Multiple sequence alignment - TraesCS6A01G360200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G360200 chr6A 100.000 4352 0 0 1 4352 591344158 591339807 0.000000e+00 8037.0
1 TraesCS6A01G360200 chr6A 95.146 103 5 0 1683 1785 591342381 591342279 3.480000e-36 163.0
2 TraesCS6A01G360200 chr6A 95.146 103 5 0 1778 1880 591342476 591342374 3.480000e-36 163.0
3 TraesCS6A01G360200 chr6D 94.378 2490 96 15 895 3352 441918369 441915892 0.000000e+00 3783.0
4 TraesCS6A01G360200 chr6D 92.290 869 67 0 3376 4244 331252387 331251519 0.000000e+00 1234.0
5 TraesCS6A01G360200 chr6D 81.162 499 61 22 148 618 441920201 441919708 1.910000e-98 370.0
6 TraesCS6A01G360200 chr6D 97.087 103 3 0 1683 1785 441917494 441917392 1.610000e-39 174.0
7 TraesCS6A01G360200 chr6D 96.117 103 4 0 1778 1880 441917589 441917487 7.490000e-38 169.0
8 TraesCS6A01G360200 chr6D 89.381 113 6 3 585 691 441919710 441919598 2.110000e-28 137.0
9 TraesCS6A01G360200 chr6B 92.621 1423 76 14 1975 3369 667963967 667962546 0.000000e+00 2019.0
10 TraesCS6A01G360200 chr6B 89.249 586 33 12 854 1411 667964854 667964271 0.000000e+00 706.0
11 TraesCS6A01G360200 chr6B 83.165 297 39 9 437 728 667965220 667964930 1.200000e-65 261.0
12 TraesCS6A01G360200 chr6B 91.257 183 8 4 1606 1785 667964206 667964029 4.350000e-60 243.0
13 TraesCS6A01G360200 chr6B 96.528 144 4 1 1 144 204659408 204659550 2.020000e-58 237.0
14 TraesCS6A01G360200 chr5D 92.203 885 59 7 3377 4256 454019858 454020737 0.000000e+00 1243.0
15 TraesCS6A01G360200 chr5D 92.263 866 61 5 3374 4237 438062323 438061462 0.000000e+00 1223.0
16 TraesCS6A01G360200 chr5D 91.506 883 68 6 3374 4255 425455187 425454311 0.000000e+00 1208.0
17 TraesCS6A01G360200 chr7D 91.986 886 68 1 3372 4257 422836910 422837792 0.000000e+00 1240.0
18 TraesCS6A01G360200 chr7D 91.723 882 68 5 3375 4255 477407893 477407016 0.000000e+00 1219.0
19 TraesCS6A01G360200 chr7D 91.695 879 68 5 3374 4252 38668857 38669730 0.000000e+00 1214.0
20 TraesCS6A01G360200 chr2D 90.611 884 79 4 3375 4258 545948127 545947248 0.000000e+00 1170.0
21 TraesCS6A01G360200 chr3A 90.449 890 79 5 3371 4259 674468948 674469832 0.000000e+00 1168.0
22 TraesCS6A01G360200 chr3A 97.203 143 4 0 1 143 708188790 708188932 4.350000e-60 243.0
23 TraesCS6A01G360200 chr5A 97.260 146 4 0 1 146 348352136 348351991 9.350000e-62 248.0
24 TraesCS6A01G360200 chr5A 93.711 159 10 0 1 159 330753242 330753084 5.620000e-59 239.0
25 TraesCS6A01G360200 chr1A 97.260 146 4 0 1 146 450062588 450062443 9.350000e-62 248.0
26 TraesCS6A01G360200 chr1A 94.479 163 6 3 1 162 584553218 584553378 9.350000e-62 248.0
27 TraesCS6A01G360200 chr1A 96.622 148 5 0 1 148 172196050 172195903 3.360000e-61 246.0
28 TraesCS6A01G360200 chr1A 93.293 164 10 1 1 163 264245456 264245293 1.560000e-59 241.0
29 TraesCS6A01G360200 chr4A 94.937 158 7 1 1 157 177233714 177233871 3.360000e-61 246.0
30 TraesCS6A01G360200 chr2A 85.897 78 10 1 353 430 573334698 573334622 1.000000e-11 82.4
31 TraesCS6A01G360200 chr4D 84.416 77 12 0 372 448 270610335 270610259 4.670000e-10 76.8
32 TraesCS6A01G360200 chr4D 85.484 62 5 3 353 412 281210770 281210829 1.310000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G360200 chr6A 591339807 591344158 4351 True 2787.666667 8037 96.764 1 4352 3 chr6A.!!$R1 4351
1 TraesCS6A01G360200 chr6D 331251519 331252387 868 True 1234.000000 1234 92.290 3376 4244 1 chr6D.!!$R1 868
2 TraesCS6A01G360200 chr6D 441915892 441920201 4309 True 926.600000 3783 91.625 148 3352 5 chr6D.!!$R2 3204
3 TraesCS6A01G360200 chr6B 667962546 667965220 2674 True 807.250000 2019 89.073 437 3369 4 chr6B.!!$R1 2932
4 TraesCS6A01G360200 chr5D 454019858 454020737 879 False 1243.000000 1243 92.203 3377 4256 1 chr5D.!!$F1 879
5 TraesCS6A01G360200 chr5D 438061462 438062323 861 True 1223.000000 1223 92.263 3374 4237 1 chr5D.!!$R2 863
6 TraesCS6A01G360200 chr5D 425454311 425455187 876 True 1208.000000 1208 91.506 3374 4255 1 chr5D.!!$R1 881
7 TraesCS6A01G360200 chr7D 422836910 422837792 882 False 1240.000000 1240 91.986 3372 4257 1 chr7D.!!$F2 885
8 TraesCS6A01G360200 chr7D 477407016 477407893 877 True 1219.000000 1219 91.723 3375 4255 1 chr7D.!!$R1 880
9 TraesCS6A01G360200 chr7D 38668857 38669730 873 False 1214.000000 1214 91.695 3374 4252 1 chr7D.!!$F1 878
10 TraesCS6A01G360200 chr2D 545947248 545948127 879 True 1170.000000 1170 90.611 3375 4258 1 chr2D.!!$R1 883
11 TraesCS6A01G360200 chr3A 674468948 674469832 884 False 1168.000000 1168 90.449 3371 4259 1 chr3A.!!$F1 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.035439 AGATCCGCCGGTTTTGACAT 60.035 50.0 1.63 0.00 0.00 3.06 F
143 144 0.110373 GCCGGTTTTGACATCGACAC 60.110 55.0 1.90 0.00 0.00 3.67 F
165 166 0.179045 GCGAAGACACCTATGCCCAT 60.179 55.0 0.00 0.00 0.00 4.00 F
363 364 0.250901 AAAGACGCAAGGGCAGTCAT 60.251 50.0 11.83 1.07 42.20 3.06 F
1241 2425 0.179084 TGCTAAATTCGCGGCTAGCT 60.179 50.0 15.72 0.00 45.59 3.32 F
