Multiple sequence alignment - TraesCS6A01G363400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G363400 chr6A 100.000 4823 0 0 1 4823 592535400 592540222 0.000000e+00 8907.0
1 TraesCS6A01G363400 chr6A 88.743 915 96 3 2352 3262 592500806 592499895 0.000000e+00 1112.0
2 TraesCS6A01G363400 chr6A 87.723 953 101 7 2322 3268 592493934 592492992 0.000000e+00 1098.0
3 TraesCS6A01G363400 chr6A 93.256 430 29 0 1201 1630 592501854 592501425 6.810000e-178 634.0
4 TraesCS6A01G363400 chr6A 90.261 421 40 1 3331 3750 592492900 592492480 2.540000e-152 549.0
5 TraesCS6A01G363400 chr6A 88.409 440 51 0 1201 1640 592495126 592494687 9.190000e-147 531.0
6 TraesCS6A01G363400 chr6A 87.150 428 50 4 3329 3755 592499723 592499300 9.390000e-132 481.0
7 TraesCS6A01G363400 chr6A 83.442 459 76 0 1750 2208 592477985 592477527 1.240000e-115 427.0
8 TraesCS6A01G363400 chr6A 77.931 290 44 14 3970 4251 592551266 592551543 3.860000e-36 163.0
9 TraesCS6A01G363400 chr6D 91.644 3734 165 50 991 4673 445852063 445855700 0.000000e+00 5031.0
10 TraesCS6A01G363400 chr6D 88.000 950 95 10 2330 3268 445811769 445810828 0.000000e+00 1105.0
11 TraesCS6A01G363400 chr6D 93.002 543 27 8 660 1202 445851701 445852232 0.000000e+00 782.0
12 TraesCS6A01G363400 chr6D 90.315 444 43 0 1201 1644 445812944 445812501 2.500000e-162 582.0
13 TraesCS6A01G363400 chr6D 89.786 421 42 1 3331 3750 445810739 445810319 5.490000e-149 538.0
14 TraesCS6A01G363400 chr6D 88.785 428 48 0 1201 1628 445820853 445820426 4.280000e-145 525.0
15 TraesCS6A01G363400 chr6D 86.437 435 55 4 3323 3755 445797765 445797333 1.570000e-129 473.0
16 TraesCS6A01G363400 chr6D 86.730 422 56 0 1750 2171 445799405 445798984 2.030000e-128 470.0
17 TraesCS6A01G363400 chr6D 87.406 397 47 2 1750 2143 445893245 445893641 2.050000e-123 453.0
18 TraesCS6A01G363400 chr6D 79.899 592 91 17 3821 4386 445797223 445796634 4.490000e-110 409.0
19 TraesCS6A01G363400 chr6D 95.506 178 5 2 220 395 445850963 445851139 1.020000e-71 281.0
20 TraesCS6A01G363400 chr6D 98.230 113 2 0 108 220 445850722 445850834 1.060000e-46 198.0
21 TraesCS6A01G363400 chr6D 84.706 170 26 0 1033 1202 445852021 445852190 2.310000e-38 171.0
22 TraesCS6A01G363400 chr6D 79.167 240 38 8 4148 4385 445895579 445895808 6.460000e-34 156.0
23 TraesCS6A01G363400 chr6D 88.983 118 11 2 435 551 445851290 445851406 1.400000e-30 145.0
24 TraesCS6A01G363400 chr6D 81.548 168 31 0 993 1160 445852107 445852274 6.510000e-29 139.0
25 TraesCS6A01G363400 chr6D 80.357 168 23 4 3906 4065 445817915 445817750 8.480000e-23 119.0
26 TraesCS6A01G363400 chr6D 77.725 211 27 13 3985 4180 445810148 445809943 1.420000e-20 111.0
27 TraesCS6A01G363400 chr6B 92.100 2595 129 30 1737 4301 673616208 673613660 0.000000e+00 3587.0
28 TraesCS6A01G363400 chr6B 90.169 885 84 2 2379 3263 673757660 673758541 0.000000e+00 1149.0
29 TraesCS6A01G363400 chr6B 87.721 961 98 10 2319 3268 672620484 672619533 0.000000e+00 1103.0
30 TraesCS6A01G363400 chr6B 87.409 961 98 11 2319 3268 673697564 673698512 0.000000e+00 1083.0
31 TraesCS6A01G363400 chr6B 87.120 955 95 18 2332 3267 672506927 672505982 0.000000e+00 1057.0
32 TraesCS6A01G363400 chr6B 93.217 575 34 1 1075 1649 673617003 673616434 0.000000e+00 841.0
33 TraesCS6A01G363400 chr6B 85.595 597 67 16 3323 3911 673758760 673759345 4.130000e-170 608.0
34 TraesCS6A01G363400 chr6B 89.796 441 45 0 1201 1641 673696420 673696860 2.520000e-157 566.0
35 TraesCS6A01G363400 chr6B 90.000 430 43 0 1201 1630 672621661 672621232 1.520000e-154 556.0
36 TraesCS6A01G363400 chr6B 89.549 421 43 1 3331 3750 672619444 672619024 2.560000e-147 532.0
37 TraesCS6A01G363400 chr6B 89.549 421 43 1 3331 3750 673698601 673699021 2.560000e-147 532.0
38 TraesCS6A01G363400 chr6B 88.479 434 50 0 1195 1628 673688369 673688802 4.280000e-145 525.0
39 TraesCS6A01G363400 chr6B 86.577 447 57 1 1722 2165 673757044 673757490 1.560000e-134 490.0
40 TraesCS6A01G363400 chr6B 87.940 398 43 4 1750 2143 672944372 672944768 9.450000e-127 464.0
41 TraesCS6A01G363400 chr6B 87.909 397 45 2 1750 2143 673609329 673608933 9.450000e-127 464.0
42 TraesCS6A01G363400 chr6B 83.226 465 67 5 1750 2207 673366266 673365806 2.690000e-112 416.0
43 TraesCS6A01G363400 chr6B 79.015 467 71 18 3933 4387 673759341 673759792 1.310000e-75 294.0
44 TraesCS6A01G363400 chr6B 77.391 460 57 25 4236 4660 672896254 672896701 3.750000e-56 230.0
45 TraesCS6A01G363400 chr6B 77.119 472 60 26 4236 4671 672946922 672947381 3.750000e-56 230.0
46 TraesCS6A01G363400 chr6B 77.577 388 52 17 4236 4600 673606883 673606508 8.180000e-48 202.0
47 TraesCS6A01G363400 chr6B 79.344 305 42 9 818 1121 673617157 673616873 1.370000e-45 195.0
48 TraesCS6A01G363400 chr6B 91.603 131 11 0 1033 1163 673617003 673616873 1.070000e-41 182.0
49 TraesCS6A01G363400 chr6B 83.616 177 28 1 4211 4387 672502959 672502784 1.070000e-36 165.0
50 TraesCS6A01G363400 chr6B 73.757 503 94 28 3906 4387 672625629 672625144 3.860000e-36 163.0
51 TraesCS6A01G363400 chr6B 78.261 207 32 10 3985 4180 672618842 672618638 2.360000e-23 121.0
52 TraesCS6A01G363400 chr6B 81.022 137 16 8 4257 4387 672633444 672633312 3.070000e-17 100.0
53 TraesCS6A01G363400 chr6B 83.810 105 10 4 4574 4671 673358733 673358629 5.140000e-15 93.5
54 TraesCS6A01G363400 chr6B 98.000 50 1 0 390 439 138675459 138675508 2.390000e-13 87.9
55 TraesCS6A01G363400 chr6B 90.476 63 5 1 379 441 632162717 632162656 1.110000e-11 82.4
56 TraesCS6A01G363400 chr2B 100.000 50 0 0 393 442 198357753 198357704 5.140000e-15 93.5
57 TraesCS6A01G363400 chr7A 100.000 49 0 0 393 441 646582908 646582860 1.850000e-14 91.6
58 TraesCS6A01G363400 chr4A 96.364 55 2 0 393 447 734576185 734576131 1.850000e-14 91.6
59 TraesCS6A01G363400 chr4A 84.444 90 9 3 393 480 586667964 586667878 3.090000e-12 84.2
60 TraesCS6A01G363400 chr1B 93.443 61 4 0 390 450 582724623 582724683 1.850000e-14 91.6
