5.19
525 561 0.169672 CGAGCACAATTCTTGCCCTG 59.830 55.000 5.15 0.00 41.18 4.45
526 562 0.529378 GAGCACAATTCTTGCCCTGG 59.471 55.000 5.15 0.00 41.18 4.45
527 563 0.901580 AGCACAATTCTTGCCCTGGG 60.902 55.000 8.86 8.86 41.18 4.45
528 564 1.187567 GCACAATTCTTGCCCTGGGT 61.188 55.000 15.56 0.00 33.58 4.51
529 565 1.341080 CACAATTCTTGCCCTGGGTT 58.659 50.000 15.56 0.00 0.00 4.11
530 566 1.693606 CACAATTCTTGCCCTGGGTTT 59.306 47.619 15.56 0.00 0.00 3.27
531 567 2.104622 CACAATTCTTGCCCTGGGTTTT 59.895 45.455 15.56 0.00 0.00 2.43
532 568 2.104622 ACAATTCTTGCCCTGGGTTTTG 59.895 45.455 15.56 11.21 0.00 2.44
533 569 2.101640 ATTCTTGCCCTGGGTTTTGT 57.898 45.000 15.56 0.00 0.00 2.83
534 570 1.872773 TTCTTGCCCTGGGTTTTGTT 58.127 45.000 15.56 0.00 0.00 2.83
535 571 1.118838 TCTTGCCCTGGGTTTTGTTG 58.881 50.000 15.56 0.00 0.00 3.33
536 572 1.118838 CTTGCCCTGGGTTTTGTTGA 58.881 50.000 15.56 0.00 0.00 3.18
537 573 1.693606 CTTGCCCTGGGTTTTGTTGAT 59.306 47.619 15.56 0.00 0.00 2.57
538 574 1.799933 TGCCCTGGGTTTTGTTGATT 58.200 45.000 15.56 0.00 0.00 2.57
539 575 1.691434 TGCCCTGGGTTTTGTTGATTC 59.309 47.619 15.56 0.00 0.00 2.52
540 576 1.001974 GCCCTGGGTTTTGTTGATTCC 59.998 52.381 15.56 0.00 0.00 3.01
541 577 2.324541 CCCTGGGTTTTGTTGATTCCA 58.675 47.619 3.97 0.00 0.00 3.53
542 578 2.905736 CCCTGGGTTTTGTTGATTCCAT 59.094 45.455 3.97 0.00 0.00 3.41
543 579 3.306919 CCCTGGGTTTTGTTGATTCCATG 60.307 47.826 3.97 0.00 0.00 3.66
544 580 3.306919 CCTGGGTTTTGTTGATTCCATGG 60.307 47.826 4.97 4.97 0.00 3.66
545 581 2.038295 TGGGTTTTGTTGATTCCATGGC 59.962 45.455 6.96 0.00 0.00 4.40
546 582 2.038295 GGGTTTTGTTGATTCCATGGCA 59.962 45.455 6.96 0.00 0.00 4.92
547 583 3.328505 GGTTTTGTTGATTCCATGGCAG 58.671 45.455 6.96 0.00 0.00 4.85
548 584 3.244181 GGTTTTGTTGATTCCATGGCAGT 60.244 43.478 6.96 0.00 0.00 4.40
549 585 4.021544 GGTTTTGTTGATTCCATGGCAGTA 60.022 41.667 6.96 0.00 0.00 2.74
550 586 5.337491 GGTTTTGTTGATTCCATGGCAGTAT 60.337 40.000 6.96 0.00 0.00 2.12
551 587 5.999205 TTTGTTGATTCCATGGCAGTATT 57.001 34.783 6.96 0.00 0.00 1.89
552 588 4.987408 TGTTGATTCCATGGCAGTATTG 57.013 40.909 6.96 0.00 0.00 1.90
553 589 4.343231 TGTTGATTCCATGGCAGTATTGT 58.657 39.130 6.96 0.00 0.00 2.71
554 590 4.158209 TGTTGATTCCATGGCAGTATTGTG 59.842 41.667 6.96 0.00 0.00 3.33
555 591 3.966979 TGATTCCATGGCAGTATTGTGT 58.033 40.909 6.96 0.00 0.00 3.72
556 592 3.947196 TGATTCCATGGCAGTATTGTGTC 59.053 43.478 6.96 0.00 0.00 3.67
557 593 3.719268 TTCCATGGCAGTATTGTGTCT 57.281 42.857 6.96 0.00 0.00 3.41
558 594 4.835284 TTCCATGGCAGTATTGTGTCTA 57.165 40.909 6.96 0.00 0.00 2.59
559 595 4.406648 TCCATGGCAGTATTGTGTCTAG 57.593 45.455 6.96 0.00 0.00 2.43
560 596 3.134623 TCCATGGCAGTATTGTGTCTAGG 59.865 47.826 6.96 0.00 0.00 3.02
561 597 3.118261 CCATGGCAGTATTGTGTCTAGGT 60.118 47.826 0.00 0.00 0.00 3.08
562 598 3.887621 TGGCAGTATTGTGTCTAGGTC 57.112 47.619 0.00 0.00 0.00 3.85
563 599 2.165641 TGGCAGTATTGTGTCTAGGTCG 59.834 50.000 0.00 0.00 0.00 4.79
564 600 2.165845 GGCAGTATTGTGTCTAGGTCGT 59.834 50.000 0.00 0.00 0.00 4.34
565 601 3.436496 GCAGTATTGTGTCTAGGTCGTC 58.564 50.000 0.00 0.00 0.00 4.20
566 602 3.128938 GCAGTATTGTGTCTAGGTCGTCT 59.871 47.826 0.00 0.00 0.00 4.18
567 603 4.380655 GCAGTATTGTGTCTAGGTCGTCTT 60.381 45.833 0.00 0.00 0.00 3.01
568 604 5.096169 CAGTATTGTGTCTAGGTCGTCTTG 58.904 45.833 0.00 0.00 0.00 3.02
569 605 3.594603 ATTGTGTCTAGGTCGTCTTGG 57.405 47.619 0.00 0.00 0.00 3.61
570 606 1.991121 TGTGTCTAGGTCGTCTTGGT 58.009 50.000 0.00 0.00 0.00 3.67
571 607 2.313317 TGTGTCTAGGTCGTCTTGGTT 58.687 47.619 0.00 0.00 0.00 3.67
572 608 2.035449 TGTGTCTAGGTCGTCTTGGTTG 59.965 50.000 0.00 0.00 0.00 3.77
573 609 1.000506 TGTCTAGGTCGTCTTGGTTGC 59.999 52.381 0.00 0.00 0.00 4.17
574 610 1.272769 GTCTAGGTCGTCTTGGTTGCT 59.727 52.381 0.00 0.00 0.00 3.91
575 611 1.272490 TCTAGGTCGTCTTGGTTGCTG 59.728 52.381 0.00 0.00 0.00 4.41
576 612 0.320421 TAGGTCGTCTTGGTTGCTGC 60.320 55.000 0.00 0.00 0.00 5.25
577 613 1.891919 GGTCGTCTTGGTTGCTGCA 60.892 57.895 0.00 0.00 0.00 4.41
578 614 1.571460 GTCGTCTTGGTTGCTGCAG 59.429 57.895 10.11 10.11 0.00 4.41
579 615 1.146041 TCGTCTTGGTTGCTGCAGT 59.854 52.632 16.64 0.00 0.00 4.40
580 616 0.463654 TCGTCTTGGTTGCTGCAGTT 60.464 50.000 16.64 0.00 0.00 3.16
581 617 0.381801 CGTCTTGGTTGCTGCAGTTT 59.618 50.000 16.64 0.00 0.00 2.66
582 618 1.843992 GTCTTGGTTGCTGCAGTTTG 58.156 50.000 16.64 0.00 0.00 2.93
583 619 0.746063 TCTTGGTTGCTGCAGTTTGG 59.254 50.000 16.64 0.07 0.00 3.28
584 620 0.461135 CTTGGTTGCTGCAGTTTGGT 59.539 50.000 16.64 0.00 0.00 3.67
585 621 0.459489 TTGGTTGCTGCAGTTTGGTC 59.541 50.000 16.64 0.00 0.00 4.02
586 622 0.395586 TGGTTGCTGCAGTTTGGTCT 60.396 50.000 16.64 0.00 0.00 3.85
587 623 0.031178 GGTTGCTGCAGTTTGGTCTG 59.969 55.000 16.64 0.00 38.35 3.51
588 624 0.031178 GTTGCTGCAGTTTGGTCTGG 59.969 55.000 16.64 0.00 36.12 3.86
589 625 0.395586 TTGCTGCAGTTTGGTCTGGT 60.396 50.000 16.64 0.00 36.12 4.00
590 626 0.472044 TGCTGCAGTTTGGTCTGGTA 59.528 50.000 16.64 0.00 36.12 3.25
591 627 1.133945 TGCTGCAGTTTGGTCTGGTAA 60.134 47.619 16.64 0.00 36.12 2.85
592 628 2.162681 GCTGCAGTTTGGTCTGGTAAT 58.837 47.619 16.64 0.00 36.12 1.89
593 629 2.095059 GCTGCAGTTTGGTCTGGTAATG 60.095 50.000 16.64 0.00 36.12 1.90
594 630 1.885887 TGCAGTTTGGTCTGGTAATGC 59.114 47.619 0.00 0.00 36.12 3.56
595 631 2.162681 GCAGTTTGGTCTGGTAATGCT 58.837 47.619 0.00 0.00 36.12 3.79
596 632 3.244735 TGCAGTTTGGTCTGGTAATGCTA 60.245 43.478 0.00 0.00 36.12 3.49
597 633 3.947834 GCAGTTTGGTCTGGTAATGCTAT 59.052 43.478 0.00 0.00 36.12 2.97
598 634 4.399303 GCAGTTTGGTCTGGTAATGCTATT 59.601 41.667 0.00 0.00 36.12 1.73
599 635 5.677091 GCAGTTTGGTCTGGTAATGCTATTG 60.677 44.000 0.00 0.00 36.12 1.90
600 636 4.949856 AGTTTGGTCTGGTAATGCTATTGG 59.050 41.667 0.00 0.00 0.00 3.16
601 637 2.930950 TGGTCTGGTAATGCTATTGGC 58.069 47.619 0.00 0.00 42.22 4.52
602 638 2.509548 TGGTCTGGTAATGCTATTGGCT 59.490 45.455 0.00 0.00 42.39 4.75
603 639 3.142174 GGTCTGGTAATGCTATTGGCTC 58.858 50.000 0.00 0.00 42.39 4.70
604 640 3.433598 GGTCTGGTAATGCTATTGGCTCA 60.434 47.826 0.00 0.00 42.39 4.26
605 641 4.392940 GTCTGGTAATGCTATTGGCTCAT 58.607 43.478 0.00 0.00 42.39 2.90
606 642 4.823989 GTCTGGTAATGCTATTGGCTCATT 59.176 41.667 0.00 0.00 42.39 2.57
607 643 5.300286 GTCTGGTAATGCTATTGGCTCATTT 59.700 40.000 0.00 0.00 42.39 2.32
608 644 6.486657 GTCTGGTAATGCTATTGGCTCATTTA 59.513 38.462 0.00 0.00 42.39 1.40
609 645 7.175641 GTCTGGTAATGCTATTGGCTCATTTAT 59.824 37.037 0.00 0.00 42.39 1.40
610 646 7.175467 TCTGGTAATGCTATTGGCTCATTTATG 59.825 37.037 0.00 0.00 42.39 1.90
611 647 6.777091 TGGTAATGCTATTGGCTCATTTATGT 59.223 34.615 0.00 0.00 42.39 2.29
612 648 7.941790 TGGTAATGCTATTGGCTCATTTATGTA 59.058 33.333 0.00 0.00 42.39 2.29
613 649 8.960591 GGTAATGCTATTGGCTCATTTATGTAT 58.039 33.333 0.00 0.00 42.39 2.29
614 650 9.778993 GTAATGCTATTGGCTCATTTATGTATG 57.221 33.333 0.00 0.00 42.39 2.39
615 651 8.640063 AATGCTATTGGCTCATTTATGTATGA 57.360 30.769 0.00 0.00 42.39 2.15
616 652 8.640063 ATGCTATTGGCTCATTTATGTATGAA 57.360 30.769 0.00 0.00 42.39 2.57
617 653 7.874940 TGCTATTGGCTCATTTATGTATGAAC 58.125 34.615 0.00 0.00 42.39 3.18
618 654 7.501892 TGCTATTGGCTCATTTATGTATGAACA 59.498 33.333 0.00 0.00 42.39 3.18
619 655 8.517878 GCTATTGGCTCATTTATGTATGAACAT 58.482 33.333 0.00 0.00 42.52 2.71
620 656 9.836076 CTATTGGCTCATTTATGTATGAACATG 57.164 33.333 1.34 0.00 45.99 3.21
621 657 6.638096 TGGCTCATTTATGTATGAACATGG 57.362 37.500 0.00 0.00 45.99 3.66
622 658 5.535783 TGGCTCATTTATGTATGAACATGGG 59.464 40.000 0.00 0.00 45.99 4.00
623 659 5.536161 GGCTCATTTATGTATGAACATGGGT 59.464 40.000 0.00 0.00 45.99 4.51
634 670 2.291735 TGAACATGGGTGGAATCTGCAT 60.292 45.455 0.00 0.00 0.00 3.96
