AutoCloner

Multiple sequence alignment - TraesCS6A01G363000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G363000	chr6A	100.000	3452	0	0	1	3452	592469979	592466528	0.000000e+00	6375
1	TraesCS6A01G363000	chr6A	89.298	1710	168	9	721	2419	592599372	592601077	0.000000e+00	2130
2	TraesCS6A01G363000	chr6A	83.847	1622	231	18	819	2423	556038481	556036874	0.000000e+00	1515
3	TraesCS6A01G363000	chr6A	81.260	1857	299	28	812	2639	592458969	592457133	0.000000e+00	1456
4	TraesCS6A01G363000	chr6A	81.030	1845	291	39	817	2636	592618161	592619971	0.000000e+00	1413
5	TraesCS6A01G363000	chr6B	92.980	3476	186	27	1	3452	672500305	672496864	0.000000e+00	5014
6	TraesCS6A01G363000	chr6B	89.328	2305	195	24	130	2419	673763526	673765794	0.000000e+00	2846
7	TraesCS6A01G363000	chr6B	83.047	1628	241	22	813	2423	618670276	618668667	0.000000e+00	1445
8	TraesCS6A01G363000	chr6B	87.656	721	71	10	228	948	9132281	9131579	0.000000e+00	822
9	TraesCS6A01G363000	chr6B	87.517	721	71	11	228	948	22118623	22117922	0.000000e+00	815
10	TraesCS6A01G363000	chr6B	76.596	329	55	15	2277	2600	673897941	673898252	9.910000e-36	161
11	TraesCS6A01G363000	chr6D	94.624	2288	86	17	460	2732	445794208	445791943	0.000000e+00	3509
12	TraesCS6A01G363000	chr6D	84.137	1639	229	16	802	2423	411470987	411469363	0.000000e+00	1557
13	TraesCS6A01G363000	chr6D	81.828	1860	294	24	817	2645	445788965	445787119	0.000000e+00	1522
14	TraesCS6A01G363000	chr6D	81.271	1810	278	40	817	2600	445964301	445966075	0.000000e+00	1408
15	TraesCS6A01G363000	chr6D	94.097	576	27	2	2835	3405	445791948	445791375	0.000000e+00	869
16	TraesCS6A01G363000	chr6D	94.279	402	18	2	1	401	445794613	445794216	8.190000e-171	610
17	TraesCS6A01G363000	chr6D	80.769	130	23	2	2492	2620	445968796	445968924	2.190000e-17	100
18	TraesCS6A01G363000	chr1A	88.211	721	68	10	228	948	69141737	69142440	0.000000e+00	845
19	TraesCS6A01G363000	chr1A	85.645	411	49	4	228	638	486125788	486126188	1.150000e-114	424
20	TraesCS6A01G363000	chr5B	88.252	698	65	9	241	938	667208834	667209514	0.000000e+00	819
21	TraesCS6A01G363000	chr4A	87.870	709	67	11	241	948	635617664	635618354	0.000000e+00	815
22	TraesCS6A01G363000	chr4A	87.006	708	75	9	241	948	635697919	635698609	0.000000e+00	782
23	TraesCS6A01G363000	chr7A	87.217	618	61	9	332	948	305165284	305164684	0.000000e+00	688
24	TraesCS6A01G363000	chr1B	86.131	411	47	7	228	638	64109303	64109703	5.290000e-118	435

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G363000	chr6A	592466528	592469979	3451	True	6375.0	6375	100.000	1	3452	1	chr6A.!!$R3	3451
1	TraesCS6A01G363000	chr6A	592599372	592601077	1705	False	2130.0	2130	89.298	721	2419	1	chr6A.!!$F1	1698
