AutoCloner

Multiple sequence alignment - TraesCS6A01G361200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G361200	chr6A	100.000	2717	0	0	1	2717	591805840	591803124	0.000000e+00	5018
1	TraesCS6A01G361200	chr6A	84.467	1191	164	13	548	1727	591985445	591986625	0.000000e+00	1155
2	TraesCS6A01G361200	chr6A	84.314	357	47	3	1757	2106	591986624	591986978	9.320000e-90	340
3	TraesCS6A01G361200	chr6A	80.124	161	26	5	2389	2548	446898244	446898089	6.150000e-22	115
4	TraesCS6A01G361200	chr6D	90.684	1492	91	14	275	1727	444461591	444460109	0.000000e+00	1941
5	TraesCS6A01G361200	chr6D	93.839	909	39	6	1824	2717	444459991	444459085	0.000000e+00	1352
6	TraesCS6A01G361200	chr6D	84.594	1084	155	8	651	1727	445308783	445309861	0.000000e+00	1066
7	TraesCS6A01G361200	chr6D	86.809	940	115	5	796	1727	445263170	445264108	0.000000e+00	1040
8	TraesCS6A01G361200	chr6D	84.034	357	48	3	1757	2106	445264107	445264461	4.330000e-88	335
9	TraesCS6A01G361200	chr6D	87.375	301	27	8	1757	2049	445309860	445310157	4.330000e-88	335
10	TraesCS6A01G361200	chr6D	83.754	357	49	3	1757	2106	445191619	445191973	2.020000e-86	329
11	TraesCS6A01G361200	chr6D	91.765	170	13	1	2	170	444462141	444461972	4.520000e-58	235
12	TraesCS6A01G361200	chr6D	98.165	109	2	0	168	276	444461756	444461648	9.930000e-45	191
13	TraesCS6A01G361200	chr6D	79.842	253	31	7	1860	2106	445334430	445334668	1.670000e-37	167
14	TraesCS6A01G361200	chr6D	97.561	82	1	1	1757	1837	444460110	444460029	3.650000e-29	139
15	TraesCS6A01G361200	chr6B	95.191	811	29	6	1911	2717	668910128	668909324	0.000000e+00	1273
16	TraesCS6A01G361200	chr6B	89.842	1014	65	16	275	1264	668911869	668910870	0.000000e+00	1267
17	TraesCS6A01G361200	chr6B	84.246	1187	169	15	548	1727	671471518	671470343	0.000000e+00	1140
18	TraesCS6A01G361200	chr6B	84.241	1193	163	16	548	1727	670212521	670213701	0.000000e+00	1138
19	TraesCS6A01G361200	chr6B	91.753	485	35	4	1247	1727	668910717	668910234	0.000000e+00	669
20	TraesCS6A01G361200	chr6B	83.095	420	59	9	1757	2166	671470344	671469927	3.300000e-99	372
21	TraesCS6A01G361200	chr6B	85.882	340	39	3	1757	2089	670213700	670214037	1.200000e-93	353
22	TraesCS6A01G361200	chr6B	92.982	171	11	1	1	170	668912451	668912281	5.810000e-62	248
23	TraesCS6A01G361200	chr6B	98.148	108	1	1	1757	1863	668910235	668910128	1.280000e-43	187
24	TraesCS6A01G361200	chr6B	79.141	163	24	9	2389	2548	478759970	478760125	1.330000e-18	104
25	TraesCS6A01G361200	chrUn	85.095	899	118	6	833	1727	79232453	79233339	0.000000e+00	904
26	TraesCS6A01G361200	chrUn	81.971	477	63	12	305	768	79230816	79231282	1.530000e-102	383