645 682 0.994247 AATCTGCATGGGTGGACAGA 59.006 50.000 0.00 0.00 42.89 3.41
646 683 0.254178 ATCTGCATGGGTGGACAGAC 59.746 55.000 0.00 0.00 41.63 3.51
648 685 0.675837 CTGCATGGGTGGACAGACTG 60.676 60.000 0.00 0.00 31.67 3.51
672 709 3.241067 TCGTTAGTAGCACATGTTCCC 57.759 47.619 0.00 0.00 0.00 3.97
687 724 0.957395 TTCCCGAGCGTCTACGAGTT 60.957 55.000 6.71 0.00 43.02 3.01
774 2249 2.776536 AGATAGAAAGAGGGTGCTGCAT 59.223 45.455 5.27 0.00 0.00 3.96
811 2286 2.650297 GTGAAACAAATTGAGTACGCGC 59.350 45.455 5.73 0.00 36.32 6.86
845 2320 5.258051 TGACCCAGTTTTCAGTTAGTGTTT 58.742 37.500 0.00 0.00 0.00 2.83
850 2325 6.640907 CCCAGTTTTCAGTTAGTGTTTATTGC 59.359 38.462 0.00 0.00 0.00 3.56
864 2339 5.448162 GTGTTTATTGCGAAGATTAGCGTTC 59.552 40.000 0.00 0.00 35.87 3.95
891 2366 7.395489 AGAGCCTCATCAATGTTTTCTTTACAT 59.605 33.333 0.00 0.00 37.82 2.29
969 2457 3.044059 GCACCCTGTCGAGCATTGC 62.044 63.158 0.00 0.00 0.00 3.56
1095 2584 2.091112 CCTCGTGTCGAAGCAGCTG 61.091 63.158 10.11 10.11 34.74 4.24
1110 2599 4.662961 CTGTGCACCGTCGAGGCA 62.663 66.667 15.69 6.68 46.52 4.75
1149 2645 1.098712 GTGTTGGCCGTGGACTCAAA 61.099 55.000 0.00 0.00 0.00 2.69
1153 2649 1.122632 TGGCCGTGGACTCAAACCTA 61.123 55.000 0.00 0.00 0.00 3.08
1321 3180 4.074259 TGATCTTGCTTTAAGCTTCTGCA 58.926 39.130 18.20 9.57 42.97 4.41
1401 3260 1.526917 GCTGAACCACACACCAGCT 60.527 57.895 0.00 0.00 46.04 4.24
1472 3331 2.036733 CGGTTCTCCACCTTGTTGACTA 59.963 50.000 0.00 0.00 44.69 2.59
2187 5625 2.146342 CTCGTGAATTGCAGGTCTGTT 58.854 47.619 0.00 0.00 34.14 3.16
2315 5784 2.172505 TGCAGAAGTTGGAGTCCTTGAA 59.827 45.455 11.33 0.00 0.00 2.69
2475 5944 4.094830 TGATTCAGGTGCTGCATATGAT 57.905 40.909 16.98 9.69 0.00 2.45
2476 5945 3.818773 TGATTCAGGTGCTGCATATGATG 59.181 43.478 16.98 7.94 0.00 3.07
2477 5946 2.265589 TCAGGTGCTGCATATGATGG 57.734 50.000 5.27 0.00 0.00 3.51
2479 5948 0.184211 AGGTGCTGCATATGATGGCA 59.816 50.000 5.27 9.95 38.52 4.92
2489 5958 6.321848 TGCATATGATGGCAGAATTTAGTG 57.678 37.500 6.97 0.00 34.58 2.74
2490 5959 5.242171 TGCATATGATGGCAGAATTTAGTGG 59.758 40.000 6.97 0.00 34.58 4.00
2491 5960 5.706916 CATATGATGGCAGAATTTAGTGGC 58.293 41.667 0.00 3.77 39.62 5.01
2492 5961 3.370840 TGATGGCAGAATTTAGTGGCT 57.629 42.857 10.12 0.00 39.88 4.75
2493 5962 4.502105 TGATGGCAGAATTTAGTGGCTA 57.498 40.909 10.12 0.00 39.88 3.93
2494 5963 4.199310 TGATGGCAGAATTTAGTGGCTAC 58.801 43.478 10.12 0.00 39.88 3.58
2495 5964 3.712016 TGGCAGAATTTAGTGGCTACA 57.288 42.857 2.02 0.00 39.88 2.74
2496 5965 4.027674 TGGCAGAATTTAGTGGCTACAA 57.972 40.909 2.02 0.00 39.88 2.41
2497 5966 4.599041 TGGCAGAATTTAGTGGCTACAAT 58.401 39.130 2.02 0.00 39.88 2.71
2531 6000 7.907389 AGTAATTGAAAGACAGATGTACCTGA 58.093 34.615 6.18 0.00 37.59 3.86
2538 6007 5.886960 AGACAGATGTACCTGAAAATTGC 57.113 39.130 6.18 0.00 37.59 3.56
2540 6009 4.406456 ACAGATGTACCTGAAAATTGCCA 58.594 39.130 6.18 0.00 37.59 4.92
2550 6019 2.702478 TGAAAATTGCCATGTGACCCAA 59.298 40.909 0.00 0.00 0.00 4.12
2563 6032 1.144708 TGACCCAACTCCAATTGCTCA 59.855 47.619 0.00 0.00 0.00 4.26
2565 6034 0.529378 CCCAACTCCAATTGCTCAGC 59.471 55.000 0.00 0.00 0.00 4.26
2566 6035 1.542492 CCAACTCCAATTGCTCAGCT 58.458 50.000 0.00 0.00 0.00 4.24
2567 6036 2.618816 CCCAACTCCAATTGCTCAGCTA 60.619 50.000 0.00 0.00 0.00 3.32
2568 6037 3.285484 CCAACTCCAATTGCTCAGCTAT 58.715 45.455 0.00 0.00 0.00 2.97
2569 6038 3.314635 CCAACTCCAATTGCTCAGCTATC 59.685 47.826 0.00 0.00 0.00 2.08
2570 6039 2.831333 ACTCCAATTGCTCAGCTATCG 58.169 47.619 0.00 0.00 0.00 2.92
2571 6040 2.432146 ACTCCAATTGCTCAGCTATCGA 59.568 45.455 0.00 0.00 0.00 3.59
2572 6041 2.799412 CTCCAATTGCTCAGCTATCGAC 59.201 50.000 0.00 0.00 0.00 4.20
2577 6046 5.119898 CCAATTGCTCAGCTATCGACTTATC 59.880 44.000 0.00 0.00 0.00 1.75
2580 6049 6.635030 TTGCTCAGCTATCGACTTATCTTA 57.365 37.500 0.00 0.00 0.00 2.10
2588 6057 8.775527 CAGCTATCGACTTATCTTAGACTTGTA 58.224 37.037 0.00 0.00 0.00 2.41
2595 6064 7.483580 ACTTATCTTAGACTTGTAGCACCTT 57.516 36.000 0.00 0.00 0.00 3.50
2596 6065 7.548967 ACTTATCTTAGACTTGTAGCACCTTC 58.451 38.462 0.00 0.00 0.00 3.46
2609 6078 1.200020 GCACCTTCGGAATTTGTCAGG 59.800 52.381 0.00 0.00 0.00 3.86
2613 6082 4.941263 CACCTTCGGAATTTGTCAGGATTA 59.059 41.667 0.00 0.00 0.00 1.75
2626 6095 5.423886 TGTCAGGATTATAATGTGTTGCGA 58.576 37.500 1.78 0.00 0.00 5.10
2631 6100 4.319766 GGATTATAATGTGTTGCGAGGCTG 60.320 45.833 1.78 0.00 0.00 4.85
2654 6123 7.581213 TGTGAATGACAGTTGTTTTTCCTAT 57.419 32.000 5.98 0.00 0.00 2.57
2655 6124 8.006298 TGTGAATGACAGTTGTTTTTCCTATT 57.994 30.769 5.98 0.00 0.00 1.73
2656 6125 8.134895 TGTGAATGACAGTTGTTTTTCCTATTC 58.865 33.333 0.00 0.00 0.00 1.75
2664 6133 9.476202 ACAGTTGTTTTTCCTATTCTTTATTGC 57.524 29.630 0.00 0.00 0.00 3.56
2669 6138 9.638239 TGTTTTTCCTATTCTTTATTGCATGTC 57.362 29.630 0.00 0.00 0.00 3.06
2674 6143 6.017934 TCCTATTCTTTATTGCATGTCTTCGC 60.018 38.462 0.00 0.00 0.00 4.70
2694 6163 6.494893 TCGCATTGCTTCTTACATTAAAGT 57.505 33.333 7.12 0.00 0.00 2.66
2696 6165 8.208718 TCGCATTGCTTCTTACATTAAAGTAT 57.791 30.769 7.12 0.00 0.00 2.12
2697 6166 9.320352 TCGCATTGCTTCTTACATTAAAGTATA 57.680 29.630 7.12 0.00 0.00 1.47
2712 6181 3.708236 AGTATAAAGGGGGCAGAGAGA 57.292 47.619 0.00 0.00 0.00 3.10
2732 6201 8.863086 AGAGAGATCCTTTCATTGAGATCTAAG 58.137 37.037 13.81 3.37 44.18 2.18
2737 6206 9.947433 GATCCTTTCATTGAGATCTAAGATGAT 57.053 33.333 13.04 4.83 33.79 2.45
2769 6238 4.974645 TGTATGAAGTCTGTGGGTCTTT 57.025 40.909 0.00 0.00 0.00 2.52
2836 6308 7.626028 GCAACTCTGAAATTCTGAAGAAGATCC 60.626 40.741 4.22 0.00 37.48 3.36
2848 6320 4.024048 TGAAGAAGATCCAGAAAAACGCAC 60.024 41.667 0.00 0.00 0.00 5.34
2850 6322 0.517316 AGATCCAGAAAAACGCACGC 59.483 50.000 0.00 0.00 0.00 5.34
2871 6343 4.025858 GCAGCCAGCCAGAGGACA 62.026 66.667 0.00 0.00 37.23 4.02
2872 6344 2.752358 CAGCCAGCCAGAGGACAA 59.248 61.111 0.00 0.00 0.00 3.18
2873 6345 1.073722 CAGCCAGCCAGAGGACAAA 59.926 57.895 0.00 0.00 0.00 2.83
2874 6346 0.538057 CAGCCAGCCAGAGGACAAAA 60.538 55.000 0.00 0.00 0.00 2.44
2875 6347 0.185901 AGCCAGCCAGAGGACAAAAA 59.814 50.000 0.00 0.00 0.00 1.94
2876 6348 0.315251 GCCAGCCAGAGGACAAAAAC 59.685 55.000 0.00 0.00 0.00 2.43
2877 6349 0.593128 CCAGCCAGAGGACAAAAACG 59.407 55.000 0.00 0.00 0.00 3.60
2878 6350 0.593128 CAGCCAGAGGACAAAAACGG 59.407 55.000 0.00 0.00 0.00 4.44
2879 6351 0.182775 AGCCAGAGGACAAAAACGGT 59.817 50.000 0.00 0.00 0.00 4.83
2900 6372 4.072131 GTTTACTGAATCCTTGGACAGCA 58.928 43.478 7.06 0.00 34.25 4.41
2902 6374 1.701847 ACTGAATCCTTGGACAGCAGT 59.298 47.619 12.22 12.22 34.25 4.40
2904 6376 1.699083 TGAATCCTTGGACAGCAGTGA 59.301 47.619 0.00 0.00 0.00 3.41
2905 6377 2.106338 TGAATCCTTGGACAGCAGTGAA 59.894 45.455 0.00 0.00 0.00 3.18
2906 6378 2.191128 ATCCTTGGACAGCAGTGAAC 57.809 50.000 0.00 0.00 0.00 3.18
2907 6379 0.836606 TCCTTGGACAGCAGTGAACA 59.163 50.000 0.00 0.00 0.00 3.18
2908 6380 1.211703 TCCTTGGACAGCAGTGAACAA 59.788 47.619 0.00 0.00 0.00 2.83
2909 6381 2.023673 CCTTGGACAGCAGTGAACAAA 58.976 47.619 0.00 0.00 0.00 2.83
2910 6382 2.223572 CCTTGGACAGCAGTGAACAAAC 60.224 50.000 0.00 0.00 0.00 2.93
2911 6383 1.388547 TGGACAGCAGTGAACAAACC 58.611 50.000 0.00 0.00 0.00 3.27
2912 6384 1.340502 TGGACAGCAGTGAACAAACCA 60.341 47.619 0.00 0.00 0.00 3.67
2913 6385 1.956477 GGACAGCAGTGAACAAACCAT 59.044 47.619 0.00 0.00 0.00 3.55
2914 6386 2.287788 GGACAGCAGTGAACAAACCATG 60.288 50.000 0.00 0.00 0.00 3.66
2915 6387 1.067516 ACAGCAGTGAACAAACCATGC 59.932 47.619 0.00 0.00 0.00 4.06
2916 6388 0.675633 AGCAGTGAACAAACCATGCC 59.324 50.000 0.00 0.00 34.24 4.40
2917 6389 0.675633 GCAGTGAACAAACCATGCCT 59.324 50.000 0.00 0.00 0.00 4.75
2918 6390 1.885887 GCAGTGAACAAACCATGCCTA 59.114 47.619 0.00 0.00 0.00 3.93
