Multiple sequence alignment - TraesCS6A01G360300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G360300 chr6A 100.000 2612 0 0 1 2612 591382199 591379588 0.000000e+00 4824.0
1 TraesCS6A01G360300 chr6A 98.171 164 3 0 2449 2612 83044649 83044486 1.180000e-73 287.0
2 TraesCS6A01G360300 chr6A 89.320 103 10 1 611 712 591406719 591406617 7.590000e-26 128.0
3 TraesCS6A01G360300 chr6A 91.667 60 5 0 277 336 454654058 454653999 1.670000e-12 84.2
4 TraesCS6A01G360300 chr6D 90.898 1681 83 32 559 2185 443741801 443740137 0.000000e+00 2193.0
5 TraesCS6A01G360300 chr6D 85.934 455 27 22 998 1420 443754011 443753562 3.960000e-123 451.0
6 TraesCS6A01G360300 chr6D 89.083 229 4 8 60 278 443742330 443742113 5.540000e-67 265.0
7 TraesCS6A01G360300 chr6D 90.370 135 12 1 2296 2430 443740003 443739870 2.670000e-40 176.0
8 TraesCS6A01G360300 chr6D 90.991 111 7 3 611 720 443754367 443754259 2.090000e-31 147.0
9 TraesCS6A01G360300 chr6D 87.629 97 6 2 1521 1611 443753516 443753420 9.880000e-20 108.0
10 TraesCS6A01G360300 chr6D 92.188 64 2 2 1 61 443742430 443742367 1.290000e-13 87.9
11 TraesCS6A01G360300 chr6B 87.492 1503 72 53 332 1763 668030719 668029262 0.000000e+00 1628.0
12 TraesCS6A01G360300 chr6B 83.178 321 31 11 1881 2195 668029218 668028915 3.310000e-69 272.0
13 TraesCS6A01G360300 chr6B 86.638 232 10 12 59 278 668030940 668030718 1.210000e-58 237.0
14 TraesCS6A01G360300 chr6B 95.420 131 6 0 2290 2420 668028779 668028649 2.630000e-50 209.0
15 TraesCS6A01G360300 chr6B 77.907 344 25 22 998 1313 668136660 668136340 1.610000e-37 167.0
16 TraesCS6A01G360300 chr6B 92.473 93 6 1 2192 2284 668028788 668028879 5.870000e-27 132.0
17 TraesCS6A01G360300 chr6B 91.935 62 2 2 1 59 668031032 668030971 1.670000e-12 84.2
18 TraesCS6A01G360300 chr2B 94.479 163 9 0 2450 2612 5525210 5525372 4.320000e-63 252.0
19 TraesCS6A01G360300 chr2B 89.764 127 8 5 1179 1303 726545997 726546120 9.680000e-35 158.0
20 TraesCS6A01G360300 chr2B 85.600 125 11 6 1183 1303 726136040 726136161 9.820000e-25 124.0
21 TraesCS6A01G360300 chr2B 88.462 78 9 0 1012 1089 726135854 726135931 7.700000e-16 95.3
22 TraesCS6A01G360300 chr2A 92.308 169 13 0 2444 2612 243527672 243527840 9.340000e-60 241.0
23 TraesCS6A01G360300 chr2A 90.244 123 10 2 1191 1312 732580523 732580644 2.690000e-35 159.0
24 TraesCS6A01G360300 chr2A 86.842 114 13 2 1191 1303 731379623 731379735 2.730000e-25 126.0
25 TraesCS6A01G360300 chr1A 92.683 164 12 0 2449 2612 487472496 487472333 1.210000e-58 237.0
26 TraesCS6A01G360300 chr7A 74.960 627 100 39 1000 1604 97266936 97267527 4.350000e-58 235.0
27 TraesCS6A01G360300 chr7D 74.921 634 96 44 999 1614 93949387 93948799 5.620000e-57 231.0
28 TraesCS6A01G360300 chr7D 91.667 168 13 1 2446 2612 346568639 346568806 5.620000e-57 231.0
29 TraesCS6A01G360300 chr7D 90.751 173 14 2 2441 2612 5832959 5833130 2.020000e-56 230.0
30 TraesCS6A01G360300 chr7D 95.556 90 4 0 1000 1089 94005549 94005638 7.530000e-31 145.0
31 TraesCS6A01G360300 chr7B 74.396 621 97 44 999 1604 47737265 47737838 2.630000e-50 209.0
32 TraesCS6A01G360300 chr5B 93.056 144 9 1 2469 2612 13710299 13710157 2.630000e-50 209.0
33 TraesCS6A01G360300 chr5B 92.982 57 4 0 277 333 69548106 69548050 1.670000e-12 84.2
34 TraesCS6A01G360300 chr2D 89.130 138 10 5 1179 1314 598712890 598713024 1.610000e-37 167.0
35 TraesCS6A01G360300 chr3D 89.333 75 6 2 262 335 435451329 435451256 2.770000e-15 93.5
36 TraesCS6A01G360300 chr4A 92.982 57 4 0 277 333 614706364 614706420 1.670000e-12 84.2
37 TraesCS6A01G360300 chr1D 96.000 50 0 2 273 322 34585581 34585628 2.150000e-11 80.5
38 TraesCS6A01G360300 chr5D 91.228 57 5 0 277 333 61066421 61066477 7.750000e-11 78.7
39 TraesCS6A01G360300 chr5D 87.302 63 7 1 271 333 441882175 441882236 1.300000e-08 71.3
40 TraesCS6A01G360300 chr5A 91.071 56 3 2 267 322 286680775 286680722 1.000000e-09 75.0
41 TraesCS6A01G360300 chr3B 84.507 71 9 2 276 346 630499925 630499857 4.660000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G360300 chr6A 591379588 591382199 2611 True 4824.000000 4824 100.000000 1 2612 1 chr6A.!!$R3 2611
1 TraesCS6A01G360300 chr6D 443739870 443742430 2560 True 680.475000 2193 90.634750 1 2430 4 chr6D.!!$R1 2429
2 TraesCS6A01G360300 chr6D 443753420 443754367 947 True 235.333333 451 88.184667 611 1611 3 chr6D.!!$R2 1000
3 TraesCS6A01G360300 chr6B 668028649 668031032 2383 True 486.040000 1628 88.932600 1 2420 5 chr6B.!!$R2 2419
4 TraesCS6A01G360300 chr7A 97266936 97267527 591 False 235.000000 235 74.960000 1000 1604 1 chr7A.!!$F1 604
5 TraesCS6A01G360300 chr7D 93948799 93949387 588 True 231.000000 231 74.921000 999 1614 1 chr7D.!!$R1 615
6 TraesCS6A01G360300 chr7B 47737265 47737838 573 False 209.000000 209 74.396000 999 1604 1 chr7B.!!$F1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 1091 0.250124 TTTATACCTCCCGCGCCATG 60.25 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2288 2814 0.03213 CCCACGATCTGATGGTACCG 59.968 60.0 7.57 0.0 33.8 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.624410 TGTCATGTGATGCACTATTCAGC 59.376 43.478 0.00 0.00 35.11 4.26
34 35 2.011947 TGTGATGCACTATTCAGCAGC 58.988 47.619 0.00 0.00 46.53 5.25
76 118 2.188829 CGGATCCGGTTGCATGCAT 61.189 57.895 26.95 4.78 35.56 3.96
115 163 4.980805 TGTCCGGCCTGCACGTTC 62.981 66.667 0.00 0.00 0.00 3.95
160 208 0.255890 ACGCCATGCCCAGTCTTTAT 59.744 50.000 0.00 0.00 0.00 1.40
161 209 1.340991 ACGCCATGCCCAGTCTTTATT 60.341 47.619 0.00 0.00 0.00 1.40
162 210 2.092646 ACGCCATGCCCAGTCTTTATTA 60.093 45.455 0.00 0.00 0.00 0.98
163 211 2.549754 CGCCATGCCCAGTCTTTATTAG 59.450 50.000 0.00 0.00 0.00 1.73
164 212 2.294512 GCCATGCCCAGTCTTTATTAGC 59.705 50.000 0.00 0.00 0.00 3.09
165 213 3.554934 CCATGCCCAGTCTTTATTAGCA 58.445 45.455 0.00 0.00 0.00 3.49
166 214 3.567164 CCATGCCCAGTCTTTATTAGCAG 59.433 47.826 0.00 0.00 31.43 4.24
167 215 2.643551 TGCCCAGTCTTTATTAGCAGC 58.356 47.619 0.00 0.00 0.00 5.25
168 216 2.026356 TGCCCAGTCTTTATTAGCAGCA 60.026 45.455 0.00 0.00 0.00 4.41