27	TraesCS6A01G361200	chrUn	84.034	357	48	3	1757	2106	79233338	79233692	4.330000e-88	335
28	TraesCS6A01G361200	chr3D	82.530	166	23	5	2385	2549	400694374	400694534	1.010000e-29	141
29	TraesCS6A01G361200	chr7D	81.988	161	19	6	2389	2547	3249349	3249197	7.900000e-26	128
30	TraesCS6A01G361200	chr7D	82.979	141	13	9	2403	2540	3364471	3364603	1.710000e-22	117
31	TraesCS6A01G361200	chr2B	82.432	148	19	5	2403	2549	508959390	508959531	3.670000e-24	122
32	TraesCS6A01G361200	chr2D	80.921	152	24	4	2403	2553	430625510	430625657	6.150000e-22	115

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G361200	chr6A	591803124	591805840	2716	True	5018.000000	5018	100.0000	1	2717	1	chr6A.!!$R2	2716
1	TraesCS6A01G361200	chr6A	591985445	591986978	1533	False	747.500000	1155	84.3905	548	2106	2	chr6A.!!$F1	1558
2	TraesCS6A01G361200	chr6D	444459085	444462141	3056	True	771.600000	1941	94.4028	2	2717	5	chr6D.!!$R1	2715
3	TraesCS6A01G361200	chr6D	445308783	445310157	1374	False	700.500000	1066	85.9845	651	2049	2	chr6D.!!$F4	1398
4	TraesCS6A01G361200	chr6D	445263170	445264461	1291	False	687.500000	1040	85.4215	796	2106	2	chr6D.!!$F3	1310
5	TraesCS6A01G361200	chr6B	671469927	671471518	1591	True	756.000000	1140	83.6705	548	2166	2	chr6B.!!$R2	1618
6	TraesCS6A01G361200	chr6B	670212521	670214037	1516	False	745.500000	1138	85.0615	548	2089	2	chr6B.!!$F2	1541
7	TraesCS6A01G361200	chr6B	668909324	668912451	3127	True	728.800000	1273	93.5832	1	2717	5	chr6B.!!$R1	2716
8	TraesCS6A01G361200	chrUn	79230816	79233692	2876	False	540.666667	904	83.7000	305	2106	3	chrUn.!!$F1	1801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
640	980	0.107654	GCCAGTGTCCTGATGGTACC	60.108	60.0	4.43	4.43	41.5	3.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1751	3431	0.032813	CCATGACTTGGGGATTGCCT	60.033	55.0	0.0	0.0	42.33	4.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	3.986006	TCTTCGCCTTCGTGCCGT	61.986	61.111	0.00	0.00	36.96	5.68
53	54	2.813908	GCCTTCGTGCCGTAGTGG	60.814	66.667	1.87	0.00	42.50	4.00
131	132	6.093495	GGTCATGGTCTTAATTTTGATCGTGA	59.907	38.462	9.90	9.90	37.10	4.35
132	133	7.182761	GTCATGGTCTTAATTTTGATCGTGAG	58.817	38.462	12.77	0.00	39.22	3.51
150	152	1.547372	GAGCAAGTTGTCATGGGCATT	59.453	47.619	4.48	0.00	0.00	3.56
244	508	3.601443	ATGAAGTTTCTCAGTCTCCCG	57.399	47.619	0.00	0.00	0.00	5.14
265	529	5.643777	CCCGAGTTGTGTTTATCTCTGAATT	59.356	40.000	0.00	0.00	0.00	2.17
321	652	5.105106	TGAATGTGACATCTACCCGTGTTAT	60.105	40.000	0.00	0.00	0.00	1.89
324	655	3.101437	TGACATCTACCCGTGTTATGGT	58.899	45.455	0.00	0.00	38.69	3.55