2	TraesCS6A01G363000	chr6A	556036874	556038481	1607	True	1515.0	1515	83.847	819	2423	1	chr6A.!!$R1	1604
3	TraesCS6A01G363000	chr6A	592457133	592458969	1836	True	1456.0	1456	81.260	812	2639	1	chr6A.!!$R2	1827
4	TraesCS6A01G363000	chr6A	592618161	592619971	1810	False	1413.0	1413	81.030	817	2636	1	chr6A.!!$F2	1819
5	TraesCS6A01G363000	chr6B	672496864	672500305	3441	True	5014.0	5014	92.980	1	3452	1	chr6B.!!$R4	3451
6	TraesCS6A01G363000	chr6B	673763526	673765794	2268	False	2846.0	2846	89.328	130	2419	1	chr6B.!!$F1	2289
7	TraesCS6A01G363000	chr6B	618668667	618670276	1609	True	1445.0	1445	83.047	813	2423	1	chr6B.!!$R3	1610
8	TraesCS6A01G363000	chr6B	9131579	9132281	702	True	822.0	822	87.656	228	948	1	chr6B.!!$R1	720
9	TraesCS6A01G363000	chr6B	22117922	22118623	701	True	815.0	815	87.517	228	948	1	chr6B.!!$R2	720
10	TraesCS6A01G363000	chr6D	445787119	445794613	7494	True	1627.5	3509	91.207	1	3405	4	chr6D.!!$R2	3404
11	TraesCS6A01G363000	chr6D	411469363	411470987	1624	True	1557.0	1557	84.137	802	2423	1	chr6D.!!$R1	1621
12	TraesCS6A01G363000	chr6D	445964301	445968924	4623	False	754.0	1408	81.020	817	2620	2	chr6D.!!$F1	1803
13	TraesCS6A01G363000	chr1A	69141737	69142440	703	False	845.0	845	88.211	228	948	1	chr1A.!!$F1	720
14	TraesCS6A01G363000	chr5B	667208834	667209514	680	False	819.0	819	88.252	241	938	1	chr5B.!!$F1	697
15	TraesCS6A01G363000	chr4A	635617664	635618354	690	False	815.0	815	87.870	241	948	1	chr4A.!!$F1	707
16	TraesCS6A01G363000	chr4A	635697919	635698609	690	False	782.0	782	87.006	241	948	1	chr4A.!!$F2	707
17	TraesCS6A01G363000	chr7A	305164684	305165284	600	True	688.0	688	87.217	332	948	1	chr7A.!!$R1	616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
940	978	0.462937	TGTGTGTTCCACCCTGAACG	60.463	55.0	0.0	0.0	46.04	3.95	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2733	10514	0.109153	TGCTATGGCAGGAATCGCAT	59.891	50.0	0.0	0.0	44.28	4.73	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	1.868713	TTACATTAGGCCTGGTCGGA	58.131	50.000	17.99	0.00	33.16	4.55
182	193	2.674754	GGTTCTCCGCCCAATCCA	59.325	61.111	0.00	0.00	0.00	3.41
183	194	1.749258	GGTTCTCCGCCCAATCCAC	60.749	63.158	0.00	0.00	0.00	4.02
184	195	2.106683	GTTCTCCGCCCAATCCACG	61.107	63.158	0.00	0.00	0.00	4.94
185	196	3.969250	TTCTCCGCCCAATCCACGC	62.969	63.158	0.00	0.00	0.00	5.34
416	428	3.005554	CACCTGCTCTGTTAGTTCCATG	58.994	50.000	0.00	0.00	0.00	3.66
444	456	1.336609	GCCTAGGTCGACTTCGTTGTT	60.337	52.381	16.46	0.00	40.80	2.83
574	586	2.507484	TCTGGAGTGTGCAGAAATTGG	58.493	47.619	0.00	0.00	41.94	3.16
576	588	2.624838	CTGGAGTGTGCAGAAATTGGTT	59.375	45.455	0.00	0.00	38.14	3.67
591	603	8.076178	CAGAAATTGGTTTACTCGTCTGATTTT	58.924	33.333	0.00	0.00	0.00	1.82
626	638	3.050619	CCATATACGAGTTCAGTTCGGC	58.949	50.000	0.00	0.00	42.12	5.54