285 340 9.978336 AGTATATGTCTATAACTTACTCCCTCC 57.022 37.037 0.00 0.00 0.00 4.30
286 341 9.978336 GTATATGTCTATAACTTACTCCCTCCT 57.022 37.037 0.00 0.00 0.00 3.69
290 345 9.725206 ATGTCTATAACTTACTCCCTCCTTAAA 57.275 33.333 0.00 0.00 0.00 1.52
291 346 8.975295 TGTCTATAACTTACTCCCTCCTTAAAC 58.025 37.037 0.00 0.00 0.00 2.01
292 347 9.199645 GTCTATAACTTACTCCCTCCTTAAACT 57.800 37.037 0.00 0.00 0.00 2.66
296 351 7.622502 AACTTACTCCCTCCTTAAACTAACA 57.377 36.000 0.00 0.00 0.00 2.41
297 352 7.809880 ACTTACTCCCTCCTTAAACTAACAT 57.190 36.000 0.00 0.00 0.00 2.71
298 353 8.906238 ACTTACTCCCTCCTTAAACTAACATA 57.094 34.615 0.00 0.00 0.00 2.29
299 354 9.330220 ACTTACTCCCTCCTTAAACTAACATAA 57.670 33.333 0.00 0.00 0.00 1.90
300 355 9.819267 CTTACTCCCTCCTTAAACTAACATAAG 57.181 37.037 0.00 0.00 0.00 1.73
301 356 9.551339 TTACTCCCTCCTTAAACTAACATAAGA 57.449 33.333 0.00 0.00 32.10 2.10
302 357 8.080363 ACTCCCTCCTTAAACTAACATAAGAG 57.920 38.462 0.00 0.00 32.10 2.85
303 358 6.885922 TCCCTCCTTAAACTAACATAAGAGC 58.114 40.000 0.00 0.00 32.10 4.09
304 359 5.753921 CCCTCCTTAAACTAACATAAGAGCG 59.246 44.000 0.00 0.00 32.10 5.03
305 360 6.338937 CCTCCTTAAACTAACATAAGAGCGT 58.661 40.000 0.00 0.00 32.10 5.07
306 361 6.817140 CCTCCTTAAACTAACATAAGAGCGTT 59.183 38.462 0.00 0.00 32.10 4.84
307 362 7.333672 CCTCCTTAAACTAACATAAGAGCGTTT 59.666 37.037 0.00 0.00 32.10 3.60
308 363 9.362539 CTCCTTAAACTAACATAAGAGCGTTTA 57.637 33.333 0.00 0.00 32.10 2.01
309 364 9.362539 TCCTTAAACTAACATAAGAGCGTTTAG 57.637 33.333 0.00 0.00 32.10 1.85
310 365 9.362539 CCTTAAACTAACATAAGAGCGTTTAGA 57.637 33.333 0.00 0.00 32.10 2.10
313 368 8.997621 AAACTAACATAAGAGCGTTTAGATCA 57.002 30.769 0.00 0.00 37.82 2.92
314 369 7.988904 ACTAACATAAGAGCGTTTAGATCAC 57.011 36.000 0.00 0.00 37.82 3.06
315 370 7.773149 ACTAACATAAGAGCGTTTAGATCACT 58.227 34.615 0.00 0.00 37.82 3.41
316 371 8.900781 ACTAACATAAGAGCGTTTAGATCACTA 58.099 33.333 0.00 0.00 37.82 2.74
317 372 7.988904 AACATAAGAGCGTTTAGATCACTAC 57.011 36.000 0.00 0.00 37.82 2.73
318 373 7.336161 ACATAAGAGCGTTTAGATCACTACT 57.664 36.000 0.00 0.00 37.82 2.57
319 374 7.773149 ACATAAGAGCGTTTAGATCACTACTT 58.227 34.615 0.00 0.00 37.82 2.24
320 375 8.251721 ACATAAGAGCGTTTAGATCACTACTTT 58.748 33.333 0.00 0.00 37.82 2.66
321 376 9.731819 CATAAGAGCGTTTAGATCACTACTTTA 57.268 33.333 0.00 0.00 37.82 1.85
322 377 9.733219 ATAAGAGCGTTTAGATCACTACTTTAC 57.267 33.333 0.00 0.00 37.82 2.01
323 378 7.154435 AGAGCGTTTAGATCACTACTTTACA 57.846 36.000 0.00 0.00 37.82 2.41
324 379 7.251994 AGAGCGTTTAGATCACTACTTTACAG 58.748 38.462 0.00 0.00 37.82 2.74
325 380 7.120873 AGAGCGTTTAGATCACTACTTTACAGA 59.879 37.037 0.00 0.00 37.82 3.41
326 381 7.251994 AGCGTTTAGATCACTACTTTACAGAG 58.748 38.462 0.00 0.00 0.00 3.35
327 382 6.472808 GCGTTTAGATCACTACTTTACAGAGG 59.527 42.308 0.00 0.00 0.00 3.69
328 383 6.973474 CGTTTAGATCACTACTTTACAGAGGG 59.027 42.308 0.00 0.00 0.00 4.30
329 384 7.148120 CGTTTAGATCACTACTTTACAGAGGGA 60.148 40.741 0.00 0.00 0.00 4.20
330 385 7.883391 TTAGATCACTACTTTACAGAGGGAG 57.117 40.000 0.00 0.00 0.00 4.30
397 457 0.886490 AGTCGCCTTGGCTCAACTTG 60.886 55.000 10.12 0.00 0.00 3.16
404 617 2.224042 CCTTGGCTCAACTTGTTTTCCC 60.224 50.000 0.00 0.00 0.00 3.97
441 654 3.785486 AGTGCAAAACTGAGGAAAAAGC 58.215 40.909 0.00 0.00 37.88 3.51
459 672 6.405278 AAAAGCTGTGCCAAGTTATAGTTT 57.595 33.333 0.00 0.00 0.00 2.66
462 675 3.506067 GCTGTGCCAAGTTATAGTTTGGT 59.494 43.478 15.00 0.00 44.52 3.67
463 676 4.615912 GCTGTGCCAAGTTATAGTTTGGTG 60.616 45.833 15.00 7.63 44.52 4.17
465 678 3.192633 GTGCCAAGTTATAGTTTGGTGGG 59.807 47.826 15.00 0.00 44.52 4.61
466 679 2.758423 GCCAAGTTATAGTTTGGTGGGG 59.242 50.000 15.00 0.00 44.52 4.96
467 680 3.361786 CCAAGTTATAGTTTGGTGGGGG 58.638 50.000 8.46 0.00 39.18 5.40
492 705 3.967987 GGGGGTAGACATCTCTTGTATGT 59.032 47.826 0.00 0.00 39.18 2.29
493 706 5.145564 GGGGGTAGACATCTCTTGTATGTA 58.854 45.833 0.00 0.00 39.18 2.29
519 732 6.756299 TGTATGTCAAAATTGCATGCTAGA 57.244 33.333 20.33 5.31 32.84 2.43
537 753 7.210718 TGCTAGAATCATTTGGCATATGAAG 57.789 36.000 21.60 15.75 35.77 3.02
543 759 8.195436 AGAATCATTTGGCATATGAAGTTTCAG 58.805 33.333 21.60 0.00 41.08 3.02
592 830 3.366985 GGAACAAAAGGATAACCCAAGCG 60.367 47.826 0.00 0.00 37.41 4.68
593 831 3.149005 ACAAAAGGATAACCCAAGCGA 57.851 42.857 0.00 0.00 37.41 4.93
601 839 1.164411 TAACCCAAGCGAACATGCAG 58.836 50.000 0.00 0.00 37.31 4.41
602 840 0.537143 AACCCAAGCGAACATGCAGA 60.537 50.000 0.00 0.00 37.31 4.26
790 1069 1.135112 CCGCACTTTAATTTCCCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
810 1089 1.274167 CTATTTATACCTCCCGCGCCA 59.726 52.381 0.00 0.00 0.00 5.69
811 1090 0.690762 ATTTATACCTCCCGCGCCAT 59.309 50.000 0.00 0.00 0.00 4.40
812 1091 0.250124 TTTATACCTCCCGCGCCATG 60.250 55.000 0.00 0.00 0.00 3.66
864 1145 2.284921 CACTCCCCTCCTGCTCCA 60.285 66.667 0.00 0.00 0.00 3.86
873 1154 2.438075 CCTGCTCCAGCCAAGCTC 60.438 66.667 0.00 0.00 40.50 4.09
919 1233 1.789078 GCACGGCAGCATAATCAGGG 61.789 60.000 0.00 0.00 0.00 4.45
1095 1420 1.682394 CCTCTCCTGTGCGTACCTACT 60.682 57.143 0.00 0.00 0.00 2.57
1184 1534 3.549467 CACGGTGATGACGGTGTG 58.451 61.111 13.61 1.37 44.43 3.82
1185 1535 2.027073 CACGGTGATGACGGTGTGG 61.027 63.158 13.61 0.00 44.43 4.17
1186 1536 3.118454 CGGTGATGACGGTGTGGC 61.118 66.667 0.00 0.00 0.00 5.01
1218 1596 2.831770 CGGATATGGCTGGGCACT 59.168 61.111 0.00 0.00 0.00 4.40
1668 2177 0.535797 TCTGCATGCTCCTCTCTGTG 59.464 55.000 20.33 0.00 0.00 3.66
1770 2279 3.862267 GTCAGTGAGCTATGTGATGTGAC 59.138 47.826 0.00 0.00 0.00 3.67
1793 2302 2.879646 ACCGGAGAAGAGCTCGTATTAG 59.120 50.000 9.46 0.74 44.91 1.73
1795 2304 3.315749 CCGGAGAAGAGCTCGTATTAGTT 59.684 47.826 8.37 0.00 44.91 2.24
1796 2305 4.529446 CGGAGAAGAGCTCGTATTAGTTC 58.471 47.826 8.37 4.81 44.91 3.01
1797 2306 4.529446 GGAGAAGAGCTCGTATTAGTTCG 58.471 47.826 8.37 0.00 44.91 3.95
1798 2307 4.529446 GAGAAGAGCTCGTATTAGTTCGG 58.471 47.826 8.37 0.00 33.17 4.30