327	658	3.118884	ACATCTACCCGTGTTATGGTCAC	60.119	47.826	0.00	0.00	36.04	3.67
425	756	9.042450	TGGATGTGAAGGTACTAGAATAAAGAA	57.958	33.333	0.00	0.00	38.49	2.52
521	852	9.381038	AGATTCTTACCTTCTTAGCATATGGTA	57.619	33.333	10.55	10.55	0.00	3.25
529	860	9.251440	ACCTTCTTAGCATATGGTATATTCGTA	57.749	33.333	15.04	0.00	0.00	3.43
556	896	9.436957	AATATTTATATGTCCCTCATTGACGAC	57.563	33.333	0.00	3.25	37.91	4.34
603	943	5.823209	TGTTATGGAATCTGCATCAACAG	57.177	39.130	0.00	0.00	39.12	3.16
615	955	1.815003	CATCAACAGCCCTGGAACTTC	59.185	52.381	0.00	0.00	34.19	3.01
640	980	0.107654	GCCAGTGTCCTGATGGTACC	60.108	60.000	4.43	4.43	41.50	3.34
641	981	1.573108	CCAGTGTCCTGATGGTACCT	58.427	55.000	14.36	0.00	41.50	3.08
642	982	2.747177	CCAGTGTCCTGATGGTACCTA	58.253	52.381	14.36	0.00	41.50	3.08
643	983	2.431057	CCAGTGTCCTGATGGTACCTAC	59.569	54.545	14.36	7.67	41.50	3.18
644	984	3.096852	CAGTGTCCTGATGGTACCTACA	58.903	50.000	14.36	11.88	41.50	2.74
654	994	5.191426	TGATGGTACCTACACTACAGAGAC	58.809	45.833	14.36	0.00	0.00	3.36
777	1122	4.549458	ACAATTTGAATGCTCCAAACTCG	58.451	39.130	2.79	0.00	36.48	4.18
786	1131	1.419374	CTCCAAACTCGTGACTTCGG	58.581	55.000	0.00	0.00	0.00	4.30
821	1166	5.754782	TGATGCCATATTTTACAGGTCTGT	58.245	37.500	8.74	8.74	46.87	3.41
849	2319	2.826725	GTCTAGTAGTCAGTGGTGGCTT	59.173	50.000	0.00	0.00	40.04	4.35
865	2335	4.866486	GGTGGCTTGATTATTTTGCTTCTG	59.134	41.667	0.00	0.00	0.00	3.02
1004	2478	6.974965	AGACAGATTTTGGTGAAAGAATGAC	58.025	36.000	0.00	0.00	0.00	3.06
1046	2520	2.629617	AGAAGGCCACAGACAATTTTGG	59.370	45.455	5.01	0.00	0.00	3.28
1101	2575	9.026074	CACGGTGTTGTGTATAAAAGAATTTTT	57.974	29.630	0.00	0.00	40.83	1.94
1138	2612	4.602107	TGCCATCAAGAAATCCAAGATCA	58.398	39.130	0.00	0.00	0.00	2.92
1145	2619	6.878317	TCAAGAAATCCAAGATCATCGTACT	58.122	36.000	0.00	0.00	0.00	2.73
1153	2627	5.830457	TCCAAGATCATCGTACTGAGAGAAT	59.170	40.000	0.00	0.00	0.00	2.40
1154	2628	5.919707	CCAAGATCATCGTACTGAGAGAATG	59.080	44.000	0.00	0.00	0.00	2.67
1178	2652	5.408604	GTGATGACTTCATAAACGAGGTTGT	59.591	40.000	0.00	0.00	36.54	3.32
1201	2675	7.372714	TGTGATTCTTTCTCAAATCAACCATG	58.627	34.615	0.00	0.00	41.99	3.66
1233	2707	4.268884	GTGAAGCTAATCGGATGTTGTCTC	59.731	45.833	0.00	0.00	0.00	3.36
1281	2925	9.906660	GTTTATGAGTTCATTTCAAATGGTACA	57.093	29.630	10.30	6.50	39.51	2.90
1318	2962	4.277476	TCATTTTGAAGGCCCGATGTTAT	58.723	39.130	0.00	0.00	0.00	1.89
1334	2978	7.049754	CCGATGTTATTATCATGGGATGATCA	58.950	38.462	0.00	0.00	46.62	2.92
1346	2990	6.807474	TCATGGGATGATCAAACAAGGATTGA	60.807	38.462	0.00	0.00	40.96	2.57
1496	3140	4.130118	GCTTCGAGATACATCCCAATTGT	58.870	43.478	4.43	0.00	0.00	2.71