61 TraesCS6A01G363400 chr3D 96.296 54 2 0 393 446 582122978 582122925 6.650000e-14 89.8
62 TraesCS6A01G363400 chr5A 85.057 87 11 2 379 464 196252062 196252147 2.390000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G363400 chr6A 592535400 592540222 4822 False 8907.000000 8907 100.000000 1 4823 1 chr6A.!!$F1 4822
1 TraesCS6A01G363400 chr6A 592499300 592501854 2554 True 742.333333 1112 89.716333 1201 3755 3 chr6A.!!$R3 2554
2 TraesCS6A01G363400 chr6A 592492480 592495126 2646 True 726.000000 1098 88.797667 1201 3750 3 chr6A.!!$R2 2549
3 TraesCS6A01G363400 chr6D 445850722 445855700 4978 False 963.857143 5031 90.517000 108 4673 7 chr6D.!!$F1 4565
4 TraesCS6A01G363400 chr6D 445809943 445812944 3001 True 584.000000 1105 86.456500 1201 4180 4 chr6D.!!$R2 2979
5 TraesCS6A01G363400 chr6D 445796634 445799405 2771 True 450.666667 473 84.355333 1750 4386 3 chr6D.!!$R1 2636
6 TraesCS6A01G363400 chr6D 445817750 445820853 3103 True 322.000000 525 84.571000 1201 4065 2 chr6D.!!$R3 2864
7 TraesCS6A01G363400 chr6D 445893245 445895808 2563 False 304.500000 453 83.286500 1750 4385 2 chr6D.!!$F2 2635
8 TraesCS6A01G363400 chr6B 673613660 673617157 3497 True 1201.250000 3587 89.066000 818 4301 4 chr6B.!!$R8 3483
9 TraesCS6A01G363400 chr6B 673696420 673699021 2601 False 727.000000 1083 88.918000 1201 3750 3 chr6B.!!$F5 2549
10 TraesCS6A01G363400 chr6B 673757044 673759792 2748 False 635.250000 1149 85.339000 1722 4387 4 chr6B.!!$F6 2665
11 TraesCS6A01G363400 chr6B 672502784 672506927 4143 True 611.000000 1057 85.368000 2332 4387 2 chr6B.!!$R5 2055
12 TraesCS6A01G363400 chr6B 672618638 672625629 6991 True 495.000000 1103 83.857600 1201 4387 5 chr6B.!!$R6 3186
13 TraesCS6A01G363400 chr6B 672944372 672947381 3009 False 347.000000 464 82.529500 1750 4671 2 chr6B.!!$F4 2921
14 TraesCS6A01G363400 chr6B 673606508 673609329 2821 True 333.000000 464 82.743000 1750 4600 2 chr6B.!!$R7 2850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.249073 ATCCTCAATTCGGCGACTCG 60.249 55.000 10.16 0.0 0.00 4.18 F
1183 1654 0.107703 GGCAATGGATCTGGACGACA 60.108 55.000 0.00 0.0 0.00 4.35 F
1675 4738 1.100510 CACCAATCTCGACTCCGGTA 58.899 55.000 0.00 0.0 36.24 4.02 F
2540 5844 1.137086 CGACCCGATTCTCCTCACAAT 59.863 52.381 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 4985 0.108992 GAACACCGTCAGGCGTATGA 60.109 55.000 3.09 0.00 42.76 2.15 R
2191 5299 0.550914 TGGGCTGGACTGAAACAACT 59.449 50.000 0.00 0.00 0.00 3.16 R
2898 6214 2.590092 GTGAGGCCGGCTTGGTAT 59.410 61.111 28.56 5.41 41.21 2.73 R
4131 9996 0.179073 GAGACACAGTGCACACAGGT 60.179 55.000 21.04 11.30 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.898829 TGAAAATGCCGAATCCACTATG 57.101 40.909 0.00 0.00 0.00 2.23
26 27 2.550830 ATGCCGAATCCACTATGGTC 57.449 50.000 0.00 0.00 39.03 4.02
27 28 1.199615 TGCCGAATCCACTATGGTCA 58.800 50.000 0.00 0.00 39.03 4.02
28 29 1.557371 TGCCGAATCCACTATGGTCAA 59.443 47.619 0.00 0.00 39.03 3.18
29 30 2.172505 TGCCGAATCCACTATGGTCAAT 59.827 45.455 0.00 0.00 39.03 2.57
30 31 2.808543 GCCGAATCCACTATGGTCAATC 59.191 50.000 0.00 0.00 39.03 2.67
31 32 3.403038 CCGAATCCACTATGGTCAATCC 58.597 50.000 0.00 0.00 39.03 3.01
32 33 3.071602 CCGAATCCACTATGGTCAATCCT 59.928 47.826 0.00 0.00 39.03 3.24
33 34 4.310769 CGAATCCACTATGGTCAATCCTC 58.689 47.826 0.00 0.00 39.03 3.71
34 35 4.202253 CGAATCCACTATGGTCAATCCTCA 60.202 45.833 0.00 0.00 39.03 3.86
36 37 5.919348 ATCCACTATGGTCAATCCTCAAT 57.081 39.130 0.00 0.00 39.03 2.57
37 38 5.715439 TCCACTATGGTCAATCCTCAATT 57.285 39.130 0.00 0.00 39.03 2.32
38 39 5.684704 TCCACTATGGTCAATCCTCAATTC 58.315 41.667 0.00 0.00 39.03 2.17
39 40 4.512944 CCACTATGGTCAATCCTCAATTCG 59.487 45.833 0.00 0.00 37.07 3.34
40 41 4.512944 CACTATGGTCAATCCTCAATTCGG 59.487 45.833 0.00 0.00 37.07 4.30
41 42 1.750193 TGGTCAATCCTCAATTCGGC 58.250 50.000 0.00 0.00 37.07 5.54
42 43 0.657840 GGTCAATCCTCAATTCGGCG 59.342 55.000 0.00 0.00 0.00 6.46
43 44 1.651987 GTCAATCCTCAATTCGGCGA 58.348 50.000 4.99 4.99 0.00 5.54
44 45 1.327764 GTCAATCCTCAATTCGGCGAC 59.672 52.381 10.16 0.00 0.00 5.19
45 46 1.207089 TCAATCCTCAATTCGGCGACT 59.793 47.619 10.16 0.00 0.00 4.18
47 48 0.249073 ATCCTCAATTCGGCGACTCG 60.249 55.000 10.16 0.00 0.00 4.18
48 49 1.153823 CCTCAATTCGGCGACTCGT 60.154 57.895 10.16 0.00 0.00 4.18
49 50 1.413767 CCTCAATTCGGCGACTCGTG 61.414 60.000 10.16 5.49 0.00 4.35
50 51 0.732880 CTCAATTCGGCGACTCGTGT 60.733 55.000 10.16 0.00 0.00 4.49
51 52 0.731514 TCAATTCGGCGACTCGTGTC 60.732 55.000 10.16 7.56 39.70 3.67
52 53 1.006825 CAATTCGGCGACTCGTGTCA 61.007 55.000 10.16 0.00 43.06 3.58
53 54 0.319211 AATTCGGCGACTCGTGTCAA 60.319 50.000 10.16 4.75 43.06 3.18
56 57 0.528033 TCGGCGACTCGTGTCAAAAA 60.528 50.000 17.02 0.00 43.06 1.94
78 79 8.492673 AAAAATAATGTCGCTCATGAGTTCTA 57.507 30.769 23.38 9.11 36.81 2.10
79 80 7.470289 AAATAATGTCGCTCATGAGTTCTAC 57.530 36.000 23.38 15.72 36.81 2.59
80 81 2.544480 TGTCGCTCATGAGTTCTACG 57.456 50.000 23.38 17.18 0.00 3.51
81 82 2.081462 TGTCGCTCATGAGTTCTACGA 58.919 47.619 23.38 19.06 0.00 3.43
82 83 2.683362 TGTCGCTCATGAGTTCTACGAT 59.317 45.455 23.38 0.00 0.00 3.73
83 84 3.242772 TGTCGCTCATGAGTTCTACGATC 60.243 47.826 23.38 15.94 0.00 3.69
84 85 2.032808 TCGCTCATGAGTTCTACGATCG 60.033 50.000 23.38 14.88 0.00 3.69
85 86 2.032808 CGCTCATGAGTTCTACGATCGA 60.033 50.000 24.34 4.52 0.00 3.59
88 89 4.979197 GCTCATGAGTTCTACGATCGATTT 59.021 41.667 24.34 1.27 0.00 2.17
89 90 5.116377 GCTCATGAGTTCTACGATCGATTTC 59.884 44.000 24.34 10.40 0.00 2.17
90 91 5.205565 TCATGAGTTCTACGATCGATTTCG 58.794 41.667 24.34 6.87 44.56 3.46
91 92 3.360533 TGAGTTCTACGATCGATTTCGC 58.639 45.455 24.34 9.94 42.82 4.70
94 95 3.064958 AGTTCTACGATCGATTTCGCTCA 59.935 43.478 24.34 0.00 42.82 4.26
95 96 3.254827 TCTACGATCGATTTCGCTCAG 57.745 47.619 24.34 4.16 42.82 3.35
96 97 2.612672 TCTACGATCGATTTCGCTCAGT 59.387 45.455 24.34 0.00 42.82 3.41
97 98 2.279582 ACGATCGATTTCGCTCAGTT 57.720 45.000 24.34 0.00 42.82 3.16