789	809	3.056322	GGAATGGATGCAAATAGGATGCC	60.056	47.826	0.00	0.00	43.16	4.40
886	923	6.708054	AGTTTCATCACTGTTTCCTTCTACAG	59.292	38.462	0.00	0.00	45.61	2.74
938	976	1.562008	TCTTGTGTGTTCCACCCTGAA	59.438	47.619	0.00	0.00	43.85	3.02
940	978	0.462937	TGTGTGTTCCACCCTGAACG	60.463	55.000	0.00	0.00	46.04	3.95
982	1021	1.153667	CTGCAGAGCCTCGAGGTTC	60.154	63.158	33.97	33.97	44.60	3.62
1065	1113	3.562973	GGATTACCGTGTCGAGTGATCTA	59.437	47.826	7.08	0.00	31.56	1.98
1444	1492	2.671619	TGGCCGTTAGTTGCTGCC	60.672	61.111	0.00	0.00	42.49	4.85
1503	1551	3.941657	GAGCGTGGAGTGGCTGGAC	62.942	68.421	0.00	0.00	40.16	4.02
1648	1696	3.618690	ATGGAACTTACTGGCTGAGTC	57.381	47.619	0.00	0.00	35.96	3.36
1878	6827	3.494223	GGTGCTGCAACCTTAAAACCATT	60.494	43.478	6.36	0.00	37.24	3.16
2146	7095	0.038166	GAAGGGCCTGTCATCCACAA	59.962	55.000	6.92	0.00	33.31	3.33
2166	7115	1.859302	AGTTCCTGGAGAAGCTCGAT	58.141	50.000	0.00	0.00	34.29	3.59
2188	7137	3.829026	TCTCGTGGATTGCTGCTCTATAT	59.171	43.478	0.00	0.00	0.00	0.86
2199	7148	3.679361	GCTGCTCTATATCTGATGCTGGG	60.679	52.174	0.00	0.00	0.00	4.45
2248	7197	1.878656	GAGTCACCTCACACTCCGGG	61.879	65.000	0.00	0.00	37.67	5.73
2341	7290	2.588314	GCTGCCGCTGGATCTCTG	60.588	66.667	0.00	0.00	0.00	3.35
2384	7333	4.523943	TGCCAAATCAGTTTGCTACTCATT	59.476	37.500	0.00	0.00	42.66	2.57
2439	7400	4.869215	TGAACGTGTACAGGAAAATACGA	58.131	39.130	21.70	0.00	35.69	3.43
2490	7452	8.586273	GCTGTTAATTTGTGTTGCTATATGTTG	58.414	33.333	0.00	0.00	0.00	3.33
2529	7492	5.924254	CCACAACAGTATGAAAGTAACTCGA	59.076	40.000	0.00	0.00	39.69	4.04
2534	7497	7.171630	ACAGTATGAAAGTAACTCGAAGGAT	57.828	36.000	0.00	0.00	39.69	3.24
2536	7499	8.746530	ACAGTATGAAAGTAACTCGAAGGATAA	58.253	33.333	0.00	0.00	39.69	1.75
2538	7501	9.968870	AGTATGAAAGTAACTCGAAGGATAATC	57.031	33.333	0.00	0.00	0.00	1.75
2540	7503	6.860080	TGAAAGTAACTCGAAGGATAATCGT	58.140	36.000	0.00	0.00	40.99	3.73
2624	10402	6.521133	GCAGTGTGAGATTCGTTTTAGAAATG	59.479	38.462	0.00	0.00	33.43	2.32
2650	10431	4.261322	CCAGAATTCGTGATTATGGCTTGG	60.261	45.833	12.50	0.00	46.72	3.61
2651	10432	3.316308	AGAATTCGTGATTATGGCTTGGC	59.684	43.478	0.00	0.00	0.00	4.52
2653	10434	2.121291	TCGTGATTATGGCTTGGCAA	57.879	45.000	0.00	0.00	0.00	4.52
2678	10459	0.106918	TGTGCCGGTTCTGGTCTTTT	60.107	50.000	1.90	0.00	0.00	2.27
2686	10467	3.119637	CGGTTCTGGTCTTTTGTGTGTTT	60.120	43.478	0.00	0.00	0.00	2.83
2691	10472	3.321497	TGGTCTTTTGTGTGTTTGTTGC	58.679	40.909	0.00	0.00	0.00	4.17
2701	10482	3.959975	TTTGTTGCGCGGCACCTC	61.960	61.111	8.83	1.00	38.71	3.85
2709	10490	2.825836	GCGGCACCTCCTCCATTG	60.826	66.667	0.00	0.00	0.00	2.82
2733	10514	1.524393	CCATGTGCAGCGCCTGATA	60.524	57.895	12.39	0.00	32.44	2.15