1519	3163	4.101898	TCAAAACAGGGTTGACTACAGCTA	59.898	41.667	0.00	0.00	30.08	3.32
1592	3245	5.106908	GCCTAACAGACAAGAGTGATGTTTC	60.107	44.000	0.00	0.00	38.37	2.78
1596	3249	5.233988	ACAGACAAGAGTGATGTTTCTAGC	58.766	41.667	0.00	0.00	0.00	3.42
1603	3269	4.999950	AGAGTGATGTTTCTAGCTTTGGTG	59.000	41.667	0.00	0.00	0.00	4.17
1604	3270	4.718961	AGTGATGTTTCTAGCTTTGGTGT	58.281	39.130	0.00	0.00	0.00	4.16
1605	3271	5.865085	AGTGATGTTTCTAGCTTTGGTGTA	58.135	37.500	0.00	0.00	0.00	2.90
1625	3294	9.401058	TGGTGTACTTATAGAACTCCTAACTAC	57.599	37.037	0.00	0.00	0.00	2.73
1674	3354	2.235016	GGCAATGGTGTTGGTCTTGTA	58.765	47.619	0.00	0.00	0.00	2.41
1714	3394	2.681848	CTCGCAGAAGGCAATCTTGATT	59.318	45.455	0.00	0.00	45.17	2.57
1725	3405	5.889853	AGGCAATCTTGATTGAGCTAATTGA	59.110	36.000	22.85	0.00	33.55	2.57
1726	3406	6.550108	AGGCAATCTTGATTGAGCTAATTGAT	59.450	34.615	22.85	0.00	33.55	2.57
1727	3407	7.069578	AGGCAATCTTGATTGAGCTAATTGATT	59.930	33.333	22.85	0.00	33.55	2.57
1728	3408	7.709613	GGCAATCTTGATTGAGCTAATTGATTT	59.290	33.333	22.85	0.00	33.55	2.17
1729	3409	9.095065	GCAATCTTGATTGAGCTAATTGATTTT	57.905	29.630	22.85	0.00	33.55	1.82
1748	3428	2.248280	TTTTGGTTGAGCTACTCGCA	57.752	45.000	0.00	0.00	42.61	5.10
1749	3429	1.795768	TTTGGTTGAGCTACTCGCAG	58.204	50.000	0.00	0.00	42.61	5.18
1750	3430	0.966179	TTGGTTGAGCTACTCGCAGA	59.034	50.000	0.00	0.00	42.61	4.26
1751	3431	0.966179	TGGTTGAGCTACTCGCAGAA	59.034	50.000	0.00	0.00	42.61	3.02
1752	3432	1.067565	TGGTTGAGCTACTCGCAGAAG	60.068	52.381	0.00	0.00	42.61	2.85
1753	3433	1.634702	GTTGAGCTACTCGCAGAAGG	58.365	55.000	0.00	0.00	42.61	3.46
1754	3434	0.108615	TTGAGCTACTCGCAGAAGGC	60.109	55.000	0.00	0.00	42.61	4.35
1755	3435	1.250840	TGAGCTACTCGCAGAAGGCA	61.251	55.000	0.00	0.00	45.17	4.75
1951	3689	6.389869	ACAGGGATCAAATTGGGTCTCTATAA	59.610	38.462	0.00	0.00	0.00	0.98
1996	3734	2.632377	GAAGCTAGCAGGCAATACACA	58.368	47.619	18.83	0.00	34.17	3.72
1997	3735	2.029838	AGCTAGCAGGCAATACACAC	57.970	50.000	18.83	0.00	34.17	3.82
2122	3860	1.327764	CGAACTGAAGAATAAGGCGGC	59.672	52.381	0.00	0.00	0.00	6.53
2220	3963	3.270027	TGCATATAAGTGTGTGCTGGTC	58.730	45.455	0.00	0.00	38.37	4.02
2252	3995	8.581578	TCCATGTCAAATGATTGGATATCAATG	58.418	33.333	4.83	0.00	45.36	2.82
2445	4190	5.163447	GGTTTGTCCTAGCCAAACTTCTTTT	60.163	40.000	23.90	0.00	46.81	2.27
2677	4434	6.673097	ACCATAATCTCATGAGCCTATCATCT	59.327	38.462	18.36	0.00	46.01	2.90
2690	4447	4.415596	CCTATCATCTAAGCCTCTCCAGT	58.584	47.826	0.00	0.00	0.00	4.00
2706	4463	8.255905	GCCTCTCCAGTAAGTAAGTTTAACATA	58.744	37.037	0.00	0.00	0.00	2.29

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