98 99 1.920574 ACGATCGATTTCGCTCAGTTG 59.079 47.619 24.34 0.00 42.82 3.16
99 100 2.185262 CGATCGATTTCGCTCAGTTGA 58.815 47.619 10.26 0.00 39.60 3.18
100 101 2.598637 CGATCGATTTCGCTCAGTTGAA 59.401 45.455 10.26 0.00 39.60 2.69
103 104 2.157668 TCGATTTCGCTCAGTTGAAAGC 59.842 45.455 0.00 1.11 37.49 3.51
105 106 3.364366 CGATTTCGCTCAGTTGAAAGCTT 60.364 43.478 0.00 0.00 38.10 3.74
106 107 3.609103 TTTCGCTCAGTTGAAAGCTTC 57.391 42.857 0.00 0.00 36.35 3.86
144 145 5.519722 ACGAAAACACAGGAATCAAACATC 58.480 37.500 0.00 0.00 0.00 3.06
330 462 9.118300 AGTCCAGCTCATTTTATCTATGAAAAG 57.882 33.333 0.00 0.00 32.02 2.27
395 527 7.254590 GCATCACCTATGTCTTTTAGCAACTAG 60.255 40.741 0.00 0.00 37.93 2.57
396 528 7.476540 TCACCTATGTCTTTTAGCAACTAGA 57.523 36.000 0.00 0.00 0.00 2.43
398 530 9.197306 TCACCTATGTCTTTTAGCAACTAGATA 57.803 33.333 0.00 0.00 0.00 1.98
400 532 8.978472 ACCTATGTCTTTTAGCAACTAGATACA 58.022 33.333 0.00 0.00 0.00 2.29
401 533 9.988815 CCTATGTCTTTTAGCAACTAGATACAT 57.011 33.333 0.00 0.00 0.00 2.29
404 536 7.847096 TGTCTTTTAGCAACTAGATACATCCA 58.153 34.615 0.00 0.00 0.00 3.41
406 538 9.331282 GTCTTTTAGCAACTAGATACATCCATT 57.669 33.333 0.00 0.00 0.00 3.16
409 541 9.905713 TTTTAGCAACTAGATACATCCATTTCT 57.094 29.630 0.00 0.00 0.00 2.52
411 543 9.982651 TTAGCAACTAGATACATCCATTTCTAC 57.017 33.333 0.00 0.00 0.00 2.59
414 546 7.115095 GCAACTAGATACATCCATTTCTACGAC 59.885 40.741 0.00 0.00 0.00 4.34
415 547 7.818997 ACTAGATACATCCATTTCTACGACA 57.181 36.000 0.00 0.00 0.00 4.35
416 548 8.234136 ACTAGATACATCCATTTCTACGACAA 57.766 34.615 0.00 0.00 0.00 3.18
417 549 8.353684 ACTAGATACATCCATTTCTACGACAAG 58.646 37.037 0.00 0.00 0.00 3.16
418 550 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
419 551 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
420 552 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
423 555 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
424 556 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
425 557 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
426 558 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
429 561 6.880822 TTCTACGACAAGTAATTCCGAATG 57.119 37.500 0.00 0.00 34.45 2.67
431 563 4.196626 ACGACAAGTAATTCCGAATGGA 57.803 40.909 0.00 0.00 44.61 3.41
432 564 5.345702 TACGACAAGTAATTCCGAATGGAG 58.654 41.667 0.00 0.00 37.76 3.86
433 565 5.680408 TACGACAAGTAATTCCGAATGGAGG 60.680 44.000 0.00 0.00 37.76 4.30
441 684 2.840640 TCCGAATGGAGGGAGTAGAA 57.159 50.000 0.00 0.00 40.17 2.10
538 782 2.328099 CCAAGTCGAGCAAGGCACC 61.328 63.158 0.00 0.00 0.00 5.01
547 791 2.750237 CAAGGCACCGGCTTACCC 60.750 66.667 0.00 0.00 46.59 3.69
554 952 3.771160 CCGGCTTACCCTCGTGCT 61.771 66.667 0.00 0.00 0.00 4.40
557 955 0.527817 CGGCTTACCCTCGTGCTAAG 60.528 60.000 0.00 0.00 0.00 2.18
560 958 1.471153 GCTTACCCTCGTGCTAAGACC 60.471 57.143 5.01 0.00 0.00 3.85
568 966 1.078759 CGTGCTAAGACCTGCGGAAG 61.079 60.000 0.00 0.00 0.00 3.46
580 978 4.566987 ACCTGCGGAAGAAGTAGTAAAAG 58.433 43.478 0.00 0.00 33.71 2.27
581 979 4.282703 ACCTGCGGAAGAAGTAGTAAAAGA 59.717 41.667 0.00 0.00 33.71 2.52
583 981 5.204409 TGCGGAAGAAGTAGTAAAAGACA 57.796 39.130 0.00 0.00 0.00 3.41
586 984 5.464389 GCGGAAGAAGTAGTAAAAGACACAA 59.536 40.000 0.00 0.00 0.00 3.33
588 986 7.466320 GCGGAAGAAGTAGTAAAAGACACAAAA 60.466 37.037 0.00 0.00 0.00 2.44
589 987 8.557029 CGGAAGAAGTAGTAAAAGACACAAAAT 58.443 33.333 0.00 0.00 0.00 1.82
590 988 9.880064 GGAAGAAGTAGTAAAAGACACAAAATC 57.120 33.333 0.00 0.00 0.00 2.17
593 991 8.979574 AGAAGTAGTAAAAGACACAAAATCTCG 58.020 33.333 0.00 0.00 0.00 4.04
595 993 5.358298 AGTAAAAGACACAAAATCTCGCC 57.642 39.130 0.00 0.00 0.00 5.54
599 997 0.804989 GACACAAAATCTCGCCCCAG 59.195 55.000 0.00 0.00 0.00 4.45
631 1031 4.500603 TCTCTCCAACGAGAAACTACAC 57.499 45.455 0.00 0.00 44.62 2.90
640 1040 6.422701 CCAACGAGAAACTACACAAAGACATA 59.577 38.462 0.00 0.00 0.00 2.29
669 1070 3.503363 TGTGTGCTCCTCATGATGTTTTC 59.497 43.478 0.00 0.00 0.00 2.29
670 1071 3.503363 GTGTGCTCCTCATGATGTTTTCA 59.497 43.478 0.00 0.00 39.12 2.69
674 1075 5.575606 GTGCTCCTCATGATGTTTTCAAATG 59.424 40.000 0.00 0.00 38.03 2.32
732 1161 1.363744 CGGAGATGACTTGGTTGCTC 58.636 55.000 0.00 0.00 0.00 4.26
739 1168 1.168714 GACTTGGTTGCTCCCATGAC 58.831 55.000 12.78 5.42 33.60 3.06
782 1211 5.720041 TGGGACTAGCTGTAACAAATAGAGT 59.280 40.000 0.00 0.00 0.00 3.24
787 1216 9.934190 GACTAGCTGTAACAAATAGAGTAGTAC 57.066 37.037 0.00 0.00 29.88 2.73
789 1218 7.388460 AGCTGTAACAAATAGAGTAGTACGT 57.612 36.000 0.00 0.00 0.00 3.57
790 1219 7.249147 AGCTGTAACAAATAGAGTAGTACGTG 58.751 38.462 0.00 0.00 0.00 4.49
802 1231 6.409704 AGAGTAGTACGTGGTACAATACTGA 58.590 40.000 0.00 0.00 44.16 3.41
805 1234 5.909621 AGTACGTGGTACAATACTGACAT 57.090 39.130 0.00 0.00 44.16 3.06
903 1332 2.435069 TCCCTCTTATCTCTCGTCGTCT 59.565 50.000 0.00 0.00 0.00 4.18
935 1364 5.045651 TCTCTGGATCACAATAGCCAAGAAA 60.046 40.000 0.00 0.00 0.00 2.52
936 1365 5.188434 TCTGGATCACAATAGCCAAGAAAG 58.812 41.667 0.00 0.00 0.00 2.62
939 1368 4.578105 GGATCACAATAGCCAAGAAAGAGG 59.422 45.833 0.00 0.00 0.00 3.69
942 1371 5.819991 TCACAATAGCCAAGAAAGAGGAAT 58.180 37.500 0.00 0.00 0.00 3.01
943 1372 5.882557 TCACAATAGCCAAGAAAGAGGAATC 59.117 40.000 0.00 0.00 0.00 2.52
944 1373 5.649395 CACAATAGCCAAGAAAGAGGAATCA 59.351 40.000 0.00 0.00 0.00 2.57
945 1374 5.649831 ACAATAGCCAAGAAAGAGGAATCAC 59.350 40.000 0.00 0.00 0.00 3.06
946 1375 3.795688 AGCCAAGAAAGAGGAATCACA 57.204 42.857 0.00 0.00 0.00 3.58
1031 1460 0.803768 CACGTCCAGGAAGCATCTCG 60.804 60.000 1.64 0.00 0.00 4.04
1183 1654 0.107703 GGCAATGGATCTGGACGACA 60.108 55.000 0.00 0.00 0.00 4.35
1224 3993 3.391665 ATGGGAGTACAGCCTGCGC 62.392 63.158 0.00 0.00 0.00 6.09
1631 4406 1.959226 TCGCCGTTCTCAAGTTGGC 60.959 57.895 2.34 0.00 42.29 4.52
1675 4738 1.100510 CACCAATCTCGACTCCGGTA 58.899 55.000 0.00 0.00 36.24 4.02
1699 4762 2.722201 GGGATTGTCGCCTCCGTCT 61.722 63.158 0.00 0.00 35.54 4.18