1831 2343 2.543012 TCTACGCTAGTGATCGTACAGC 59.457 50.000 10.99 0.00 39.79 4.40
1927 2439 6.090898 CGGTAACAAGTTTAATCCTCTCTGTG 59.909 42.308 0.00 0.00 0.00 3.66
1962 2477 3.767806 TGCTCGGCTCAGCTCTGG 61.768 66.667 0.00 0.00 40.39 3.86
1988 2503 4.579454 AGTCTACGTGCTTTGTGTAGAA 57.421 40.909 0.00 0.00 44.32 2.10
1991 2506 5.634020 AGTCTACGTGCTTTGTGTAGAATTC 59.366 40.000 0.00 0.00 44.32 2.17
1992 2507 5.634020 GTCTACGTGCTTTGTGTAGAATTCT 59.366 40.000 13.56 13.56 44.32 2.40
2020 2541 2.507452 CCATCTGATCTGCCGCCA 59.493 61.111 0.00 0.00 0.00 5.69
2081 2607 2.139917 ACGTGCGATGCTTAACTGAAA 58.860 42.857 0.00 0.00 0.00 2.69
2085 2611 2.411748 TGCGATGCTTAACTGAAACGAG 59.588 45.455 0.00 0.00 0.00 4.18
2106 2632 0.304705 CCGATCAATGGCGTGCTAAC 59.695 55.000 0.00 0.00 0.00 2.34
2107 2633 1.290203 CGATCAATGGCGTGCTAACT 58.710 50.000 0.00 0.00 0.00 2.24
2108 2634 1.004610 CGATCAATGGCGTGCTAACTG 60.005 52.381 0.00 0.00 0.00 3.16
2109 2635 0.734889 ATCAATGGCGTGCTAACTGC 59.265 50.000 0.00 0.00 43.25 4.40
2121 2647 3.282831 GCTAACTGCAACGAAACCAAT 57.717 42.857 0.00 0.00 42.31 3.16
2140 2666 1.672030 CAATCAGTGGCGTGCTCCA 60.672 57.895 0.00 0.00 0.00 3.86
2155 2681 1.153168 TCCAGGATTTGCTAGCCGC 60.153 57.895 13.29 0.00 39.77 6.53
2156 2682 2.537560 CCAGGATTTGCTAGCCGCG 61.538 63.158 13.29 0.00 43.27 6.46
2157 2683 1.815421 CAGGATTTGCTAGCCGCGT 60.815 57.895 13.29 0.00 43.27 6.01
2158 2684 0.529773 CAGGATTTGCTAGCCGCGTA 60.530 55.000 13.29 0.00 43.27 4.42
2159 2685 0.249489 AGGATTTGCTAGCCGCGTAG 60.249 55.000 13.29 1.83 43.27 3.51
2169 2695 3.611549 GCTAGCCGCGTAGGATAATAAAC 59.388 47.826 2.29 0.00 40.89 2.01
2174 2700 3.554337 CCGCGTAGGATAATAAACCAGCT 60.554 47.826 4.92 0.00 45.00 4.24
2185 2711 3.649277 AACCAGCTAGACGCGCCTG 62.649 63.158 5.73 1.36 45.59 4.85
2188 2714 3.382832 AGCTAGACGCGCCTGGTT 61.383 61.111 5.73 0.00 45.59 3.67
2195 2721 1.970917 GACGCGCCTGGTTGATGAAG 61.971 60.000 5.73 0.00 0.00 3.02
2196 2722 1.741401 CGCGCCTGGTTGATGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
2197 2723 1.699656 CGCGCCTGGTTGATGAAGAG 61.700 60.000 0.00 0.00 0.00 2.85
2198 2724 1.986575 GCGCCTGGTTGATGAAGAGC 61.987 60.000 0.00 0.00 0.00 4.09
2200 2726 0.322816 GCCTGGTTGATGAAGAGCCA 60.323 55.000 0.00 0.00 0.00 4.75
2201 2727 1.887956 GCCTGGTTGATGAAGAGCCAA 60.888 52.381 0.00 0.00 0.00 4.52
2203 2729 1.466167 CTGGTTGATGAAGAGCCAACG 59.534 52.381 0.00 0.00 40.58 4.10
2204 2730 1.071542 TGGTTGATGAAGAGCCAACGA 59.928 47.619 0.00 0.00 40.58 3.85
2205 2731 1.464997 GGTTGATGAAGAGCCAACGAC 59.535 52.381 0.00 0.00 40.58 4.34
2206 2732 2.143122 GTTGATGAAGAGCCAACGACA 58.857 47.619 0.00 0.00 32.19 4.35
2207 2733 1.795768 TGATGAAGAGCCAACGACAC 58.204 50.000 0.00 0.00 0.00 3.67
2209 2735 1.728971 GATGAAGAGCCAACGACACAG 59.271 52.381 0.00 0.00 0.00 3.66
2210 2736 0.249868 TGAAGAGCCAACGACACAGG 60.250 55.000 0.00 0.00 0.00 4.00
2211 2737 0.951040 GAAGAGCCAACGACACAGGG 60.951 60.000 0.00 0.00 0.00 4.45
2212 2738 1.407656 AAGAGCCAACGACACAGGGA 61.408 55.000 0.00 0.00 0.00 4.20
2216 2742 0.958822 GCCAACGACACAGGGAAATT 59.041 50.000 0.00 0.00 0.00 1.82
2218 2744 1.196808 CCAACGACACAGGGAAATTCG 59.803 52.381 0.00 0.00 35.80 3.34
2219 2745 1.196808 CAACGACACAGGGAAATTCGG 59.803 52.381 0.00 0.00 33.97 4.30
2221 2747 1.076332 CGACACAGGGAAATTCGGTC 58.924 55.000 0.00 0.00 0.00 4.79
2223 2749 0.768622 ACACAGGGAAATTCGGTCCA 59.231 50.000 0.00 0.00 36.83 4.02
2224 2750 1.354368 ACACAGGGAAATTCGGTCCAT 59.646 47.619 0.00 0.00 36.83 3.41
2226 2752 1.392589 CAGGGAAATTCGGTCCATGG 58.607 55.000 4.97 4.97 42.06 3.66
2227 2753 0.395724 AGGGAAATTCGGTCCATGGC 60.396 55.000 6.96 1.78 36.83 4.40
2228 2754 1.391933 GGGAAATTCGGTCCATGGCC 61.392 60.000 6.96 11.03 36.83 5.36
2229 2755 0.395724 GGAAATTCGGTCCATGGCCT 60.396 55.000 19.11 4.21 35.05 5.19
2230 2756 0.740737 GAAATTCGGTCCATGGCCTG 59.259 55.000 19.11 9.31 0.00 4.85
2231 2757 0.039618 AAATTCGGTCCATGGCCTGT 59.960 50.000 19.11 6.04 0.00 4.00
2232 2758 0.916086 AATTCGGTCCATGGCCTGTA 59.084 50.000 19.11 3.68 0.00 2.74
2233 2759 1.140312 ATTCGGTCCATGGCCTGTAT 58.860 50.000 19.11 5.86 0.00 2.29
2234 2760 0.180171 TTCGGTCCATGGCCTGTATG 59.820 55.000 19.11 0.00 0.00 2.39
2235 2761 1.227943 CGGTCCATGGCCTGTATGG 60.228 63.158 19.11 13.35 45.17 2.74
2236 2762 1.922821 GGTCCATGGCCTGTATGGT 59.077 57.895 17.76 0.00 44.35 3.55
2237 2763 1.136828 GGTCCATGGCCTGTATGGTA 58.863 55.000 17.76 4.98 44.35 3.25
2238 2764 1.705186 GGTCCATGGCCTGTATGGTAT 59.295 52.381 17.76 0.00 44.35 2.73
2239 2765 2.553028 GGTCCATGGCCTGTATGGTATG 60.553 54.545 17.76 4.69 44.35 2.39
2240 2766 1.704628 TCCATGGCCTGTATGGTATGG 59.295 52.381 17.76 13.02 45.60 2.74
2242 2768 1.075601 ATGGCCTGTATGGTATGGGG 58.924 55.000 3.32 0.00 38.35 4.96
2243 2769 1.065410 TGGCCTGTATGGTATGGGGG 61.065 60.000 3.32 0.00 38.35 5.40
2258 2784 2.241171 GGGGGAAACTTTGTCGACG 58.759 57.895 11.62 0.00 0.00 5.12
2259 2785 0.249996 GGGGGAAACTTTGTCGACGA 60.250 55.000 11.62 6.16 0.00 4.20
2260 2786 1.609841 GGGGGAAACTTTGTCGACGAT 60.610 52.381 11.62 0.00 0.00 3.73
2262 2788 1.389106 GGGAAACTTTGTCGACGATCG 59.611 52.381 14.88 14.88 42.10 3.69
2270 2796 3.509659 TCGACGATCGAGCCATGT 58.490 55.556 24.34 0.00 44.82 3.21
2271 2797 1.064134 TCGACGATCGAGCCATGTG 59.936 57.895 24.34 2.00 44.82 3.21
2343 2914 4.987832 TGTGGTGTGTTTGTTAACATGAC 58.012 39.130 9.56 11.73 45.41 3.06
2408 2979 2.639327 GCCACATGACCCTGCCAAC 61.639 63.158 0.00 0.00 0.00 3.77
2437 3008 2.935481 CCCACCCTGAGGCCTCAA 60.935 66.667 34.30 19.03 39.39 3.02
2438 3009 2.673523 CCACCCTGAGGCCTCAAG 59.326 66.667 34.30 28.40 39.39 3.02
2439 3010 2.673523 CACCCTGAGGCCTCAAGG 59.326 66.667 38.51 38.51 44.72 3.61
2440 3011 2.612115 ACCCTGAGGCCTCAAGGG 60.612 66.667 40.76 40.76 43.74 3.95
2441 3012 3.415087 CCCTGAGGCCTCAAGGGG 61.415 72.222 38.13 36.46 40.87 4.79
2442 3013 2.285668 CCTGAGGCCTCAAGGGGA 60.286 66.667 34.30 12.41 39.39 4.81
2443 3014 2.674220 CCTGAGGCCTCAAGGGGAC 61.674 68.421 34.30 6.90 39.39 4.46
2444 3015 1.920325 CTGAGGCCTCAAGGGGACA 60.920 63.158 34.30 11.53 39.39 4.02