9	10	2.857483	CCATTGGTATGGCATACGGAA	58.143	47.619	26.53	21.82	44.64	4.30
48	49	1.036707	GGCAAAAACTGTGGCCACTA	58.963	50.000	34.75	20.52	45.70	2.74
53	54	1.006086	GTTGTGGCAAAAACTGTGGC	58.994	50.000	0.00	0.00	41.71	5.01
131	132	1.636148	AATGCCCATGACAACTTGCT	58.364	45.000	0.00	0.00	0.00	3.91
132	133	2.493278	AGTAATGCCCATGACAACTTGC	59.507	45.455	0.00	0.00	0.00	4.01
150	152	1.369692	CACCAGAACACCGGCAGTA	59.630	57.895	0.00	0.00	0.00	2.74
321	652	1.339535	TGTGTGTTTCTGCAGTGACCA	60.340	47.619	14.67	10.46	0.00	4.02
324	655	1.948834	CCATGTGTGTTTCTGCAGTGA	59.051	47.619	14.67	0.54	0.00	3.41
327	658	1.538512	CCTCCATGTGTGTTTCTGCAG	59.461	52.381	7.63	7.63	0.00	4.41
556	896	2.185004	ATTCTTCCGGGTGTTCACAG	57.815	50.000	0.00	0.00	0.00	3.66
603	943	1.607801	GCAATGGGAAGTTCCAGGGC	61.608	60.000	23.33	15.96	40.56	5.19
615	955	0.033796	ATCAGGACACTGGCAATGGG	60.034	55.000	0.00	0.00	44.99	4.00
640	980	5.360999	TCATCAATGGGTCTCTGTAGTGTAG	59.639	44.000	0.00	0.00	0.00	2.74
641	981	5.269189	TCATCAATGGGTCTCTGTAGTGTA	58.731	41.667	0.00	0.00	0.00	2.90
642	982	4.096681	TCATCAATGGGTCTCTGTAGTGT	58.903	43.478	0.00	0.00	0.00	3.55
643	983	4.743057	TCATCAATGGGTCTCTGTAGTG	57.257	45.455	0.00	0.00	0.00	2.74
644	984	5.013079	TGTTTCATCAATGGGTCTCTGTAGT	59.987	40.000	0.00	0.00	0.00	2.73
654	994	2.101917	GCATCCCTGTTTCATCAATGGG	59.898	50.000	0.00	0.00	34.14	4.00
777	1122	0.318762	AGGTGAAGAGCCGAAGTCAC	59.681	55.000	0.00	0.00	0.00	3.67
786	1131	2.627515	TGGCATCATAGGTGAAGAGC	57.372	50.000	0.00	0.00	38.01	4.09
821	1166	5.886474	CACCACTGACTACTAGACCTATGAA	59.114	44.000	0.00	0.00	0.00	2.57
849	2319	6.434028	AGCAAGTACCAGAAGCAAAATAATCA	59.566	34.615	0.00	0.00	0.00	2.57
865	2335	1.678970	CAAGGGGGCAGCAAGTACC	60.679	63.158	0.00	0.00	0.00	3.34
940	2413	5.808366	TGCAACAATAACCCATGGTTTTA	57.192	34.783	11.73	8.20	44.33	1.52
945	2418	3.587923	CTGTTGCAACAATAACCCATGG	58.412	45.455	30.62	12.91	38.66	3.66
949	2422	4.513198	TTAGCTGTTGCAACAATAACCC	57.487	40.909	30.62	15.30	42.74	4.11
1004	2478	6.439636	TCTCTATATCCAACAAGGGAATGG	57.560	41.667	0.00	0.00	41.12	3.16
1046	2520	0.458716	GCCTGCCTCACGAGTTCTAC	60.459	60.000	0.00	0.00	0.00	2.59
1138	2612	5.592282	AGTCATCACATTCTCTCAGTACGAT	59.408	40.000	0.00	0.00	0.00	3.73
1145	2619	7.276438	CGTTTATGAAGTCATCACATTCTCTCA	59.724	37.037	0.00	0.00	41.93	3.27
1153	2627	5.147330	ACCTCGTTTATGAAGTCATCACA	57.853	39.130	0.00	0.00	41.93	3.58
1154	2628	5.408604	ACAACCTCGTTTATGAAGTCATCAC	59.591	40.000	0.00	0.00	41.93	3.06
1178	2652	6.720748	TCCATGGTTGATTTGAGAAAGAATCA	59.279	34.615	12.58	0.00	39.71	2.57
1201	2675	6.861065	TCCGATTAGCTTCACAATATTTCC	57.139	37.500	0.00	0.00	0.00	3.13