1904 4985 2.355108 CGATTCTCAAGGACCACCACAT 60.355 50.000 0.00 0.00 38.94 3.21
2013 5100 2.797177 ATCTCCACAAGAAGAAGGCC 57.203 50.000 0.00 0.00 37.61 5.19
2191 5299 9.357652 GCAGTTCAGCATCAAAATTATTTTCTA 57.642 29.630 0.00 0.00 0.00 2.10
2237 5354 7.924412 ACAACATGATGAAAATGAGGATAATGC 59.076 33.333 10.29 0.00 0.00 3.56
2267 5457 6.851222 CAGAGCACTGTTTCTTTCTTTCTA 57.149 37.500 2.59 0.00 39.11 2.10
2295 5485 5.606505 ACTGAACTCTGTTTCTCCTTTCTC 58.393 41.667 0.00 0.00 0.00 2.87
2296 5486 5.365314 ACTGAACTCTGTTTCTCCTTTCTCT 59.635 40.000 0.00 0.00 0.00 3.10
2297 5487 6.126911 ACTGAACTCTGTTTCTCCTTTCTCTT 60.127 38.462 0.00 0.00 0.00 2.85
2298 5488 6.284459 TGAACTCTGTTTCTCCTTTCTCTTC 58.716 40.000 0.00 0.00 0.00 2.87
2299 5489 5.878406 ACTCTGTTTCTCCTTTCTCTTCA 57.122 39.130 0.00 0.00 0.00 3.02
2300 5490 6.240549 ACTCTGTTTCTCCTTTCTCTTCAA 57.759 37.500 0.00 0.00 0.00 2.69
2301 5491 6.052360 ACTCTGTTTCTCCTTTCTCTTCAAC 58.948 40.000 0.00 0.00 0.00 3.18
2302 5492 6.126911 ACTCTGTTTCTCCTTTCTCTTCAACT 60.127 38.462 0.00 0.00 0.00 3.16
2303 5493 6.284459 TCTGTTTCTCCTTTCTCTTCAACTC 58.716 40.000 0.00 0.00 0.00 3.01
2304 5494 6.098982 TCTGTTTCTCCTTTCTCTTCAACTCT 59.901 38.462 0.00 0.00 0.00 3.24
2305 5495 6.051717 TGTTTCTCCTTTCTCTTCAACTCTG 58.948 40.000 0.00 0.00 0.00 3.35
2306 5496 4.264460 TCTCCTTTCTCTTCAACTCTGC 57.736 45.455 0.00 0.00 0.00 4.26
2307 5497 3.900601 TCTCCTTTCTCTTCAACTCTGCT 59.099 43.478 0.00 0.00 0.00 4.24
2308 5498 4.346418 TCTCCTTTCTCTTCAACTCTGCTT 59.654 41.667 0.00 0.00 0.00 3.91
2309 5499 4.636249 TCCTTTCTCTTCAACTCTGCTTC 58.364 43.478 0.00 0.00 0.00 3.86
2310 5500 3.750652 CCTTTCTCTTCAACTCTGCTTCC 59.249 47.826 0.00 0.00 0.00 3.46
2311 5501 4.504689 CCTTTCTCTTCAACTCTGCTTCCT 60.505 45.833 0.00 0.00 0.00 3.36
2312 5502 3.951775 TCTCTTCAACTCTGCTTCCTC 57.048 47.619 0.00 0.00 0.00 3.71
2313 5503 3.234353 TCTCTTCAACTCTGCTTCCTCA 58.766 45.455 0.00 0.00 0.00 3.86
2314 5504 3.257873 TCTCTTCAACTCTGCTTCCTCAG 59.742 47.826 0.00 0.00 35.46 3.35
2349 5543 5.468072 TGAACTCTGTTTCTTCATTCTCTGC 59.532 40.000 0.00 0.00 0.00 4.26
2412 5716 2.659610 GCTCTGGACAAGGCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
2463 5767 2.897350 GCCATCACCTACGCAGCC 60.897 66.667 0.00 0.00 0.00 4.85
2540 5844 1.137086 CGACCCGATTCTCCTCACAAT 59.863 52.381 0.00 0.00 0.00 2.71
2561 5865 2.675658 AACATTGCAAGGTACAGGGT 57.324 45.000 18.21 0.00 0.00 4.34
2898 6214 1.672030 CTTGGCAGCGACCATCACA 60.672 57.895 1.30 0.00 40.13 3.58
3030 6349 2.289694 TGCCTTCTTCTACTGCAACTCC 60.290 50.000 0.00 0.00 0.00 3.85
3436 7163 3.869272 GCGGAACATGGCAGAGCG 61.869 66.667 0.00 0.00 0.00 5.03
3630 7357 1.625315 CTGAGGGTGATGAACTGGACA 59.375 52.381 0.00 0.00 0.00 4.02
3725 7452 1.153842 TCGTCGCGCTCATCATTGT 60.154 52.632 5.56 0.00 0.00 2.71
3735 7462 0.612744 TCATCATTGTCGTGCTGGGA 59.387 50.000 0.00 0.00 0.00 4.37
3949 9733 7.172532 CGTCTCTAGATCTGTAATCAGCTTAGT 59.827 40.741 5.18 0.00 41.10 2.24
3959 9743 5.932303 TGTAATCAGCTTAGTTCTGTCCAAC 59.068 40.000 0.00 0.00 33.48 3.77
3960 9744 3.402628 TCAGCTTAGTTCTGTCCAACC 57.597 47.619 0.00 0.00 33.48 3.77
3961 9745 2.703536 TCAGCTTAGTTCTGTCCAACCA 59.296 45.455 0.00 0.00 33.48 3.67
3962 9746 3.135712 TCAGCTTAGTTCTGTCCAACCAA 59.864 43.478 0.00 0.00 33.48 3.67
3976 9771 3.582647 TCCAACCAATGTCTCTGCTCTAA 59.417 43.478 0.00 0.00 0.00 2.10
4073 9923 0.037326 ATTGTTTCTCGGCTCGCTGA 60.037 50.000 0.00 0.00 0.00 4.26
4093 9957 1.296056 GCCAGCGTGTTTGTATCGGT 61.296 55.000 0.00 0.00 35.75 4.69
4096 9960 1.136363 CAGCGTGTTTGTATCGGTGTG 60.136 52.381 7.62 0.00 44.32 3.82
4131 9996 1.001633 GGTAGGTGACGCTTTCCTGAA 59.998 52.381 0.00 0.00 33.34 3.02
4160 10048 5.010617 TGTGCACTGTGTCTCATAAGAACTA 59.989 40.000 19.41 0.00 31.93 2.24
4170 10058 6.209986 TGTCTCATAAGAACTAGAACGGGAAA 59.790 38.462 0.00 0.00 31.93 3.13
4201 10160 4.572985 TGACAGAAACTGAAGCATTTGG 57.427 40.909 5.76 0.00 35.18 3.28
4202 10161 3.243501 TGACAGAAACTGAAGCATTTGGC 60.244 43.478 5.76 0.00 37.77 4.52
4215 10182 4.003519 GCATTTGGCGTTACTACTGAAG 57.996 45.455 0.00 0.00 0.00 3.02
4220 10187 4.041740 TGGCGTTACTACTGAAGCATAG 57.958 45.455 0.00 0.00 0.00 2.23
4227 10309 6.622549 GTTACTACTGAAGCATAGTGTGTCT 58.377 40.000 0.00 0.00 33.65 3.41
4310 10462 0.606401 ACACCTTGAATCCAGCACCG 60.606 55.000 0.00 0.00 0.00 4.94
4400 10553 2.979676 CGCAACTGAGCTGGGCAA 60.980 61.111 0.00 0.00 0.00 4.52
4445 10598 0.109132 CGCCATTTTGGTTGGAGAGC 60.109 55.000 0.00 0.00 40.46 4.09
4452 10605 2.978156 TTGGTTGGAGAGCATTCCTT 57.022 45.000 7.86 0.00 38.12 3.36
4455 10608 2.087646 GGTTGGAGAGCATTCCTTGAC 58.912 52.381 7.86 4.60 38.12 3.18
4571 10742 1.071814 CGAGGGACACCGGGAAAAA 59.928 57.895 6.32 0.00 43.47 1.94
4617 10801 3.458163 CCAGGCGCGGAAGGTCTA 61.458 66.667 8.83 0.00 0.00 2.59
4673 10857 3.011517 TCCTGCTTCTGGCTCCCC 61.012 66.667 0.00 0.00 42.39 4.81
4674 10858 4.120755 CCTGCTTCTGGCTCCCCC 62.121 72.222 0.00 0.00 42.39 5.40
4675 10859 4.479993 CTGCTTCTGGCTCCCCCG 62.480 72.222 0.00 0.00 42.39 5.73
4677 10861 4.475135 GCTTCTGGCTCCCCCGTC 62.475 72.222 0.00 0.00 38.06 4.79
4678 10862 4.148825 CTTCTGGCTCCCCCGTCG 62.149 72.222 0.00 0.00 35.87 5.12
4679 10863 4.689549 TTCTGGCTCCCCCGTCGA 62.690 66.667 0.00 0.00 35.87 4.20
4683 10867 4.452733 GGCTCCCCCGTCGACAAG 62.453 72.222 17.16 5.96 0.00 3.16
4685 10869 3.382832 CTCCCCCGTCGACAAGCT 61.383 66.667 17.16 0.00 0.00 3.74
4686 10870 3.649277 CTCCCCCGTCGACAAGCTG 62.649 68.421 17.16 0.00 0.00 4.24
4687 10871 4.760047 CCCCCGTCGACAAGCTGG 62.760 72.222 17.16 7.92 0.00 4.85
4688 10872 3.691342 CCCCGTCGACAAGCTGGA 61.691 66.667 17.16 0.00 0.00 3.86
4689 10873 2.432628 CCCGTCGACAAGCTGGAC 60.433 66.667 17.16 0.00 0.00 4.02
4692 10876 2.432628 GTCGACAAGCTGGACGGG 60.433 66.667 11.55 0.00 0.00 5.28
4693 10877 2.915659 TCGACAAGCTGGACGGGT 60.916 61.111 12.97 0.00 0.00 5.28
4694 10878 1.604308 TCGACAAGCTGGACGGGTA 60.604 57.895 12.97 0.00 0.00 3.69
