Multiple sequence alignment - TraesCS6A01G360400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G360400 chr6A 100.000 2352 0 0 1 2352 591427016 591429367 0.000000e+00 4344.0
1 TraesCS6A01G360400 chr6D 89.713 2401 160 44 1 2350 443843590 443845954 0.000000e+00 2985.0
2 TraesCS6A01G360400 chr6B 91.922 978 66 11 820 1789 668245077 668246049 0.000000e+00 1356.0
3 TraesCS6A01G360400 chr6B 86.667 435 39 11 268 694 668241455 668241878 4.580000e-127 464.0
4 TraesCS6A01G360400 chr6B 86.456 443 33 10 1917 2350 668246078 668246502 5.920000e-126 460.0
5 TraesCS6A01G360400 chr6B 92.647 68 5 0 686 753 668244986 668245053 5.350000e-17 99.0
6 TraesCS6A01G360400 chr7A 85.127 316 20 9 1977 2269 559261584 559261895 4.910000e-77 298.0
7 TraesCS6A01G360400 chr7A 81.579 266 30 18 1100 1358 97251558 97251305 3.960000e-48 202.0
8 TraesCS6A01G360400 chr7A 94.231 52 3 0 1913 1964 559261541 559261592 1.940000e-11 80.5
9 TraesCS6A01G360400 chr7A 77.778 126 20 7 21 141 726123192 726123070 1.170000e-08 71.3
10 TraesCS6A01G360400 chr7A 81.111 90 11 5 59 143 726210731 726210643 1.510000e-07 67.6
11 TraesCS6A01G360400 chr7B 95.161 124 6 0 1100 1223 47620197 47620074 1.840000e-46 196.0
12 TraesCS6A01G360400 chr7B 76.245 261 41 14 3 248 57174344 57174598 4.110000e-23 119.0
13 TraesCS6A01G360400 chr7B 95.000 60 2 1 1299 1358 47619975 47619917 2.490000e-15 93.5
14 TraesCS6A01G360400 chr7B 96.875 32 1 0 55 86 708377509 708377478 1.000000e-03 54.7
15 TraesCS6A01G360400 chr7D 94.355 124 7 0 1100 1223 93938186 93938063 8.580000e-45 191.0
16 TraesCS6A01G360400 chr7D 93.333 60 3 1 1292 1351 93937966 93937908 1.160000e-13 87.9
17 TraesCS6A01G360400 chr3D 75.877 228 41 10 38 255 536017082 536017305 1.150000e-18 104.0
18 TraesCS6A01G360400 chr2B 81.343 134 17 6 4 131 680081609 680081740 4.140000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G360400 chr6A 591427016 591429367 2351 False 4344.00 4344 100.000 1 2352 1 chr6A.!!$F1 2351
1 TraesCS6A01G360400 chr6D 443843590 443845954 2364 False 2985.00 2985 89.713 1 2350 1 chr6D.!!$F1 2349
2 TraesCS6A01G360400 chr6B 668241455 668246502 5047 False 594.75 1356 89.423 268 2350 4 chr6B.!!$F1 2082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 3830 1.592081 GCATAGCAAAGAGAGCTGTCG 59.408 52.381 5.05 0.0 43.33 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 4664 0.953471 TGGCACAGCACGGTAACATC 60.953 55.0 0.0 0.0 0.0 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 178 5.410067 ACAAAGAAAAACCATGTGTGTGAG 58.590 37.500 0.00 0.00 0.00 3.51