2445 3016 1.229951 TGAGGCCTCAAGGGGACAT 60.230 57.895 33.41 0.00 36.69 3.06
2446 3017 1.274703 TGAGGCCTCAAGGGGACATC 61.275 60.000 33.41 2.78 36.69 3.06
2447 3018 1.229951 AGGCCTCAAGGGGACATCA 60.230 57.895 0.00 0.00 36.69 3.07
2448 3019 1.225704 GGCCTCAAGGGGACATCAG 59.774 63.158 0.00 0.00 33.76 2.90
2449 3020 1.452833 GCCTCAAGGGGACATCAGC 60.453 63.158 0.00 0.00 35.18 4.26
2450 3021 1.993653 CCTCAAGGGGACATCAGCA 59.006 57.895 0.00 0.00 0.00 4.41
2451 3022 0.107312 CCTCAAGGGGACATCAGCAG 60.107 60.000 0.00 0.00 0.00 4.24
2452 3023 0.617413 CTCAAGGGGACATCAGCAGT 59.383 55.000 0.00 0.00 0.00 4.40
2453 3024 0.325933 TCAAGGGGACATCAGCAGTG 59.674 55.000 0.00 0.00 0.00 3.66
2454 3025 0.679002 CAAGGGGACATCAGCAGTGG 60.679 60.000 0.00 0.00 0.00 4.00
2455 3026 2.439156 GGGGACATCAGCAGTGGC 60.439 66.667 0.00 0.00 41.61 5.01
2500 3071 3.461773 GCTGCCCGAGCTAGTCCA 61.462 66.667 0.00 0.00 45.21 4.02
2501 3072 2.811101 CTGCCCGAGCTAGTCCAG 59.189 66.667 0.00 0.00 40.80 3.86
2502 3073 1.754621 CTGCCCGAGCTAGTCCAGA 60.755 63.158 5.43 0.00 40.80 3.86
2503 3074 1.304962 TGCCCGAGCTAGTCCAGAA 60.305 57.895 0.00 0.00 40.80 3.02
2504 3075 0.902984 TGCCCGAGCTAGTCCAGAAA 60.903 55.000 0.00 0.00 40.80 2.52
2505 3076 0.466124 GCCCGAGCTAGTCCAGAAAT 59.534 55.000 0.00 0.00 35.50 2.17
2506 3077 1.134371 GCCCGAGCTAGTCCAGAAATT 60.134 52.381 0.00 0.00 35.50 1.82
2507 3078 2.681097 GCCCGAGCTAGTCCAGAAATTT 60.681 50.000 0.00 0.00 35.50 1.82
2508 3079 3.431766 GCCCGAGCTAGTCCAGAAATTTA 60.432 47.826 0.00 0.00 35.50 1.40
2509 3080 4.120589 CCCGAGCTAGTCCAGAAATTTAC 58.879 47.826 0.00 0.00 0.00 2.01
2510 3081 4.141914 CCCGAGCTAGTCCAGAAATTTACT 60.142 45.833 0.00 0.00 0.00 2.24
2511 3082 5.044558 CCGAGCTAGTCCAGAAATTTACTC 58.955 45.833 0.00 0.00 0.00 2.59
2512 3083 5.044558 CGAGCTAGTCCAGAAATTTACTCC 58.955 45.833 0.00 0.00 0.00 3.85
2513 3084 5.163499 CGAGCTAGTCCAGAAATTTACTCCT 60.163 44.000 0.00 0.00 0.00 3.69
2514 3085 6.039493 CGAGCTAGTCCAGAAATTTACTCCTA 59.961 42.308 0.00 0.00 0.00 2.94
2515 3086 7.416438 CGAGCTAGTCCAGAAATTTACTCCTAA 60.416 40.741 0.00 0.00 0.00 2.69
2516 3087 7.787028 AGCTAGTCCAGAAATTTACTCCTAAG 58.213 38.462 0.00 0.00 0.00 2.18
2517 3088 6.480651 GCTAGTCCAGAAATTTACTCCTAAGC 59.519 42.308 0.00 0.00 0.00 3.09
2518 3089 5.420409 AGTCCAGAAATTTACTCCTAAGCG 58.580 41.667 0.00 0.00 0.00 4.68
2519 3090 4.034163 GTCCAGAAATTTACTCCTAAGCGC 59.966 45.833 0.00 0.00 0.00 5.92
2520 3091 4.081087 TCCAGAAATTTACTCCTAAGCGCT 60.081 41.667 2.64 2.64 0.00 5.92
2521 3092 5.128171 TCCAGAAATTTACTCCTAAGCGCTA 59.872 40.000 12.05 0.00 0.00 4.26
2522 3093 5.463724 CCAGAAATTTACTCCTAAGCGCTAG 59.536 44.000 12.05 6.91 0.00 3.42
2523 3094 6.043411 CAGAAATTTACTCCTAAGCGCTAGT 58.957 40.000 12.05 13.62 0.00 2.57
2524 3095 6.019479 CAGAAATTTACTCCTAAGCGCTAGTG 60.019 42.308 18.57 10.73 0.00 2.74
2525 3096 5.340439 AATTTACTCCTAAGCGCTAGTGT 57.660 39.130 18.57 15.22 0.00 3.55
2526 3097 4.796038 TTTACTCCTAAGCGCTAGTGTT 57.204 40.909 18.57 2.23 0.00 3.32
2527 3098 5.902613 TTTACTCCTAAGCGCTAGTGTTA 57.097 39.130 18.57 3.36 0.00 2.41
2528 3099 5.902613 TTACTCCTAAGCGCTAGTGTTAA 57.097 39.130 18.57 4.58 0.00 2.01
2529 3100 6.461110 TTACTCCTAAGCGCTAGTGTTAAT 57.539 37.500 18.57 0.00 0.00 1.40
2530 3101 4.934515 ACTCCTAAGCGCTAGTGTTAATC 58.065 43.478 12.05 0.00 0.00 1.75
2531 3102 4.401519 ACTCCTAAGCGCTAGTGTTAATCA 59.598 41.667 12.05 0.00 0.00 2.57
2532 3103 5.105473 ACTCCTAAGCGCTAGTGTTAATCAA 60.105 40.000 12.05 0.00 0.00 2.57
2533 3104 5.914033 TCCTAAGCGCTAGTGTTAATCAAT 58.086 37.500 12.05 0.00 0.00 2.57
2534 3105 5.753438 TCCTAAGCGCTAGTGTTAATCAATG 59.247 40.000 12.05 0.00 0.00 2.82
2535 3106 4.882671 AAGCGCTAGTGTTAATCAATGG 57.117 40.909 12.05 0.00 0.00 3.16
2536 3107 3.873910 AGCGCTAGTGTTAATCAATGGT 58.126 40.909 8.99 0.00 0.00 3.55
2537 3108 4.261801 AGCGCTAGTGTTAATCAATGGTT 58.738 39.130 8.99 0.00 0.00 3.67
2538 3109 5.424757 AGCGCTAGTGTTAATCAATGGTTA 58.575 37.500 8.99 0.00 0.00 2.85
2539 3110 5.523916 AGCGCTAGTGTTAATCAATGGTTAG 59.476 40.000 8.99 0.00 0.00 2.34
2540 3111 5.522460 GCGCTAGTGTTAATCAATGGTTAGA 59.478 40.000 0.00 0.00 0.00 2.10
2541 3112 6.036735 GCGCTAGTGTTAATCAATGGTTAGAA 59.963 38.462 0.00 0.00 0.00 2.10
2542 3113 7.621991 CGCTAGTGTTAATCAATGGTTAGAAG 58.378 38.462 0.00 0.00 0.00 2.85
2543 3114 7.410485 GCTAGTGTTAATCAATGGTTAGAAGC 58.590 38.462 0.00 0.00 0.00 3.86
2544 3115 7.065803 GCTAGTGTTAATCAATGGTTAGAAGCA 59.934 37.037 0.00 0.00 41.10 3.91
2545 3116 7.759489 AGTGTTAATCAATGGTTAGAAGCAA 57.241 32.000 0.00 0.00 40.14 3.91
2546 3117 7.820648 AGTGTTAATCAATGGTTAGAAGCAAG 58.179 34.615 0.00 0.00 40.14 4.01
2547 3118 7.665559 AGTGTTAATCAATGGTTAGAAGCAAGA 59.334 33.333 0.00 0.99 40.14 3.02
2548 3119 8.462016 GTGTTAATCAATGGTTAGAAGCAAGAT 58.538 33.333 0.00 3.19 40.14 2.40
2549 3120 9.023962 TGTTAATCAATGGTTAGAAGCAAGATT 57.976 29.630 19.90 19.90 42.44 2.40
2550 3121 9.860898 GTTAATCAATGGTTAGAAGCAAGATTT 57.139 29.630 20.62 11.48 41.30 2.17
2552 3123 7.951347 ATCAATGGTTAGAAGCAAGATTTCT 57.049 32.000 0.00 0.00 40.14 2.52
2553 3124 7.765695 TCAATGGTTAGAAGCAAGATTTCTT 57.234 32.000 0.00 0.00 40.14 2.52
2554 3125 8.181904 TCAATGGTTAGAAGCAAGATTTCTTT 57.818 30.769 0.00 0.00 40.14 2.52
2555 3126 8.084073 TCAATGGTTAGAAGCAAGATTTCTTTG 58.916 33.333 0.00 0.00 40.14 2.77
2556 3127 6.331369 TGGTTAGAAGCAAGATTTCTTTGG 57.669 37.500 0.00 0.00 36.38 3.28
2557 3128 5.243730 TGGTTAGAAGCAAGATTTCTTTGGG 59.756 40.000 0.00 0.00 36.38 4.12
2558 3129 3.949842 AGAAGCAAGATTTCTTTGGGC 57.050 42.857 0.00 0.00 33.11 5.36
2559 3130 3.233507 AGAAGCAAGATTTCTTTGGGCA 58.766 40.909 4.55 0.00 33.11 5.36
2560 3131 3.257624 AGAAGCAAGATTTCTTTGGGCAG 59.742 43.478 4.55 0.00 33.11 4.85
2561 3132 2.880443 AGCAAGATTTCTTTGGGCAGA 58.120 42.857 4.55 0.00 33.11 4.26
2562 3133 3.438183 AGCAAGATTTCTTTGGGCAGAT 58.562 40.909 4.55 0.00 33.11 2.90
2563 3134 3.194968 AGCAAGATTTCTTTGGGCAGATG 59.805 43.478 4.55 0.00 33.11 2.90
2564 3135 3.677976 GCAAGATTTCTTTGGGCAGATGG 60.678 47.826 0.00 0.00 33.11 3.51