4695 10879 1.153823 CGACAAGCTGGACGGGTAG 60.154 63.158 4.96 0.00 0.00 3.18
4696 10880 1.874345 CGACAAGCTGGACGGGTAGT 61.874 60.000 4.96 0.00 0.00 2.73
4697 10881 0.320697 GACAAGCTGGACGGGTAGTT 59.679 55.000 0.00 0.00 0.00 2.24
4698 10882 0.320697 ACAAGCTGGACGGGTAGTTC 59.679 55.000 0.00 0.00 0.00 3.01
4699 10883 0.320374 CAAGCTGGACGGGTAGTTCA 59.680 55.000 0.00 0.00 35.58 3.18
4700 10884 1.066143 CAAGCTGGACGGGTAGTTCAT 60.066 52.381 0.00 0.00 37.79 2.57
4701 10885 0.824759 AGCTGGACGGGTAGTTCATC 59.175 55.000 0.00 0.00 37.79 2.92
4702 10886 0.824759 GCTGGACGGGTAGTTCATCT 59.175 55.000 0.00 0.00 37.79 2.90
4703 10887 1.207329 GCTGGACGGGTAGTTCATCTT 59.793 52.381 0.00 0.00 37.79 2.40
4704 10888 2.354805 GCTGGACGGGTAGTTCATCTTT 60.355 50.000 0.00 0.00 37.79 2.52
4705 10889 3.118884 GCTGGACGGGTAGTTCATCTTTA 60.119 47.826 0.00 0.00 37.79 1.85
4706 10890 4.622220 GCTGGACGGGTAGTTCATCTTTAA 60.622 45.833 0.00 0.00 37.79 1.52
4707 10891 4.824289 TGGACGGGTAGTTCATCTTTAAC 58.176 43.478 0.00 0.00 32.22 2.01
4708 10892 4.283978 TGGACGGGTAGTTCATCTTTAACA 59.716 41.667 0.00 0.00 32.22 2.41
4709 10893 5.221682 TGGACGGGTAGTTCATCTTTAACAA 60.222 40.000 0.00 0.00 32.22 2.83
4710 10894 5.350640 GGACGGGTAGTTCATCTTTAACAAG 59.649 44.000 0.00 0.00 0.00 3.16
4711 10895 4.694037 ACGGGTAGTTCATCTTTAACAAGC 59.306 41.667 0.00 0.00 0.00 4.01
4712 10896 4.935808 CGGGTAGTTCATCTTTAACAAGCT 59.064 41.667 0.00 0.00 0.00 3.74
4713 10897 5.163854 CGGGTAGTTCATCTTTAACAAGCTG 60.164 44.000 0.00 0.00 0.00 4.24
4714 10898 5.123979 GGGTAGTTCATCTTTAACAAGCTGG 59.876 44.000 0.00 0.00 28.66 4.85
4715 10899 5.938125 GGTAGTTCATCTTTAACAAGCTGGA 59.062 40.000 0.00 0.00 28.66 3.86
4716 10900 5.948992 AGTTCATCTTTAACAAGCTGGAC 57.051 39.130 0.00 0.00 35.57 4.02
4717 10901 4.452455 AGTTCATCTTTAACAAGCTGGACG 59.548 41.667 0.00 0.00 38.99 4.79
4718 10902 3.334691 TCATCTTTAACAAGCTGGACGG 58.665 45.455 0.00 0.00 28.66 4.79
4719 10903 2.178912 TCTTTAACAAGCTGGACGGG 57.821 50.000 0.00 0.00 0.00 5.28
4720 10904 1.695242 TCTTTAACAAGCTGGACGGGA 59.305 47.619 0.00 0.00 0.00 5.14
4721 10905 2.076863 CTTTAACAAGCTGGACGGGAG 58.923 52.381 0.00 0.00 0.00 4.30
4737 10921 4.690122 ACGGGAGTAATTAATCTCAACGG 58.310 43.478 12.91 3.93 44.60 4.44
4738 10922 4.056050 CGGGAGTAATTAATCTCAACGGG 58.944 47.826 12.91 0.00 32.92 5.28
4739 10923 4.202182 CGGGAGTAATTAATCTCAACGGGA 60.202 45.833 12.91 0.00 32.92 5.14
4740 10924 5.298347 GGGAGTAATTAATCTCAACGGGAG 58.702 45.833 12.29 0.30 45.49 4.30
4741 10925 4.750598 GGAGTAATTAATCTCAACGGGAGC 59.249 45.833 12.29 0.00 43.70 4.70
4742 10926 5.353394 AGTAATTAATCTCAACGGGAGCA 57.647 39.130 1.81 0.00 43.70 4.26
4743 10927 5.741011 AGTAATTAATCTCAACGGGAGCAA 58.259 37.500 1.81 0.00 43.70 3.91
4744 10928 4.965119 AATTAATCTCAACGGGAGCAAC 57.035 40.909 1.81 0.00 43.70 4.17
4745 10929 3.410631 TTAATCTCAACGGGAGCAACA 57.589 42.857 1.81 0.00 43.70 3.33
4746 10930 2.270352 AATCTCAACGGGAGCAACAA 57.730 45.000 1.81 0.00 43.70 2.83
4747 10931 2.270352 ATCTCAACGGGAGCAACAAA 57.730 45.000 1.81 0.00 43.70 2.83
4748 10932 1.305201 TCTCAACGGGAGCAACAAAC 58.695 50.000 1.81 0.00 43.70 2.93
4749 10933 0.310854 CTCAACGGGAGCAACAAACC 59.689 55.000 0.00 0.00 36.69 3.27
4750 10934 0.106918 TCAACGGGAGCAACAAACCT 60.107 50.000 0.00 0.00 0.00 3.50
4751 10935 0.744281 CAACGGGAGCAACAAACCTT 59.256 50.000 0.00 0.00 0.00 3.50
4752 10936 1.136110 CAACGGGAGCAACAAACCTTT 59.864 47.619 0.00 0.00 0.00 3.11
4753 10937 1.480789 ACGGGAGCAACAAACCTTTT 58.519 45.000 0.00 0.00 0.00 2.27
4754 10938 2.657143 ACGGGAGCAACAAACCTTTTA 58.343 42.857 0.00 0.00 0.00 1.52
4755 10939 3.227614 ACGGGAGCAACAAACCTTTTAT 58.772 40.909 0.00 0.00 0.00 1.40
4756 10940 3.639561 ACGGGAGCAACAAACCTTTTATT 59.360 39.130 0.00 0.00 0.00 1.40
4757 10941 4.100344 ACGGGAGCAACAAACCTTTTATTT 59.900 37.500 0.00 0.00 0.00 1.40
4758 10942 5.053811 CGGGAGCAACAAACCTTTTATTTT 58.946 37.500 0.00 0.00 0.00 1.82
4759 10943 6.183360 ACGGGAGCAACAAACCTTTTATTTTA 60.183 34.615 0.00 0.00 0.00 1.52
4760 10944 6.871492 CGGGAGCAACAAACCTTTTATTTTAT 59.129 34.615 0.00 0.00 0.00 1.40
4761 10945 7.386573 CGGGAGCAACAAACCTTTTATTTTATT 59.613 33.333 0.00 0.00 0.00 1.40
4762 10946 9.713713 GGGAGCAACAAACCTTTTATTTTATTA 57.286 29.630 0.00 0.00 0.00 0.98
4787 10971 6.677781 AACGGAATAATGTTCACACATAGG 57.322 37.500 0.00 0.00 43.34 2.57
4788 10972 5.984725 ACGGAATAATGTTCACACATAGGA 58.015 37.500 0.00 0.00 43.34 2.94
4789 10973 6.049149 ACGGAATAATGTTCACACATAGGAG 58.951 40.000 0.00 0.00 43.34 3.69
4790 10974 6.049149 CGGAATAATGTTCACACATAGGAGT 58.951 40.000 0.00 0.00 43.34 3.85
4791 10975 7.147794 ACGGAATAATGTTCACACATAGGAGTA 60.148 37.037 0.00 0.00 43.34 2.59
4792 10976 7.382488 CGGAATAATGTTCACACATAGGAGTAG 59.618 40.741 0.00 0.00 43.34 2.57
4793 10977 8.204836 GGAATAATGTTCACACATAGGAGTAGT 58.795 37.037 0.00 0.00 43.34 2.73
4796 10980 7.956328 AATGTTCACACATAGGAGTAGTAGA 57.044 36.000 0.00 0.00 43.34 2.59
4797 10981 6.754702 TGTTCACACATAGGAGTAGTAGAC 57.245 41.667 0.00 0.00 0.00 2.59
4798 10982 6.482524 TGTTCACACATAGGAGTAGTAGACT 58.517 40.000 0.00 0.00 42.90 3.24
4799 10983 7.627311 TGTTCACACATAGGAGTAGTAGACTA 58.373 38.462 0.00 0.00 39.06 2.59
4800 10984 8.272889 TGTTCACACATAGGAGTAGTAGACTAT 58.727 37.037 0.00 0.00 39.06 2.12
4801 10985 9.122779 GTTCACACATAGGAGTAGTAGACTATT 57.877 37.037 0.00 0.00 39.06 1.73
4802 10986 9.696572 TTCACACATAGGAGTAGTAGACTATTT 57.303 33.333 0.00 0.00 39.06 1.40
4803 10987 9.696572 TCACACATAGGAGTAGTAGACTATTTT 57.303 33.333 0.00 0.00 39.06 1.82
4817 11001 9.520515 AGTAGACTATTTTTGTGAATTGGATGT 57.479 29.630 0.00 0.00 0.00 3.06
4820 11004 9.295825 AGACTATTTTTGTGAATTGGATGTACA 57.704 29.630 0.00 0.00 0.00 2.90
4821 11005 9.341899 GACTATTTTTGTGAATTGGATGTACAC 57.658 33.333 0.00 0.00 0.00 2.90
4822 11006 9.077885 ACTATTTTTGTGAATTGGATGTACACT 57.922 29.630 0.00 0.00 33.41 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.632145 ACCATAGTGGATTCGGCATTTTC 59.368 43.478 2.45 0.00 40.96 2.29