248 252 2.478890 GGCGAGCCGAGCTACTGTA 61.479 63.158 0.00 0.00 39.88 2.74
287 291 6.743575 AAAAGCTATCGTCTTGCATAAAGT 57.256 33.333 0.00 0.00 37.18 2.66
326 331 2.872245 CGATGAATCCGCCTATGTTGTT 59.128 45.455 0.00 0.00 0.00 2.83
340 345 6.543831 GCCTATGTTGTTAAGATTGGAGTCAT 59.456 38.462 3.98 0.00 30.45 3.06
356 361 2.812011 AGTCATGGTGCTTTAAACGGAC 59.188 45.455 0.00 0.00 0.00 4.79
419 424 2.839486 ATGCAGAGTTCTTTCGTCCA 57.161 45.000 0.00 0.00 0.00 4.02
429 434 6.990349 AGAGTTCTTTCGTCCAATGTAAAGAA 59.010 34.615 0.00 0.00 42.57 2.52
446 451 3.885484 AGAACATTCTTGAACACTGCG 57.115 42.857 0.00 0.00 32.55 5.18
468 475 1.834188 AAGGAAACTAATGGGTGGCG 58.166 50.000 0.00 0.00 42.68 5.69
497 504 9.964253 CGAGCTATCTATGCATATTTTTACAAG 57.036 33.333 6.92 0.00 0.00 3.16
607 618 2.302260 GCCCTCCAAAAGGCTATTCTC 58.698 52.381 0.00 0.00 46.14 2.87
701 3830 1.592081 GCATAGCAAAGAGAGCTGTCG 59.408 52.381 5.05 0.00 43.33 4.35
704 3833 1.789506 AGCAAAGAGAGCTGTCGAAC 58.210 50.000 5.05 0.00 41.61 3.95
738 3867 2.418368 TGAACATATGGGCCACAGTC 57.582 50.000 9.28 2.74 0.00 3.51
760 3889 4.141287 CGGATTTATTCATGGCCCTAACA 58.859 43.478 0.00 0.00 0.00 2.41
779 3908 3.849911 ACATGTGATTGTACCACTCTCG 58.150 45.455 0.00 0.00 35.66 4.04
807 3938 2.225727 GCCCCTTTGTTTCTCTAACGTG 59.774 50.000 0.00 0.00 39.72 4.49
809 3940 2.812011 CCCTTTGTTTCTCTAACGTGGG 59.188 50.000 0.00 0.00 39.72 4.61
829 3960 1.813178 GCCAAGCCCAAAAGAGACTAC 59.187 52.381 0.00 0.00 0.00 2.73
844 3975 8.417780 AAAGAGACTACATCGATCAAAAGATG 57.582 34.615 0.00 6.74 46.95 2.90
916 4047 4.704833 CCCACTGCCCACCACTCG 62.705 72.222 0.00 0.00 0.00 4.18
1023 4163 1.944709 GTACGCTCTCCTCCTCTCTTC 59.055 57.143 0.00 0.00 0.00 2.87
1080 4220 2.513897 CGCTGACCCGATTTCCCC 60.514 66.667 0.00 0.00 0.00 4.81
1088 4228 2.171725 CCGATTTCCCCGTTCGCTC 61.172 63.158 0.00 0.00 0.00 5.03
1092 4232 1.265454 ATTTCCCCGTTCGCTCCTCT 61.265 55.000 0.00 0.00 0.00 3.69
1095 4235 2.756283 CCCGTTCGCTCCTCTCCT 60.756 66.667 0.00 0.00 0.00 3.69
1224 4364 4.525949 GGTAACGGCCGCCTCCTC 62.526 72.222 28.58 9.88 0.00 3.71
1455 4597 5.118990 TGTTATGCAAGCTAGGAAGTGATC 58.881 41.667 0.00 0.00 0.00 2.92
1481 4626 7.052873 CCAGGATGTCTCTGTTATCAATTTCT 58.947 38.462 0.00 0.00 0.00 2.52
1506 4653 4.034048 CGTGTTATGAGGATTGCTTGTACC 59.966 45.833 0.00 0.00 0.00 3.34
1517 4664 1.346395 TGCTTGTACCCTGGTGTACTG 59.654 52.381 19.43 14.88 41.34 2.74
1526 4673 2.418197 CCCTGGTGTACTGATGTTACCG 60.418 54.545 0.00 0.00 35.98 4.02
1557 4704 6.717540 TGCCAAGTAAAGAACCTTTGCTATAA 59.282 34.615 9.75 0.00 0.00 0.98