2565 3136 2.105766 AGATTTCTTTGGGCAGATGGC 58.894 47.619 0.00 0.00 43.74 4.40
2566 3137 4.073208 AAGATTTCTTTGGGCAGATGGCA 61.073 43.478 8.76 0.00 37.24 4.92
2567 3138 5.893501 AAGATTTCTTTGGGCAGATGGCAG 61.894 45.833 8.76 0.00 37.24 4.85
2574 3145 3.185155 GCAGATGGCAGCTCACAC 58.815 61.111 0.27 0.00 43.97 3.82
2575 3146 1.376942 GCAGATGGCAGCTCACACT 60.377 57.895 0.27 0.00 43.97 3.55
2576 3147 1.645704 GCAGATGGCAGCTCACACTG 61.646 60.000 0.27 0.00 43.97 3.66
2577 3148 0.321387 CAGATGGCAGCTCACACTGT 60.321 55.000 0.27 0.00 39.96 3.55
2578 3149 0.036577 AGATGGCAGCTCACACTGTC 60.037 55.000 0.00 0.00 42.75 3.51
2580 3151 1.070275 TGGCAGCTCACACTGTCAG 59.930 57.895 0.00 0.00 46.89 3.51
2581 3152 1.368950 GGCAGCTCACACTGTCAGA 59.631 57.895 6.91 0.00 42.00 3.27
2582 3153 0.669932 GGCAGCTCACACTGTCAGAG 60.670 60.000 6.91 0.40 42.00 3.35
2583 3154 0.033228 GCAGCTCACACTGTCAGAGT 59.967 55.000 6.91 1.17 39.96 3.24
2584 3155 1.539929 GCAGCTCACACTGTCAGAGTT 60.540 52.381 6.91 0.19 39.96 3.01
2585 3156 2.288457 GCAGCTCACACTGTCAGAGTTA 60.288 50.000 6.91 0.00 39.96 2.24
2586 3157 3.800261 GCAGCTCACACTGTCAGAGTTAA 60.800 47.826 6.91 0.00 39.96 2.01
2587 3158 3.738282 CAGCTCACACTGTCAGAGTTAAC 59.262 47.826 6.91 0.00 29.75 2.01
2588 3159 3.639094 AGCTCACACTGTCAGAGTTAACT 59.361 43.478 8.13 8.13 29.75 2.24
2589 3160 3.984633 GCTCACACTGTCAGAGTTAACTC 59.015 47.826 25.24 25.24 43.17 3.01
2590 3161 8.394893 CAGCTCACACTGTCAGAGTTAACTCT 62.395 46.154 28.73 28.73 42.02 3.24
2591 3162 9.758520 CAGCTCACACTGTCAGAGTTAACTCTT 62.759 44.444 31.17 16.60 40.73 2.85
2598 3169 3.154589 GAGTTAACTCTTGCCCGGG 57.845 57.895 25.30 19.09 39.81 5.73
2599 3170 1.002502 AGTTAACTCTTGCCCGGGC 60.003 57.895 39.40 39.40 42.35 6.13
2600 3171 1.002502 GTTAACTCTTGCCCGGGCT 60.003 57.895 43.34 26.37 42.51 5.19
2601 3172 1.002624 TTAACTCTTGCCCGGGCTG 60.003 57.895 43.34 33.91 42.51 4.85
2602 3173 3.622060 TAACTCTTGCCCGGGCTGC 62.622 63.158 43.34 20.70 42.51 5.25
2604 3175 4.809496 CTCTTGCCCGGGCTGCAT 62.809 66.667 43.34 0.00 42.51 3.96
2605 3176 4.365111 TCTTGCCCGGGCTGCATT 62.365 61.111 43.34 0.00 42.51 3.56
2606 3177 3.830192 CTTGCCCGGGCTGCATTC 61.830 66.667 43.34 16.20 42.51 2.67
2607 3178 4.675161 TTGCCCGGGCTGCATTCA 62.675 61.111 43.34 21.57 42.51 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.312828 GAGAGATAACTATGCACGGCTG 58.687 50.000 0.00 0.00 0.00 4.85
34 35 3.627732 ACGAGAGATAACTATGCACGG 57.372 47.619 0.00 0.00 0.00 4.94
48 52 1.283181 CCGGATCCGCTTACGAGAG 59.717 63.158 29.12 7.77 43.93 3.20
76 118 1.228337 AAGCTCACATGCAGCACCA 60.228 52.632 17.27 0.00 39.56 4.17
115 163 2.906389 TGTGGCCATAGCTAGGATTAGG 59.094 50.000 9.72 0.00 39.73 2.69
167 215 4.406173 GCACTGCTGCTGCTGCTG 62.406 66.667 27.75 27.75 40.63 4.41
168 216 4.949098 TGCACTGCTGCTGCTGCT 62.949 61.111 27.67 9.87 44.57 4.24
180 228 0.541392 TTCCCGTCTATGCATGCACT 59.459 50.000 25.37 14.70 0.00 4.40
273 328 7.809880 ATGTTAGTTTAAGGAGGGAGTAAGT 57.190 36.000 0.00 0.00 0.00 2.24
278 333 6.987404 GCTCTTATGTTAGTTTAAGGAGGGAG 59.013 42.308 0.00 0.00 0.00 4.30
279 334 6.406624 CGCTCTTATGTTAGTTTAAGGAGGGA 60.407 42.308 0.00 0.00 0.00 4.20
280 335 5.753921 CGCTCTTATGTTAGTTTAAGGAGGG 59.246 44.000 0.00 0.00 0.00 4.30
281 336 6.338937 ACGCTCTTATGTTAGTTTAAGGAGG 58.661 40.000 0.00 0.00 0.00 4.30
282 337 7.829378 AACGCTCTTATGTTAGTTTAAGGAG 57.171 36.000 0.00 0.00 0.00 3.69
283 338 9.362539 CTAAACGCTCTTATGTTAGTTTAAGGA 57.637 33.333 0.00 0.00 34.84 3.36
284 339 9.362539 TCTAAACGCTCTTATGTTAGTTTAAGG 57.637 33.333 0.00 0.00 34.84 2.69
288 343 8.870879 GTGATCTAAACGCTCTTATGTTAGTTT 58.129 33.333 0.00 0.00 36.11 2.66
289 344 8.251721 AGTGATCTAAACGCTCTTATGTTAGTT 58.748 33.333 0.00 0.00 0.00 2.24
290 345 7.773149 AGTGATCTAAACGCTCTTATGTTAGT 58.227 34.615 0.00 0.00 0.00 2.24
291 346 9.171701 GTAGTGATCTAAACGCTCTTATGTTAG 57.828 37.037 0.00 0.00 0.00 2.34
292 347 8.900781 AGTAGTGATCTAAACGCTCTTATGTTA 58.099 33.333 0.00 0.00 0.00 2.41
293 348 7.773149 AGTAGTGATCTAAACGCTCTTATGTT 58.227 34.615 0.00 0.00 0.00 2.71
294 349 7.336161 AGTAGTGATCTAAACGCTCTTATGT 57.664 36.000 0.00 0.00 0.00 2.29
295 350 8.635877 AAAGTAGTGATCTAAACGCTCTTATG 57.364 34.615 0.00 0.00 0.00 1.90
296 351 9.733219 GTAAAGTAGTGATCTAAACGCTCTTAT 57.267 33.333 0.00 0.00 0.00 1.73
297 352 8.733458 TGTAAAGTAGTGATCTAAACGCTCTTA 58.267 33.333 0.00 0.00 0.00 2.10
298 353 7.600065 TGTAAAGTAGTGATCTAAACGCTCTT 58.400 34.615 0.00 0.00 0.00 2.85
299 354 7.120873 TCTGTAAAGTAGTGATCTAAACGCTCT 59.879 37.037 0.00 0.00 0.00 4.09
300 355 7.249147 TCTGTAAAGTAGTGATCTAAACGCTC 58.751 38.462 0.00 0.00 0.00 5.03
301 356 7.154435 TCTGTAAAGTAGTGATCTAAACGCT 57.846 36.000 0.00 0.00 0.00 5.07
302 357 6.472808 CCTCTGTAAAGTAGTGATCTAAACGC 59.527 42.308 0.00 0.00 0.00 4.84
303 358 6.973474 CCCTCTGTAAAGTAGTGATCTAAACG 59.027 42.308 0.00 0.00 0.00 3.60
304 359 8.064336 TCCCTCTGTAAAGTAGTGATCTAAAC 57.936 38.462 0.00 0.00 0.00 2.01
305 360 7.894364 ACTCCCTCTGTAAAGTAGTGATCTAAA 59.106 37.037 0.00 0.00 0.00 1.85
306 361 7.411808 ACTCCCTCTGTAAAGTAGTGATCTAA 58.588 38.462 0.00 0.00 0.00 2.10
307 362 6.971340 ACTCCCTCTGTAAAGTAGTGATCTA 58.029 40.000 0.00 0.00 0.00 1.98
308 363 5.833340 ACTCCCTCTGTAAAGTAGTGATCT 58.167 41.667 0.00 0.00 0.00 2.75
309 364 7.266922 CTACTCCCTCTGTAAAGTAGTGATC 57.733 44.000 0.00 0.00 37.49 2.92
316 371 9.939424 AGATAAATACTACTCCCTCTGTAAAGT 57.061 33.333 0.00 0.00 0.00 2.66
355 410 8.506086 GACTGTTGAGTATAGGAGGAAGACCTT 61.506 44.444 0.00 0.00 38.58 3.50
356 411 7.086397 GACTGTTGAGTATAGGAGGAAGACCT 61.086 46.154 0.00 0.00 40.25 3.85
357 412 4.957327 ACTGTTGAGTATAGGAGGAAGACC 59.043 45.833 0.00 0.00 0.00 3.85
358 413 5.220892 CGACTGTTGAGTATAGGAGGAAGAC 60.221 48.000 0.00 0.00 30.16 3.01
359 414 4.882427 CGACTGTTGAGTATAGGAGGAAGA 59.118 45.833 0.00 0.00 30.16 2.87
360 415 4.498345 GCGACTGTTGAGTATAGGAGGAAG 60.498 50.000 0.00 0.00 30.16 3.46
361 416 3.380637 GCGACTGTTGAGTATAGGAGGAA 59.619 47.826 0.00 0.00 30.16 3.36