4 5 3.631250 ACCATAGTGGATTCGGCATTTT 58.369 40.909 2.45 0.00 40.96 1.82
6 7 2.172505 TGACCATAGTGGATTCGGCATT 59.827 45.455 2.45 0.00 40.96 3.56
7 8 1.768275 TGACCATAGTGGATTCGGCAT 59.232 47.619 2.45 0.00 40.96 4.40
9 10 2.325583 TTGACCATAGTGGATTCGGC 57.674 50.000 2.45 0.00 40.96 5.54
10 11 3.071602 AGGATTGACCATAGTGGATTCGG 59.928 47.826 2.45 0.00 40.96 4.30
11 12 4.202253 TGAGGATTGACCATAGTGGATTCG 60.202 45.833 2.45 0.00 40.96 3.34
12 13 5.296151 TGAGGATTGACCATAGTGGATTC 57.704 43.478 2.45 0.00 40.96 2.52
13 14 5.715439 TTGAGGATTGACCATAGTGGATT 57.285 39.130 2.45 0.00 40.96 3.01
14 15 5.919348 ATTGAGGATTGACCATAGTGGAT 57.081 39.130 2.45 0.00 40.96 3.41
15 16 5.684704 GAATTGAGGATTGACCATAGTGGA 58.315 41.667 2.45 0.00 40.96 4.02
17 18 4.512944 CCGAATTGAGGATTGACCATAGTG 59.487 45.833 0.00 0.00 42.04 2.74
18 19 4.708177 CCGAATTGAGGATTGACCATAGT 58.292 43.478 0.00 0.00 42.04 2.12
21 22 2.301346 GCCGAATTGAGGATTGACCAT 58.699 47.619 0.97 0.00 42.04 3.55
23 24 0.657840 CGCCGAATTGAGGATTGACC 59.342 55.000 0.97 0.00 39.35 4.02
26 27 1.594862 GAGTCGCCGAATTGAGGATTG 59.405 52.381 0.00 0.00 0.00 2.67
27 28 1.802880 CGAGTCGCCGAATTGAGGATT 60.803 52.381 0.00 0.00 0.00 3.01
28 29 0.249073 CGAGTCGCCGAATTGAGGAT 60.249 55.000 0.00 0.00 0.00 3.24
29 30 1.138883 CGAGTCGCCGAATTGAGGA 59.861 57.895 0.00 0.00 0.00 3.71
30 31 1.153823 ACGAGTCGCCGAATTGAGG 60.154 57.895 13.59 0.00 0.00 3.86
31 32 0.732880 ACACGAGTCGCCGAATTGAG 60.733 55.000 13.59 3.07 0.00 3.02
32 33 0.731514 GACACGAGTCGCCGAATTGA 60.732 55.000 13.59 0.00 34.60 2.57
33 34 1.702299 GACACGAGTCGCCGAATTG 59.298 57.895 13.59 4.65 34.60 2.32
34 35 4.164252 GACACGAGTCGCCGAATT 57.836 55.556 13.59 0.00 34.60 2.17
53 54 7.383102 AGAACTCATGAGCGACATTATTTTT 57.617 32.000 22.83 4.61 37.07 1.94
56 57 5.687730 CGTAGAACTCATGAGCGACATTATT 59.312 40.000 22.83 6.64 37.07 1.40
57 58 5.008712 TCGTAGAACTCATGAGCGACATTAT 59.991 40.000 22.83 8.80 37.07 1.28
59 60 3.128764 TCGTAGAACTCATGAGCGACATT 59.871 43.478 22.83 8.91 37.07 2.71
60 61 2.683362 TCGTAGAACTCATGAGCGACAT 59.317 45.455 22.83 7.14 40.17 3.06
61 62 2.081462 TCGTAGAACTCATGAGCGACA 58.919 47.619 22.83 3.14 0.00 4.35
62 63 2.826979 TCGTAGAACTCATGAGCGAC 57.173 50.000 22.83 13.47 0.00 5.19
63 64 2.032808 CGATCGTAGAACTCATGAGCGA 60.033 50.000 22.83 21.12 43.58 4.93
65 66 3.610786 TCGATCGTAGAACTCATGAGC 57.389 47.619 22.83 7.43 43.58 4.26
68 69 4.143721 GCGAAATCGATCGTAGAACTCATG 60.144 45.833 15.94 0.00 44.49 3.07
69 70 3.975670 GCGAAATCGATCGTAGAACTCAT 59.024 43.478 15.94 0.00 44.49 2.90
70 71 3.064958 AGCGAAATCGATCGTAGAACTCA 59.935 43.478 15.94 0.00 44.49 3.41
71 72 3.619729 AGCGAAATCGATCGTAGAACTC 58.380 45.455 15.94 4.01 44.49 3.01
81 82 3.181516 GCTTTCAACTGAGCGAAATCGAT 60.182 43.478 7.06 0.00 43.02 3.59
82 83 2.157668 GCTTTCAACTGAGCGAAATCGA 59.842 45.455 7.06 0.00 43.02 3.59
83 84 2.158449 AGCTTTCAACTGAGCGAAATCG 59.842 45.455 0.00 0.00 43.53 3.34
84 85 3.820777 AGCTTTCAACTGAGCGAAATC 57.179 42.857 0.00 0.00 43.53 2.17
85 86 3.565482 TGAAGCTTTCAACTGAGCGAAAT 59.435 39.130 0.00 0.00 43.53 2.17
88 89 1.867233 GTGAAGCTTTCAACTGAGCGA 59.133 47.619 0.00 0.00 43.53 4.93
89 90 1.069636 GGTGAAGCTTTCAACTGAGCG 60.070 52.381 0.00 0.00 43.99 5.03
90 91 2.695613 GGTGAAGCTTTCAACTGAGC 57.304 50.000 0.00 0.00 43.99 4.26
103 104 5.856126 TTCGTTACATTTAGCTGGTGAAG 57.144 39.130 0.00 0.00 0.00 3.02
105 106 5.527951 TGTTTTCGTTACATTTAGCTGGTGA 59.472 36.000 0.00 0.00 0.00 4.02
106 107 5.623673 GTGTTTTCGTTACATTTAGCTGGTG 59.376 40.000 0.00 0.00 0.00 4.17
144 145 8.450964 ACAAAATAGTGGATTAACATGTTCTCG 58.549 33.333 15.85 0.85 0.00 4.04
261 391 3.363970 CGTCGCATTCTAAGTTGCACTTT 60.364 43.478 6.82 0.00 39.51 2.66
330 462 4.604043 CGCATGTCGTATCTTTCATCGTTC 60.604 45.833 0.00 0.00 0.00 3.95
345 477 1.631072 GATGAACGGACGCATGTCG 59.369 57.895 7.79 7.79 46.49 4.35
395 527 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
396 528 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
398 530 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
400 532 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
401 533 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
402 534 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
404 536 7.011109 CCATTCGGAATTACTTGTCGTAGAAAT 59.989 37.037 0.00 0.00 39.69 2.17
406 538 5.808540 CCATTCGGAATTACTTGTCGTAGAA 59.191 40.000 0.00 0.00 39.69 2.10
409 541 5.327616 TCCATTCGGAATTACTTGTCGTA 57.672 39.130 0.00 0.00 38.83 3.43
411 543 3.555956 CCTCCATTCGGAATTACTTGTCG 59.444 47.826 0.00 0.00 42.21 4.35
414 546 4.130118 CTCCCTCCATTCGGAATTACTTG 58.870 47.826 0.00 0.00 42.21 3.16
415 547 3.780850 ACTCCCTCCATTCGGAATTACTT 59.219 43.478 0.00 0.00 42.21 2.24
416 548 3.385115 ACTCCCTCCATTCGGAATTACT 58.615 45.455 0.00 0.00 42.21 2.24
417 549 3.840124 ACTCCCTCCATTCGGAATTAC 57.160 47.619 0.00 0.00 42.21 1.89
418 550 4.811498 TCTACTCCCTCCATTCGGAATTA 58.189 43.478 0.00 0.00 42.21 1.40
419 551 3.654273 TCTACTCCCTCCATTCGGAATT 58.346 45.455 0.00 0.00 42.21 2.17
420 552 3.330126 TCTACTCCCTCCATTCGGAAT 57.670 47.619 0.00 0.00 42.21 3.01
423 555 4.423625 AAATTCTACTCCCTCCATTCGG 57.576 45.455 0.00 0.00 0.00 4.30
519 763 2.032528 TGCCTTGCTCGACTTGGG 59.967 61.111 0.00 0.00 0.00 4.12
538 782 0.527817 CTTAGCACGAGGGTAAGCCG 60.528 60.000 14.36 0.00 46.88 5.52
547 791 4.079090 CGCAGGTCTTAGCACGAG 57.921 61.111 0.00 0.00 0.00 4.18
560 958 5.118817 GTGTCTTTTACTACTTCTTCCGCAG 59.881 44.000 0.00 0.00 0.00 5.18
568 966 7.740781 GCGAGATTTTGTGTCTTTTACTACTTC 59.259 37.037 0.00 0.00 0.00 3.01
580 978 0.804989 CTGGGGCGAGATTTTGTGTC 59.195 55.000 0.00 0.00 0.00 3.67
581 979 1.244019 GCTGGGGCGAGATTTTGTGT 61.244 55.000 0.00 0.00 0.00 3.72
583 981 1.678970 GGCTGGGGCGAGATTTTGT 60.679 57.895 0.00 0.00 39.81 2.83
631 1031 6.144402 GGAGCACACATTTTTGTATGTCTTTG 59.856 38.462 0.00 0.00 36.64 2.77
640 1040 3.890756 TCATGAGGAGCACACATTTTTGT 59.109 39.130 0.00 0.00 0.00 2.83