2411 3601 0.386838 GCACCAAAGCAGCTTGACTT 59.613 50.0 8.88 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 2411 0.529992 GGTGTAGCTAGCCGCGAATT 60.530 55.000 12.13 0.00 45.59 2.17 R
1233 2417 0.807667 CTGCTTGGTGTAGCTAGCCG 60.808 60.000 12.13 5.13 41.76 5.52 R
1241 2425 1.079405 GCGCCTACTGCTTGGTGTA 60.079 57.895 0.00 0.00 38.05 2.90 R
2293 3483 0.452184 ATGACGTGATCGAAGCTCGT 59.548 50.000 15.40 15.40 41.35 4.18 R
2734 3927 0.973632 TGCCAAAAGAGAGCCGACTA 59.026 50.000 0.00 0.00 0.00 2.59 R
3635 4863 0.035317 TCAGCGCTGGTGTCAAGAAT 59.965 50.000 35.36 0.00 32.43 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.992476 ATCAAGCAGGACGTAGGGT 58.008 52.632 0.00 0.00 0.00 4.34
19 20 1.276622 ATCAAGCAGGACGTAGGGTT 58.723 50.000 0.00 0.00 0.00 4.11
20 21 1.053424 TCAAGCAGGACGTAGGGTTT 58.947 50.000 0.00 0.00 0.00 3.27
21 22 1.418637 TCAAGCAGGACGTAGGGTTTT 59.581 47.619 0.00 0.00 0.00 2.43
22 23 2.633967 TCAAGCAGGACGTAGGGTTTTA 59.366 45.455 0.00 0.00 0.00 1.52
23 24 2.740447 CAAGCAGGACGTAGGGTTTTAC 59.260 50.000 0.00 0.00 0.00 2.01
24 25 1.277273 AGCAGGACGTAGGGTTTTACC 59.723 52.381 0.00 0.00 37.60 2.85
25 26 1.277273 GCAGGACGTAGGGTTTTACCT 59.723 52.381 0.00 0.00 44.75 3.08
26 27 2.676176 GCAGGACGTAGGGTTTTACCTC 60.676 54.545 0.00 0.00 42.09 3.85
27 28 2.093816 CAGGACGTAGGGTTTTACCTCC 60.094 54.545 0.00 0.00 42.09 4.30
28 29 1.901833 GGACGTAGGGTTTTACCTCCA 59.098 52.381 0.00 0.00 42.09 3.86
29 30 2.502947 GGACGTAGGGTTTTACCTCCAT 59.497 50.000 0.00 0.00 42.09 3.41
30 31 3.431346 GGACGTAGGGTTTTACCTCCATC 60.431 52.174 0.00 0.00 42.09 3.51
31 32 3.175594 ACGTAGGGTTTTACCTCCATCA 58.824 45.455 0.00 0.00 42.09 3.07
32 33 3.583966 ACGTAGGGTTTTACCTCCATCAA 59.416 43.478 0.00 0.00 42.09 2.57
33 34 4.189231 CGTAGGGTTTTACCTCCATCAAG 58.811 47.826 0.00 0.00 42.09 3.02
34 35 4.081309 CGTAGGGTTTTACCTCCATCAAGA 60.081 45.833 0.00 0.00 42.09 3.02
35 36 4.576330 AGGGTTTTACCTCCATCAAGAG 57.424 45.455 0.00 0.00 38.64 2.85
41 42 2.507944 CTCCATCAAGAGGGCCCG 59.492 66.667 18.44 1.05 31.15 6.13
42 43 2.040442 TCCATCAAGAGGGCCCGA 59.960 61.111 18.44 8.04 31.15 5.14
43 44 1.615124 TCCATCAAGAGGGCCCGAA 60.615 57.895 18.44 1.01 31.15 4.30
44 45 0.988145 TCCATCAAGAGGGCCCGAAT 60.988 55.000 18.44 2.76 31.15 3.34
45 46 0.536006 CCATCAAGAGGGCCCGAATC 60.536 60.000 18.44 9.08 0.00 2.52
46 47 0.471617 CATCAAGAGGGCCCGAATCT 59.528 55.000 18.44 11.71 0.00 2.40
47 48 0.471617 ATCAAGAGGGCCCGAATCTG 59.528 55.000 18.44 10.99 0.00 2.90
48 49 1.153086 CAAGAGGGCCCGAATCTGG 60.153 63.158 18.44 7.96 0.00 3.86
59 60 2.612212 CCCGAATCTGGGTAAAACATCG 59.388 50.000 2.65 0.00 44.76 3.84
60 61 3.267483 CCGAATCTGGGTAAAACATCGT 58.733 45.455 0.00 0.00 0.00 3.73
61 62 3.063452 CCGAATCTGGGTAAAACATCGTG 59.937 47.826 0.00 0.00 0.00 4.35
62 63 3.682858 CGAATCTGGGTAAAACATCGTGT 59.317 43.478 0.00 0.00 0.00 4.49
63 64 4.153475 CGAATCTGGGTAAAACATCGTGTT 59.847 41.667 0.00 0.00 43.41 3.32
64 65 5.622770 AATCTGGGTAAAACATCGTGTTC 57.377 39.130 4.28 0.00 40.14 3.18
65 66 3.404899 TCTGGGTAAAACATCGTGTTCC 58.595 45.455 4.28 2.91 40.14 3.62
66 67 3.071892 TCTGGGTAAAACATCGTGTTCCT 59.928 43.478 4.28 0.00 40.14 3.36
67 68 3.818773 CTGGGTAAAACATCGTGTTCCTT 59.181 43.478 4.28 0.44 40.14 3.36
68 69 4.970711 TGGGTAAAACATCGTGTTCCTTA 58.029 39.130 4.28 0.00 40.14 2.69
69 70 4.756135 TGGGTAAAACATCGTGTTCCTTAC 59.244 41.667 12.26 12.26 40.14 2.34
70 71 4.154737 GGGTAAAACATCGTGTTCCTTACC 59.845 45.833 21.30 21.30 44.78 2.85
71 72 4.999311 GGTAAAACATCGTGTTCCTTACCT 59.001 41.667 21.69 2.54 43.54 3.08
72 73 5.121298 GGTAAAACATCGTGTTCCTTACCTC 59.879 44.000 21.69 9.20 43.54 3.85
73 74 3.329929 AACATCGTGTTCCTTACCTCC 57.670 47.619 0.00 0.00 35.27 4.30
74 75 2.537143 ACATCGTGTTCCTTACCTCCT 58.463 47.619 0.00 0.00 0.00 3.69
75 76 2.233922 ACATCGTGTTCCTTACCTCCTG 59.766 50.000 0.00 0.00 0.00 3.86
76 77 2.005370 TCGTGTTCCTTACCTCCTGT 57.995 50.000 0.00 0.00 0.00 4.00
77 78 2.322658 TCGTGTTCCTTACCTCCTGTT 58.677 47.619 0.00 0.00 0.00 3.16
78 79 3.499338 TCGTGTTCCTTACCTCCTGTTA 58.501 45.455 0.00 0.00 0.00 2.41
79 80 3.256631 TCGTGTTCCTTACCTCCTGTTAC 59.743 47.826 0.00 0.00 0.00 2.50
80 81 3.615834 CGTGTTCCTTACCTCCTGTTACC 60.616 52.174 0.00 0.00 0.00 2.85
81 82 3.325716 GTGTTCCTTACCTCCTGTTACCA 59.674 47.826 0.00 0.00 0.00 3.25
82 83 4.019591 GTGTTCCTTACCTCCTGTTACCAT 60.020 45.833 0.00 0.00 0.00 3.55
83 84 5.188359 GTGTTCCTTACCTCCTGTTACCATA 59.812 44.000 0.00 0.00 0.00 2.74
84 85 5.188359 TGTTCCTTACCTCCTGTTACCATAC 59.812 44.000 0.00 0.00 0.00 2.39
85 86 3.956199 TCCTTACCTCCTGTTACCATACG 59.044 47.826 0.00 0.00 0.00 3.06
86 87 3.069158 CCTTACCTCCTGTTACCATACGG 59.931 52.174 0.00 0.00 38.77 4.02
87 88 0.828677 ACCTCCTGTTACCATACGGC 59.171 55.000 0.00 0.00 34.57 5.68
88 89 0.106149 CCTCCTGTTACCATACGGCC 59.894 60.000 0.00 0.00 34.57 6.13
89 90 1.120530 CTCCTGTTACCATACGGCCT 58.879 55.000 0.00 0.00 34.57 5.19
90 91 2.313317 CTCCTGTTACCATACGGCCTA 58.687 52.381 0.00 0.00 34.57 3.93