2747	10528	1.271001	CCTGATATGCGATTCCTGCCA	60.271	52.381	0.00	0.00	0.00	4.92
2789	10570	9.136323	TGATCTATGTGAGTACATTGTAGTGAT	57.864	33.333	8.88	4.64	45.01	3.06
2833	10614	2.203750	TGGGCATTTGGGGCACTT	59.796	55.556	0.00	0.00	35.15	3.16
2925	10706	0.389948	CCACCGAGGAGGAGTTTTCG	60.390	60.000	0.00	0.00	45.00	3.46
2931	10713	4.161754	ACCGAGGAGGAGTTTTCGATAATT	59.838	41.667	0.00	0.00	45.00	1.40
2996	10778	4.292306	AGATCTCCAAACATGGTACCCTTT	59.708	41.667	10.07	1.42	0.00	3.11
3083	10865	6.320164	TGCAATATTTAAGGTTCAGGCGTAAT	59.680	34.615	0.00	0.00	0.00	1.89
3104	10886	4.365514	TTGAGCACATTAAACCTGGAGA	57.634	40.909	0.00	0.00	0.00	3.71
3119	10901	3.896888	CCTGGAGATGAGATCTGCTAACT	59.103	47.826	0.00	0.00	46.53	2.24
3120	10902	5.076182	CCTGGAGATGAGATCTGCTAACTA	58.924	45.833	0.00	0.00	46.53	2.24
3183	10965	7.498900	TCTGAACTTATCAACTCAACACATGTT	59.501	33.333	0.00	0.00	37.67	2.71
3185	10967	7.281999	TGAACTTATCAACTCAACACATGTTCA	59.718	33.333	0.00	0.00	37.25	3.18
3187	10969	6.542005	ACTTATCAACTCAACACATGTTCACA	59.458	34.615	0.00	0.00	35.83	3.58
3203	10985	4.118410	GTTCACACATGAAACAAATGCCA	58.882	39.130	0.00	0.00	46.40	4.92
3221	11004	5.682943	TGCCATTTTACTACACTGAACAC	57.317	39.130	0.00	0.00	0.00	3.32
3236	11019	6.823689	ACACTGAACACTCATGGTAATATTCC	59.176	38.462	0.00	0.00	0.00	3.01
3237	11020	6.823182	CACTGAACACTCATGGTAATATTCCA	59.177	38.462	8.48	8.48	39.41	3.53
3279	11063	6.208204	GGCAAGATCTATGTAAAATGGCAGAT	59.792	38.462	0.00	0.00	32.96	2.90
3317	11101	0.376152	CATCACAGCCAAGACGATGC	59.624	55.000	0.00	0.00	0.00	3.91
3324	11108	1.975363	GCCAAGACGATGCTGCTGTC	61.975	60.000	0.00	6.67	0.00	3.51
3329	11113	0.803768	GACGATGCTGCTGTCGACAT	60.804	55.000	26.09	2.07	40.11	3.06
3330	11114	0.390340	ACGATGCTGCTGTCGACATT	60.390	50.000	26.09	8.39	40.11	2.71
3361	11145	2.565391	TCGGATGGCTGAAACTACTCAA	59.435	45.455	0.00	0.00	0.00	3.02
3415	11199	4.581493	GCTTTCTGCTTTTGTTTTTCTGC	58.419	39.130	0.00	0.00	38.95	4.26
3418	11202	6.621380	GCTTTCTGCTTTTGTTTTTCTGCTTT	60.621	34.615	0.00	0.00	38.95	3.51
3437	11221	7.227314	TCTGCTTTATTAGTGATGTAATGGCTG	59.773	37.037	0.00	0.00	0.00	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
100	101	1.411493	GGCTTCGCAGTAGTACGCAC	61.411	60.000	14.47	0.00	0.00	5.34
166	169	2.106683	CGTGGATTGGGCGGAGAAC	61.107	63.158	0.00	0.00	0.00	3.01
182	193	2.510691	CGGCGGTGATTAAGGCGT	60.511	61.111	0.00	0.00	46.52	5.68
184	195	0.098200	GAAACGGCGGTGATTAAGGC	59.902	55.000	13.24	0.00	0.00	4.35
185	196	0.730840	GGAAACGGCGGTGATTAAGG	59.269	55.000	13.24	0.00	0.00	2.69
186	197	1.664151	GAGGAAACGGCGGTGATTAAG	59.336	52.381	13.24	0.00	0.00	1.85
187	198	1.676615	GGAGGAAACGGCGGTGATTAA	60.677	52.381	13.24	0.00	0.00	1.40
188	199	0.108041	GGAGGAAACGGCGGTGATTA	60.108	55.000	13.24	0.00	0.00	1.75