1558 4705 7.396055 TGCCAAGTAAAGAACCTTTGCTATAAT 59.604 33.333 9.75 0.00 0.00 1.28
1559 4706 7.702348 GCCAAGTAAAGAACCTTTGCTATAATG 59.298 37.037 9.75 5.60 0.00 1.90
1560 4707 8.739972 CCAAGTAAAGAACCTTTGCTATAATGT 58.260 33.333 9.75 0.00 0.00 2.71
1590 4737 5.782047 TGTTAAATTTGTCTCCATGGCTTG 58.218 37.500 6.96 0.00 0.00 4.01
1609 4756 4.558496 GCTTGATTTTGGTTCGAATGGTCA 60.558 41.667 0.00 0.00 0.00 4.02
1623 4770 4.436050 CGAATGGTCAACTGTATTGTGCTC 60.436 45.833 0.00 0.00 0.00 4.26
1630 4777 5.682862 GTCAACTGTATTGTGCTCTTGTTTG 59.317 40.000 0.00 0.00 0.00 2.93
1641 4788 5.028375 GTGCTCTTGTTTGTTTCTGTGTAC 58.972 41.667 0.00 0.00 0.00 2.90
1642 4789 4.095782 TGCTCTTGTTTGTTTCTGTGTACC 59.904 41.667 0.00 0.00 0.00 3.34
1646 4793 5.815740 TCTTGTTTGTTTCTGTGTACCTCTC 59.184 40.000 0.00 0.00 0.00 3.20
1652 4799 6.474140 TGTTTCTGTGTACCTCTCTTTGTA 57.526 37.500 0.00 0.00 0.00 2.41
1709 4856 2.417933 GTGATGAACTGGCTGCTAGTTG 59.582 50.000 31.78 2.59 38.42 3.16
1722 4869 4.742659 GCTGCTAGTTGTGCTATCTAGTTC 59.257 45.833 0.00 0.00 35.14 3.01
1740 4887 9.772973 ATCTAGTTCATGTTTGTGTTAGTTGTA 57.227 29.630 0.00 0.00 0.00 2.41
1743 4890 7.693952 AGTTCATGTTTGTGTTAGTTGTAGTG 58.306 34.615 0.00 0.00 0.00 2.74
1764 4912 7.206981 AGTGTTTTTCTGGAGATATGTTGTG 57.793 36.000 0.00 0.00 0.00 3.33
1809 4957 5.666718 AGAGAGAGAGGGATGTGATTTGATT 59.333 40.000 0.00 0.00 0.00 2.57
1828 4976 7.846644 TTGATTGTTGTTTTCTTGATTTGCT 57.153 28.000 0.00 0.00 0.00 3.91
1829 4977 7.846644 TGATTGTTGTTTTCTTGATTTGCTT 57.153 28.000 0.00 0.00 0.00 3.91
1858 5006 9.490083 ACTAGTAACTAAGGTATTTCATGTCCT 57.510 33.333 0.00 0.00 0.00 3.85
1873 5021 9.739276 ATTTCATGTCCTACTAAGTTTTGATGA 57.261 29.630 0.00 0.00 0.00 2.92
1875 5023 7.331026 TCATGTCCTACTAAGTTTTGATGAGG 58.669 38.462 0.00 0.00 0.00 3.86
1877 5025 5.783360 TGTCCTACTAAGTTTTGATGAGGGA 59.217 40.000 0.00 0.00 0.00 4.20
1882 5034 9.025041 CCTACTAAGTTTTGATGAGGGATTTTT 57.975 33.333 0.00 0.00 0.00 1.94
1899 5051 6.534793 GGGATTTTTATACCAGCATGTGTTTG 59.465 38.462 0.00 0.00 0.00 2.93
1901 5053 7.981225 GGATTTTTATACCAGCATGTGTTTGAT 59.019 33.333 0.00 0.00 0.00 2.57
1915 5067 7.062138 GCATGTGTTTGATGTAGTTGGTTTATG 59.938 37.037 0.00 0.00 0.00 1.90
1970 5124 4.392921 ACATGTAGAGTGTATGGCTGTC 57.607 45.455 0.00 0.00 0.00 3.51
2172 5346 0.826715 GAGTACCTCAGAGCCATGCA 59.173 55.000 0.00 0.00 0.00 3.96
2183 5357 2.770802 AGAGCCATGCATCTGTCTAGTT 59.229 45.455 0.00 0.00 0.00 2.24
2220 5396 1.347050 CCCCTATGAGGAGCTGATGTG 59.653 57.143 0.00 0.00 37.67 3.21
2261 5437 3.130516 GCTTAGGGCTGGTTACCAAAATC 59.869 47.826 5.31 0.00 38.06 2.17