91 92 2.296471 CTCCTGTTACCATACGGCCTAG 59.704 54.545 0.00 0.00 34.57 3.02
92 93 2.091720 TCCTGTTACCATACGGCCTAGA 60.092 50.000 0.00 0.00 34.57 2.43
93 94 2.035576 CCTGTTACCATACGGCCTAGAC 59.964 54.545 0.00 0.00 34.57 2.59
94 95 1.677576 TGTTACCATACGGCCTAGACG 59.322 52.381 0.00 5.43 41.40 4.18
95 96 0.670162 TTACCATACGGCCTAGACGC 59.330 55.000 0.00 0.00 37.73 5.19
96 97 0.466007 TACCATACGGCCTAGACGCA 60.466 55.000 0.00 0.00 37.73 5.24
97 98 1.299926 CCATACGGCCTAGACGCAC 60.300 63.158 0.00 0.00 37.73 5.34
98 99 1.435925 CATACGGCCTAGACGCACA 59.564 57.895 0.00 0.00 37.73 4.57
99 100 0.595053 CATACGGCCTAGACGCACAG 60.595 60.000 0.00 0.00 37.73 3.66
100 101 1.035932 ATACGGCCTAGACGCACAGT 61.036 55.000 0.00 0.00 37.73 3.55
101 102 1.246056 TACGGCCTAGACGCACAGTT 61.246 55.000 0.00 0.00 37.73 3.16
102 103 1.805945 CGGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
103 104 1.805945 GGCCTAGACGCACAGTTCG 60.806 63.158 0.00 0.00 0.00 3.95
104 105 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
105 106 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
106 107 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
107 108 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
108 109 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
109 110 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
111 112 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
112 113 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
113 114 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
114 115 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
115 116 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
116 117 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
120 121 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
121 122 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
122 123 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
123 124 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
124 125 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
125 126 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
126 127 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
127 128 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
128 129 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
129 130 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
131 132 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
132 133 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
133 134 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
134 135 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
135 136 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
136 137 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
137 138 0.035439 AGATCCGCCGGTTTTGACAT 60.035 50.000 1.63 0.00 0.00 3.06
138 139 0.377203 GATCCGCCGGTTTTGACATC 59.623 55.000 1.63 0.00 0.00 3.06
139 140 1.366111 ATCCGCCGGTTTTGACATCG 61.366 55.000 1.63 0.00 0.00 3.84
140 141 2.030401 CCGCCGGTTTTGACATCGA 61.030 57.895 1.90 0.00 0.00 3.59
141 142 1.131826 CGCCGGTTTTGACATCGAC 59.868 57.895 1.90 0.00 0.00 4.20
142 143 1.561717 CGCCGGTTTTGACATCGACA 61.562 55.000 1.90 0.00 0.00 4.35
143 144 0.110373 GCCGGTTTTGACATCGACAC 60.110 55.000 1.90 0.00 0.00 3.67
144 145 0.515564 CCGGTTTTGACATCGACACC 59.484 55.000 0.00 0.00 0.00 4.16
145 146 1.222300 CGGTTTTGACATCGACACCA 58.778 50.000 5.50 0.00 31.06 4.17
146 147 1.194547 CGGTTTTGACATCGACACCAG 59.805 52.381 5.50 0.00 31.06 4.00
156 157 2.022129 CGACACCAGCGAAGACACC 61.022 63.158 0.00 0.00 0.00 4.16
157 158 1.367840 GACACCAGCGAAGACACCT 59.632 57.895 0.00 0.00 0.00 4.00
158 159 0.601558 GACACCAGCGAAGACACCTA 59.398 55.000 0.00 0.00 0.00 3.08
165 166 0.179045 GCGAAGACACCTATGCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
170 171 4.573900 GAAGACACCTATGCCCATATCTG 58.426 47.826 0.00 0.00 0.00 2.90
239 240 3.067106 CCTGCAATGTTCGTACACTCTT 58.933 45.455 0.00 0.00 37.03 2.85
240 241 3.498397 CCTGCAATGTTCGTACACTCTTT 59.502 43.478 0.00 0.00 37.03 2.52
253 254 1.067495 CACTCTTTGGACGAGGAGGAC 60.067 57.143 4.05 0.00 32.83 3.85
261 262 0.464013 GACGAGGAGGACGAGGATGA 60.464 60.000 0.00 0.00 34.70 2.92
262 263 0.748729 ACGAGGAGGACGAGGATGAC 60.749 60.000 0.00 0.00 34.70 3.06
263 264 0.748367 CGAGGAGGACGAGGATGACA 60.748 60.000 0.00 0.00 0.00 3.58
264 265 1.475403 GAGGAGGACGAGGATGACAA 58.525 55.000 0.00 0.00 0.00 3.18
280 281 4.875713 AATGCCGCATCCGACCCC 62.876 66.667 6.27 0.00 36.29 4.95
285 286 2.727392 CCGCATCCGACCCCTACAA 61.727 63.158 0.00 0.00 36.29 2.41
289 290 1.486211 CATCCGACCCCTACAACTCT 58.514 55.000 0.00 0.00 0.00 3.24
305 306 1.410882 ACTCTAGGAGCGAGCAAATCC 59.589 52.381 0.00 0.00 32.04 3.01
311 312 2.100991 GCGAGCAAATCCGCCTTG 59.899 61.111 0.00 0.00 45.06 3.61
322 323 4.025401 CGCCTTGACCCGTGTTGC 62.025 66.667 0.00 0.00 0.00 4.17
329 330 1.300697 GACCCGTGTTGCGTCTTCT 60.301 57.895 0.00 0.00 39.32 2.85
346 347 0.798159 TCTAGCGCTACGACGACAAA 59.202 50.000 14.45 0.00 34.06 2.83