669 1070 8.506140 TTCTCGCTTTTAAGATGAAACATTTG 57.494 30.769 0.00 0.00 0.00 2.32
670 1071 9.696917 ATTTCTCGCTTTTAAGATGAAACATTT 57.303 25.926 0.00 0.00 0.00 2.32
674 1075 6.803807 AGCATTTCTCGCTTTTAAGATGAAAC 59.196 34.615 0.00 0.00 35.82 2.78
702 1131 5.163754 CCAAGTCATCTCCGGTCAAATAAAC 60.164 44.000 0.00 0.00 0.00 2.01
739 1168 0.321298 ACATGGGAAAACGGACGGAG 60.321 55.000 0.00 0.00 0.00 4.63
782 1211 7.094248 ACAATGTCAGTATTGTACCACGTACTA 60.094 37.037 2.56 0.00 46.40 1.82
802 1231 6.127814 CCTGCATATTCAAAGTCTGACAATGT 60.128 38.462 10.88 0.00 32.49 2.71
805 1234 5.412594 GTCCTGCATATTCAAAGTCTGACAA 59.587 40.000 10.88 0.00 32.21 3.18
935 1364 1.271054 GCAGGTGTGTGTGATTCCTCT 60.271 52.381 0.00 0.00 0.00 3.69
936 1365 1.160137 GCAGGTGTGTGTGATTCCTC 58.840 55.000 0.00 0.00 0.00 3.71
939 1368 1.802960 CTCAGCAGGTGTGTGTGATTC 59.197 52.381 0.00 0.00 0.00 2.52
942 1371 0.104855 GTCTCAGCAGGTGTGTGTGA 59.895 55.000 0.00 0.00 0.00 3.58
943 1372 0.105593 AGTCTCAGCAGGTGTGTGTG 59.894 55.000 0.00 0.00 0.00 3.82
944 1373 0.833287 AAGTCTCAGCAGGTGTGTGT 59.167 50.000 0.00 0.00 0.00 3.72
945 1374 1.202568 TCAAGTCTCAGCAGGTGTGTG 60.203 52.381 0.00 0.00 0.00 3.82
946 1375 1.069823 CTCAAGTCTCAGCAGGTGTGT 59.930 52.381 0.00 0.00 0.00 3.72
1224 3993 0.392193 CCAGCAGCAGGAGGTACTTG 60.392 60.000 0.00 0.00 41.55 3.16
1297 4066 4.479993 GTGCGCCTCCTGCCAGAT 62.480 66.667 4.18 0.00 36.24 2.90
1558 4333 3.521727 AGTAGATGGTGGAGACCTTGTT 58.478 45.455 0.00 0.00 43.58 2.83
1631 4406 0.742281 CATCTTCCAGCACCTGTCCG 60.742 60.000 0.00 0.00 0.00 4.79
1699 4762 1.078356 CCTCGAGGTCAGAGTCGGA 60.078 63.158 24.04 0.00 36.81 4.55
1904 4985 0.108992 GAACACCGTCAGGCGTATGA 60.109 55.000 3.09 0.00 42.76 2.15
2013 5100 1.299468 GTAGAGCATGCGAGACCGG 60.299 63.158 13.01 0.00 36.06 5.28
2077 5164 4.031129 CTCCCTGCAGCTGCCTGT 62.031 66.667 34.64 0.00 41.26 4.00
2191 5299 0.550914 TGGGCTGGACTGAAACAACT 59.449 50.000 0.00 0.00 0.00 3.16
2295 5485 3.006752 AGACTGAGGAAGCAGAGTTGAAG 59.993 47.826 0.00 0.00 39.20 3.02
2296 5486 2.968574 AGACTGAGGAAGCAGAGTTGAA 59.031 45.455 0.00 0.00 39.20 2.69
2297 5487 2.560542 GAGACTGAGGAAGCAGAGTTGA 59.439 50.000 0.00 0.00 39.20 3.18
2298 5488 2.562298 AGAGACTGAGGAAGCAGAGTTG 59.438 50.000 0.00 0.00 39.20 3.16
2299 5489 2.562298 CAGAGACTGAGGAAGCAGAGTT 59.438 50.000 0.00 0.00 39.20 3.01
2300 5490 2.170166 CAGAGACTGAGGAAGCAGAGT 58.830 52.381 0.00 0.00 39.20 3.24
2301 5491 2.445427 TCAGAGACTGAGGAAGCAGAG 58.555 52.381 0.00 0.00 35.39 3.35
2302 5492 2.593925 TCAGAGACTGAGGAAGCAGA 57.406 50.000 0.00 0.00 35.39 4.26
2303 5493 3.006752 AGTTTCAGAGACTGAGGAAGCAG 59.993 47.826 0.00 0.00 41.75 4.24
2304 5494 2.968574 AGTTTCAGAGACTGAGGAAGCA 59.031 45.455 0.00 0.00 41.75 3.91
2305 5495 3.006323 TCAGTTTCAGAGACTGAGGAAGC 59.994 47.826 17.85 0.00 46.21 3.86
2306 5496 4.862902 TCAGTTTCAGAGACTGAGGAAG 57.137 45.455 17.85 0.00 46.21 3.46
2312 5502 4.942852 ACAGAGTTCAGTTTCAGAGACTG 58.057 43.478 13.88 13.88 44.54 3.51
2313 5503 5.606348 AACAGAGTTCAGTTTCAGAGACT 57.394 39.130 0.00 0.00 0.00 3.24
2314 5504 6.280537 GAAACAGAGTTCAGTTTCAGAGAC 57.719 41.667 19.13 0.00 45.64 3.36
2349 5543 7.279758 AGAGAAAGAAGAAACAGAGTTCAGTTG 59.720 37.037 0.00 0.00 0.00 3.16
2412 5716 2.289694 GGCCAGCAGTAGAACAAGAGAA 60.290 50.000 0.00 0.00 0.00 2.87
2540 5844 4.076394 GACCCTGTACCTTGCAATGTTTA 58.924 43.478 12.74 2.23 0.00 2.01
2561 5865 3.418995 ACCGAGTTGCAGTAGTAGAAGA 58.581 45.455 0.00 0.00 0.00 2.87
2803 6107 4.276926 AGCATTGTCTTTCTTGTCCTTGTC 59.723 41.667 0.00 0.00 0.00 3.18
2898 6214 2.590092 GTGAGGCCGGCTTGGTAT 59.410 61.111 28.56 5.41 41.21 2.73
3030 6349 4.787563 GCGATGGACAACATGAAGCTTATG 60.788 45.833 0.00 6.65 40.72 1.90
3436 7163 4.849329 CTCGTACCCGCTGTCGCC 62.849 72.222 0.00 0.00 0.00 5.54
3630 7357 6.545298 GGAGAGCAAATAAATCCAGTCTGATT 59.455 38.462 0.00 0.00 36.53 2.57
3725 7452 3.965379 TTACAAAGTATCCCAGCACGA 57.035 42.857 0.00 0.00 0.00 4.35
3949 9733 3.743521 CAGAGACATTGGTTGGACAGAA 58.256 45.455 0.00 0.00 0.00 3.02
3959 9743 5.843673 TCTAGTTAGAGCAGAGACATTGG 57.156 43.478 0.00 0.00 0.00 3.16
3960 9744 7.229306 AGAGATCTAGTTAGAGCAGAGACATTG 59.771 40.741 7.13 0.00 40.98 2.82
3961 9745 7.290061 AGAGATCTAGTTAGAGCAGAGACATT 58.710 38.462 7.13 0.00 40.98 2.71
3962 9746 6.841601 AGAGATCTAGTTAGAGCAGAGACAT 58.158 40.000 7.13 0.00 40.98 3.06
3976 9771 9.487442 AGGAATCTAAAAACAGAGAGATCTAGT 57.513 33.333 0.00 0.00 0.00 2.57
4073 9923 1.019278 CCGATACAAACACGCTGGCT 61.019 55.000 0.00 0.00 0.00 4.75
4079 9929 2.128821 TCACACACCGATACAAACACG 58.871 47.619 0.00 0.00 0.00 4.49
4080 9930 3.743911 TCATCACACACCGATACAAACAC 59.256 43.478 0.00 0.00 0.00 3.32
4084 9934 3.953712 ACTCATCACACACCGATACAA 57.046 42.857 0.00 0.00 0.00 2.41
4093 9957 1.275010 ACCACGCATACTCATCACACA 59.725 47.619 0.00 0.00 0.00 3.72
4096 9960 2.100916 ACCTACCACGCATACTCATCAC 59.899 50.000 0.00 0.00 0.00 3.06
4131 9996 0.179073 GAGACACAGTGCACACAGGT 60.179 55.000 21.04 11.30 0.00 4.00
4160 10048 2.270352 TTCATGCACTTTCCCGTTCT 57.730 45.000 0.00 0.00 0.00 3.01
4170 10058 4.392047 TCAGTTTCTGTCATTCATGCACT 58.608 39.130 0.00 0.00 32.61 4.40
4201 10160 4.265556 CACACTATGCTTCAGTAGTAACGC 59.734 45.833 0.00 0.00 30.37 4.84
4202 10161 5.399858 ACACACTATGCTTCAGTAGTAACG 58.600 41.667 0.00 0.00 30.37 3.18
4215 10182 5.721232 ACTGTACCTAAAGACACACTATGC 58.279 41.667 0.00 0.00 0.00 3.14
4220 10187 5.449107 TCAGACTGTACCTAAAGACACAC 57.551 43.478 1.59 0.00 0.00 3.82
4227 10309 6.872020 GCACAATAGTTCAGACTGTACCTAAA 59.128 38.462 8.46 0.00 36.60 1.85
4292 10444 1.308069 CCGGTGCTGGATTCAAGGTG 61.308 60.000 0.00 0.00 0.00 4.00
4374 10527 4.467084 TCAGTTGCGGGGATCGGC 62.467 66.667 0.00 0.00 39.69 5.54
4552 10723 3.540367 TTTTCCCGGTGTCCCTCGC 62.540 63.158 0.00 0.00 0.00 5.03
4566 10737 1.289066 GCCTGCCCTTCCGTTTTTC 59.711 57.895 0.00 0.00 0.00 2.29
4567 10738 2.561037 CGCCTGCCCTTCCGTTTTT 61.561 57.895 0.00 0.00 0.00 1.94
4673 10857 2.805353 CGTCCAGCTTGTCGACGG 60.805 66.667 11.62 5.55 44.26 4.79