365 420 3.014304 AGGCGACTGTTGAGTATAGGA 57.986 47.619 0.00 0.00 41.13 2.94
366 421 3.448686 CAAGGCGACTGTTGAGTATAGG 58.551 50.000 0.00 0.00 42.68 2.57
368 423 2.418197 GCCAAGGCGACTGTTGAGTATA 60.418 50.000 0.00 0.00 42.68 1.47
397 457 1.821136 CATGCCTCTTGAGGGGAAAAC 59.179 52.381 17.33 1.50 0.00 2.43
404 617 1.030488 CACTGGCATGCCTCTTGAGG 61.030 60.000 35.53 18.28 36.94 3.86
428 641 1.322442 GGCACAGCTTTTTCCTCAGT 58.678 50.000 0.00 0.00 0.00 3.41
440 653 3.506067 ACCAAACTATAACTTGGCACAGC 59.494 43.478 10.95 0.00 45.08 4.40
441 654 4.082787 CCACCAAACTATAACTTGGCACAG 60.083 45.833 10.95 0.00 45.08 3.66
465 678 1.004361 AGATGTCTACCCCCACCCC 59.996 63.158 0.00 0.00 0.00 4.95
466 679 0.031010 AGAGATGTCTACCCCCACCC 60.031 60.000 0.00 0.00 0.00 4.61
467 680 1.486726 CAAGAGATGTCTACCCCCACC 59.513 57.143 0.00 0.00 30.45 4.61
468 681 2.188817 ACAAGAGATGTCTACCCCCAC 58.811 52.381 0.00 0.00 37.96 4.61
469 682 2.642171 ACAAGAGATGTCTACCCCCA 57.358 50.000 0.00 0.00 37.96 4.96
470 683 3.967987 ACATACAAGAGATGTCTACCCCC 59.032 47.826 0.00 0.00 42.70 5.40
471 684 6.919775 ATACATACAAGAGATGTCTACCCC 57.080 41.667 0.00 0.00 42.70 4.95
472 685 9.026121 ACATATACATACAAGAGATGTCTACCC 57.974 37.037 0.00 0.00 42.70 3.69
493 706 9.070179 TCTAGCATGCAATTTTGACATACATAT 57.930 29.630 21.98 0.00 0.00 1.78
519 732 7.093201 ACCTGAAACTTCATATGCCAAATGATT 60.093 33.333 0.00 0.00 36.46 2.57
592 830 1.276415 GCGACTCTCTCTGCATGTTC 58.724 55.000 0.00 0.00 0.00 3.18
593 831 0.108424 GGCGACTCTCTCTGCATGTT 60.108 55.000 0.00 0.00 0.00 2.71
601 839 2.606155 CTTCCTGCGGCGACTCTCTC 62.606 65.000 12.98 0.00 0.00 3.20
602 840 2.676822 TTCCTGCGGCGACTCTCT 60.677 61.111 12.98 0.00 0.00 3.10
790 1069 1.274167 TGGCGCGGGAGGTATAAATAG 59.726 52.381 8.83 0.00 0.00 1.73
919 1233 2.087009 CCGTCTTCGTCTTCGTGCC 61.087 63.158 0.00 0.00 38.33 5.01
1095 1420 0.326143 TGTGCATGGGCTAGGTAGGA 60.326 55.000 0.00 0.00 41.91 2.94
1170 1504 3.118454 CGCCACACCGTCATCACC 61.118 66.667 0.00 0.00 0.00 4.02
1186 1536 3.777925 CCGCGTCTTCCTGCAACG 61.778 66.667 4.92 3.54 39.33 4.10
1218 1596 2.674033 TCCTCCGCCGTCTCGAAA 60.674 61.111 0.00 0.00 0.00 3.46
1313 1709 4.200283 CGGAGGAGGAGACGCTGC 62.200 72.222 0.00 0.00 0.00 5.25
1546 2047 0.251354 ATCATCTGCTCCACGTGCTT 59.749 50.000 10.91 0.00 0.00 3.91
1634 2140 1.221293 CAGAGGCAGAGGAAGCAGG 59.779 63.158 0.00 0.00 0.00 4.85
1654 2160 2.027377 CCAAGAACACAGAGAGGAGCAT 60.027 50.000 0.00 0.00 0.00 3.79
1655 2161 1.345741 CCAAGAACACAGAGAGGAGCA 59.654 52.381 0.00 0.00 0.00 4.26
1657 2163 1.671261 CGCCAAGAACACAGAGAGGAG 60.671 57.143 0.00 0.00 0.00 3.69
1658 2164 0.318441 CGCCAAGAACACAGAGAGGA 59.682 55.000 0.00 0.00 0.00 3.71
1668 2177 2.170273 GTCGTTCGCGCCAAGAAC 59.830 61.111 14.39 14.39 43.16 3.01
1706 2215 1.012841 ACGCTACGCTACACTAGACC 58.987 55.000 0.00 0.00 0.00 3.85
1710 2219 2.621338 ACACTACGCTACGCTACACTA 58.379 47.619 0.00 0.00 0.00 2.74
1770 2279 1.030488 TACGAGCTCTTCTCCGGTGG 61.030 60.000 12.85 0.00 38.62 4.61
1793 2302 2.171341 AGAAGAACTCTTGGCCGAAC 57.829 50.000 0.00 0.00 36.11 3.95
1795 2304 1.201647 CGTAGAAGAACTCTTGGCCGA 59.798 52.381 0.00 0.00 36.11 5.54
1796 2305 1.630148 CGTAGAAGAACTCTTGGCCG 58.370 55.000 0.00 0.00 36.11 6.13
1797 2306 1.066787 AGCGTAGAAGAACTCTTGGCC 60.067 52.381 0.00 0.00 36.11 5.36
1798 2307 2.371910 AGCGTAGAAGAACTCTTGGC 57.628 50.000 0.00 0.00 36.11 4.52
1831 2343 8.082852 AGATGCTAAATACGAGGTACAGTTATG 58.917 37.037 0.00 0.00 0.00 1.90
1927 2439 4.090498 CGAGCACCGTAAAAGGTAGTAAAC 59.910 45.833 0.00 0.00 43.89 2.01
1962 2477 4.296690 ACACAAAGCACGTAGACTAGAAC 58.703 43.478 0.00 0.00 0.00 3.01
1988 2503 4.603131 TCAGATGGCTGGCTAAAAAGAAT 58.397 39.130 2.00 0.00 42.53 2.40
1991 2506 4.036498 CAGATCAGATGGCTGGCTAAAAAG 59.964 45.833 2.00 0.00 42.53 2.27
1992 2507 3.949754 CAGATCAGATGGCTGGCTAAAAA 59.050 43.478 2.00 0.00 42.53 1.94
2020 2541 5.139435 TGTTTGATGTCTTGACTCTCGAT 57.861 39.130 2.35 0.00 0.00 3.59
2081 2607 1.226974 CGCCATTGATCGGTCTCGT 60.227 57.895 0.00 0.00 37.69 4.18
2085 2611 0.529773 TAGCACGCCATTGATCGGTC 60.530 55.000 0.00 0.00 0.00 4.79
2106 2632 3.899734 TGATTGATTGGTTTCGTTGCAG 58.100 40.909 0.00 0.00 0.00 4.41
2107 2633 3.317711 ACTGATTGATTGGTTTCGTTGCA 59.682 39.130 0.00 0.00 0.00 4.08
2108 2634 3.670055 CACTGATTGATTGGTTTCGTTGC 59.330 43.478 0.00 0.00 0.00 4.17
2109 2635 4.229096 CCACTGATTGATTGGTTTCGTTG 58.771 43.478 0.00 0.00 0.00 4.10
2112 2638 2.728846 CGCCACTGATTGATTGGTTTCG 60.729 50.000 0.00 0.00 32.50 3.46
2113 2639 2.228822 ACGCCACTGATTGATTGGTTTC 59.771 45.455 0.00 0.00 32.50 2.78
2114 2640 2.030007 CACGCCACTGATTGATTGGTTT 60.030 45.455 0.00 0.00 32.50 3.27
2116 2642 1.167851 CACGCCACTGATTGATTGGT 58.832 50.000 0.00 0.00 32.50 3.67
2117 2643 0.179156 GCACGCCACTGATTGATTGG 60.179 55.000 0.00 0.00 0.00 3.16
2118 2644 0.806868 AGCACGCCACTGATTGATTG 59.193 50.000 0.00 0.00 0.00 2.67
2121 2647 1.375908 GGAGCACGCCACTGATTGA 60.376 57.895 0.00 0.00 0.00 2.57
2155 2681 6.084925 CGTCTAGCTGGTTTATTATCCTACG 58.915 44.000 0.00 0.00 0.00 3.51
2156 2682 5.862860 GCGTCTAGCTGGTTTATTATCCTAC 59.137 44.000 0.00 0.00 44.04 3.18
2157 2683 5.335426 CGCGTCTAGCTGGTTTATTATCCTA 60.335 44.000 0.00 0.00 45.59 2.94
2158 2684 4.558898 CGCGTCTAGCTGGTTTATTATCCT 60.559 45.833 0.00 0.00 45.59 3.24
2159 2685 3.673809 CGCGTCTAGCTGGTTTATTATCC 59.326 47.826 0.00 0.00 45.59 2.59
2169 2695 4.880537 CCAGGCGCGTCTAGCTGG 62.881 72.222 15.40 7.82 45.59 4.85
2174 2700 1.153647 CATCAACCAGGCGCGTCTA 60.154 57.895 15.40 0.00 0.00 2.59
2185 2711 1.464997 GTCGTTGGCTCTTCATCAACC 59.535 52.381 0.00 0.00 37.93 3.77
2188 2714 1.069978 TGTGTCGTTGGCTCTTCATCA 59.930 47.619 0.00 0.00 0.00 3.07
2195 2721 0.534203 TTTCCCTGTGTCGTTGGCTC 60.534 55.000 0.00 0.00 0.00 4.70
2196 2722 0.110486 ATTTCCCTGTGTCGTTGGCT 59.890 50.000 0.00 0.00 0.00 4.75
2197 2723 0.958822 AATTTCCCTGTGTCGTTGGC 59.041 50.000 0.00 0.00 0.00 4.52
2198 2724 1.196808 CGAATTTCCCTGTGTCGTTGG 59.803 52.381 0.00 0.00 0.00 3.77
2200 2726 1.202722 ACCGAATTTCCCTGTGTCGTT 60.203 47.619 0.00 0.00 0.00 3.85