347 348 1.181001 CTAGCGCTACGACGACAAAG 58.819 55.000 14.45 0.00 34.06 2.77
348 349 0.798159 TAGCGCTACGACGACAAAGA 59.202 50.000 14.45 0.00 34.06 2.52
349 350 0.728466 AGCGCTACGACGACAAAGAC 60.728 55.000 8.99 0.00 34.06 3.01
350 351 1.971336 CGCTACGACGACAAAGACG 59.029 57.895 0.00 0.00 34.06 4.18
351 352 1.694962 GCTACGACGACAAAGACGC 59.305 57.895 0.00 0.00 32.99 5.19
353 354 1.401530 CTACGACGACAAAGACGCAA 58.598 50.000 0.00 0.00 32.99 4.85
356 357 1.860078 GACGACAAAGACGCAAGGG 59.140 57.895 0.00 0.00 46.39 3.95
357 358 2.171489 GACGACAAAGACGCAAGGGC 62.171 60.000 0.00 0.00 46.39 5.19
360 361 1.152963 ACAAAGACGCAAGGGCAGT 60.153 52.632 0.00 0.00 46.39 4.40
361 362 1.166531 ACAAAGACGCAAGGGCAGTC 61.167 55.000 0.00 0.00 46.39 3.51
363 364 0.250901 AAAGACGCAAGGGCAGTCAT 60.251 50.000 11.83 1.07 42.20 3.06
369 380 1.679977 CAAGGGCAGTCATGGGTGG 60.680 63.158 0.00 0.00 0.00 4.61
418 429 6.704310 AGAACATGCCAATTTTTGCTATTCT 58.296 32.000 0.00 0.00 0.00 2.40
419 430 6.592607 AGAACATGCCAATTTTTGCTATTCTG 59.407 34.615 0.00 0.00 0.00 3.02
430 441 9.793252 AATTTTTGCTATTCTGATGACATGTAC 57.207 29.630 0.00 0.00 0.00 2.90
440 462 5.049129 TCTGATGACATGTACGATGAGCTAG 60.049 44.000 0.00 0.00 0.00 3.42
445 467 3.066900 ACATGTACGATGAGCTAGGTGTC 59.933 47.826 0.00 0.00 0.00 3.67
456 478 5.941788 TGAGCTAGGTGTCTGATCTACATA 58.058 41.667 0.00 0.00 0.00 2.29
464 486 6.015010 AGGTGTCTGATCTACATAACCTATGC 60.015 42.308 5.02 0.00 39.79 3.14
472 494 5.526115 TCTACATAACCTATGCGTGCTTAC 58.474 41.667 0.00 0.00 39.79 2.34
473 495 3.463944 ACATAACCTATGCGTGCTTACC 58.536 45.455 0.00 0.00 39.79 2.85
485 507 2.159572 CGTGCTTACCTTATGTTGCACC 60.160 50.000 9.77 0.00 45.35 5.01
496 518 5.589855 CCTTATGTTGCACCAGAATGTATGA 59.410 40.000 0.00 0.00 0.00 2.15
520 542 9.650714 TGAATTTGAGGATTTGATATGAAGGAT 57.349 29.630 0.00 0.00 0.00 3.24
521 543 9.909644 GAATTTGAGGATTTGATATGAAGGATG 57.090 33.333 0.00 0.00 0.00 3.51
535 557 9.764363 GATATGAAGGATGTAATTGTAGACACA 57.236 33.333 0.00 0.00 0.00 3.72
540 562 7.004555 AGGATGTAATTGTAGACACAGACAA 57.995 36.000 0.00 0.00 39.74 3.18
556 578 1.024579 ACAATTGACGGGTCATCGGC 61.025 55.000 13.59 0.00 39.64 5.54
558 580 2.191786 AATTGACGGGTCATCGGCCA 62.192 55.000 2.24 0.00 39.64 5.36
564 586 2.662596 GGTCATCGGCCACTGTCA 59.337 61.111 2.24 0.00 0.00 3.58
565 587 1.003839 GGTCATCGGCCACTGTCAA 60.004 57.895 2.24 0.00 0.00 3.18
566 588 0.392998 GGTCATCGGCCACTGTCAAT 60.393 55.000 2.24 0.00 0.00 2.57
568 590 0.612744 TCATCGGCCACTGTCAATGA 59.387 50.000 2.24 0.00 0.00 2.57
576 598 2.165167 CCACTGTCAATGAACATGCCT 58.835 47.619 0.00 0.00 0.00 4.75
577 599 3.346315 CCACTGTCAATGAACATGCCTA 58.654 45.455 0.00 0.00 0.00 3.93
579 601 3.376234 CACTGTCAATGAACATGCCTAGG 59.624 47.826 3.67 3.67 0.00 3.02
612 669 7.255104 GCGGATGTTTGAGGTGATATTTAATGA 60.255 37.037 0.00 0.00 0.00 2.57
628 690 5.925506 TTAATGAGTCCGGTTGTAGATGA 57.074 39.130 0.00 0.00 0.00 2.92
630 692 7.591421 TTAATGAGTCCGGTTGTAGATGATA 57.409 36.000 0.00 0.00 0.00 2.15
637 699 8.645814 AGTCCGGTTGTAGATGATATATTGTA 57.354 34.615 0.00 0.00 0.00 2.41
691 753 3.367910 GGGCCGCAAATCATAAGTTGAAA 60.368 43.478 0.00 0.00 38.03 2.69
693 755 4.688413 GGCCGCAAATCATAAGTTGAAAAA 59.312 37.500 0.00 0.00 38.03 1.94
704 766 9.778741 ATCATAAGTTGAAAAACTACTGACTCA 57.221 29.630 5.62 0.00 38.03 3.41
712 774 7.155328 TGAAAAACTACTGACTCAATCTCTCC 58.845 38.462 0.00 0.00 0.00 3.71
728 790 3.260884 TCTCTCCGAAGTGCTTATTTGGT 59.739 43.478 0.00 0.00 33.52 3.67
729 791 3.334691 TCTCCGAAGTGCTTATTTGGTG 58.665 45.455 0.00 0.00 33.52 4.17
730 792 1.810151 TCCGAAGTGCTTATTTGGTGC 59.190 47.619 0.00 0.00 33.52 5.01
732 794 2.164219 CCGAAGTGCTTATTTGGTGCAT 59.836 45.455 0.00 0.00 39.00 3.96
733 795 3.376859 CCGAAGTGCTTATTTGGTGCATA 59.623 43.478 0.00 0.00 39.00 3.14
734 796 4.342772 CGAAGTGCTTATTTGGTGCATAC 58.657 43.478 0.00 0.00 39.00 2.39
753 823 2.058798 ACGTGCGTTCATACAAGTGAG 58.941 47.619 0.00 0.00 0.00 3.51
754 824 2.058798 CGTGCGTTCATACAAGTGAGT 58.941 47.619 0.00 0.00 0.00 3.41
756 826 1.798223 TGCGTTCATACAAGTGAGTGC 59.202 47.619 0.00 0.00 33.39 4.40
762 1919 1.136252 CATACAAGTGAGTGCGTGTGC 60.136 52.381 0.00 0.00 43.20 4.57
773 1930 1.793613 GCGTGTGCATTTGAGCGTC 60.794 57.895 0.00 0.00 42.15 5.19
924 2081 5.128499 CCTCATGGCAATACAATACCCAAAA 59.872 40.000 0.00 0.00 0.00 2.44
1227 2411 5.175859 CCCGAAGTCAGTTTTAGATGCTAA 58.824 41.667 0.00 0.00 0.00 3.09
1231 2415 7.905493 CCGAAGTCAGTTTTAGATGCTAAATTC 59.095 37.037 0.00 0.00 0.00 2.17
1233 2417 6.776094 AGTCAGTTTTAGATGCTAAATTCGC 58.224 36.000 0.00 0.00 0.00 4.70
1241 2425 0.179084 TGCTAAATTCGCGGCTAGCT 60.179 50.000 15.72 0.00 45.59 3.32
1428 2613 1.481363 AGAAGGTAAAGCGTAGGAGCC 59.519 52.381 0.00 0.00 38.01 4.70
1487 2672 4.851558 CACAAGCCGATTTTACTGCTTTAC 59.148 41.667 0.00 0.00 41.83 2.01
1511 2696 3.660501 TCTTCTCTGCTTAAAGCGTCA 57.339 42.857 0.00 0.00 46.26 4.35
1512 2697 3.579709 TCTTCTCTGCTTAAAGCGTCAG 58.420 45.455 0.00 0.00 46.26 3.51