336	348	3.433615	CGACCAAGTTCAGATGGAAGAAC	59.566	47.826	0.00	0.00	43.33	3.01
454	466	2.682858	GCGGCCTAATTCCCTTAACAGT	60.683	50.000	0.00	0.00	0.00	3.55
626	638	6.066690	ACATGATATCTGAACATTCCCCTTG	58.933	40.000	0.00	0.00	0.00	3.61
749	769	5.107065	CCATTCCGTAGAACAAAGAAGTGAC	60.107	44.000	0.00	0.00	33.97	3.67
889	926	8.677300	ACCAGATAACAGCTGTAACAAATAATG	58.323	33.333	22.01	10.41	0.00	1.90
890	927	8.807948	ACCAGATAACAGCTGTAACAAATAAT	57.192	30.769	22.01	3.16	0.00	1.28
891	928	8.630054	AACCAGATAACAGCTGTAACAAATAA	57.370	30.769	22.01	0.00	0.00	1.40
892	929	9.899661	ATAACCAGATAACAGCTGTAACAAATA	57.100	29.630	22.01	8.04	0.00	1.40
951	989	2.047274	TGCAGGCGCTGGACTAAC	60.047	61.111	7.64	0.00	39.64	2.34
952	990	2.230994	CTCTGCAGGCGCTGGACTAA	62.231	60.000	15.13	0.00	39.64	2.24
982	1021	0.896940	ATCAGCTGCACAACTTGGGG	60.897	55.000	9.47	0.00	0.00	4.96
1065	1113	3.476552	TGACACGAGGCAAAGAGAATTT	58.523	40.909	0.00	0.00	0.00	1.82
1444	1492	3.260380	ACAAGGTGGAGAACAGAGAGATG	59.740	47.826	0.00	0.00	0.00	2.90
1503	1551	8.649591	CCTAATGATCCATATCTCCCAAGATAG	58.350	40.741	2.04	0.00	45.42	2.08
1648	1696	1.475169	TATGAGGGATCAGGGCGCTG	61.475	60.000	23.98	23.98	0.00	5.18
1967	6916	2.642311	TCAACAACCTGAAGCATAGGGA	59.358	45.455	5.98	0.00	39.71	4.20
2015	6964	7.439655	GTGTGAAGCCTATTTCAGTAGGATAAG	59.560	40.741	4.21	0.00	43.27	1.73
2053	7002	3.496130	GGACATGATTGGATAAGCGTCAG	59.504	47.826	0.00	0.00	0.00	3.51
2146	7095	1.633774	TCGAGCTTCTCCAGGAACTT	58.366	50.000	0.00	0.00	34.60	2.66
2166	7115	1.474330	TAGAGCAGCAATCCACGAGA	58.526	50.000	0.00	0.00	0.00	4.04
2188	7137	2.042464	GAGGTACATCCCAGCATCAGA	58.958	52.381	0.00	0.00	36.75	3.27
2199	7148	2.158842	AGCCTGAGCAATGAGGTACATC	60.159	50.000	0.00	0.00	43.56	3.06
2248	7197	6.699204	CCATCATCTGTCACACTACTACATTC	59.301	42.308	0.00	0.00	0.00	2.67
2341	7290	2.930562	ACCCTGCACACCCTCCTC	60.931	66.667	0.00	0.00	0.00	3.71
2384	7333	1.699083	TGTCATGGCTTTCAGTCTCCA	59.301	47.619	0.00	0.00	0.00	3.86
2490	7452	3.186909	GTTGTGGTTTCAAAGTTCTGCC	58.813	45.455	0.00	0.00	0.00	4.85
2529	7492	4.706842	AATGGCAGGTACGATTATCCTT	57.293	40.909	0.00	0.00	0.00	3.36
2534	7497	4.163458	AGAAGGAAATGGCAGGTACGATTA	59.837	41.667	0.00	0.00	0.00	1.75
2536	7499	2.505819	AGAAGGAAATGGCAGGTACGAT	59.494	45.455	0.00	0.00	0.00	3.73
2538	7501	2.009774	CAGAAGGAAATGGCAGGTACG	58.990	52.381	0.00	0.00	0.00	3.67
2540	7503	2.806945	CCAGAAGGAAATGGCAGGTA	57.193	50.000	0.00	0.00	36.89	3.08
2624	10402	4.214980	CCATAATCACGAATTCTGGCAC	57.785	45.455	3.52	0.00	35.52	5.01
2650	10431	1.001745	GAACCGGCACAAACGATTGC	61.002	55.000	0.00	0.00	40.34	3.56
2651	10432	0.591170	AGAACCGGCACAAACGATTG	59.409	50.000	0.00	3.59	42.46	2.67