2282 5458 9.883142 AAAATCTGAGCTATAGTATTATGAGCC 57.117 33.333 0.84 0.00 33.50 4.70
2300 5476 7.807977 ATGAGCCAGTAACTTAAATATGGTG 57.192 36.000 0.00 0.00 0.00 4.17
2309 5485 8.545472 AGTAACTTAAATATGGTGTTCCTAGCA 58.455 33.333 0.00 0.00 34.23 3.49
2329 5505 0.532573 TCAGAGAATCGCCACAGGTC 59.467 55.000 0.00 0.00 42.67 3.85
2332 5508 0.179097 GAGAATCGCCACAGGTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2333 5509 1.153349 GAATCGCCACAGGTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
2342 5518 1.070134 CACAGGTCCTCCGAGTTTTGA 59.930 52.381 0.00 0.00 39.05 2.69
2350 5526 4.938226 GTCCTCCGAGTTTTGATTTCTGAT 59.062 41.667 0.00 0.00 0.00 2.90
2351 5527 5.064071 GTCCTCCGAGTTTTGATTTCTGATC 59.936 44.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
148 151 6.809196 TCACACACATGGTTTTTCTTTGTAAC 59.191 34.615 0.00 0.00 0.00 2.50
150 153 6.405286 CCTCACACACATGGTTTTTCTTTGTA 60.405 38.462 0.00 0.00 0.00 2.41
157 160 3.360867 TGACCTCACACACATGGTTTTT 58.639 40.909 0.00 0.00 32.30 1.94
165 169 0.758123 TCATGCTGACCTCACACACA 59.242 50.000 0.00 0.00 0.00 3.72
174 178 2.300967 TGGGTCCCTCATGCTGACC 61.301 63.158 10.00 15.71 46.31 4.02
184 188 2.427889 CCTAGTATCCATGTGGGTCCCT 60.428 54.545 10.00 0.00 38.11 4.20
185 189 1.978580 CCTAGTATCCATGTGGGTCCC 59.021 57.143 0.00 0.00 38.11 4.46
266 270 5.419542 TCACTTTATGCAAGACGATAGCTT 58.580 37.500 0.00 0.00 36.06 3.74
272 276 4.783764 TCTCTCACTTTATGCAAGACGA 57.216 40.909 0.00 0.00 36.21 4.20
273 277 5.174761 GCTATCTCTCACTTTATGCAAGACG 59.825 44.000 0.00 0.00 36.21 4.18
287 291 3.606662 GGGCGCGGCTATCTCTCA 61.607 66.667 32.30 0.00 0.00 3.27
326 331 4.574674 AAGCACCATGACTCCAATCTTA 57.425 40.909 0.00 0.00 0.00 2.10
340 345 1.331138 CGTTGTCCGTTTAAAGCACCA 59.669 47.619 0.00 0.00 0.00 4.17
356 361 9.663904 CCTAATTATCATGGATTTGTTACGTTG 57.336 33.333 0.00 0.00 0.00 4.10
395 400 5.105513 TGGACGAAAGAACTCTGCATACATA 60.106 40.000 0.00 0.00 0.00 2.29
429 434 4.498009 CCTTTTCGCAGTGTTCAAGAATGT 60.498 41.667 0.00 0.00 0.00 2.71
442 447 3.506067 ACCCATTAGTTTCCTTTTCGCAG 59.494 43.478 0.00 0.00 0.00 5.18
446 451 3.366985 CGCCACCCATTAGTTTCCTTTTC 60.367 47.826 0.00 0.00 0.00 2.29
468 475 6.414408 AAAATATGCATAGATAGCTCGTGC 57.586 37.500 12.79 10.39 37.97 5.34
570 581 7.401060 TGGAGGGCTTTATTAATTGGATAGA 57.599 36.000 0.00 0.00 0.00 1.98
602 613 9.571816 ACTCTCAAAAGAATCTTTTCTGAGAAT 57.428 29.630 31.19 23.31 41.42 2.40
738 3867 4.141287 TGTTAGGGCCATGAATAAATCCG 58.859 43.478 6.18 0.00 0.00 4.18
779 3908 0.318441 GAAACAAAGGGGCTCTTGGC 59.682 55.000 0.00 0.00 35.55 4.52