1281	2925	7.528996	TTCAAAATGAAGATGGTGATCAAGT	57.471	32.000	0.00	0.00	31.83	3.16
1334	2978	5.594926	CAACTTCAAGCTCAATCCTTGTTT	58.405	37.500	0.00	0.00	40.35	2.83
1346	2990	2.566724	AGAGCTCTAGCAACTTCAAGCT	59.433	45.455	16.50	0.00	45.16	3.74
1496	3140	3.118038	AGCTGTAGTCAACCCTGTTTTGA	60.118	43.478	0.00	0.00	0.00	2.69
1519	3163	4.510167	AGTAGCCTATTGTTCCTTGCAT	57.490	40.909	0.00	0.00	0.00	3.96
1592	3245	7.921745	GGAGTTCTATAAGTACACCAAAGCTAG	59.078	40.741	0.00	0.00	29.34	3.42
1596	3249	9.583765	GTTAGGAGTTCTATAAGTACACCAAAG	57.416	37.037	0.00	0.00	30.80	2.77
1674	3354	3.303495	CGAGTAGCGAAACGAAATGTGAT	59.697	43.478	0.00	0.00	44.57	3.06
1739	3419	0.933796	GATTGCCTTCTGCGAGTAGC	59.066	55.000	0.00	0.00	45.60	3.58
1740	3420	1.576356	GGATTGCCTTCTGCGAGTAG	58.424	55.000	0.00	0.00	45.60	2.57
1741	3421	0.178068	GGGATTGCCTTCTGCGAGTA	59.822	55.000	0.00	0.00	45.60	2.59
1742	3422	1.078143	GGGATTGCCTTCTGCGAGT	60.078	57.895	0.00	0.00	45.60	4.18
1743	3423	1.821332	GGGGATTGCCTTCTGCGAG	60.821	63.158	0.00	0.00	45.60	5.03
1744	3424	2.135903	TTGGGGATTGCCTTCTGCGA	62.136	55.000	0.00	0.00	45.60	5.10
1745	3425	1.660560	CTTGGGGATTGCCTTCTGCG	61.661	60.000	0.00	0.00	45.60	5.18
1746	3426	0.613012	ACTTGGGGATTGCCTTCTGC	60.613	55.000	0.00	0.00	41.77	4.26
1747	3427	1.272092	TGACTTGGGGATTGCCTTCTG	60.272	52.381	0.00	0.00	0.00	3.02
1748	3428	1.075601	TGACTTGGGGATTGCCTTCT	58.924	50.000	0.00	0.00	0.00	2.85
1749	3429	1.753073	CATGACTTGGGGATTGCCTTC	59.247	52.381	0.00	0.00	0.00	3.46
1750	3430	1.620524	CCATGACTTGGGGATTGCCTT	60.621	52.381	0.00	0.00	42.33	4.35
1751	3431	0.032813	CCATGACTTGGGGATTGCCT	60.033	55.000	0.00	0.00	42.33	4.75
1752	3432	0.033208	TCCATGACTTGGGGATTGCC	60.033	55.000	7.48	0.00	46.45	4.52
1753	3433	1.753073	CTTCCATGACTTGGGGATTGC	59.247	52.381	7.48	0.00	46.45	3.56
1754	3434	3.285484	CTCTTCCATGACTTGGGGATTG	58.715	50.000	7.48	0.00	46.45	2.67
1755	3435	2.243221	CCTCTTCCATGACTTGGGGATT	59.757	50.000	7.48	0.00	46.45	3.01
1997	3735	9.601217	CGGGTAATAATATTTCTTCCTCCATAG	57.399	37.037	0.00	0.00	0.00	2.23
2019	3757	1.120530	ATCGAGGATAACTTGCGGGT	58.879	50.000	0.00	0.00	0.00	5.28
2020	3758	1.068588	TCATCGAGGATAACTTGCGGG	59.931	52.381	0.00	0.00	0.00	6.13
2166	3907	2.040278	AGATGCAGTTGCTAAGGGTTCA	59.960	45.455	5.62	0.00	42.66	3.18
2220	3963	5.416639	TCCAATCATTTGACATGGAAGAGTG	59.583	40.000	12.24	0.00	39.20	3.51
2252	3995	7.851387	TGTTTTATTTCCTGAAACCAAAACC	57.149	32.000	24.12	15.34	41.64	3.27
2677	4434	6.930068	AAACTTACTTACTGGAGAGGCTTA	57.070	37.500	0.00	0.00	0.00	3.09

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.