2201 2727 0.395312 ACCGAATTTCCCTGTGTCGT 59.605 50.000 0.00 0.00 0.00 4.34
2203 2729 1.271163 TGGACCGAATTTCCCTGTGTC 60.271 52.381 0.00 0.00 31.33 3.67
2204 2730 0.768622 TGGACCGAATTTCCCTGTGT 59.231 50.000 0.00 0.00 31.33 3.72
2205 2731 1.745087 CATGGACCGAATTTCCCTGTG 59.255 52.381 0.00 0.00 31.33 3.66
2206 2732 1.340991 CCATGGACCGAATTTCCCTGT 60.341 52.381 5.56 0.00 31.33 4.00
2207 2733 1.392589 CCATGGACCGAATTTCCCTG 58.607 55.000 5.56 0.00 31.33 4.45
2209 2735 1.391933 GGCCATGGACCGAATTTCCC 61.392 60.000 18.40 0.00 31.33 3.97
2210 2736 0.395724 AGGCCATGGACCGAATTTCC 60.396 55.000 16.13 2.08 0.00 3.13
2211 2737 0.740737 CAGGCCATGGACCGAATTTC 59.259 55.000 16.13 0.00 0.00 2.17
2212 2738 0.039618 ACAGGCCATGGACCGAATTT 59.960 50.000 16.13 0.00 0.00 1.82
2216 2742 1.695114 CCATACAGGCCATGGACCGA 61.695 60.000 16.13 0.00 44.95 4.69
2218 2744 1.136828 TACCATACAGGCCATGGACC 58.863 55.000 23.83 15.57 44.95 4.46
2219 2745 2.783135 CATACCATACAGGCCATGGAC 58.217 52.381 23.83 14.73 44.95 4.02
2221 2747 1.272092 CCCATACCATACAGGCCATGG 60.272 57.143 17.09 17.09 46.09 3.66
2223 2749 1.075601 CCCCATACCATACAGGCCAT 58.924 55.000 5.01 0.00 43.14 4.40
2224 2750 1.065410 CCCCCATACCATACAGGCCA 61.065 60.000 5.01 0.00 43.14 5.36
2225 2751 1.767692 CCCCCATACCATACAGGCC 59.232 63.158 0.00 0.00 43.14 5.19
2240 2766 0.249996 TCGTCGACAAAGTTTCCCCC 60.250 55.000 17.16 0.00 0.00 5.40
2242 2768 1.389106 CGATCGTCGACAAAGTTTCCC 59.611 52.381 17.16 0.00 43.74 3.97
2243 2769 2.322161 TCGATCGTCGACAAAGTTTCC 58.678 47.619 17.16 0.00 44.82 3.13
2244 2770 2.222310 GCTCGATCGTCGACAAAGTTTC 60.222 50.000 17.16 1.78 44.82 2.78
2246 2772 1.337821 GCTCGATCGTCGACAAAGTT 58.662 50.000 17.16 0.00 44.82 2.66
2247 2773 0.456312 GGCTCGATCGTCGACAAAGT 60.456 55.000 17.16 0.00 44.82 2.66
2248 2774 0.456142 TGGCTCGATCGTCGACAAAG 60.456 55.000 17.16 4.12 44.82 2.77
2249 2775 0.172578 ATGGCTCGATCGTCGACAAA 59.827 50.000 17.16 2.91 44.82 2.83
2251 2777 1.064134 CATGGCTCGATCGTCGACA 59.936 57.895 17.16 15.86 44.82 4.35
2254 2780 2.580470 GCACATGGCTCGATCGTCG 61.580 63.158 15.94 8.81 42.10 5.12
2255 2781 2.580470 CGCACATGGCTCGATCGTC 61.580 63.158 15.94 8.23 41.67 4.20
2256 2782 2.583319 CGCACATGGCTCGATCGT 60.583 61.111 15.94 0.00 41.67 3.73
2257 2783 2.583319 ACGCACATGGCTCGATCG 60.583 61.111 9.36 9.36 41.67 3.69
2258 2784 3.009140 CACGCACATGGCTCGATC 58.991 61.111 9.83 0.00 41.67 3.69
2259 2785 3.197790 GCACGCACATGGCTCGAT 61.198 61.111 9.83 0.00 41.67 3.59
2262 2788 2.813474 TACGCACGCACATGGCTC 60.813 61.111 0.00 0.00 41.67 4.70
2263 2789 3.118454 GTACGCACGCACATGGCT 61.118 61.111 0.00 0.00 41.67 4.75
2264 2790 4.499023 CGTACGCACGCACATGGC 62.499 66.667 0.52 0.00 42.05 4.40
2276 2802 1.012234 GGTACCGCGACTACGTACG 60.012 63.158 15.01 15.01 41.98 3.67
2277 2803 0.657840 ATGGTACCGCGACTACGTAC 59.342 55.000 8.23 10.99 41.98 3.67
2278 2804 0.937304 GATGGTACCGCGACTACGTA 59.063 55.000 8.23 0.00 41.98 3.57
2280 2806 0.316772 CTGATGGTACCGCGACTACG 60.317 60.000 8.23 0.00 42.93 3.51
2281 2807 1.019673 TCTGATGGTACCGCGACTAC 58.980 55.000 8.23 6.52 0.00 2.73
2282 2808 1.878088 GATCTGATGGTACCGCGACTA 59.122 52.381 8.23 0.00 0.00 2.59
2284 2810 0.660595 CGATCTGATGGTACCGCGAC 60.661 60.000 8.23 0.00 0.00 5.19
2285 2811 1.099295 ACGATCTGATGGTACCGCGA 61.099 55.000 8.23 1.04 0.00 5.87
2287 2813 0.597637 CCACGATCTGATGGTACCGC 60.598 60.000 7.57 2.25 0.00 5.68
2288 2814 0.032130 CCCACGATCTGATGGTACCG 59.968 60.000 7.57 0.00 33.80 4.02
2343 2914 2.224314 CAGATATGCAGCATCAGCACAG 59.776 50.000 12.38 0.00 45.95 3.66
2430 3001 1.225704 CTGATGTCCCCTTGAGGCC 59.774 63.158 0.00 0.00 0.00 5.19
2431 3002 1.452833 GCTGATGTCCCCTTGAGGC 60.453 63.158 0.00 0.00 0.00 4.70
2432 3003 0.107312 CTGCTGATGTCCCCTTGAGG 60.107 60.000 0.00 0.00 0.00 3.86
2433 3004 0.617413 ACTGCTGATGTCCCCTTGAG 59.383 55.000 0.00 0.00 0.00 3.02
2434 3005 0.325933 CACTGCTGATGTCCCCTTGA 59.674 55.000 0.00 0.00 0.00 3.02
2435 3006 0.679002 CCACTGCTGATGTCCCCTTG 60.679 60.000 0.00 0.00 0.00 3.61
2436 3007 1.687612 CCACTGCTGATGTCCCCTT 59.312 57.895 0.00 0.00 0.00 3.95
2437 3008 2.976490 GCCACTGCTGATGTCCCCT 61.976 63.158 0.00 0.00 33.53 4.79
2438 3009 2.439156 GCCACTGCTGATGTCCCC 60.439 66.667 0.00 0.00 33.53 4.81
2439 3010 2.821366 CGCCACTGCTGATGTCCC 60.821 66.667 0.00 0.00 34.43 4.46
2440 3011 2.821366 CCGCCACTGCTGATGTCC 60.821 66.667 0.00 0.00 34.43 4.02
2441 3012 1.812922 CTCCGCCACTGCTGATGTC 60.813 63.158 0.00 0.00 34.43 3.06
2442 3013 2.267006 CTCCGCCACTGCTGATGT 59.733 61.111 0.00 0.00 34.43 3.06
2443 3014 3.200593 GCTCCGCCACTGCTGATG 61.201 66.667 0.00 0.00 34.43 3.07
2484 3055 1.323271 TTCTGGACTAGCTCGGGCAG 61.323 60.000 11.40 7.70 41.70 4.85
2485 3056 0.902984 TTTCTGGACTAGCTCGGGCA 60.903 55.000 11.40 0.00 41.70 5.36
2486 3057 0.466124 ATTTCTGGACTAGCTCGGGC 59.534 55.000 0.00 0.00 39.06 6.13
2487 3058 2.990066 AATTTCTGGACTAGCTCGGG 57.010 50.000 0.00 0.00 0.00 5.14
2488 3059 5.012328 AGTAAATTTCTGGACTAGCTCGG 57.988 43.478 0.00 0.00 0.00 4.63
2489 3060 5.044558 GGAGTAAATTTCTGGACTAGCTCG 58.955 45.833 0.00 0.00 0.00 5.03
2490 3061 6.228616 AGGAGTAAATTTCTGGACTAGCTC 57.771 41.667 0.00 0.00 0.00 4.09
2491 3062 7.633991 GCTTAGGAGTAAATTTCTGGACTAGCT 60.634 40.741 0.00 0.00 0.00 3.32
2492 3063 6.480651 GCTTAGGAGTAAATTTCTGGACTAGC 59.519 42.308 0.00 0.00 0.00 3.42
2493 3064 6.697892 CGCTTAGGAGTAAATTTCTGGACTAG 59.302 42.308 0.00 0.00 0.00 2.57
2494 3065 6.570692 CGCTTAGGAGTAAATTTCTGGACTA 58.429 40.000 0.00 0.00 0.00 2.59
2495 3066 5.420409 CGCTTAGGAGTAAATTTCTGGACT 58.580 41.667 0.00 0.00 0.00 3.85
2496 3067 4.034163 GCGCTTAGGAGTAAATTTCTGGAC 59.966 45.833 0.00 0.00 0.00 4.02
2497 3068 4.081087 AGCGCTTAGGAGTAAATTTCTGGA 60.081 41.667 2.64 0.00 0.00 3.86
2498 3069 4.192317 AGCGCTTAGGAGTAAATTTCTGG 58.808 43.478 2.64 0.00 0.00 3.86
2499 3070 6.019479 CACTAGCGCTTAGGAGTAAATTTCTG 60.019 42.308 18.68 0.00 33.42 3.02
2500 3071 6.043411 CACTAGCGCTTAGGAGTAAATTTCT 58.957 40.000 18.68 0.00 33.42 2.52