2919 6391 2.351738 GCAGTGAACAAACCATGCCTAC 60.352 50.000 0.00 0.00 0.00 3.18
2920 6392 3.149196 CAGTGAACAAACCATGCCTACT 58.851 45.455 0.00 0.00 0.00 2.57
2921 6393 3.569701 CAGTGAACAAACCATGCCTACTT 59.430 43.478 0.00 0.00 0.00 2.24
2922 6394 4.037923 CAGTGAACAAACCATGCCTACTTT 59.962 41.667 0.00 0.00 0.00 2.66
2923 6395 4.037923 AGTGAACAAACCATGCCTACTTTG 59.962 41.667 0.00 0.00 0.00 2.77
2924 6396 4.037446 GTGAACAAACCATGCCTACTTTGA 59.963 41.667 0.00 0.00 0.00 2.69
2925 6397 4.832266 TGAACAAACCATGCCTACTTTGAT 59.168 37.500 0.00 0.00 0.00 2.57
2926 6398 4.789012 ACAAACCATGCCTACTTTGATG 57.211 40.909 0.00 0.00 0.00 3.07
2927 6399 3.056607 ACAAACCATGCCTACTTTGATGC 60.057 43.478 0.00 0.00 0.00 3.91
2928 6400 1.382522 ACCATGCCTACTTTGATGCG 58.617 50.000 0.00 0.00 0.00 4.73
2929 6401 0.029834 CCATGCCTACTTTGATGCGC 59.970 55.000 0.00 0.00 0.00 6.09
2930 6402 0.029834 CATGCCTACTTTGATGCGCC 59.970 55.000 4.18 0.00 0.00 6.53
2931 6403 0.394216 ATGCCTACTTTGATGCGCCA 60.394 50.000 4.18 0.00 0.00 5.69
2932 6404 1.305219 TGCCTACTTTGATGCGCCAC 61.305 55.000 4.18 0.00 0.00 5.01
2933 6405 1.026718 GCCTACTTTGATGCGCCACT 61.027 55.000 4.18 0.00 0.00 4.00
2934 6406 1.009829 CCTACTTTGATGCGCCACTC 58.990 55.000 4.18 0.00 0.00 3.51
2935 6407 1.009829 CTACTTTGATGCGCCACTCC 58.990 55.000 4.18 0.00 0.00 3.85
2936 6408 0.739462 TACTTTGATGCGCCACTCCG 60.739 55.000 4.18 0.00 0.00 4.63
2937 6409 1.741401 CTTTGATGCGCCACTCCGA 60.741 57.895 4.18 0.00 0.00 4.55
2938 6410 1.970917 CTTTGATGCGCCACTCCGAC 61.971 60.000 4.18 0.00 0.00 4.79
2939 6411 4.794439 TGATGCGCCACTCCGACG 62.794 66.667 4.18 0.00 0.00 5.12
2945 6417 4.057428 GCCACTCCGACGCTGTCT 62.057 66.667 7.03 0.00 0.00 3.41
2946 6418 2.179517 CCACTCCGACGCTGTCTC 59.820 66.667 7.03 0.00 0.00 3.36
2947 6419 2.179517 CACTCCGACGCTGTCTCC 59.820 66.667 7.03 0.00 0.00 3.71
2948 6420 2.034376 ACTCCGACGCTGTCTCCT 59.966 61.111 7.03 0.00 0.00 3.69
2949 6421 1.604023 ACTCCGACGCTGTCTCCTT 60.604 57.895 7.03 0.00 0.00 3.36
2950 6422 1.153939 CTCCGACGCTGTCTCCTTG 60.154 63.158 7.03 0.00 0.00 3.61
2951 6423 2.811317 CCGACGCTGTCTCCTTGC 60.811 66.667 7.03 0.00 0.00 4.01
2952 6424 2.049156 CGACGCTGTCTCCTTGCA 60.049 61.111 7.03 0.00 0.00 4.08
2953 6425 2.375766 CGACGCTGTCTCCTTGCAC 61.376 63.158 7.03 0.00 0.00 4.57
2954 6426 2.356313 ACGCTGTCTCCTTGCACG 60.356 61.111 0.00 0.00 0.00 5.34
2955 6427 2.356313 CGCTGTCTCCTTGCACGT 60.356 61.111 0.00 0.00 0.00 4.49
2956 6428 2.375766 CGCTGTCTCCTTGCACGTC 61.376 63.158 0.00 0.00 0.00 4.34
2957 6429 2.375766 GCTGTCTCCTTGCACGTCG 61.376 63.158 0.00 0.00 0.00 5.12
2958 6430 1.285950 CTGTCTCCTTGCACGTCGA 59.714 57.895 0.00 0.00 0.00 4.20
2959 6431 0.730834 CTGTCTCCTTGCACGTCGAG 60.731 60.000 0.00 0.00 0.00 4.04
2960 6432 2.089349 GTCTCCTTGCACGTCGAGC 61.089 63.158 7.78 7.78 0.00 5.03
2994 6466 4.819761 GCGCCGACCTGCATCTGA 62.820 66.667 0.00 0.00 0.00 3.27
2995 6467 2.584418 CGCCGACCTGCATCTGAG 60.584 66.667 0.00 0.00 0.00 3.35
2996 6468 2.581354 GCCGACCTGCATCTGAGT 59.419 61.111 0.00 0.00 0.00 3.41
2997 6469 1.812922 GCCGACCTGCATCTGAGTG 60.813 63.158 0.00 0.00 0.00 3.51
2998 6470 1.153489 CCGACCTGCATCTGAGTGG 60.153 63.158 0.00 0.00 0.00 4.00
2999 6471 1.812922 CGACCTGCATCTGAGTGGC 60.813 63.158 0.00 0.00 0.00 5.01
3000 6472 1.812922 GACCTGCATCTGAGTGGCG 60.813 63.158 0.00 0.00 0.00 5.69
3001 6473 3.200593 CCTGCATCTGAGTGGCGC 61.201 66.667 0.00 0.00 0.00 6.53
3002 6474 3.200593 CTGCATCTGAGTGGCGCC 61.201 66.667 22.73 22.73 0.00 6.53
3003 6475 3.677284 CTGCATCTGAGTGGCGCCT 62.677 63.158 29.70 8.29 0.00 5.52
3004 6476 3.200593 GCATCTGAGTGGCGCCTG 61.201 66.667 29.70 16.75 0.00 4.85
3005 6477 2.513204 CATCTGAGTGGCGCCTGG 60.513 66.667 29.70 12.69 0.00 4.45
3006 6478 4.479993 ATCTGAGTGGCGCCTGGC 62.480 66.667 29.70 17.55 42.51 4.85
3017 6489 3.443925 GCCTGGCCTTCCGCTTTC 61.444 66.667 7.66 0.00 37.74 2.62
3018 6490 2.751837 CCTGGCCTTCCGCTTTCC 60.752 66.667 3.32 0.00 37.74 3.13
3019 6491 2.034066 CTGGCCTTCCGCTTTCCA 59.966 61.111 3.32 0.00 37.74 3.53
3020 6492 2.034066 TGGCCTTCCGCTTTCCAG 59.966 61.111 3.32 0.00 37.74 3.86
3021 6493 3.443925 GGCCTTCCGCTTTCCAGC 61.444 66.667 0.00 0.00 43.41 4.85
3033 6505 4.373116 TCCAGCGTGGAAGGTCGC 62.373 66.667 4.51 1.28 45.00 5.19
3038 6510 4.003788 CGTGGAAGGTCGCAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
3039 6511 2.358737 GTGGAAGGTCGCAGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
3040 6512 4.329545 TGGAAGGTCGCAGGGTGC 62.330 66.667 0.00 0.00 40.69 5.01
3041 6513 4.329545 GGAAGGTCGCAGGGTGCA 62.330 66.667 0.00 0.00 45.36 4.57
3042 6514 2.045926 GAAGGTCGCAGGGTGCAT 60.046 61.111 0.00 0.00 45.36 3.96
3043 6515 2.360350 AAGGTCGCAGGGTGCATG 60.360 61.111 0.00 0.00 45.36 4.06
3049 6521 3.807538 GCAGGGTGCATGCGACTG 61.808 66.667 23.66 23.66 44.26 3.51
3050 6522 2.046988 CAGGGTGCATGCGACTGA 60.047 61.111 23.64 0.54 0.00 3.41
3051 6523 1.450848 CAGGGTGCATGCGACTGAT 60.451 57.895 23.64 2.74 0.00 2.90
3052 6524 1.153289 AGGGTGCATGCGACTGATC 60.153 57.895 14.09 0.00 0.00 2.92
3053 6525 1.450134 GGGTGCATGCGACTGATCA 60.450 57.895 14.09 0.00 0.00 2.92
3054 6526 1.434622 GGGTGCATGCGACTGATCAG 61.435 60.000 21.37 21.37 0.00 2.90
3055 6527 0.742281 GGTGCATGCGACTGATCAGT 60.742 55.000 28.23 28.23 45.84 3.41
3056 6528 0.372679 GTGCATGCGACTGATCAGTG 59.627 55.000 32.50 23.02 42.66 3.66
3057 6529 1.351012 GCATGCGACTGATCAGTGC 59.649 57.895 32.50 30.05 42.66 4.40
3058 6530 1.088340 GCATGCGACTGATCAGTGCT 61.088 55.000 32.50 19.51 42.66 4.40
3059 6531 0.651031 CATGCGACTGATCAGTGCTG 59.349 55.000 32.50 24.59 42.66 4.41
3060 6532 0.461516 ATGCGACTGATCAGTGCTGG 60.462 55.000 32.50 18.30 42.66 4.85
3061 6533 1.079543 GCGACTGATCAGTGCTGGT 60.080 57.895 32.50 8.00 42.66 4.00
3062 6534 0.671781 GCGACTGATCAGTGCTGGTT 60.672 55.000 32.50 6.25 42.66 3.67
3063 6535 1.354040 CGACTGATCAGTGCTGGTTC 58.646 55.000 32.50 14.88 42.66 3.62
3064 6536 1.354040 GACTGATCAGTGCTGGTTCG 58.646 55.000 32.50 1.11 42.66 3.95
3065 6537 0.671781 ACTGATCAGTGCTGGTTCGC 60.672 55.000 27.37 0.00 40.75 4.70
3066 6538 1.690283 CTGATCAGTGCTGGTTCGCG 61.690 60.000 14.95 0.00 0.00 5.87
3067 6539 3.088500 GATCAGTGCTGGTTCGCGC 62.089 63.158 0.00 0.00 40.58 6.86
3074 6546 3.843240 CTGGTTCGCGCGCTCTTC 61.843 66.667 30.48 16.16 0.00 2.87
3075 6547 4.357947 TGGTTCGCGCGCTCTTCT 62.358 61.111 30.48 0.00 0.00 2.85
3076 6548 3.843240 GGTTCGCGCGCTCTTCTG 61.843 66.667 30.48 12.65 0.00 3.02
3077 6549 2.805353 GTTCGCGCGCTCTTCTGA 60.805 61.111 30.48 15.07 0.00 3.27
3078 6550 2.049526 TTCGCGCGCTCTTCTGAA 60.050 55.556 30.48 20.30 0.00 3.02
3079 6551 2.372690 TTCGCGCGCTCTTCTGAAC 61.373 57.895 30.48 0.00 0.00 3.18
3080 6552 2.749110 TTCGCGCGCTCTTCTGAACT 62.749 55.000 30.48 0.00 0.00 3.01
3081 6553 2.783064 CGCGCGCTCTTCTGAACTC 61.783 63.158 30.48 0.00 0.00 3.01
3082 6554 1.734477 GCGCGCTCTTCTGAACTCA 60.734 57.895 26.67 0.00 0.00 3.41
3083 6555 1.284982 GCGCGCTCTTCTGAACTCAA 61.285 55.000 26.67 0.00 0.00 3.02
3084 6556 0.436531 CGCGCTCTTCTGAACTCAAC 59.563 55.000 5.56 0.00 0.00 3.18
3085 6557 1.502231 GCGCTCTTCTGAACTCAACA 58.498 50.000 0.00 0.00 0.00 3.33
3086 6558 1.193426 GCGCTCTTCTGAACTCAACAC 59.807 52.381 0.00 0.00 0.00 3.32
3087 6559 1.795286 CGCTCTTCTGAACTCAACACC 59.205 52.381 0.00 0.00 0.00 4.16
3088 6560 2.546795 CGCTCTTCTGAACTCAACACCT 60.547 50.000 0.00 0.00 0.00 4.00
3089 6561 3.063485 GCTCTTCTGAACTCAACACCTC 58.937 50.000 0.00 0.00 0.00 3.85
3090 6562 3.493350 GCTCTTCTGAACTCAACACCTCA 60.493 47.826 0.00 0.00 0.00 3.86
3091 6563 4.802248 GCTCTTCTGAACTCAACACCTCAT 60.802 45.833 0.00 0.00 0.00 2.90
3092 6564 5.296151 TCTTCTGAACTCAACACCTCATT 57.704 39.130 0.00 0.00 0.00 2.57
3093 6565 5.300752 TCTTCTGAACTCAACACCTCATTC 58.699 41.667 0.00 0.00 0.00 2.67