1518 2703 3.433274 TCTGCTTAAAGCGTCAGTGAATG 59.567 43.478 0.00 0.00 46.26 2.67
1531 2716 7.223582 AGCGTCAGTGAATGAATCTATGTAAAG 59.776 37.037 0.00 0.00 40.43 1.85
1551 2736 8.447833 TGTAAAGTGACGGCTTAAATTATCTTG 58.552 33.333 0.00 0.00 0.00 3.02
1705 2893 9.903682 CTGAACTTTGAAATCTAATGTCAATGT 57.096 29.630 5.85 5.85 39.78 2.71
1806 2994 7.281774 TCTCAAATCTAATGTCAATGAGAAGGC 59.718 37.037 0.00 0.00 38.94 4.35
2004 3194 4.459337 AGGCACTGTCCTTTAACTTAATGC 59.541 41.667 0.00 0.00 37.18 3.56
2008 3198 7.362574 GGCACTGTCCTTTAACTTAATGCAATA 60.363 37.037 0.00 0.00 0.00 1.90
2137 3327 2.410939 CATCTGGTGCGATCCTACATG 58.589 52.381 0.00 0.00 0.00 3.21
2161 3351 3.476552 CAAGGAGCAACTAGAAACACCA 58.523 45.455 0.00 0.00 0.00 4.17
2293 3483 2.040278 CCAGAGGGATGACAAGGTTTCA 59.960 50.000 0.00 0.00 35.59 2.69
2386 3576 8.596380 GCTATCTACTTGTTGTTGATGTACTTC 58.404 37.037 1.85 1.85 40.37 3.01
2411 3601 0.386838 GCACCAAAGCAGCTTGACTT 59.613 50.000 8.88 0.00 0.00 3.01
2438 3631 9.941325 GAATGATCTTCTCACCTTATATGATGT 57.059 33.333 0.00 0.00 36.48 3.06
2469 3662 3.611986 CAGAAGAACTTCATCGAGAGCAC 59.388 47.826 15.43 0.00 41.84 4.40
2525 3718 6.405278 TTGTACAGTGATGATATCGGATGT 57.595 37.500 0.00 0.00 0.00 3.06
2530 3723 7.019774 ACAGTGATGATATCGGATGTTTTTG 57.980 36.000 0.00 0.00 0.00 2.44
2538 3731 1.801771 TCGGATGTTTTTGCTGTACCG 59.198 47.619 0.00 0.00 40.36 4.02
2546 3739 4.142359 TGTTTTTGCTGTACCGTTGACAAT 60.142 37.500 0.00 0.00 0.00 2.71
2549 3742 3.120321 TGCTGTACCGTTGACAATTCT 57.880 42.857 0.00 0.00 0.00 2.40
2553 3746 5.163602 TGCTGTACCGTTGACAATTCTTTTT 60.164 36.000 0.00 0.00 0.00 1.94
2607 3800 1.175983 TGCCCGAAAGCCAAACGATT 61.176 50.000 0.00 0.00 0.00 3.34
2661 3854 5.068591 GGTTTGTGTTTAACCCTCTTGACAT 59.931 40.000 0.00 0.00 39.29 3.06
2740 3933 0.537188 AACAGGCCATGAGTAGTCGG 59.463 55.000 5.01 0.00 0.00 4.79
2761 3954 2.507484 CTCTCTTTTGGCATGACACCA 58.493 47.619 0.00 0.00 34.65 4.17
2896 4089 3.118629 TGACACCACAGCCATCTCTTATC 60.119 47.826 0.00 0.00 0.00 1.75
3033 4232 3.193691 GCTTAAGCCCCTCTTTTCCTTTC 59.806 47.826 17.00 0.00 36.25 2.62
3052 4251 0.807667 CCACATCCACTAGCTCACGC 60.808 60.000 0.00 0.00 0.00 5.34
3055 4254 0.529337 CATCCACTAGCTCACGCCTG 60.529 60.000 0.00 0.00 36.60 4.85
3085 4284 5.189736 TCATGTCCATTACAGGAGCTTAACT 59.810 40.000 0.00 0.00 43.63 2.24
3094 4293 1.153349 GAGCTTAACTGGCCCTCGG 60.153 63.158 0.00 0.00 0.00 4.63
3207 4406 1.954362 GCAGCATCTCGAGTCCCAGT 61.954 60.000 13.13 0.00 0.00 4.00
3214 4413 2.219325 CTCGAGTCCCAGTGTCAGCC 62.219 65.000 3.62 0.00 0.00 4.85
3231 4431 1.137825 CCGAGAGTCTCCGACAAGC 59.862 63.158 14.61 0.00 34.60 4.01
3236 4436 0.108424 GAGTCTCCGACAAGCTGCAT 60.108 55.000 1.02 0.00 34.60 3.96
3241 4441 1.443194 CCGACAAGCTGCATTGTGC 60.443 57.895 17.81 0.00 43.32 4.57
3265 4487 5.983118 CGTGTAGGCTATCATGTTTGATGTA 59.017 40.000 0.00 0.00 42.60 2.29
3344 4568 5.796350 ACAATGGTGAATTAGTAGCGTTC 57.204 39.130 0.00 0.00 0.00 3.95
3354 4578 1.512926 AGTAGCGTTCACTTTGCCAG 58.487 50.000 0.00 0.00 0.00 4.85
3357 4581 0.463654 AGCGTTCACTTTGCCAGTCA 60.464 50.000 0.00 0.00 30.92 3.41
3369 4593 4.794278 TTGCCAGTCATAACTCGAGTAA 57.206 40.909 20.39 1.95 31.71 2.24
3374 4598 6.653320 TGCCAGTCATAACTCGAGTAAATTTT 59.347 34.615 20.39 4.26 31.71 1.82
3493 4721 5.008811 CACCTAGAGTATCCTAAGACAACCG 59.991 48.000 0.00 0.00 33.66 4.44
3508 4736 6.092955 AGACAACCGTAACACAAGAAGATA 57.907 37.500 0.00 0.00 0.00 1.98
3527 4755 1.976132 ATCCGGAGCCCTGTGTCATG 61.976 60.000 11.34 0.00 0.00 3.07
3564 4792 0.250901 GAAGACCCCTGCAGCAGAAA 60.251 55.000 24.90 0.00 32.44 2.52
3600 4828 4.756642 GTCACAAACAGGTCATCATCTTCA 59.243 41.667 0.00 0.00 0.00 3.02
3624 4852 1.155424 CGGTATAATTGCCGCCACGT 61.155 55.000 5.28 0.00 44.22 4.49
3635 4863 2.250939 CGCCACGTTGCTTCCTTCA 61.251 57.895 10.16 0.00 0.00 3.02
3703 4931 1.153647 CAACAGCCGTCGCCATCTA 60.154 57.895 0.00 0.00 34.57 1.98
3719 4947 3.181465 CCATCTATGGCTTTGAGTACCGT 60.181 47.826 0.00 0.00 41.75 4.83
3735 4963 1.489230 ACCGTGAAAAGTGTCCCTTCT 59.511 47.619 0.00 0.00 31.27 2.85
3759 4987 2.733956 AGGAAGAGAGCTCGAGTCATT 58.266 47.619 15.13 9.15 34.09 2.57
3760 4988 3.096092 AGGAAGAGAGCTCGAGTCATTT 58.904 45.455 15.13 8.54 34.09 2.32
3809 5037 1.577328 CGCACGGACAAAGCAGGATT 61.577 55.000 0.00 0.00 0.00 3.01
3812 5040 2.154462 CACGGACAAAGCAGGATTTCT 58.846 47.619 0.00 0.00 0.00 2.52
3840 5068 1.141449 CAGCGCAGAGGAAGGAGAG 59.859 63.158 11.47 0.00 0.00 3.20
3931 5159 1.833787 GAGGACCCAAACGGCCAGTA 61.834 60.000 2.24 0.00 33.26 2.74
4022 5250 0.108585 AGACGAAGGCAAAAGCCTCA 59.891 50.000 9.77 0.00 39.63 3.86
4056 5284 2.679930 CGGAGCCCGGAGAAACTTATTT 60.680 50.000 0.73 0.00 44.15 1.40
4060 5288 4.600062 AGCCCGGAGAAACTTATTTCAAT 58.400 39.130 0.73 0.00 45.78 2.57
4067 5295 6.555315 GGAGAAACTTATTTCAATGCGACAT 58.445 36.000 2.86 0.00 45.78 3.06
4069 5297 6.250819 AGAAACTTATTTCAATGCGACATCG 58.749 36.000 0.00 0.00 45.78 3.84
4114 5342 1.838077 CCTCAACCCTAACCCTACCAG 59.162 57.143 0.00 0.00 0.00 4.00