2501 3072 5.811100 ACACTAGCGCTTAGGAGTAAATTTC 59.189 40.000 18.68 0.00 33.42 2.17
2502 3073 5.731591 ACACTAGCGCTTAGGAGTAAATTT 58.268 37.500 18.68 0.00 33.42 1.82
2503 3074 5.340439 ACACTAGCGCTTAGGAGTAAATT 57.660 39.130 18.68 0.00 33.42 1.82
2504 3075 5.340439 AACACTAGCGCTTAGGAGTAAAT 57.660 39.130 18.68 0.00 33.42 1.40
2505 3076 4.796038 AACACTAGCGCTTAGGAGTAAA 57.204 40.909 18.68 0.00 33.42 2.01
2506 3077 5.902613 TTAACACTAGCGCTTAGGAGTAA 57.097 39.130 18.68 5.13 33.42 2.24
2507 3078 5.591472 TGATTAACACTAGCGCTTAGGAGTA 59.409 40.000 18.68 0.00 33.42 2.59
2508 3079 4.401519 TGATTAACACTAGCGCTTAGGAGT 59.598 41.667 18.68 10.58 33.42 3.85
2509 3080 4.933330 TGATTAACACTAGCGCTTAGGAG 58.067 43.478 18.68 9.76 33.42 3.69
2510 3081 4.994907 TGATTAACACTAGCGCTTAGGA 57.005 40.909 18.68 0.00 33.42 2.94
2511 3082 5.050091 CCATTGATTAACACTAGCGCTTAGG 60.050 44.000 18.68 9.34 33.42 2.69
2512 3083 5.523916 ACCATTGATTAACACTAGCGCTTAG 59.476 40.000 18.68 13.68 35.39 2.18
2513 3084 5.424757 ACCATTGATTAACACTAGCGCTTA 58.575 37.500 18.68 0.00 0.00 3.09
2514 3085 4.261801 ACCATTGATTAACACTAGCGCTT 58.738 39.130 18.68 0.00 0.00 4.68
2515 3086 3.873910 ACCATTGATTAACACTAGCGCT 58.126 40.909 17.26 17.26 0.00 5.92
2516 3087 4.616181 AACCATTGATTAACACTAGCGC 57.384 40.909 0.00 0.00 0.00 5.92
2517 3088 7.534085 TTCTAACCATTGATTAACACTAGCG 57.466 36.000 0.00 0.00 0.00 4.26
2518 3089 7.065803 TGCTTCTAACCATTGATTAACACTAGC 59.934 37.037 0.00 0.00 0.00 3.42
2519 3090 8.492673 TGCTTCTAACCATTGATTAACACTAG 57.507 34.615 0.00 0.00 0.00 2.57
2520 3091 8.856153 TTGCTTCTAACCATTGATTAACACTA 57.144 30.769 0.00 0.00 0.00 2.74
2521 3092 7.665559 TCTTGCTTCTAACCATTGATTAACACT 59.334 33.333 0.00 0.00 0.00 3.55
2522 3093 7.816640 TCTTGCTTCTAACCATTGATTAACAC 58.183 34.615 0.00 0.00 0.00 3.32
2523 3094 7.994425 TCTTGCTTCTAACCATTGATTAACA 57.006 32.000 0.00 0.00 0.00 2.41
2524 3095 9.860898 AAATCTTGCTTCTAACCATTGATTAAC 57.139 29.630 0.00 0.00 0.00 2.01
2526 3097 9.466497 AGAAATCTTGCTTCTAACCATTGATTA 57.534 29.630 0.00 0.00 31.28 1.75
2527 3098 8.358582 AGAAATCTTGCTTCTAACCATTGATT 57.641 30.769 0.00 0.00 31.28 2.57
2528 3099 7.951347 AGAAATCTTGCTTCTAACCATTGAT 57.049 32.000 0.00 0.00 31.28 2.57
2529 3100 7.765695 AAGAAATCTTGCTTCTAACCATTGA 57.234 32.000 0.00 0.00 34.38 2.57
2530 3101 7.330208 CCAAAGAAATCTTGCTTCTAACCATTG 59.670 37.037 0.00 0.00 36.12 2.82
2531 3102 7.381323 CCAAAGAAATCTTGCTTCTAACCATT 58.619 34.615 0.00 0.00 36.12 3.16
2532 3103 6.071165 CCCAAAGAAATCTTGCTTCTAACCAT 60.071 38.462 0.00 0.00 36.12 3.55
2533 3104 5.243730 CCCAAAGAAATCTTGCTTCTAACCA 59.756 40.000 0.00 0.00 36.12 3.67
2534 3105 5.714047 CCCAAAGAAATCTTGCTTCTAACC 58.286 41.667 0.00 0.00 36.12 2.85
2535 3106 5.164233 GCCCAAAGAAATCTTGCTTCTAAC 58.836 41.667 0.00 0.00 36.12 2.34
2536 3107 4.832266 TGCCCAAAGAAATCTTGCTTCTAA 59.168 37.500 0.00 0.00 36.12 2.10
2537 3108 4.406456 TGCCCAAAGAAATCTTGCTTCTA 58.594 39.130 0.00 0.00 36.12 2.10
2538 3109 3.233507 TGCCCAAAGAAATCTTGCTTCT 58.766 40.909 0.00 0.00 36.12 2.85
2539 3110 3.256631 TCTGCCCAAAGAAATCTTGCTTC 59.743 43.478 0.00 0.00 36.12 3.86
2540 3111 3.233507 TCTGCCCAAAGAAATCTTGCTT 58.766 40.909 0.00 0.00 36.12 3.91
2541 3112 2.880443 TCTGCCCAAAGAAATCTTGCT 58.120 42.857 0.00 0.00 36.12 3.91
2542 3113 3.518590 CATCTGCCCAAAGAAATCTTGC 58.481 45.455 0.00 0.00 36.12 4.01
2543 3114 3.677976 GCCATCTGCCCAAAGAAATCTTG 60.678 47.826 0.00 0.00 36.12 3.02
2544 3115 2.498885 GCCATCTGCCCAAAGAAATCTT 59.501 45.455 0.00 0.00 37.91 2.40
2545 3116 2.105766 GCCATCTGCCCAAAGAAATCT 58.894 47.619 0.00 0.00 0.00 2.40
2546 3117 1.826720 TGCCATCTGCCCAAAGAAATC 59.173 47.619 0.00 0.00 40.16 2.17
2547 3118 1.829222 CTGCCATCTGCCCAAAGAAAT 59.171 47.619 0.00 0.00 40.16 2.17
2548 3119 1.259609 CTGCCATCTGCCCAAAGAAA 58.740 50.000 0.00 0.00 40.16 2.52
2549 3120 1.252904 GCTGCCATCTGCCCAAAGAA 61.253 55.000 0.00 0.00 40.16 2.52
2550 3121 1.679977 GCTGCCATCTGCCCAAAGA 60.680 57.895 0.00 0.00 40.16 2.52
2551 3122 1.664321 GAGCTGCCATCTGCCCAAAG 61.664 60.000 0.00 0.00 40.16 2.77
2552 3123 1.679977 GAGCTGCCATCTGCCCAAA 60.680 57.895 0.00 0.00 40.16 3.28
2553 3124 2.044650 GAGCTGCCATCTGCCCAA 60.045 61.111 0.00 0.00 40.16 4.12
2554 3125 3.332385 TGAGCTGCCATCTGCCCA 61.332 61.111 0.00 0.00 40.16 5.36
2555 3126 2.827642 GTGAGCTGCCATCTGCCC 60.828 66.667 0.00 0.00 40.16 5.36
2556 3127 2.045634 TGTGAGCTGCCATCTGCC 60.046 61.111 0.00 0.00 40.16 4.85
2557 3128 1.376942 AGTGTGAGCTGCCATCTGC 60.377 57.895 0.00 0.00 41.77 4.26
2558 3129 0.321387 ACAGTGTGAGCTGCCATCTG 60.321 55.000 0.00 16.17 39.96 2.90
2559 3130 0.036577 GACAGTGTGAGCTGCCATCT 60.037 55.000 0.00 0.00 39.96 2.90
2560 3131 0.321034 TGACAGTGTGAGCTGCCATC 60.321 55.000 0.00 0.00 39.96 3.51
2561 3132 0.321387 CTGACAGTGTGAGCTGCCAT 60.321 55.000 0.00 0.00 39.96 4.40
2562 3133 1.070275 CTGACAGTGTGAGCTGCCA 59.930 57.895 0.00 0.00 39.96 4.92
2563 3134 0.669932 CTCTGACAGTGTGAGCTGCC 60.670 60.000 4.66 0.00 39.96 4.85
2564 3135 0.033228 ACTCTGACAGTGTGAGCTGC 59.967 55.000 9.31 0.00 39.96 5.25
2565 3136 2.522836 AACTCTGACAGTGTGAGCTG 57.477 50.000 10.76 3.25 41.92 4.24
2566 3137 3.639094 AGTTAACTCTGACAGTGTGAGCT 59.361 43.478 10.76 8.06 34.56 4.09
2567 3138 3.983741 AGTTAACTCTGACAGTGTGAGC 58.016 45.455 10.76 5.92 34.56 4.26
2580 3151 1.025113 GCCCGGGCAAGAGTTAACTC 61.025 60.000 40.73 25.24 41.02 3.01
2581 3152 1.002502 GCCCGGGCAAGAGTTAACT 60.003 57.895 40.73 8.13 41.49 2.24
2582 3153 1.002502 AGCCCGGGCAAGAGTTAAC 60.003 57.895 45.13 14.03 44.88 2.01
2583 3154 1.002624 CAGCCCGGGCAAGAGTTAA 60.003 57.895 45.13 0.00 44.88 2.01
2584 3155 2.668632 CAGCCCGGGCAAGAGTTA 59.331 61.111 45.13 0.00 44.88 2.24
2587 3158 4.809496 ATGCAGCCCGGGCAAGAG 62.809 66.667 45.13 30.97 45.60 2.85
2588 3159 4.365111 AATGCAGCCCGGGCAAGA 62.365 61.111 45.13 28.52 45.60 3.02
2589 3160 3.830192 GAATGCAGCCCGGGCAAG 61.830 66.667 45.13 35.95 45.60 4.01
2590 3161 4.675161 TGAATGCAGCCCGGGCAA 62.675 61.111 45.13 30.67 45.60 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.