4674 10858 2.805353 CCGTCCAGCTTGTCGACG 60.805 66.667 11.62 12.94 46.79 5.12
4675 10859 1.870055 TACCCGTCCAGCTTGTCGAC 61.870 60.000 9.11 9.11 0.00 4.20
4676 10860 1.592400 CTACCCGTCCAGCTTGTCGA 61.592 60.000 6.03 0.00 0.00 4.20
4677 10861 1.153823 CTACCCGTCCAGCTTGTCG 60.154 63.158 0.00 0.00 0.00 4.35
4678 10862 0.320697 AACTACCCGTCCAGCTTGTC 59.679 55.000 0.00 0.00 0.00 3.18
4679 10863 0.320697 GAACTACCCGTCCAGCTTGT 59.679 55.000 0.00 0.00 0.00 3.16
4680 10864 0.320374 TGAACTACCCGTCCAGCTTG 59.680 55.000 0.00 0.00 0.00 4.01
4681 10865 1.207329 GATGAACTACCCGTCCAGCTT 59.793 52.381 0.00 0.00 0.00 3.74
4682 10866 0.824759 GATGAACTACCCGTCCAGCT 59.175 55.000 0.00 0.00 0.00 4.24
4683 10867 0.824759 AGATGAACTACCCGTCCAGC 59.175 55.000 0.00 0.00 0.00 4.85
4684 10868 3.611766 AAAGATGAACTACCCGTCCAG 57.388 47.619 0.00 0.00 0.00 3.86
4685 10869 4.283978 TGTTAAAGATGAACTACCCGTCCA 59.716 41.667 0.00 0.00 0.00 4.02
4686 10870 4.824289 TGTTAAAGATGAACTACCCGTCC 58.176 43.478 0.00 0.00 0.00 4.79
4687 10871 5.163884 GCTTGTTAAAGATGAACTACCCGTC 60.164 44.000 0.00 0.00 35.19 4.79
4688 10872 4.694037 GCTTGTTAAAGATGAACTACCCGT 59.306 41.667 0.00 0.00 35.19 5.28
4689 10873 4.935808 AGCTTGTTAAAGATGAACTACCCG 59.064 41.667 0.00 0.00 35.19 5.28
4699 10883 2.304761 TCCCGTCCAGCTTGTTAAAGAT 59.695 45.455 0.00 0.00 35.19 2.40
4700 10884 1.695242 TCCCGTCCAGCTTGTTAAAGA 59.305 47.619 0.00 0.00 35.19 2.52
4701 10885 2.076863 CTCCCGTCCAGCTTGTTAAAG 58.923 52.381 0.00 0.00 36.41 1.85
4702 10886 1.418637 ACTCCCGTCCAGCTTGTTAAA 59.581 47.619 0.00 0.00 0.00 1.52
4703 10887 1.053424 ACTCCCGTCCAGCTTGTTAA 58.947 50.000 0.00 0.00 0.00 2.01
4704 10888 1.927487 TACTCCCGTCCAGCTTGTTA 58.073 50.000 0.00 0.00 0.00 2.41
4705 10889 1.053424 TTACTCCCGTCCAGCTTGTT 58.947 50.000 0.00 0.00 0.00 2.83
4706 10890 1.276622 ATTACTCCCGTCCAGCTTGT 58.723 50.000 0.00 0.00 0.00 3.16
4707 10891 2.403252 AATTACTCCCGTCCAGCTTG 57.597 50.000 0.00 0.00 0.00 4.01
4708 10892 4.409247 AGATTAATTACTCCCGTCCAGCTT 59.591 41.667 0.00 0.00 0.00 3.74
4709 10893 3.967987 AGATTAATTACTCCCGTCCAGCT 59.032 43.478 0.00 0.00 0.00 4.24
4710 10894 4.202223 TGAGATTAATTACTCCCGTCCAGC 60.202 45.833 0.00 0.00 32.84 4.85
4711 10895 5.531122 TGAGATTAATTACTCCCGTCCAG 57.469 43.478 0.00 0.00 32.84 3.86
4712 10896 5.667466 GTTGAGATTAATTACTCCCGTCCA 58.333 41.667 0.00 0.00 32.84 4.02
4713 10897 4.743644 CGTTGAGATTAATTACTCCCGTCC 59.256 45.833 0.00 0.00 32.84 4.79
4714 10898 4.743644 CCGTTGAGATTAATTACTCCCGTC 59.256 45.833 0.00 0.00 32.84 4.79
4715 10899 4.442472 CCCGTTGAGATTAATTACTCCCGT 60.442 45.833 0.00 0.00 32.84 5.28
4716 10900 4.056050 CCCGTTGAGATTAATTACTCCCG 58.944 47.826 0.00 3.34 32.84 5.14
4717 10901 5.286267 TCCCGTTGAGATTAATTACTCCC 57.714 43.478 0.00 0.00 32.84 4.30
4718 10902 4.750598 GCTCCCGTTGAGATTAATTACTCC 59.249 45.833 3.57 0.00 44.42 3.85
4719 10903 5.357257 TGCTCCCGTTGAGATTAATTACTC 58.643 41.667 3.57 0.00 44.42 2.59
4720 10904 5.353394 TGCTCCCGTTGAGATTAATTACT 57.647 39.130 3.57 0.00 44.42 2.24
4721 10905 5.353123 TGTTGCTCCCGTTGAGATTAATTAC 59.647 40.000 3.57 0.00 44.42 1.89
4722 10906 5.492895 TGTTGCTCCCGTTGAGATTAATTA 58.507 37.500 3.57 0.00 44.42 1.40
4723 10907 4.331968 TGTTGCTCCCGTTGAGATTAATT 58.668 39.130 3.57 0.00 44.42 1.40
4724 10908 3.950397 TGTTGCTCCCGTTGAGATTAAT 58.050 40.909 3.57 0.00 44.42 1.40
4725 10909 3.410631 TGTTGCTCCCGTTGAGATTAA 57.589 42.857 3.57 0.00 44.42 1.40
4726 10910 3.410631 TTGTTGCTCCCGTTGAGATTA 57.589 42.857 3.57 0.00 44.42 1.75
4727 10911 2.270352 TTGTTGCTCCCGTTGAGATT 57.730 45.000 3.57 0.00 44.42 2.40
4728 10912 1.880027 GTTTGTTGCTCCCGTTGAGAT 59.120 47.619 3.57 0.00 44.42 2.75
4729 10913 1.305201 GTTTGTTGCTCCCGTTGAGA 58.695 50.000 3.57 0.00 44.42 3.27
4730 10914 0.310854 GGTTTGTTGCTCCCGTTGAG 59.689 55.000 0.00 0.00 44.47 3.02
4731 10915 0.106918 AGGTTTGTTGCTCCCGTTGA 60.107 50.000 0.00 0.00 0.00 3.18
4732 10916 0.744281 AAGGTTTGTTGCTCCCGTTG 59.256 50.000 0.00 0.00 0.00 4.10
4733 10917 1.480789 AAAGGTTTGTTGCTCCCGTT 58.519 45.000 0.00 0.00 0.00 4.44
4734 10918 1.480789 AAAAGGTTTGTTGCTCCCGT 58.519 45.000 0.00 0.00 0.00 5.28
4735 10919 3.934457 ATAAAAGGTTTGTTGCTCCCG 57.066 42.857 0.00 0.00 0.00 5.14
4736 10920 8.615878 AATAAAATAAAAGGTTTGTTGCTCCC 57.384 30.769 0.00 0.00 0.00 4.30
4761 10945 9.483916 CCTATGTGTGAACATTATTCCGTTATA 57.516 33.333 0.00 0.00 0.00 0.98
4762 10946 8.208224 TCCTATGTGTGAACATTATTCCGTTAT 58.792 33.333 0.00 0.00 0.00 1.89
4763 10947 7.557724 TCCTATGTGTGAACATTATTCCGTTA 58.442 34.615 0.00 0.00 0.00 3.18
4764 10948 6.411376 TCCTATGTGTGAACATTATTCCGTT 58.589 36.000 0.00 0.00 0.00 4.44
4765 10949 5.984725 TCCTATGTGTGAACATTATTCCGT 58.015 37.500 0.00 0.00 0.00 4.69
4766 10950 6.049149 ACTCCTATGTGTGAACATTATTCCG 58.951 40.000 0.00 0.00 0.00 4.30
4767 10951 8.204836 ACTACTCCTATGTGTGAACATTATTCC 58.795 37.037 0.00 0.00 0.00 3.01
4770 10954 9.642343 TCTACTACTCCTATGTGTGAACATTAT 57.358 33.333 0.00 0.00 0.00 1.28
4771 10955 8.900781 GTCTACTACTCCTATGTGTGAACATTA 58.099 37.037 0.00 0.00 0.00 1.90
4772 10956 7.616150 AGTCTACTACTCCTATGTGTGAACATT 59.384 37.037 0.00 0.00 30.33 2.71
4773 10957 7.120051 AGTCTACTACTCCTATGTGTGAACAT 58.880 38.462 0.00 0.00 30.33 2.71
4774 10958 6.482524 AGTCTACTACTCCTATGTGTGAACA 58.517 40.000 0.00 0.00 30.33 3.18
4775 10959 8.680039 ATAGTCTACTACTCCTATGTGTGAAC 57.320 38.462 0.00 0.00 39.80 3.18
4776 10960 9.696572 AAATAGTCTACTACTCCTATGTGTGAA 57.303 33.333 0.00 0.00 39.80 3.18
4777 10961 9.696572 AAAATAGTCTACTACTCCTATGTGTGA 57.303 33.333 0.00 0.00 39.80 3.58
4791 10975 9.520515 ACATCCAATTCACAAAAATAGTCTACT 57.479 29.630 0.00 0.00 0.00 2.57
4794 10978 9.295825 TGTACATCCAATTCACAAAAATAGTCT 57.704 29.630 0.00 0.00 0.00 3.24
4795 10979 9.341899 GTGTACATCCAATTCACAAAAATAGTC 57.658 33.333 0.00 0.00 0.00 2.59
4796 10980 9.077885 AGTGTACATCCAATTCACAAAAATAGT 57.922 29.630 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.