3094 6566 3.653344 TCTGAACTCAACACCTCATTCG 58.347 45.455 0.00 0.00 0.00 3.34
3095 6567 2.143122 TGAACTCAACACCTCATTCGC 58.857 47.619 0.00 0.00 0.00 4.70
3096 6568 1.126846 GAACTCAACACCTCATTCGCG 59.873 52.381 0.00 0.00 0.00 5.87
3097 6569 1.291877 ACTCAACACCTCATTCGCGC 61.292 55.000 0.00 0.00 0.00 6.86
3098 6570 1.291184 CTCAACACCTCATTCGCGCA 61.291 55.000 8.75 0.00 0.00 6.09
3099 6571 1.154413 CAACACCTCATTCGCGCAC 60.154 57.895 8.75 0.00 0.00 5.34
3100 6572 2.325082 AACACCTCATTCGCGCACC 61.325 57.895 8.75 0.00 0.00 5.01
3101 6573 2.741985 CACCTCATTCGCGCACCA 60.742 61.111 8.75 0.00 0.00 4.17
3102 6574 2.742372 ACCTCATTCGCGCACCAC 60.742 61.111 8.75 0.00 0.00 4.16
3103 6575 3.499737 CCTCATTCGCGCACCACC 61.500 66.667 8.75 0.00 0.00 4.61
3104 6576 3.499737 CTCATTCGCGCACCACCC 61.500 66.667 8.75 0.00 0.00 4.61
3105 6577 4.321966 TCATTCGCGCACCACCCA 62.322 61.111 8.75 0.00 0.00 4.51
3106 6578 4.101790 CATTCGCGCACCACCCAC 62.102 66.667 8.75 0.00 0.00 4.61
3112 6584 4.394712 CGCACCACCCACCTCCTC 62.395 72.222 0.00 0.00 0.00 3.71
3113 6585 4.394712 GCACCACCCACCTCCTCG 62.395 72.222 0.00 0.00 0.00 4.63
3114 6586 2.923035 CACCACCCACCTCCTCGT 60.923 66.667 0.00 0.00 0.00 4.18
3115 6587 2.603776 ACCACCCACCTCCTCGTC 60.604 66.667 0.00 0.00 0.00 4.20
3116 6588 3.760035 CCACCCACCTCCTCGTCG 61.760 72.222 0.00 0.00 0.00 5.12
3117 6589 3.760035 CACCCACCTCCTCGTCGG 61.760 72.222 0.00 0.00 0.00 4.79
3120 6592 3.827898 CCACCTCCTCGTCGGCTC 61.828 72.222 0.00 0.00 0.00 4.70
3121 6593 3.827898 CACCTCCTCGTCGGCTCC 61.828 72.222 0.00 0.00 0.00 4.70
3122 6594 4.361971 ACCTCCTCGTCGGCTCCA 62.362 66.667 0.00 0.00 0.00 3.86
3123 6595 3.522731 CCTCCTCGTCGGCTCCAG 61.523 72.222 0.00 0.00 0.00 3.86
3124 6596 4.200283 CTCCTCGTCGGCTCCAGC 62.200 72.222 0.00 0.00 41.14 4.85
3126 6598 4.069232 CCTCGTCGGCTCCAGCAA 62.069 66.667 0.03 0.00 44.36 3.91
3127 6599 2.811317 CTCGTCGGCTCCAGCAAC 60.811 66.667 0.03 0.00 44.36 4.17
3128 6600 3.288308 CTCGTCGGCTCCAGCAACT 62.288 63.158 0.03 0.00 44.36 3.16
3129 6601 3.114616 CGTCGGCTCCAGCAACTG 61.115 66.667 0.03 0.00 44.36 3.16
3130 6602 3.426568 GTCGGCTCCAGCAACTGC 61.427 66.667 0.03 0.00 44.36 4.40
3140 6612 3.869272 GCAACTGCTGCCGATCGG 61.869 66.667 30.03 30.03 46.13 4.18
3141 6613 2.125552 CAACTGCTGCCGATCGGA 60.126 61.111 37.64 20.50 37.50 4.55
3142 6614 1.522355 CAACTGCTGCCGATCGGAT 60.522 57.895 37.64 11.65 37.50 4.18
3143 6615 1.091771 CAACTGCTGCCGATCGGATT 61.092 55.000 37.64 16.71 37.50 3.01
3144 6616 1.091771 AACTGCTGCCGATCGGATTG 61.092 55.000 37.64 24.41 37.50 2.67
3145 6617 2.890109 CTGCTGCCGATCGGATTGC 61.890 63.158 37.64 31.63 37.50 3.56
3146 6618 3.654020 GCTGCCGATCGGATTGCC 61.654 66.667 37.64 19.37 37.50 4.52
3147 6619 2.974698 CTGCCGATCGGATTGCCC 60.975 66.667 37.64 18.62 37.50 5.36
3148 6620 3.755526 CTGCCGATCGGATTGCCCA 62.756 63.158 37.64 22.13 37.50 5.36
3149 6621 2.515991 GCCGATCGGATTGCCCAA 60.516 61.111 37.64 0.00 37.50 4.12
3150 6622 2.834618 GCCGATCGGATTGCCCAAC 61.835 63.158 37.64 12.57 37.50 3.77
3151 6623 1.153168 CCGATCGGATTGCCCAACT 60.153 57.895 30.62 0.00 37.50 3.16
3152 6624 1.439353 CCGATCGGATTGCCCAACTG 61.439 60.000 30.62 0.00 37.50 3.16
3153 6625 1.439353 CGATCGGATTGCCCAACTGG 61.439 60.000 7.38 0.00 34.14 4.00
3164 6636 2.571548 CCAACTGGGGAGATTGTGC 58.428 57.895 0.00 0.00 0.00 4.57
3165 6637 0.967380 CCAACTGGGGAGATTGTGCC 60.967 60.000 0.00 0.00 35.33 5.01
3166 6638 1.002134 AACTGGGGAGATTGTGCCG 60.002 57.895 0.00 0.00 37.60 5.69
3167 6639 2.825836 CTGGGGAGATTGTGCCGC 60.826 66.667 0.00 0.00 37.60 6.53
3168 6640 4.776322 TGGGGAGATTGTGCCGCG 62.776 66.667 0.00 0.00 37.60 6.46
3170 6642 4.467084 GGGAGATTGTGCCGCGGA 62.467 66.667 33.48 11.82 0.00 5.54
3210 6682 4.335594 CCGGATTCAAGGTATGTTTCTTCC 59.664 45.833 0.00 0.00 0.00 3.46
3256 6728 9.589461 ACTAGGATTGCACAATACTACTATACT 57.411 33.333 10.64 0.00 40.09 2.12
3259 6731 8.924303 AGGATTGCACAATACTACTATACTTCA 58.076 33.333 6.31 0.00 40.09 3.02
3261 6733 9.967346 GATTGCACAATACTACTATACTTCAGA 57.033 33.333 0.00 0.00 0.00 3.27
3263 6735 9.967346 TTGCACAATACTACTATACTTCAGATC 57.033 33.333 0.00 0.00 0.00 2.75
3277 6749 2.022195 TCAGATCGTACCTAGTGGCAC 58.978 52.381 10.29 10.29 36.63 5.01
3280 6752 0.460311 ATCGTACCTAGTGGCACAGC 59.540 55.000 21.41 2.03 41.80 4.40
3281 6753 0.896479 TCGTACCTAGTGGCACAGCA 60.896 55.000 21.41 3.34 41.80 4.41
3282 6754 0.736325 CGTACCTAGTGGCACAGCAC 60.736 60.000 21.41 13.04 41.80 4.40
3283 6755 0.736325 GTACCTAGTGGCACAGCACG 60.736 60.000 21.41 4.60 41.80 5.34
3290 6762 2.050985 GGCACAGCACGTTTCAGC 60.051 61.111 0.00 0.00 0.00 4.26
3295 6767 1.029408 ACAGCACGTTTCAGCACCAA 61.029 50.000 0.00 0.00 0.00 3.67
3306 6778 4.933505 TTCAGCACCAACAAATGATTCA 57.066 36.364 0.00 0.00 0.00 2.57
3317 6789 5.982890 ACAAATGATTCAGTTTCCGGAAT 57.017 34.783 19.62 0.51 38.06 3.01
3324 6796 6.851609 TGATTCAGTTTCCGGAATACAAATG 58.148 36.000 19.62 12.65 35.92 2.32
3326 6798 5.621197 TCAGTTTCCGGAATACAAATGTG 57.379 39.130 19.62 12.07 0.00 3.21
3327 6799 4.457603 TCAGTTTCCGGAATACAAATGTGG 59.542 41.667 19.62 0.00 0.00 4.17
3328 6800 4.217550 CAGTTTCCGGAATACAAATGTGGT 59.782 41.667 19.62 0.00 0.00 4.16
3330 6802 6.005198 AGTTTCCGGAATACAAATGTGGTTA 58.995 36.000 19.62 0.00 0.00 2.85
3357 6829 4.009675 TCATGCAGTACCCACTCAATTTC 58.990 43.478 0.00 0.00 30.46 2.17
3358 6830 3.500448 TGCAGTACCCACTCAATTTCA 57.500 42.857 0.00 0.00 30.46 2.69
3373 6858 6.883217 ACTCAATTTCAGAGTGCACATAGAAT 59.117 34.615 21.04 9.34 44.23 2.40
3377 6862 4.397481 TCAGAGTGCACATAGAATCAGG 57.603 45.455 21.04 3.52 0.00 3.86
3382 6867 4.910195 AGTGCACATAGAATCAGGAAACA 58.090 39.130 21.04 0.00 0.00 2.83
3387 6872 5.220931 GCACATAGAATCAGGAAACATCACC 60.221 44.000 0.00 0.00 0.00 4.02
3388 6873 5.297776 CACATAGAATCAGGAAACATCACCC 59.702 44.000 0.00 0.00 0.00 4.61
3390 6875 6.386927 ACATAGAATCAGGAAACATCACCCTA 59.613 38.462 0.00 0.00 0.00 3.53
3405 6890 7.529555 ACATCACCCTACATATTCATTGGATT 58.470 34.615 0.00 0.00 0.00 3.01
3417 6902 8.736244 CATATTCATTGGATTGAGATACATGCA 58.264 33.333 0.00 0.00 0.00 3.96
3422 6907 4.847198 TGGATTGAGATACATGCACACTT 58.153 39.130 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.177026 AGCTGTCAGTAAGAGCATTTACG 58.823 43.478 0.93 0.00 46.56 3.18
21 22 2.836981 AGGAGCTGTCAGTAAGAGCATT 59.163 45.455 0.93 0.00 46.56 3.56
31 32 5.757850 AAAACAAAGTTAGGAGCTGTCAG 57.242 39.130 0.00 0.00 0.00 3.51
37 38 7.589574 TGAAAACAAAAACAAAGTTAGGAGC 57.410 32.000 0.00 0.00 0.00 4.70
44 45 6.035542 CCGCACTATGAAAACAAAAACAAAGT 59.964 34.615 0.00 0.00 0.00 2.66
74 75 3.912563 CACAGTAGCAATACTATACGGCG 59.087 47.826 4.80 4.80 32.15 6.46
75 76 3.673809 GCACAGTAGCAATACTATACGGC 59.326 47.826 0.00 0.00 32.15 5.68
76 77 4.917998 CAGCACAGTAGCAATACTATACGG 59.082 45.833 0.00 0.00 36.85 4.02
78 79 5.403766 CAGCAGCACAGTAGCAATACTATAC 59.596 44.000 0.00 0.00 36.85 1.47
79 80 5.509670 CCAGCAGCACAGTAGCAATACTATA 60.510 44.000 0.00 0.00 36.85 1.31
80 81 4.375272 CAGCAGCACAGTAGCAATACTAT 58.625 43.478 0.00 0.00 36.85 2.12
81 82 3.430790 CCAGCAGCACAGTAGCAATACTA 60.431 47.826 0.00 0.00 36.85 1.82
82 83 2.625737 CAGCAGCACAGTAGCAATACT 58.374 47.619 0.00 0.00 36.85 2.12
83 84 1.667724 CCAGCAGCACAGTAGCAATAC 59.332 52.381 0.00 0.00 36.85 1.89
84 85 1.278985 ACCAGCAGCACAGTAGCAATA 59.721 47.619 0.00 0.00 36.85 1.90
85 86 0.037303 ACCAGCAGCACAGTAGCAAT 59.963 50.000 0.00 0.00 36.85 3.56
86 87 0.886043 CACCAGCAGCACAGTAGCAA 60.886 55.000 0.00 0.00 36.85 3.91
87 88 1.301953 CACCAGCAGCACAGTAGCA 60.302 57.895 0.00 0.00 36.85 3.49
88 89 2.684843 GCACCAGCAGCACAGTAGC 61.685 63.158 0.00 0.00 41.58 3.58
89 90 1.004080 AGCACCAGCAGCACAGTAG 60.004 57.895 0.00 0.00 45.49 2.57
90 91 1.004560 GAGCACCAGCAGCACAGTA 60.005 57.895 0.00 0.00 45.49 2.74