809 3940 1.813178 GTAGTCTCTTTTGGGCTTGGC 59.187 52.381 0.00 0.00 0.00 4.52
820 3951 7.776107 TCATCTTTTGATCGATGTAGTCTCTT 58.224 34.615 0.54 0.00 38.47 2.85
822 3953 6.640499 CCTCATCTTTTGATCGATGTAGTCTC 59.360 42.308 0.54 0.00 38.47 3.36
829 3960 3.474600 AGGCCTCATCTTTTGATCGATG 58.525 45.455 0.54 2.80 36.97 3.84
916 4047 0.173708 CCTAGGTCCGTGAAGTGCTC 59.826 60.000 0.00 0.00 0.00 4.26
1023 4163 2.286425 AGGGTGGGACTCCATGGG 60.286 66.667 13.02 5.22 46.09 4.00
1080 4220 1.720694 GAGGAGGAGAGGAGCGAACG 61.721 65.000 0.00 0.00 0.00 3.95
1088 4228 3.535962 GGCTGCGAGGAGGAGAGG 61.536 72.222 0.00 0.00 41.23 3.69
1228 4368 1.199615 GAAGGGAAGAGAGTGGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
1230 4370 0.408309 TCGAAGGGAAGAGAGTGGGA 59.592 55.000 0.00 0.00 0.00 4.37
1231 4371 1.410882 GATCGAAGGGAAGAGAGTGGG 59.589 57.143 0.00 0.00 0.00 4.61
1234 4374 2.383855 CTGGATCGAAGGGAAGAGAGT 58.616 52.381 0.00 0.00 0.00 3.24
1235 4375 1.068434 GCTGGATCGAAGGGAAGAGAG 59.932 57.143 0.00 0.00 0.00 3.20
1236 4376 1.115467 GCTGGATCGAAGGGAAGAGA 58.885 55.000 0.00 0.00 0.00 3.10
1238 4378 1.338136 GGGCTGGATCGAAGGGAAGA 61.338 60.000 0.00 0.00 0.00 2.87
1240 4380 1.615124 TGGGCTGGATCGAAGGGAA 60.615 57.895 0.00 0.00 0.00 3.97
1241 4381 2.040442 TGGGCTGGATCGAAGGGA 59.960 61.111 0.00 0.00 0.00 4.20
1269 4410 3.509388 AACGATTGGTCGGTCAGAC 57.491 52.632 2.76 0.00 46.84 3.51
1455 4597 4.760530 TTGATAACAGAGACATCCTGGG 57.239 45.455 0.00 0.00 36.03 4.45
1481 4626 4.323417 ACAAGCAATCCTCATAACACGAA 58.677 39.130 0.00 0.00 0.00 3.85
1506 4653 2.232941 ACGGTAACATCAGTACACCAGG 59.767 50.000 0.00 0.00 34.30 4.45
1517 4664 0.953471 TGGCACAGCACGGTAACATC 60.953 55.000 0.00 0.00 0.00 3.06
1526 4673 2.287608 GGTTCTTTACTTGGCACAGCAC 60.288 50.000 0.00 0.00 42.39 4.40
1557 4704 6.015434 GGAGACAAATTTAACAAGGGTGACAT 60.015 38.462 0.00 0.00 0.00 3.06
1558 4705 5.300792 GGAGACAAATTTAACAAGGGTGACA 59.699 40.000 0.00 0.00 0.00 3.58
1559 4706 5.300792 TGGAGACAAATTTAACAAGGGTGAC 59.699 40.000 0.00 0.00 37.44 3.67
1560 4707 5.450453 TGGAGACAAATTTAACAAGGGTGA 58.550 37.500 0.00 0.00 37.44 4.02
1590 4737 4.917415 CAGTTGACCATTCGAACCAAAATC 59.083 41.667 0.00 0.00 0.00 2.17
1609 4756 5.835113 ACAAACAAGAGCACAATACAGTT 57.165 34.783 0.00 0.00 0.00 3.16
1623 4770 5.817816 AGAGAGGTACACAGAAACAAACAAG 59.182 40.000 0.00 0.00 0.00 3.16
1630 4777 7.441458 ACAATACAAAGAGAGGTACACAGAAAC 59.559 37.037 0.00 0.00 0.00 2.78
1681 4828 3.441572 GCAGCCAGTTCATCACAATTACT 59.558 43.478 0.00 0.00 0.00 2.24
1690 4837 2.417933 CACAACTAGCAGCCAGTTCATC 59.582 50.000 2.86 0.00 33.99 2.92