4124 5352 1.537889 CCCTACCAGACACCCACCA 60.538 63.158 0.00 0.00 0.00 4.17
4144 5372 1.301479 GCGAACAGACCCGAGGTTT 60.301 57.895 0.00 0.00 35.25 3.27
4248 5476 1.534175 CGCCTCGTGTGATCCTACTTC 60.534 57.143 0.00 0.00 0.00 3.01
4258 5486 1.400530 ATCCTACTTCTTCGGGGCGG 61.401 60.000 0.00 0.00 0.00 6.13
4259 5487 2.056223 CCTACTTCTTCGGGGCGGA 61.056 63.158 0.00 0.00 0.00 5.54
4260 5488 1.610554 CCTACTTCTTCGGGGCGGAA 61.611 60.000 0.00 0.00 0.00 4.30
4261 5489 0.179108 CTACTTCTTCGGGGCGGAAG 60.179 60.000 9.82 9.82 43.78 3.46
4262 5490 2.214920 ACTTCTTCGGGGCGGAAGT 61.215 57.895 14.17 0.00 43.10 3.01
4263 5491 1.003718 CTTCTTCGGGGCGGAAGTT 60.004 57.895 14.17 0.00 43.10 2.66
4264 5492 0.248289 CTTCTTCGGGGCGGAAGTTA 59.752 55.000 14.17 5.90 43.10 2.24
4265 5493 0.037046 TTCTTCGGGGCGGAAGTTAC 60.037 55.000 14.17 0.00 43.10 2.50
4266 5494 0.901580 TCTTCGGGGCGGAAGTTACT 60.902 55.000 14.17 0.00 43.10 2.24
4267 5495 0.459759 CTTCGGGGCGGAAGTTACTC 60.460 60.000 8.32 0.00 38.84 2.59
4268 5496 2.202703 CGGGGCGGAAGTTACTCG 60.203 66.667 0.00 0.00 0.00 4.18
4269 5497 2.976356 GGGGCGGAAGTTACTCGT 59.024 61.111 0.00 0.00 0.00 4.18
4270 5498 1.447314 GGGGCGGAAGTTACTCGTG 60.447 63.158 0.00 0.00 0.00 4.35
4271 5499 1.291272 GGGCGGAAGTTACTCGTGT 59.709 57.895 0.00 0.00 0.00 4.49
4272 5500 0.320160 GGGCGGAAGTTACTCGTGTT 60.320 55.000 0.00 0.00 0.00 3.32
4273 5501 1.505425 GGCGGAAGTTACTCGTGTTT 58.495 50.000 0.00 0.00 0.00 2.83
4274 5502 1.193874 GGCGGAAGTTACTCGTGTTTG 59.806 52.381 0.00 0.00 0.00 2.93
4275 5503 1.398071 GCGGAAGTTACTCGTGTTTGC 60.398 52.381 0.00 0.00 0.00 3.68
4276 5504 1.193874 CGGAAGTTACTCGTGTTTGCC 59.806 52.381 0.00 0.00 0.00 4.52
4277 5505 2.490991 GGAAGTTACTCGTGTTTGCCT 58.509 47.619 0.00 0.00 0.00 4.75
4278 5506 3.656559 GGAAGTTACTCGTGTTTGCCTA 58.343 45.455 0.00 0.00 0.00 3.93
4279 5507 3.431233 GGAAGTTACTCGTGTTTGCCTAC 59.569 47.826 0.00 0.00 0.00 3.18
4280 5508 4.304939 GAAGTTACTCGTGTTTGCCTACT 58.695 43.478 0.00 0.00 0.00 2.57
4281 5509 3.910648 AGTTACTCGTGTTTGCCTACTC 58.089 45.455 0.00 0.00 0.00 2.59
4282 5510 2.991866 GTTACTCGTGTTTGCCTACTCC 59.008 50.000 0.00 0.00 0.00 3.85
4283 5511 1.045407 ACTCGTGTTTGCCTACTCCA 58.955 50.000 0.00 0.00 0.00 3.86
4284 5512 1.270147 ACTCGTGTTTGCCTACTCCAC 60.270 52.381 0.00 0.00 0.00 4.02
4285 5513 2.150424 CGTGTTTGCCTACTCCACG 58.850 57.895 0.00 0.00 42.19 4.94
4286 5514 3.599412 GTGTTTGCCTACTCCACGA 57.401 52.632 0.00 0.00 0.00 4.35
4287 5515 1.145803 GTGTTTGCCTACTCCACGAC 58.854 55.000 0.00 0.00 0.00 4.34
4288 5516 0.319211 TGTTTGCCTACTCCACGACG 60.319 55.000 0.00 0.00 0.00 5.12
4289 5517 0.319297 GTTTGCCTACTCCACGACGT 60.319 55.000 0.00 0.00 0.00 4.34
4290 5518 0.390124 TTTGCCTACTCCACGACGTT 59.610 50.000 0.00 0.00 0.00 3.99
4291 5519 1.246649 TTGCCTACTCCACGACGTTA 58.753 50.000 0.00 0.00 0.00 3.18
4292 5520 1.466856 TGCCTACTCCACGACGTTAT 58.533 50.000 0.00 0.00 0.00 1.89
4293 5521 2.642427 TGCCTACTCCACGACGTTATA 58.358 47.619 0.00 0.00 0.00 0.98
4294 5522 3.016031 TGCCTACTCCACGACGTTATAA 58.984 45.455 0.00 0.00 0.00 0.98
4295 5523 3.181497 TGCCTACTCCACGACGTTATAAC 60.181 47.826 5.47 5.47 0.00 1.89
4296 5524 3.065925 GCCTACTCCACGACGTTATAACT 59.934 47.826 13.56 1.10 0.00 2.24
4297 5525 4.787882 GCCTACTCCACGACGTTATAACTC 60.788 50.000 13.56 8.94 0.00 3.01
4298 5526 3.395858 ACTCCACGACGTTATAACTCG 57.604 47.619 23.76 23.76 36.41 4.18
4299 5527 3.002791 ACTCCACGACGTTATAACTCGA 58.997 45.455 28.34 14.99 35.27 4.04
4300 5528 3.063180 ACTCCACGACGTTATAACTCGAG 59.937 47.826 28.34 23.33 35.27 4.04
4301 5529 3.002791 TCCACGACGTTATAACTCGAGT 58.997 45.455 28.34 13.58 35.27 4.18
4302 5530 4.180817 TCCACGACGTTATAACTCGAGTA 58.819 43.478 28.34 7.83 35.27 2.59
4303 5531 4.811024 TCCACGACGTTATAACTCGAGTAT 59.189 41.667 28.34 14.40 35.27 2.12
4304 5532 5.294306 TCCACGACGTTATAACTCGAGTATT 59.706 40.000 28.34 11.81 35.27 1.89
4305 5533 5.967674 CCACGACGTTATAACTCGAGTATTT 59.032 40.000 28.34 5.93 35.27 1.40
4306 5534 7.011016 TCCACGACGTTATAACTCGAGTATTTA 59.989 37.037 28.34 8.30 35.27 1.40
4307 5535 7.639850 CCACGACGTTATAACTCGAGTATTTAA 59.360 37.037 28.34 13.60 35.27 1.52
4308 5536 8.456797 CACGACGTTATAACTCGAGTATTTAAC 58.543 37.037 28.34 21.93 35.27 2.01
4309 5537 7.370836 ACGACGTTATAACTCGAGTATTTAACG 59.629 37.037 35.53 35.53 41.12 3.18
4310 5538 7.368750 ACGTTATAACTCGAGTATTTAACGC 57.631 36.000 36.23 19.42 40.20 4.84
4311 5539 6.966632 ACGTTATAACTCGAGTATTTAACGCA 59.033 34.615 36.23 15.10 40.20 5.24
4312 5540 7.645340 ACGTTATAACTCGAGTATTTAACGCAT 59.355 33.333 36.23 26.74 40.20 4.73
4313 5541 7.937817 CGTTATAACTCGAGTATTTAACGCATG 59.062 37.037 31.75 18.81 35.55 4.06
4314 5542 8.749499 GTTATAACTCGAGTATTTAACGCATGT 58.251 33.333 20.39 0.17 0.00 3.21
4315 5543 7.766219 ATAACTCGAGTATTTAACGCATGTT 57.234 32.000 20.39 0.00 42.19 2.71
4316 5544 5.697848 ACTCGAGTATTTAACGCATGTTC 57.302 39.130 18.46 0.00 39.54 3.18
4317 5545 5.165676 ACTCGAGTATTTAACGCATGTTCA 58.834 37.500 18.46 0.00 39.54 3.18