91 92 2.281345 GAGCACCAGCAGCACAGT 60.281 61.111 0.00 0.00 45.49 3.55
92 93 2.281276 TGAGCACCAGCAGCACAG 60.281 61.111 0.00 0.00 45.49 3.66
93 94 2.592574 GTGAGCACCAGCAGCACA 60.593 61.111 0.00 0.00 43.44 4.57
94 95 2.281345 AGTGAGCACCAGCAGCAC 60.281 61.111 0.00 0.00 45.49 4.40
155 163 9.555727 TCGCATTTAGCCTAAATAATCTTACTT 57.444 29.630 9.30 0.00 41.38 2.24
165 173 3.477530 GTCCCTCGCATTTAGCCTAAAT 58.522 45.455 3.83 3.83 41.38 1.40
166 174 2.740580 CGTCCCTCGCATTTAGCCTAAA 60.741 50.000 0.00 0.00 41.38 1.85
169 177 1.144057 CGTCCCTCGCATTTAGCCT 59.856 57.895 0.00 0.00 41.38 4.58
172 180 0.249489 CCTCCGTCCCTCGCATTTAG 60.249 60.000 0.00 0.00 38.35 1.85
173 181 1.820581 CCTCCGTCCCTCGCATTTA 59.179 57.895 0.00 0.00 38.35 1.40
174 182 2.584608 CCTCCGTCCCTCGCATTT 59.415 61.111 0.00 0.00 38.35 2.32
195 211 0.676736 GGGTCGGGCTCAATAGAGAG 59.323 60.000 0.00 0.00 44.98 3.20
240 256 0.396139 ATGCCTATGTGGGTTGCTGG 60.396 55.000 0.00 0.00 36.00 4.85
246 262 2.769209 AGAGAAGATGCCTATGTGGGT 58.231 47.619 0.00 0.00 36.00 4.51
255 271 1.294857 GGCGAAGAAGAGAAGATGCC 58.705 55.000 0.00 0.00 0.00 4.40
306 341 1.624312 GACCTCGGAGAAAAACCCTCT 59.376 52.381 6.58 0.00 34.09 3.69
354 390 0.475044 GGTTGGTCCAGGGTTGTGTA 59.525 55.000 0.00 0.00 35.97 2.90
357 393 2.009882 TGGGTTGGTCCAGGGTTGT 61.010 57.895 0.00 0.00 38.11 3.32
359 395 2.931921 GTGGGTTGGTCCAGGGTT 59.068 61.111 0.00 0.00 37.50 4.11
361 397 2.824880 TTCGTGGGTTGGTCCAGGG 61.825 63.158 0.00 0.00 41.52 4.45
364 400 2.109387 CGTTCGTGGGTTGGTCCA 59.891 61.111 0.00 0.00 38.11 4.02
365 401 3.351416 GCGTTCGTGGGTTGGTCC 61.351 66.667 0.00 0.00 0.00 4.46
366 402 3.351416 GGCGTTCGTGGGTTGGTC 61.351 66.667 0.00 0.00 0.00 4.02
397 433 4.452733 CGTCGGCAGGGAGGAACC 62.453 72.222 0.00 0.00 38.08 3.62
453 489 0.734889 CTGGTTCAATCATGGTCGCC 59.265 55.000 0.00 0.00 0.00 5.54
457 493 1.843368 CTGGCTGGTTCAATCATGGT 58.157 50.000 0.00 0.00 0.00 3.55
480 516 0.957395 ACCAAGTGCAGCAATCGAGG 60.957 55.000 0.00 1.70 0.00 4.63
481 517 0.877071 AACCAAGTGCAGCAATCGAG 59.123 50.000 0.00 0.00 0.00 4.04
484 520 0.961019 TGGAACCAAGTGCAGCAATC 59.039 50.000 0.00 0.00 0.00 2.67
501 537 0.169672 CAAGAATTGTGCTCGCCTGG 59.830 55.000 0.00 0.00 42.34 4.45
502 538 3.689224 CAAGAATTGTGCTCGCCTG 57.311 52.632 0.00 0.00 42.34 4.85
513 549 2.407562 ACAAAACCCAGGGCAAGAATT 58.592 42.857 4.91 0.00 0.00 2.17
514 550 2.101640 ACAAAACCCAGGGCAAGAAT 57.898 45.000 4.91 0.00 0.00 2.40
515 551 1.484240 CAACAAAACCCAGGGCAAGAA 59.516 47.619 4.91 0.00 0.00 2.52
516 552 1.118838 CAACAAAACCCAGGGCAAGA 58.881 50.000 4.91 0.00 0.00 3.02
517 553 1.118838 TCAACAAAACCCAGGGCAAG 58.881 50.000 4.91 0.00 0.00 4.01
518 554 1.799933 ATCAACAAAACCCAGGGCAA 58.200 45.000 4.91 0.00 0.00 4.52
519 555 1.691434 GAATCAACAAAACCCAGGGCA 59.309 47.619 4.91 0.00 0.00 5.36
520 556 1.001974 GGAATCAACAAAACCCAGGGC 59.998 52.381 4.91 0.00 0.00 5.19
521 557 2.324541 TGGAATCAACAAAACCCAGGG 58.675 47.619 2.85 2.85 0.00 4.45
522 558 3.306919 CCATGGAATCAACAAAACCCAGG 60.307 47.826 5.56 0.00 0.00 4.45
523 559 3.865684 GCCATGGAATCAACAAAACCCAG 60.866 47.826 18.40 0.00 0.00 4.45
524 560 2.038295 GCCATGGAATCAACAAAACCCA 59.962 45.455 18.40 0.00 0.00 4.51
525 561 2.038295 TGCCATGGAATCAACAAAACCC 59.962 45.455 18.40 0.00 0.00 4.11
526 562 3.244181 ACTGCCATGGAATCAACAAAACC 60.244 43.478 18.40 0.00 0.00 3.27
527 563 3.993920 ACTGCCATGGAATCAACAAAAC 58.006 40.909 18.40 0.00 0.00 2.43
528 564 5.999205 ATACTGCCATGGAATCAACAAAA 57.001 34.783 18.40 0.00 0.00 2.44
529 565 5.245751 ACAATACTGCCATGGAATCAACAAA 59.754 36.000 18.40 0.00 0.00 2.83
530 566 4.771577 ACAATACTGCCATGGAATCAACAA 59.228 37.500 18.40 0.00 0.00 2.83
531 567 4.158209 CACAATACTGCCATGGAATCAACA 59.842 41.667 18.40 1.00 0.00 3.33
532 568 4.158394 ACACAATACTGCCATGGAATCAAC 59.842 41.667 18.40 0.00 0.00 3.18
533 569 4.343231 ACACAATACTGCCATGGAATCAA 58.657 39.130 18.40 0.00 0.00 2.57
534 570 3.947196 GACACAATACTGCCATGGAATCA 59.053 43.478 18.40 2.70 0.00 2.57
535 571 4.202441 AGACACAATACTGCCATGGAATC 58.798 43.478 18.40 0.00 0.00 2.52
536 572 4.240881 AGACACAATACTGCCATGGAAT 57.759 40.909 18.40 1.45 0.00 3.01
537 573 3.719268 AGACACAATACTGCCATGGAA 57.281 42.857 18.40 3.09 0.00 3.53
538 574 3.134623 CCTAGACACAATACTGCCATGGA 59.865 47.826 18.40 0.00 0.00 3.41
539 575 3.118261 ACCTAGACACAATACTGCCATGG 60.118 47.826 7.63 7.63 0.00 3.66
540 576 4.122776 GACCTAGACACAATACTGCCATG 58.877 47.826 0.00 0.00 0.00 3.66
541 577 3.181475 CGACCTAGACACAATACTGCCAT 60.181 47.826 0.00 0.00 0.00 4.40
542 578 2.165641 CGACCTAGACACAATACTGCCA 59.834 50.000 0.00 0.00 0.00 4.92
543 579 2.165845 ACGACCTAGACACAATACTGCC 59.834 50.000 0.00 0.00 0.00 4.85
544 580 3.128938 AGACGACCTAGACACAATACTGC 59.871 47.826 0.00 0.00 0.00 4.40
545 581 4.966965 AGACGACCTAGACACAATACTG 57.033 45.455 0.00 0.00 0.00 2.74
546 582 4.158025 CCAAGACGACCTAGACACAATACT 59.842 45.833 0.00 0.00 0.00 2.12
547 583 4.082354 ACCAAGACGACCTAGACACAATAC 60.082 45.833 0.00 0.00 0.00 1.89
548 584 4.084287 ACCAAGACGACCTAGACACAATA 58.916 43.478 0.00 0.00 0.00 1.90
549 585 2.897969 ACCAAGACGACCTAGACACAAT 59.102 45.455 0.00 0.00 0.00 2.71
550 586 2.313317 ACCAAGACGACCTAGACACAA 58.687 47.619 0.00 0.00 0.00 3.33
551 587 1.991121 ACCAAGACGACCTAGACACA 58.009 50.000 0.00 0.00 0.00 3.72
552 588 2.673833 CAACCAAGACGACCTAGACAC 58.326 52.381 0.00 0.00 0.00 3.67
553 589 1.000506 GCAACCAAGACGACCTAGACA 59.999 52.381 0.00 0.00 0.00 3.41
554 590 1.272769 AGCAACCAAGACGACCTAGAC 59.727 52.381 0.00 0.00 0.00 2.59
555 591 1.272490 CAGCAACCAAGACGACCTAGA 59.728 52.381 0.00 0.00 0.00 2.43
556 592 1.714794 CAGCAACCAAGACGACCTAG 58.285 55.000 0.00 0.00 0.00 3.02
557 593 0.320421 GCAGCAACCAAGACGACCTA 60.320 55.000 0.00 0.00 0.00 3.08
558 594 1.598130 GCAGCAACCAAGACGACCT 60.598 57.895 0.00 0.00 0.00 3.85
559 595 1.845809 CTGCAGCAACCAAGACGACC 61.846 60.000 0.00 0.00 0.00 4.79
560 596 1.160329 ACTGCAGCAACCAAGACGAC 61.160 55.000 15.27 0.00 0.00 4.34
561 597 0.463654 AACTGCAGCAACCAAGACGA 60.464 50.000 15.27 0.00 0.00 4.20
562 598 0.381801 AAACTGCAGCAACCAAGACG 59.618 50.000 15.27 0.00 0.00 4.18
563 599 1.536709 CCAAACTGCAGCAACCAAGAC 60.537 52.381 15.27 0.00 0.00 3.01
564 600 0.746063 CCAAACTGCAGCAACCAAGA 59.254 50.000 15.27 0.00 0.00 3.02
565 601 0.461135 ACCAAACTGCAGCAACCAAG 59.539 50.000 15.27 0.00 0.00 3.61
566 602 0.459489 GACCAAACTGCAGCAACCAA 59.541 50.000 15.27 0.00 0.00 3.67
567 603 0.395586 AGACCAAACTGCAGCAACCA 60.396 50.000 15.27 0.00 0.00 3.67
568 604 0.031178 CAGACCAAACTGCAGCAACC 59.969 55.000 15.27 0.00 0.00 3.77
569 605 0.031178 CCAGACCAAACTGCAGCAAC 59.969 55.000 15.27 0.00 36.67 4.17
570 606 0.395586 ACCAGACCAAACTGCAGCAA 60.396 50.000 15.27 0.00 36.67 3.91
571 607 0.472044 TACCAGACCAAACTGCAGCA 59.528 50.000 15.27 0.00 36.67 4.41
572 608 1.604604 TTACCAGACCAAACTGCAGC 58.395 50.000 15.27 0.00 36.67 5.25
573 609 2.095059 GCATTACCAGACCAAACTGCAG 60.095 50.000 13.48 13.48 36.67 4.41
574 610 1.885887 GCATTACCAGACCAAACTGCA 59.114 47.619 0.00 0.00 36.67 4.41
575 611 2.162681 AGCATTACCAGACCAAACTGC 58.837 47.619 0.00 0.00 36.67 4.40
576 612 5.163622 CCAATAGCATTACCAGACCAAACTG 60.164 44.000 0.00 0.00 37.61 3.16
577 613 4.949856 CCAATAGCATTACCAGACCAAACT 59.050 41.667 0.00 0.00 0.00 2.66
578 614 4.440112 GCCAATAGCATTACCAGACCAAAC 60.440 45.833 0.00 0.00 42.97 2.93
579 615 3.699038 GCCAATAGCATTACCAGACCAAA 59.301 43.478 0.00 0.00 42.97 3.28
580 616 3.287222 GCCAATAGCATTACCAGACCAA 58.713 45.455 0.00 0.00 42.97 3.67
581 617 2.930950 GCCAATAGCATTACCAGACCA 58.069 47.619 0.00 0.00 42.97 4.02
593 629 7.874940 TGTTCATACATAAATGAGCCAATAGC 58.125 34.615 0.00 0.00 36.56 2.97
594 630 9.836076 CATGTTCATACATAAATGAGCCAATAG 57.164 33.333 0.00 0.00 43.07 1.73