1691 4838 2.430465 CACAACTAGCAGCCAGTTCAT 58.570 47.619 2.86 0.00 33.99 2.57
1709 4856 6.727824 ACACAAACATGAACTAGATAGCAC 57.272 37.500 0.00 0.00 0.00 4.40
1722 4869 8.682128 AAAACACTACAACTAACACAAACATG 57.318 30.769 0.00 0.00 0.00 3.21
1740 4887 6.207417 CCACAACATATCTCCAGAAAAACACT 59.793 38.462 0.00 0.00 0.00 3.55
1743 4890 5.048083 TGCCACAACATATCTCCAGAAAAAC 60.048 40.000 0.00 0.00 0.00 2.43
1764 4912 3.622630 TCTCTCTAGTAAGTGGTCTGCC 58.377 50.000 0.00 0.00 0.00 4.85
1777 4925 4.594920 ACATCCCTCTCTCTCTCTCTCTAG 59.405 50.000 0.00 0.00 0.00 2.43
1809 4957 8.770438 AGTTAAAGCAAATCAAGAAAACAACA 57.230 26.923 0.00 0.00 0.00 3.33
1839 4987 9.490083 ACTTAGTAGGACATGAAATACCTTAGT 57.510 33.333 0.00 0.79 34.81 2.24
1867 5015 6.430864 TGCTGGTATAAAAATCCCTCATCAA 58.569 36.000 0.00 0.00 0.00 2.57
1871 5019 5.593909 CACATGCTGGTATAAAAATCCCTCA 59.406 40.000 0.00 0.00 0.00 3.86
1872 5020 5.594317 ACACATGCTGGTATAAAAATCCCTC 59.406 40.000 0.00 0.00 0.00 4.30
1873 5021 5.518865 ACACATGCTGGTATAAAAATCCCT 58.481 37.500 0.00 0.00 0.00 4.20
1875 5023 7.319646 TCAAACACATGCTGGTATAAAAATCC 58.680 34.615 0.00 0.00 0.00 3.01
1877 5025 8.313292 ACATCAAACACATGCTGGTATAAAAAT 58.687 29.630 0.00 0.00 0.00 1.82
1882 5034 6.649155 ACTACATCAAACACATGCTGGTATA 58.351 36.000 0.00 0.00 0.00 1.47
1883 5035 5.500234 ACTACATCAAACACATGCTGGTAT 58.500 37.500 0.00 0.00 0.00 2.73
1899 5051 9.341899 CTGCTTAAAACATAAACCAACTACATC 57.658 33.333 0.00 0.00 0.00 3.06
1901 5053 7.255660 CCCTGCTTAAAACATAAACCAACTACA 60.256 37.037 0.00 0.00 0.00 2.74
1915 5067 4.142026 ACAAAACCTGACCCTGCTTAAAAC 60.142 41.667 0.00 0.00 0.00 2.43
1970 5124 6.765036 AGCATGGATAAACTATCTGTGAACTG 59.235 38.462 0.00 0.00 35.52 3.16
2089 5243 8.846943 ATCAGTATGTCAATTTGTACAAGTCA 57.153 30.769 8.56 1.13 37.40 3.41
2172 5346 7.534723 TGTAGTTTGTACCAACTAGACAGAT 57.465 36.000 17.40 0.00 32.71 2.90
2183 5357 6.215841 TCATAGGGGAAATGTAGTTTGTACCA 59.784 38.462 0.00 0.00 0.00 3.25
2244 5420 2.755103 CTCAGATTTTGGTAACCAGCCC 59.245 50.000 0.00 0.00 33.81 5.19
2261 5437 7.403312 ACTGGCTCATAATACTATAGCTCAG 57.597 40.000 0.00 0.00 37.43 3.35
2282 5458 8.827677 GCTAGGAACACCATATTTAAGTTACTG 58.172 37.037 0.00 0.00 34.45 2.74
2296 5472 2.820178 TCTCTGATGCTAGGAACACCA 58.180 47.619 0.00 0.00 0.00 4.17
2300 5476 3.056304 GCGATTCTCTGATGCTAGGAAC 58.944 50.000 0.00 0.00 0.00 3.62
2309 5485 1.137872 GACCTGTGGCGATTCTCTGAT 59.862 52.381 0.00 0.00 0.00 2.90
2329 5505 5.476752 GATCAGAAATCAAAACTCGGAGG 57.523 43.478 10.23 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.