4318 5546 5.810587 ACTCGAGTATTTAACGCATGTTCAT 59.189 36.000 18.46 0.00 39.54 2.57
4319 5547 6.031549 TCGAGTATTTAACGCATGTTCATG 57.968 37.500 8.26 8.26 39.54 3.07
4320 5548 5.579119 TCGAGTATTTAACGCATGTTCATGT 59.421 36.000 13.24 0.00 39.54 3.21
4321 5549 6.752815 TCGAGTATTTAACGCATGTTCATGTA 59.247 34.615 13.24 0.00 39.54 2.29
4322 5550 7.436970 TCGAGTATTTAACGCATGTTCATGTAT 59.563 33.333 13.24 4.25 39.54 2.29
4323 5551 7.736017 CGAGTATTTAACGCATGTTCATGTATC 59.264 37.037 13.24 0.00 39.54 2.24
4324 5552 7.861630 AGTATTTAACGCATGTTCATGTATCC 58.138 34.615 13.24 0.00 39.54 2.59
4325 5553 5.493133 TTTAACGCATGTTCATGTATCCC 57.507 39.130 13.24 0.00 39.54 3.85
4326 5554 3.281727 AACGCATGTTCATGTATCCCT 57.718 42.857 13.24 0.00 30.83 4.20
4327 5555 4.415881 AACGCATGTTCATGTATCCCTA 57.584 40.909 13.24 0.00 30.83 3.53
4328 5556 4.623932 ACGCATGTTCATGTATCCCTAT 57.376 40.909 13.24 0.00 0.00 2.57
4329 5557 4.318332 ACGCATGTTCATGTATCCCTATG 58.682 43.478 13.24 0.00 0.00 2.23
4330 5558 4.040339 ACGCATGTTCATGTATCCCTATGA 59.960 41.667 13.24 0.00 0.00 2.15
4331 5559 5.181009 CGCATGTTCATGTATCCCTATGAT 58.819 41.667 13.24 0.00 33.68 2.45
4332 5560 5.064325 CGCATGTTCATGTATCCCTATGATG 59.936 44.000 13.24 0.00 33.68 3.07
4333 5561 5.942236 GCATGTTCATGTATCCCTATGATGT 59.058 40.000 13.24 0.00 33.68 3.06
4334 5562 7.105588 GCATGTTCATGTATCCCTATGATGTA 58.894 38.462 13.24 0.00 33.68 2.29
4335 5563 7.065085 GCATGTTCATGTATCCCTATGATGTAC 59.935 40.741 13.24 0.00 33.68 2.90
4336 5564 7.004555 TGTTCATGTATCCCTATGATGTACC 57.995 40.000 0.00 0.00 33.68 3.34
4337 5565 5.914898 TCATGTATCCCTATGATGTACCG 57.085 43.478 0.00 0.00 34.76 4.02
4338 5566 4.159693 TCATGTATCCCTATGATGTACCGC 59.840 45.833 0.00 0.00 34.76 5.68
4339 5567 3.774734 TGTATCCCTATGATGTACCGCT 58.225 45.455 0.00 0.00 34.76 5.52
4340 5568 4.157246 TGTATCCCTATGATGTACCGCTT 58.843 43.478 0.00 0.00 34.76 4.68
4341 5569 3.963428 ATCCCTATGATGTACCGCTTC 57.037 47.619 0.00 0.00 30.54 3.86
4342 5570 1.968493 TCCCTATGATGTACCGCTTCC 59.032 52.381 0.00 0.00 0.00 3.46
4343 5571 1.336887 CCCTATGATGTACCGCTTCCG 60.337 57.143 0.00 0.00 0.00 4.30
4344 5572 1.340248 CCTATGATGTACCGCTTCCGT 59.660 52.381 0.00 0.00 0.00 4.69
4345 5573 2.607282 CCTATGATGTACCGCTTCCGTC 60.607 54.545 0.00 0.00 0.00 4.79
4346 5574 0.104304 ATGATGTACCGCTTCCGTCC 59.896 55.000 0.00 0.00 0.00 4.79
4347 5575 1.227176 GATGTACCGCTTCCGTCCC 60.227 63.158 0.00 0.00 0.00 4.46
4348 5576 2.948840 GATGTACCGCTTCCGTCCCG 62.949 65.000 0.00 0.00 0.00 5.14
4349 5577 3.443045 GTACCGCTTCCGTCCCGA 61.443 66.667 0.00 0.00 0.00 5.14
4350 5578 2.676121 TACCGCTTCCGTCCCGAA 60.676 61.111 0.00 0.00 0.00 4.30
4351 5579 2.053865 TACCGCTTCCGTCCCGAAT 61.054 57.895 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.276622 AACCCTACGTCCTGCTTGAT 58.723 50.000 0.00 0.00 0.00 2.57
2 3 1.892209 AAAACCCTACGTCCTGCTTG 58.108 50.000 0.00 0.00 0.00 4.01
3 4 2.289882 GGTAAAACCCTACGTCCTGCTT 60.290 50.000 0.00 0.00 30.04 3.91
4 5 1.277273 GGTAAAACCCTACGTCCTGCT 59.723 52.381 0.00 0.00 30.04 4.24
5 6 1.277273 AGGTAAAACCCTACGTCCTGC 59.723 52.381 0.00 0.00 39.75 4.85
6 7 2.093816 GGAGGTAAAACCCTACGTCCTG 60.094 54.545 12.88 0.00 46.43 3.86
7 8 2.182827 GGAGGTAAAACCCTACGTCCT 58.817 52.381 12.88 0.00 46.43 3.85
8 9 2.680312 GGAGGTAAAACCCTACGTCC 57.320 55.000 0.00 6.71 44.94 4.79
9 10 3.790091 GATGGAGGTAAAACCCTACGTC 58.210 50.000 0.00 0.00 42.79 4.34
10 11 3.175594 TGATGGAGGTAAAACCCTACGT 58.824 45.455 0.00 0.00 38.41 3.57
11 12 3.899052 TGATGGAGGTAAAACCCTACG 57.101 47.619 0.00 0.00 38.41 3.51
12 13 5.429130 CTCTTGATGGAGGTAAAACCCTAC 58.571 45.833 0.00 0.00 39.75 3.18
13 14 4.473559 CCTCTTGATGGAGGTAAAACCCTA 59.526 45.833 2.65 0.00 45.65 3.53
14 15 3.267031 CCTCTTGATGGAGGTAAAACCCT 59.733 47.826 2.65 0.00 45.65 4.34
15 16 3.621558 CCTCTTGATGGAGGTAAAACCC 58.378 50.000 2.65 0.00 45.65 4.11
24 25 1.626356 TTCGGGCCCTCTTGATGGAG 61.626 60.000 22.43 0.00 0.00 3.86
25 26 0.988145 ATTCGGGCCCTCTTGATGGA 60.988 55.000 22.43 3.53 0.00 3.41
26 27 0.536006 GATTCGGGCCCTCTTGATGG 60.536 60.000 22.43 0.54 0.00 3.51
27 28 0.471617 AGATTCGGGCCCTCTTGATG 59.528 55.000 22.43 1.43 0.00 3.07
28 29 0.471617 CAGATTCGGGCCCTCTTGAT 59.528 55.000 22.43 6.06 0.00 2.57
29 30 1.626356 CCAGATTCGGGCCCTCTTGA 61.626 60.000 22.43 6.61 0.00 3.02
30 31 1.153086 CCAGATTCGGGCCCTCTTG 60.153 63.158 22.43 8.27 0.00 3.02
31 32 2.378634 CCCAGATTCGGGCCCTCTT 61.379 63.158 22.43 3.07 40.07 2.85
32 33 2.770048 CCCAGATTCGGGCCCTCT 60.770 66.667 22.43 13.78 40.07 3.69
39 40 3.063452 CACGATGTTTTACCCAGATTCGG 59.937 47.826 0.00 0.00 0.00 4.30
40 41 3.682858 ACACGATGTTTTACCCAGATTCG 59.317 43.478 0.00 0.00 0.00 3.34
41 42 5.391629 GGAACACGATGTTTTACCCAGATTC 60.392 44.000 0.00 0.00 41.28 2.52
42 43 4.457949 GGAACACGATGTTTTACCCAGATT 59.542 41.667 0.00 0.00 41.28 2.40
43 44 4.007659 GGAACACGATGTTTTACCCAGAT 58.992 43.478 0.00 0.00 41.28 2.90