595 631 8.795513 CCATGTTCATACATAAATGAGCCAATA 58.204 33.333 0.00 0.00 43.07 1.90
596 632 7.256048 CCCATGTTCATACATAAATGAGCCAAT 60.256 37.037 0.00 0.00 43.07 3.16
597 633 6.040729 CCCATGTTCATACATAAATGAGCCAA 59.959 38.462 0.00 0.00 43.07 4.52
598 634 5.535783 CCCATGTTCATACATAAATGAGCCA 59.464 40.000 0.00 0.00 43.07 4.75
599 635 5.536161 ACCCATGTTCATACATAAATGAGCC 59.464 40.000 0.00 0.00 43.07 4.70
600 636 6.441274 CACCCATGTTCATACATAAATGAGC 58.559 40.000 0.00 0.00 43.07 4.26
601 637 6.772233 TCCACCCATGTTCATACATAAATGAG 59.228 38.462 0.00 0.00 43.07 2.90
602 638 6.667661 TCCACCCATGTTCATACATAAATGA 58.332 36.000 0.00 0.00 43.07 2.57
603 639 6.957920 TCCACCCATGTTCATACATAAATG 57.042 37.500 0.00 0.00 43.07 2.32
604 640 8.006564 AGATTCCACCCATGTTCATACATAAAT 58.993 33.333 0.00 0.00 43.07 1.40
605 641 7.285172 CAGATTCCACCCATGTTCATACATAAA 59.715 37.037 0.00 0.00 43.07 1.40
606 642 6.772233 CAGATTCCACCCATGTTCATACATAA 59.228 38.462 0.00 0.00 43.07 1.90
607 643 6.298361 CAGATTCCACCCATGTTCATACATA 58.702 40.000 0.00 0.00 43.07 2.29
608 644 5.135383 CAGATTCCACCCATGTTCATACAT 58.865 41.667 0.00 0.00 45.81 2.29
609 645 4.525996 CAGATTCCACCCATGTTCATACA 58.474 43.478 0.00 0.00 38.95 2.29
610 646 3.316308 GCAGATTCCACCCATGTTCATAC 59.684 47.826 0.00 0.00 0.00 2.39
611 647 3.053768 TGCAGATTCCACCCATGTTCATA 60.054 43.478 0.00 0.00 0.00 2.15
612 648 2.291735 TGCAGATTCCACCCATGTTCAT 60.292 45.455 0.00 0.00 0.00 2.57
613 649 1.075212 TGCAGATTCCACCCATGTTCA 59.925 47.619 0.00 0.00 0.00 3.18
614 650 1.838112 TGCAGATTCCACCCATGTTC 58.162 50.000 0.00 0.00 0.00 3.18
615 651 2.104967 CATGCAGATTCCACCCATGTT 58.895 47.619 0.00 0.00 0.00 2.71
616 652 1.687054 CCATGCAGATTCCACCCATGT 60.687 52.381 0.00 0.00 33.29 3.21
617 653 1.037493 CCATGCAGATTCCACCCATG 58.963 55.000 0.00 0.00 34.55 3.66
618 654 0.105862 CCCATGCAGATTCCACCCAT 60.106 55.000 0.00 0.00 0.00 4.00
619 655 1.307309 CCCATGCAGATTCCACCCA 59.693 57.895 0.00 0.00 0.00 4.51
620 656 1.039233 CACCCATGCAGATTCCACCC 61.039 60.000 0.00 0.00 0.00 4.61
621 657 1.039233 CCACCCATGCAGATTCCACC 61.039 60.000 0.00 0.00 0.00 4.61
622 658 0.034186 TCCACCCATGCAGATTCCAC 60.034 55.000 0.00 0.00 0.00 4.02
623 659 0.034186 GTCCACCCATGCAGATTCCA 60.034 55.000 0.00 0.00 0.00 3.53
634 670 1.474320 CGAAAACAGTCTGTCCACCCA 60.474 52.381 5.82 0.00 0.00 4.51
645 682 5.054477 ACATGTGCTACTAACGAAAACAGT 58.946 37.500 0.00 0.00 0.00 3.55
646 683 5.591643 ACATGTGCTACTAACGAAAACAG 57.408 39.130 0.00 0.00 0.00 3.16
648 685 5.379827 GGAACATGTGCTACTAACGAAAAC 58.620 41.667 3.21 0.00 0.00 2.43
672 709 2.164427 GTAACAACTCGTAGACGCTCG 58.836 52.381 0.00 0.00 39.60 5.03
748 2223 5.734720 CAGCACCCTCTTTCTATCTAACAA 58.265 41.667 0.00 0.00 0.00 2.83
762 2237 1.943340 GCTAACTAATGCAGCACCCTC 59.057 52.381 0.00 0.00 35.35 4.30
774 2249 9.979578 ATTTGTTTCACAATTGATGCTAACTAA 57.020 25.926 13.59 14.67 38.00 2.24
811 2286 1.794714 ACTGGGTCATAGCCTAGTGG 58.205 55.000 0.33 0.00 46.53 4.00
845 2320 4.678622 TCTGAACGCTAATCTTCGCAATA 58.321 39.130 0.00 0.00 0.00 1.90
850 2325 1.855360 GGCTCTGAACGCTAATCTTCG 59.145 52.381 0.00 0.00 0.00 3.79
864 2339 5.640189 AAGAAAACATTGATGAGGCTCTG 57.360 39.130 16.72 7.60 0.00 3.35
969 2457 0.109597 GCTGCACAACTTGGGAATCG 60.110 55.000 0.00 0.00 0.00 3.34
1036 2525 4.165372 ACTTGTCTTGGTAACCCTCTTCAA 59.835 41.667 0.00 0.00 0.00 2.69
1038 2527 4.065789 CACTTGTCTTGGTAACCCTCTTC 58.934 47.826 0.00 0.00 0.00 2.87
1095 2584 4.357947 TCTGCCTCGACGGTGCAC 62.358 66.667 8.80 8.80 34.25 4.57
1149 2645 1.916181 ACCAAGGCTGCTATTGTAGGT 59.084 47.619 14.07 5.54 0.00 3.08
1153 2649 2.838736 CGATACCAAGGCTGCTATTGT 58.161 47.619 14.07 4.65 0.00 2.71
1321 3180 3.843027 AGACCAGAGTCATCAATGGAAGT 59.157 43.478 2.53 0.00 46.15 3.01
1401 3260 4.994852 CGAAAAATCCCAGTAGAAGTGACA 59.005 41.667 0.00 0.00 0.00 3.58
1472 3331 3.637229 CTCCATGTTGTCTACTCCCGTAT 59.363 47.826 0.00 0.00 0.00 3.06
2187 5625 5.172687 TGAAACCAATACCAGCATCAGTA 57.827 39.130 0.00 0.00 0.00 2.74
2315 5784 4.774200 AGACCTTACAACACCCTATAACGT 59.226 41.667 0.00 0.00 0.00 3.99
2475 5944 3.712016 TGTAGCCACTAAATTCTGCCA 57.288 42.857 0.00 0.00 0.00 4.92
2476 5945 6.884280 ATATTGTAGCCACTAAATTCTGCC 57.116 37.500 0.00 0.00 0.00 4.85
2477 5946 7.645340 CACAATATTGTAGCCACTAAATTCTGC 59.355 37.037 20.39 0.00 39.91 4.26
2479 5948 8.052748 TCCACAATATTGTAGCCACTAAATTCT 58.947 33.333 20.39 0.00 39.91 2.40
2480 5949 8.220755 TCCACAATATTGTAGCCACTAAATTC 57.779 34.615 20.39 0.00 39.91 2.17
2482 5951 7.834181 ACTTCCACAATATTGTAGCCACTAAAT 59.166 33.333 20.39 0.00 39.91 1.40
2483 5952 7.172342 ACTTCCACAATATTGTAGCCACTAAA 58.828 34.615 20.39 2.67 39.91 1.85
2484 5953 6.717289 ACTTCCACAATATTGTAGCCACTAA 58.283 36.000 20.39 3.32 39.91 2.24
2485 5954 6.308015 ACTTCCACAATATTGTAGCCACTA 57.692 37.500 20.39 0.00 39.91 2.74
2486 5955 5.179452 ACTTCCACAATATTGTAGCCACT 57.821 39.130 20.39 0.09 39.91 4.00
2487 5956 6.995511 TTACTTCCACAATATTGTAGCCAC 57.004 37.500 20.39 0.00 39.91 5.01
2488 5957 7.831690 TCAATTACTTCCACAATATTGTAGCCA 59.168 33.333 20.39 6.02 39.91 4.75
2489 5958 8.220755 TCAATTACTTCCACAATATTGTAGCC 57.779 34.615 20.39 0.00 39.91 3.93
2496 5965 9.739276 TCTGTCTTTCAATTACTTCCACAATAT 57.261 29.630 0.00 0.00 0.00 1.28
2497 5966 9.739276 ATCTGTCTTTCAATTACTTCCACAATA 57.261 29.630 0.00 0.00 0.00 1.90
2531 6000 2.705127 AGTTGGGTCACATGGCAATTTT 59.295 40.909 0.00 0.00 0.00 1.82
2538 6007 2.220653 ATTGGAGTTGGGTCACATGG 57.779 50.000 0.00 0.00 0.00 3.66
2540 6009 1.895131 GCAATTGGAGTTGGGTCACAT 59.105 47.619 7.72 0.00 0.00 3.21
2550 6019 2.432146 TCGATAGCTGAGCAATTGGAGT 59.568 45.455 7.39 0.00 0.00 3.85
2563 6032 7.811117 ACAAGTCTAAGATAAGTCGATAGCT 57.189 36.000 0.00 0.00 0.00 3.32
2565 6034 8.775527 TGCTACAAGTCTAAGATAAGTCGATAG 58.224 37.037 0.00 0.00 0.00 2.08
2566 6035 8.557864 GTGCTACAAGTCTAAGATAAGTCGATA 58.442 37.037 0.00 0.00 0.00 2.92
2567 6036 7.419204 GTGCTACAAGTCTAAGATAAGTCGAT 58.581 38.462 0.00 0.00 0.00 3.59
2568 6037 6.183360 GGTGCTACAAGTCTAAGATAAGTCGA 60.183 42.308 0.00 0.00 0.00 4.20
2569 6038 5.972382 GGTGCTACAAGTCTAAGATAAGTCG 59.028 44.000 0.00 0.00 0.00 4.18
2570 6039 7.102847 AGGTGCTACAAGTCTAAGATAAGTC 57.897 40.000 0.00 0.00 0.00 3.01
2571 6040 7.483580 AAGGTGCTACAAGTCTAAGATAAGT 57.516 36.000 0.00 0.00 0.00 2.24
2572 6041 6.693545 CGAAGGTGCTACAAGTCTAAGATAAG 59.306 42.308 0.00 0.00 0.00 1.73
2595 6064 7.773224 ACACATTATAATCCTGACAAATTCCGA 59.227 33.333 0.00 0.00 0.00 4.55
2596 6065 7.930217 ACACATTATAATCCTGACAAATTCCG 58.070 34.615 0.00 0.00 0.00 4.30
2609 6078 4.273480 ACAGCCTCGCAACACATTATAATC 59.727 41.667 0.00 0.00 0.00 1.75
2613 6082 1.739466 CACAGCCTCGCAACACATTAT 59.261 47.619 0.00 0.00 0.00 1.28
2631 6100 8.352942 AGAATAGGAAAAACAACTGTCATTCAC 58.647 33.333 8.80 1.73 0.00 3.18
2654 6123 5.565592 ATGCGAAGACATGCAATAAAGAA 57.434 34.783 0.00 0.00 45.45 2.52
2655 6124 5.334319 CAATGCGAAGACATGCAATAAAGA 58.666 37.500 0.00 0.00 45.45 2.52
2656 6125 4.027132 GCAATGCGAAGACATGCAATAAAG 60.027 41.667 0.00 0.00 45.45 1.85
2664 6133 3.482722 AAGAAGCAATGCGAAGACATG 57.517 42.857 0.00 0.00 0.00 3.21
2669 6138 7.023575 ACTTTAATGTAAGAAGCAATGCGAAG 58.976 34.615 0.00 0.00 0.00 3.79
2694 6163 3.144894 AGGATCTCTCTGCCCCCTTTATA 59.855 47.826 0.00 0.00 0.00 0.98
2696 6165 1.295292 AGGATCTCTCTGCCCCCTTTA 59.705 52.381 0.00 0.00 0.00 1.85
2697 6166 0.045469 AGGATCTCTCTGCCCCCTTT 59.955 55.000 0.00 0.00 0.00 3.11
2712 6181 9.727859 CATCATCTTAGATCTCAATGAAAGGAT 57.272 33.333 14.85 3.84 30.76 3.24
2759 6228 6.061022 TGCTGATAAATCTAAAGACCCACA 57.939 37.500 0.00 0.00 0.00 4.17
2836 6308 0.226984 GCTTTGCGTGCGTTTTTCTG 59.773 50.000 0.00 0.00 0.00 3.02
2848 6320 4.415332 CTGGCTGGCTGCTTTGCG 62.415 66.667 16.14 0.00 42.39 4.85