2653	10434	1.234615	CCAGAACCGGCACAAACGAT	61.235	55.000	0.00	0.00	0.00	3.73
2678	10459	2.101185	CCGCGCAACAAACACACA	59.899	55.556	8.75	0.00	0.00	3.72
2691	10472	4.473520	AATGGAGGAGGTGCCGCG	62.474	66.667	0.00	0.00	43.43	6.46
2709	10490	1.354506	GCGCTGCACATGGAGAATC	59.645	57.895	0.00	0.00	35.31	2.52
2733	10514	0.109153	TGCTATGGCAGGAATCGCAT	59.891	50.000	0.00	0.00	44.28	4.73
2789	10570	7.386059	TGATTAGTGATTACTGTCAGCAAGAA	58.614	34.615	0.00	0.00	37.78	2.52
2861	10642	1.478510	AGGATTGAGCTGAGGTGTACG	59.521	52.381	0.00	0.00	0.00	3.67
2871	10652	2.440627	TGCATCATACCAGGATTGAGCT	59.559	45.455	0.00	0.00	0.00	4.09
2931	10713	9.383519	CACCTTTCAGATAGCTACAATAAAAGA	57.616	33.333	14.35	0.00	0.00	2.52
2990	10772	8.057011	ACACCGAGGATATAAAAATAAAAGGGT	58.943	33.333	0.00	0.00	0.00	4.34
3008	10790	7.995463	TCTTTTGAAATTTAAAACACCGAGG	57.005	32.000	0.00	0.00	0.00	4.63
3070	10852	1.130561	GTGCTCAATTACGCCTGAACC	59.869	52.381	0.00	0.00	0.00	3.62
3083	10865	4.365514	TCTCCAGGTTTAATGTGCTCAA	57.634	40.909	0.00	0.00	0.00	3.02
3183	10965	4.603989	ATGGCATTTGTTTCATGTGTGA	57.396	36.364	0.00	0.00	0.00	3.58
3185	10967	6.991531	AGTAAAATGGCATTTGTTTCATGTGT	59.008	30.769	24.96	8.68	31.77	3.72
3187	10969	8.147058	TGTAGTAAAATGGCATTTGTTTCATGT	58.853	29.630	24.96	10.05	31.77	3.21
3203	10985	7.224297	ACCATGAGTGTTCAGTGTAGTAAAAT	58.776	34.615	0.00	0.00	36.61	1.82
3221	11004	7.872993	AGTGTAACGATGGAATATTACCATGAG	59.127	37.037	18.45	15.01	46.48	2.90
3236	11019	5.637810	TCTTGCCTTCTTTAGTGTAACGATG	59.362	40.000	0.00	0.00	45.86	3.84
3237	11020	5.790593	TCTTGCCTTCTTTAGTGTAACGAT	58.209	37.500	0.00	0.00	45.86	3.73
3279	11063	9.786105	CTGTGATGCAACAATGTATATGTTTTA	57.214	29.630	0.00	0.00	38.90	1.52
3317	11101	2.602211	GACAGATCAATGTCGACAGCAG	59.398	50.000	24.41	15.33	40.18	4.24
3329	11113	1.764723	AGCCATCCGATGACAGATCAA	59.235	47.619	10.12	0.00	38.69	2.57
3330	11114	1.069668	CAGCCATCCGATGACAGATCA	59.930	52.381	10.12	0.00	39.83	2.92
3361	11145	2.681344	GGAAATTCAAATAGCGACCCGT	59.319	45.455	0.00	0.00	0.00	5.28
3409	11193	8.405531	GCCATTACATCACTAATAAAGCAGAAA	58.594	33.333	0.00	0.00	0.00	2.52
3410	11194	7.775093	AGCCATTACATCACTAATAAAGCAGAA	59.225	33.333	0.00	0.00	0.00	3.02
3411	11195	7.227314	CAGCCATTACATCACTAATAAAGCAGA	59.773	37.037	0.00	0.00	0.00	4.26
3412	11196	7.358066	CAGCCATTACATCACTAATAAAGCAG	58.642	38.462	0.00	0.00	0.00	4.24
3413	11197	6.238731	GCAGCCATTACATCACTAATAAAGCA	60.239	38.462	0.00	0.00	0.00	3.91
3414	11198	6.145535	GCAGCCATTACATCACTAATAAAGC	58.854	40.000	0.00	0.00	0.00	3.51
3415	11199	7.263100	TGCAGCCATTACATCACTAATAAAG	57.737	36.000	0.00	0.00	0.00	1.85
3418	11202	6.591001	TCTTGCAGCCATTACATCACTAATA	58.409	36.000	0.00	0.00	0.00	0.98

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.