2850 6322 2.341101 CCTCTGGCTGGCTGCTTTG 61.341 63.158 16.14 6.85 42.39 2.77
2864 6336 4.773013 TCAGTAAACCGTTTTTGTCCTCT 58.227 39.130 0.96 0.00 0.00 3.69
2870 6342 5.689961 CCAAGGATTCAGTAAACCGTTTTTG 59.310 40.000 0.96 2.30 0.00 2.44
2871 6343 5.595133 TCCAAGGATTCAGTAAACCGTTTTT 59.405 36.000 0.96 0.00 0.00 1.94
2872 6344 5.009310 GTCCAAGGATTCAGTAAACCGTTTT 59.991 40.000 0.96 0.00 0.00 2.43
2873 6345 4.517832 GTCCAAGGATTCAGTAAACCGTTT 59.482 41.667 1.40 1.40 0.00 3.60
2874 6346 4.070009 GTCCAAGGATTCAGTAAACCGTT 58.930 43.478 0.00 0.00 0.00 4.44
2875 6347 3.071892 TGTCCAAGGATTCAGTAAACCGT 59.928 43.478 0.00 0.00 0.00 4.83
2876 6348 3.670625 TGTCCAAGGATTCAGTAAACCG 58.329 45.455 0.00 0.00 0.00 4.44
2877 6349 3.440522 GCTGTCCAAGGATTCAGTAAACC 59.559 47.826 8.10 0.00 0.00 3.27
2878 6350 4.072131 TGCTGTCCAAGGATTCAGTAAAC 58.928 43.478 8.10 0.00 0.00 2.01
2879 6351 4.202461 ACTGCTGTCCAAGGATTCAGTAAA 60.202 41.667 14.76 1.44 33.00 2.01
2900 6372 3.508845 AGTAGGCATGGTTTGTTCACT 57.491 42.857 0.00 0.00 0.00 3.41
2902 6374 4.211125 TCAAAGTAGGCATGGTTTGTTCA 58.789 39.130 0.00 0.00 32.74 3.18
2904 6376 4.561326 GCATCAAAGTAGGCATGGTTTGTT 60.561 41.667 0.00 0.00 32.74 2.83
2905 6377 3.056607 GCATCAAAGTAGGCATGGTTTGT 60.057 43.478 0.00 0.00 32.74 2.83
2906 6378 3.514645 GCATCAAAGTAGGCATGGTTTG 58.485 45.455 0.00 1.93 0.00 2.93
2907 6379 2.164219 CGCATCAAAGTAGGCATGGTTT 59.836 45.455 0.00 0.00 0.00 3.27
2908 6380 1.745087 CGCATCAAAGTAGGCATGGTT 59.255 47.619 0.00 0.00 0.00 3.67
2909 6381 1.382522 CGCATCAAAGTAGGCATGGT 58.617 50.000 0.00 0.00 0.00 3.55
2910 6382 0.029834 GCGCATCAAAGTAGGCATGG 59.970 55.000 0.30 0.00 0.00 3.66
2911 6383 0.029834 GGCGCATCAAAGTAGGCATG 59.970 55.000 10.83 0.00 0.00 4.06
2912 6384 0.394216 TGGCGCATCAAAGTAGGCAT 60.394 50.000 10.83 0.00 32.43 4.40
2913 6385 1.002746 TGGCGCATCAAAGTAGGCA 60.003 52.632 10.83 0.00 35.01 4.75
2914 6386 1.026718 AGTGGCGCATCAAAGTAGGC 61.027 55.000 10.83 0.00 0.00 3.93
2915 6387 1.009829 GAGTGGCGCATCAAAGTAGG 58.990 55.000 10.83 0.00 0.00 3.18
2916 6388 1.009829 GGAGTGGCGCATCAAAGTAG 58.990 55.000 10.83 0.00 0.00 2.57
2917 6389 0.739462 CGGAGTGGCGCATCAAAGTA 60.739 55.000 10.83 0.00 0.00 2.24
2918 6390 2.034879 CGGAGTGGCGCATCAAAGT 61.035 57.895 10.83 0.00 0.00 2.66
2919 6391 1.741401 TCGGAGTGGCGCATCAAAG 60.741 57.895 10.83 0.00 0.00 2.77
2920 6392 2.032634 GTCGGAGTGGCGCATCAAA 61.033 57.895 10.83 0.00 0.00 2.69
2921 6393 2.434185 GTCGGAGTGGCGCATCAA 60.434 61.111 10.83 0.00 0.00 2.57
2922 6394 4.794439 CGTCGGAGTGGCGCATCA 62.794 66.667 10.83 0.00 0.00 3.07
2928 6400 3.973267 GAGACAGCGTCGGAGTGGC 62.973 68.421 0.00 0.00 37.67 5.01
2929 6401 2.179517 GAGACAGCGTCGGAGTGG 59.820 66.667 0.00 0.00 37.67 4.00
2930 6402 1.867919 AAGGAGACAGCGTCGGAGTG 61.868 60.000 0.00 0.00 37.67 3.51
2931 6403 1.604023 AAGGAGACAGCGTCGGAGT 60.604 57.895 0.00 0.00 37.67 3.85
2932 6404 1.153939 CAAGGAGACAGCGTCGGAG 60.154 63.158 0.00 0.00 37.67 4.63
2933 6405 2.962569 CAAGGAGACAGCGTCGGA 59.037 61.111 0.00 0.00 37.67 4.55
2934 6406 2.811317 GCAAGGAGACAGCGTCGG 60.811 66.667 0.00 0.00 37.67 4.79
2935 6407 2.049156 TGCAAGGAGACAGCGTCG 60.049 61.111 0.00 0.00 37.67 5.12
2936 6408 2.375766 CGTGCAAGGAGACAGCGTC 61.376 63.158 0.00 1.15 36.55 5.19
2937 6409 2.356313 CGTGCAAGGAGACAGCGT 60.356 61.111 0.00 0.00 36.55 5.07
2938 6410 2.356313 ACGTGCAAGGAGACAGCG 60.356 61.111 4.26 0.00 36.55 5.18
2939 6411 2.375766 CGACGTGCAAGGAGACAGC 61.376 63.158 4.26 0.00 0.00 4.40
2940 6412 0.730834 CTCGACGTGCAAGGAGACAG 60.731 60.000 4.26 0.00 0.00 3.51
2941 6413 1.285950 CTCGACGTGCAAGGAGACA 59.714 57.895 4.26 0.00 0.00 3.41
2942 6414 2.089349 GCTCGACGTGCAAGGAGAC 61.089 63.158 16.41 0.00 0.00 3.36
2943 6415 2.258591 GCTCGACGTGCAAGGAGA 59.741 61.111 16.41 1.99 0.00 3.71
2944 6416 3.175240 CGCTCGACGTGCAAGGAG 61.175 66.667 20.45 3.17 36.87 3.69
2977 6449 4.819761 TCAGATGCAGGTCGGCGC 62.820 66.667 0.00 0.00 36.28 6.53
2978 6450 2.584418 CTCAGATGCAGGTCGGCG 60.584 66.667 0.00 0.00 36.28 6.46
2979 6451 1.812922 CACTCAGATGCAGGTCGGC 60.813 63.158 0.00 0.00 0.00 5.54
2980 6452 1.153489 CCACTCAGATGCAGGTCGG 60.153 63.158 0.00 0.00 0.00 4.79
2981 6453 1.812922 GCCACTCAGATGCAGGTCG 60.813 63.158 0.00 0.00 0.00 4.79
2982 6454 1.812922 CGCCACTCAGATGCAGGTC 60.813 63.158 0.00 0.00 0.00 3.85
2983 6455 2.267006 CGCCACTCAGATGCAGGT 59.733 61.111 0.00 0.00 0.00 4.00
2984 6456 3.200593 GCGCCACTCAGATGCAGG 61.201 66.667 0.00 0.00 0.00 4.85
2985 6457 3.200593 GGCGCCACTCAGATGCAG 61.201 66.667 24.80 0.00 0.00 4.41
2986 6458 3.709633 AGGCGCCACTCAGATGCA 61.710 61.111 31.54 0.00 0.00 3.96
2987 6459 3.200593 CAGGCGCCACTCAGATGC 61.201 66.667 31.54 0.00 0.00 3.91
2988 6460 2.513204 CCAGGCGCCACTCAGATG 60.513 66.667 31.54 16.19 0.00 2.90
2989 6461 4.479993 GCCAGGCGCCACTCAGAT 62.480 66.667 31.54 1.71 0.00 2.90
3000 6472 3.443925 GAAAGCGGAAGGCCAGGC 61.444 66.667 5.01 1.26 45.17 4.85
3001 6473 2.751837 GGAAAGCGGAAGGCCAGG 60.752 66.667 5.01 0.00 45.17 4.45
3002 6474 2.034066 TGGAAAGCGGAAGGCCAG 59.966 61.111 5.01 0.00 45.17 4.85
3003 6475 2.034066 CTGGAAAGCGGAAGGCCA 59.966 61.111 5.01 0.00 45.17 5.36
3004 6476 3.443925 GCTGGAAAGCGGAAGGCC 61.444 66.667 0.00 0.00 45.17 5.19
3016 6488 4.373116 GCGACCTTCCACGCTGGA 62.373 66.667 0.00 3.02 46.61 3.86
3021 6493 4.003788 ACCCTGCGACCTTCCACG 62.004 66.667 0.00 0.00 0.00 4.94
3022 6494 2.358737 CACCCTGCGACCTTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
3023 6495 4.329545 GCACCCTGCGACCTTCCA 62.330 66.667 0.00 0.00 31.71 3.53
3032 6504 3.807538 CAGTCGCATGCACCCTGC 61.808 66.667 19.57 0.49 45.29 4.85
3033 6505 1.434622 GATCAGTCGCATGCACCCTG 61.435 60.000 19.57 18.39 0.00 4.45
3034 6506 1.153289 GATCAGTCGCATGCACCCT 60.153 57.895 19.57 6.72 0.00 4.34
3035 6507 1.434622 CTGATCAGTCGCATGCACCC 61.435 60.000 19.57 4.22 0.00 4.61
3036 6508 0.742281 ACTGATCAGTCGCATGCACC 60.742 55.000 22.89 7.01 36.92 5.01
3037 6509 0.372679 CACTGATCAGTCGCATGCAC 59.627 55.000 25.58 14.60 40.20 4.57
3038 6510 1.363885 GCACTGATCAGTCGCATGCA 61.364 55.000 29.47 1.73 40.20 3.96
3039 6511 1.088340 AGCACTGATCAGTCGCATGC 61.088 55.000 32.68 27.83 40.20 4.06
3040 6512 0.651031 CAGCACTGATCAGTCGCATG 59.349 55.000 32.68 26.24 40.20 4.06
3041 6513 0.461516 CCAGCACTGATCAGTCGCAT 60.462 55.000 32.68 22.35 40.20 4.73
3042 6514 1.079612 CCAGCACTGATCAGTCGCA 60.080 57.895 32.68 1.99 40.20 5.10
3043 6515 0.671781 AACCAGCACTGATCAGTCGC 60.672 55.000 28.27 28.27 40.20 5.19
3044 6516 1.354040 GAACCAGCACTGATCAGTCG 58.646 55.000 25.58 20.11 40.20 4.18
3045 6517 1.354040 CGAACCAGCACTGATCAGTC 58.646 55.000 25.58 18.77 40.20 3.51
3046 6518 0.671781 GCGAACCAGCACTGATCAGT 60.672 55.000 22.89 22.89 43.61 3.41
3047 6519 1.690283 CGCGAACCAGCACTGATCAG 61.690 60.000 21.37 21.37 36.85 2.90
3048 6520 1.737735 CGCGAACCAGCACTGATCA 60.738 57.895 0.00 0.00 36.85 2.92
3049 6521 3.084579 CGCGAACCAGCACTGATC 58.915 61.111 0.00 0.00 36.85 2.92
3050 6522 3.121030 GCGCGAACCAGCACTGAT 61.121 61.111 12.10 0.00 36.85 2.90
3057 6529 3.843240 GAAGAGCGCGCGAACCAG 61.843 66.667 37.18 2.99 0.00 4.00
3058 6530 4.357947 AGAAGAGCGCGCGAACCA 62.358 61.111 37.18 0.00 0.00 3.67
3059 6531 3.843240 CAGAAGAGCGCGCGAACC 61.843 66.667 37.18 20.78 0.00 3.62
3060 6532 2.372690 TTCAGAAGAGCGCGCGAAC 61.373 57.895 37.18 25.22 0.00 3.95
3061 6533 2.049526 TTCAGAAGAGCGCGCGAA 60.050 55.556 37.18 18.69 0.00 4.70
3062 6534 2.805353 GTTCAGAAGAGCGCGCGA 60.805 61.111 37.18 13.14 0.00 5.87
3063 6535 2.783064 GAGTTCAGAAGAGCGCGCG 61.783 63.158 28.44 28.44 0.00 6.86
3064 6536 1.284982 TTGAGTTCAGAAGAGCGCGC 61.285 55.000 26.66 26.66 0.00 6.86
3065 6537 0.436531 GTTGAGTTCAGAAGAGCGCG 59.563 55.000 0.00 0.00 0.00 6.86
3066 6538 1.193426 GTGTTGAGTTCAGAAGAGCGC 59.807 52.381 0.00 0.00 0.00 5.92
3067 6539 1.795286 GGTGTTGAGTTCAGAAGAGCG 59.205 52.381 0.00 0.00 0.00 5.03
3068 6540 3.063485 GAGGTGTTGAGTTCAGAAGAGC 58.937 50.000 0.00 0.00 0.00 4.09
3069 6541 4.327982 TGAGGTGTTGAGTTCAGAAGAG 57.672 45.455 0.00 0.00 0.00 2.85
3070 6542 4.963318 ATGAGGTGTTGAGTTCAGAAGA 57.037 40.909 0.00 0.00 0.00 2.87
3071 6543 4.151335 CGAATGAGGTGTTGAGTTCAGAAG 59.849 45.833 0.00 0.00 0.00 2.85
3072 6544 4.058124 CGAATGAGGTGTTGAGTTCAGAA 58.942 43.478 0.00 0.00 0.00 3.02
3073 6545 3.653344 CGAATGAGGTGTTGAGTTCAGA 58.347 45.455 0.00 0.00 0.00 3.27
3074 6546 2.158449 GCGAATGAGGTGTTGAGTTCAG 59.842 50.000 0.00 0.00 0.00 3.02
3075 6547 2.143122 GCGAATGAGGTGTTGAGTTCA 58.857 47.619 0.00 0.00 0.00 3.18
3076 6548 1.126846 CGCGAATGAGGTGTTGAGTTC 59.873 52.381 0.00 0.00 0.00 3.01
3077 6549 1.148310 CGCGAATGAGGTGTTGAGTT 58.852 50.000 0.00 0.00 0.00 3.01
3078 6550 1.291877 GCGCGAATGAGGTGTTGAGT 61.292 55.000 12.10 0.00 0.00 3.41
3079 6551 1.291184 TGCGCGAATGAGGTGTTGAG 61.291 55.000 12.10 0.00 0.00 3.02
3080 6552 1.301322 TGCGCGAATGAGGTGTTGA 60.301 52.632 12.10 0.00 0.00 3.18
3081 6553 1.154413 GTGCGCGAATGAGGTGTTG 60.154 57.895 12.10 0.00 0.00 3.33
3082 6554 2.325082 GGTGCGCGAATGAGGTGTT 61.325 57.895 12.10 0.00 0.00 3.32
3083 6555 2.742372 GGTGCGCGAATGAGGTGT 60.742 61.111 12.10 0.00 0.00 4.16
3084 6556 2.741985 TGGTGCGCGAATGAGGTG 60.742 61.111 12.10 0.00 0.00 4.00
3085 6557 2.742372 GTGGTGCGCGAATGAGGT 60.742 61.111 12.10 0.00 0.00 3.85
3086 6558 3.499737 GGTGGTGCGCGAATGAGG 61.500 66.667 12.10 0.00 0.00 3.86
3087 6559 3.499737 GGGTGGTGCGCGAATGAG 61.500 66.667 12.10 0.00 0.00 2.90
3088 6560 4.321966 TGGGTGGTGCGCGAATGA 62.322 61.111 12.10 0.00 0.00 2.57
3089 6561 4.101790 GTGGGTGGTGCGCGAATG 62.102 66.667 12.10 0.00 0.00 2.67
3095 6567 4.394712 GAGGAGGTGGGTGGTGCG 62.395 72.222 0.00 0.00 0.00 5.34
3096 6568 4.394712 CGAGGAGGTGGGTGGTGC 62.395 72.222 0.00 0.00 0.00 5.01
3097 6569 2.923035 ACGAGGAGGTGGGTGGTG 60.923 66.667 0.00 0.00 0.00 4.17
3098 6570 2.603776 GACGAGGAGGTGGGTGGT 60.604 66.667 0.00 0.00 0.00 4.16
3099 6571 3.760035 CGACGAGGAGGTGGGTGG 61.760 72.222 0.00 0.00 0.00 4.61
3100 6572 3.760035 CCGACGAGGAGGTGGGTG 61.760 72.222 0.00 0.00 45.00 4.61
3103 6575 3.827898 GAGCCGACGAGGAGGTGG 61.828 72.222 0.00 0.00 45.00 4.61
3104 6576 3.827898 GGAGCCGACGAGGAGGTG 61.828 72.222 0.00 0.00 45.00 4.00
3105 6577 4.361971 TGGAGCCGACGAGGAGGT 62.362 66.667 0.00 0.00 45.00 3.85
3106 6578 3.522731 CTGGAGCCGACGAGGAGG 61.523 72.222 0.00 0.00 45.00 4.30
3107 6579 4.200283 GCTGGAGCCGACGAGGAG 62.200 72.222 0.00 0.00 45.00 3.69
3109 6581 4.069232 TTGCTGGAGCCGACGAGG 62.069 66.667 0.00 0.00 44.97 4.63
3110 6582 2.811317 GTTGCTGGAGCCGACGAG 60.811 66.667 0.00 0.00 41.18 4.18
3111 6583 3.303135 AGTTGCTGGAGCCGACGA 61.303 61.111 0.00 0.00 41.18 4.20
3112 6584 3.114616 CAGTTGCTGGAGCCGACG 61.115 66.667 0.00 0.00 41.18 5.12
3113 6585 3.426568 GCAGTTGCTGGAGCCGAC 61.427 66.667 0.00 0.00 41.18 4.79
3124 6596 1.091771 AATCCGATCGGCAGCAGTTG 61.092 55.000 29.62 2.35 34.68 3.16
3125 6597 1.091771 CAATCCGATCGGCAGCAGTT 61.092 55.000 29.62 12.96 34.68 3.16
3126 6598 1.522355 CAATCCGATCGGCAGCAGT 60.522 57.895 29.62 8.61 34.68 4.40
3127 6599 2.890109 GCAATCCGATCGGCAGCAG 61.890 63.158 29.62 16.72 34.68 4.24
3128 6600 2.896854 GCAATCCGATCGGCAGCA 60.897 61.111 29.62 12.82 34.68 4.41
3129 6601 3.654020 GGCAATCCGATCGGCAGC 61.654 66.667 29.62 27.83 34.68 5.25
3130 6602 2.974698 GGGCAATCCGATCGGCAG 60.975 66.667 29.62 20.51 34.68 4.85
3131 6603 3.336814 TTGGGCAATCCGATCGGCA 62.337 57.895 29.62 17.03 38.76 5.69
3132 6604 2.515991 TTGGGCAATCCGATCGGC 60.516 61.111 29.62 16.99 38.76 5.54
3133 6605 1.153168 AGTTGGGCAATCCGATCGG 60.153 57.895 28.62 28.62 38.76 4.18
3134 6606 1.439353 CCAGTTGGGCAATCCGATCG 61.439 60.000 8.51 8.51 38.76 3.69
3135 6607 2.408333 CCAGTTGGGCAATCCGATC 58.592 57.895 0.00 0.00 38.76 3.69
3136 6608 4.664062 CCAGTTGGGCAATCCGAT 57.336 55.556 0.00 0.00 38.76 4.18
3146 6618 0.967380 GGCACAATCTCCCCAGTTGG 60.967 60.000 0.00 0.00 0.00 3.77
3147 6619 1.308069 CGGCACAATCTCCCCAGTTG 61.308 60.000 0.00 0.00 0.00 3.16
3148 6620 1.002134 CGGCACAATCTCCCCAGTT 60.002 57.895 0.00 0.00 0.00 3.16
3149 6621 2.671070 CGGCACAATCTCCCCAGT 59.329 61.111 0.00 0.00 0.00 4.00
3150 6622 2.825836 GCGGCACAATCTCCCCAG 60.826 66.667 0.00 0.00 0.00 4.45
3151 6623 4.776322 CGCGGCACAATCTCCCCA 62.776 66.667 0.00 0.00 0.00 4.96
3153 6625 3.757248 ATCCGCGGCACAATCTCCC 62.757 63.158 23.51 0.00 0.00 4.30
3154 6626 2.203070 ATCCGCGGCACAATCTCC 60.203 61.111 23.51 0.00 0.00 3.71
3155 6627 3.017323 CATCCGCGGCACAATCTC 58.983 61.111 23.51 0.00 0.00 2.75
3156 6628 3.204827 GCATCCGCGGCACAATCT 61.205 61.111 23.51 0.00 0.00 2.40
3157 6629 3.173390 GAGCATCCGCGGCACAATC 62.173 63.158 23.51 10.84 45.49 2.67
3158 6630 3.204827 GAGCATCCGCGGCACAAT 61.205 61.111 23.51 5.58 45.49 2.71
3169 6641 1.301009 GGGATTCCGTCGGAGCATC 60.301 63.158 14.79 14.91 31.21 3.91
3170 6642 2.808206 GGGGATTCCGTCGGAGCAT 61.808 63.158 14.79 6.08 31.21 3.79
3201 6673 4.437682 ACTCACTGATTGGGAAGAAACA 57.562 40.909 0.00 0.00 0.00 2.83
3210 6682 9.132923 TCCTAGTAATTAGTACTCACTGATTGG 57.867 37.037 0.00 0.00 42.37 3.16
3252 6724 4.519730 GCCACTAGGTACGATCTGAAGTAT 59.480 45.833 0.00 0.00 37.19 2.12
3253 6725 3.881688 GCCACTAGGTACGATCTGAAGTA 59.118 47.826 0.00 0.00 37.19 2.24
3255 6727 2.688446 TGCCACTAGGTACGATCTGAAG 59.312 50.000 0.00 0.00 37.19 3.02
3256 6728 2.426024 GTGCCACTAGGTACGATCTGAA 59.574 50.000 0.00 0.00 40.76 3.02
3258 6730 2.493713 GTGCCACTAGGTACGATCTG 57.506 55.000 0.00 0.00 40.76 2.90
3277 6749 0.592247 GTTGGTGCTGAAACGTGCTG 60.592 55.000 0.00 0.00 0.00 4.41
3280 6752 2.270275 TTTGTTGGTGCTGAAACGTG 57.730 45.000 0.00 0.00 0.00 4.49
3281 6753 2.425312 TCATTTGTTGGTGCTGAAACGT 59.575 40.909 0.00 0.00 0.00 3.99
3282 6754 3.077229 TCATTTGTTGGTGCTGAAACG 57.923 42.857 0.00 0.00 0.00 3.60
3283 6755 5.049167 TGAATCATTTGTTGGTGCTGAAAC 58.951 37.500 0.00 0.00 0.00 2.78
3290 6762 4.681025 CGGAAACTGAATCATTTGTTGGTG 59.319 41.667 0.00 0.00 0.00 4.17
3295 6767 5.982890 ATTCCGGAAACTGAATCATTTGT 57.017 34.783 23.08 0.00 39.74 2.83
3306 6778 4.403734 ACCACATTTGTATTCCGGAAACT 58.596 39.130 23.08 8.43 0.00 2.66
3317 6789 5.532779 TGCATGAAGTGTAACCACATTTGTA 59.467 36.000 0.00 0.00 44.39 2.41
3324 6796 3.435671 GGTACTGCATGAAGTGTAACCAC 59.564 47.826 17.28 5.12 42.17 4.16
3326 6798 3.007635 GGGTACTGCATGAAGTGTAACC 58.992 50.000 17.28 15.42 37.80 2.85
3327 6799 3.435671 GTGGGTACTGCATGAAGTGTAAC 59.564 47.826 17.28 6.64 0.00 2.50
3328 6800 3.326588 AGTGGGTACTGCATGAAGTGTAA 59.673 43.478 17.28 0.00 35.34 2.41
3330 6802 1.699634 AGTGGGTACTGCATGAAGTGT 59.300 47.619 17.28 1.31 35.34 3.55
3333 6805 2.768253 TGAGTGGGTACTGCATGAAG 57.232 50.000 0.00 0.00 37.25 3.02
3340 6812 4.899502 ACTCTGAAATTGAGTGGGTACTG 58.100 43.478 0.00 0.00 42.46 2.74
3357 6829 4.397481 TCCTGATTCTATGTGCACTCTG 57.603 45.455 19.41 9.59 0.00 3.35
3358 6830 5.181748 GTTTCCTGATTCTATGTGCACTCT 58.818 41.667 19.41 8.06 0.00 3.24
3373 6858 6.157820 TGAATATGTAGGGTGATGTTTCCTGA 59.842 38.462 0.00 0.00 32.46 3.86
3377 6862 7.502226 TCCAATGAATATGTAGGGTGATGTTTC 59.498 37.037 0.00 0.00 0.00 2.78
3382 6867 7.758609 TCAATCCAATGAATATGTAGGGTGAT 58.241 34.615 0.00 0.00 0.00 3.06
3387 6872 9.948964 TGTATCTCAATCCAATGAATATGTAGG 57.051 33.333 0.00 0.00 0.00 3.18
3390 6875 8.737175 GCATGTATCTCAATCCAATGAATATGT 58.263 33.333 0.00 0.00 0.00 2.29
3417 6902 3.059884 CGACTCACTATTGTGCAAGTGT 58.940 45.455 14.32 0.00 42.96 3.55
3422 6907 3.945981 TTACCGACTCACTATTGTGCA 57.054 42.857 2.09 0.00 43.49 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.