44 45 3.071892 AGGAACACGATGTTTTACCCAGA 59.928 43.478 0.00 0.00 41.28 3.86
45 46 3.408634 AGGAACACGATGTTTTACCCAG 58.591 45.455 0.00 0.00 41.28 4.45
46 47 3.495434 AGGAACACGATGTTTTACCCA 57.505 42.857 0.00 0.00 41.28 4.51
47 48 4.154737 GGTAAGGAACACGATGTTTTACCC 59.845 45.833 20.14 11.90 42.38 3.69
48 49 4.999311 AGGTAAGGAACACGATGTTTTACC 59.001 41.667 21.58 21.58 45.30 2.85
49 50 5.121298 GGAGGTAAGGAACACGATGTTTTAC 59.879 44.000 12.26 12.26 41.28 2.01
50 51 5.012354 AGGAGGTAAGGAACACGATGTTTTA 59.988 40.000 0.00 0.00 41.28 1.52
51 52 4.070009 GGAGGTAAGGAACACGATGTTTT 58.930 43.478 0.00 0.00 41.28 2.43
52 53 3.326880 AGGAGGTAAGGAACACGATGTTT 59.673 43.478 0.00 0.00 41.28 2.83
53 54 2.904434 AGGAGGTAAGGAACACGATGTT 59.096 45.455 3.52 3.52 44.37 2.71
54 55 2.233922 CAGGAGGTAAGGAACACGATGT 59.766 50.000 0.00 0.00 0.00 3.06
55 56 2.233922 ACAGGAGGTAAGGAACACGATG 59.766 50.000 0.00 0.00 0.00 3.84
56 57 2.537143 ACAGGAGGTAAGGAACACGAT 58.463 47.619 0.00 0.00 0.00 3.73
57 58 2.005370 ACAGGAGGTAAGGAACACGA 57.995 50.000 0.00 0.00 0.00 4.35
58 59 2.833631 AACAGGAGGTAAGGAACACG 57.166 50.000 0.00 0.00 0.00 4.49
59 60 3.325716 TGGTAACAGGAGGTAAGGAACAC 59.674 47.826 0.00 0.00 46.17 3.32
60 61 3.589641 TGGTAACAGGAGGTAAGGAACA 58.410 45.455 0.00 0.00 46.17 3.18
75 76 1.601412 GCGTCTAGGCCGTATGGTAAC 60.601 57.143 2.17 0.00 37.67 2.50
76 77 0.670162 GCGTCTAGGCCGTATGGTAA 59.330 55.000 2.17 0.00 37.67 2.85
77 78 0.466007 TGCGTCTAGGCCGTATGGTA 60.466 55.000 2.17 0.00 37.67 3.25
78 79 1.755395 TGCGTCTAGGCCGTATGGT 60.755 57.895 2.17 0.00 37.67 3.55
79 80 1.299926 GTGCGTCTAGGCCGTATGG 60.300 63.158 0.00 0.00 38.77 2.74
80 81 0.595053 CTGTGCGTCTAGGCCGTATG 60.595 60.000 0.00 0.00 0.00 2.39
81 82 1.035932 ACTGTGCGTCTAGGCCGTAT 61.036 55.000 0.00 0.00 0.00 3.06
82 83 1.246056 AACTGTGCGTCTAGGCCGTA 61.246 55.000 0.00 0.00 0.00 4.02
83 84 2.488087 GAACTGTGCGTCTAGGCCGT 62.488 60.000 0.00 0.00 0.00 5.68
84 85 1.805945 GAACTGTGCGTCTAGGCCG 60.806 63.158 0.00 0.00 0.00 6.13
85 86 1.805945 CGAACTGTGCGTCTAGGCC 60.806 63.158 0.00 0.00 0.00 5.19
86 87 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
87 88 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
88 89 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
89 90 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
90 91 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
91 92 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
92 93 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
94 95 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
103 104 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
104 105 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
105 106 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
106 107 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
107 108 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
108 109 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
109 110 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
110 111 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
111 112 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
116 117 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
117 118 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
118 119 0.035439 ATGTCAAAACCGGCGGATCT 60.035 50.000 35.78 13.84 0.00 2.75
119 120 0.377203 GATGTCAAAACCGGCGGATC 59.623 55.000 35.78 19.06 0.00 3.36
120 121 1.366111 CGATGTCAAAACCGGCGGAT 61.366 55.000 35.78 20.37 0.00 4.18
121 122 2.030401 CGATGTCAAAACCGGCGGA 61.030 57.895 35.78 8.64 0.00 5.54
122 123 2.030401 TCGATGTCAAAACCGGCGG 61.030 57.895 27.06 27.06 0.00 6.13
123 124 1.131826 GTCGATGTCAAAACCGGCG 59.868 57.895 0.00 0.00 0.00 6.46
124 125 0.110373 GTGTCGATGTCAAAACCGGC 60.110 55.000 0.00 0.00 0.00 6.13
125 126 0.515564 GGTGTCGATGTCAAAACCGG 59.484 55.000 0.00 0.00 0.00 5.28
126 127 1.194547 CTGGTGTCGATGTCAAAACCG 59.805 52.381 0.00 0.00 0.00 4.44
127 128 1.069227 GCTGGTGTCGATGTCAAAACC 60.069 52.381 0.00 0.00 0.00 3.27
128 129 1.398451 CGCTGGTGTCGATGTCAAAAC 60.398 52.381 0.00 0.00 0.00 2.43
129 130 0.865111 CGCTGGTGTCGATGTCAAAA 59.135 50.000 0.00 0.00 0.00 2.44
130 131 0.032815 TCGCTGGTGTCGATGTCAAA 59.967 50.000 0.00 0.00 0.00 2.69
131 132 0.032815 TTCGCTGGTGTCGATGTCAA 59.967 50.000 0.00 0.00 35.75 3.18
132 133 0.388520 CTTCGCTGGTGTCGATGTCA 60.389 55.000 0.00 0.00 35.75 3.58
133 134 0.109272 TCTTCGCTGGTGTCGATGTC 60.109 55.000 0.00 0.00 35.75 3.06
134 135 0.388649 GTCTTCGCTGGTGTCGATGT 60.389 55.000 0.00 0.00 35.75 3.06
135 136 0.388520 TGTCTTCGCTGGTGTCGATG 60.389 55.000 0.00 0.00 35.75 3.84
136 137 0.388649 GTGTCTTCGCTGGTGTCGAT 60.389 55.000 0.00 0.00 35.75 3.59
137 138 1.007734 GTGTCTTCGCTGGTGTCGA 60.008 57.895 0.00 0.00 0.00 4.20
138 139 2.022129 GGTGTCTTCGCTGGTGTCG 61.022 63.158 0.00 0.00 0.00 4.35
139 140 0.601558 TAGGTGTCTTCGCTGGTGTC 59.398 55.000 0.00 0.00 0.00 3.67
140 141 1.066858 CATAGGTGTCTTCGCTGGTGT 60.067 52.381 0.00 0.00 0.00 4.16
141 142 1.645034 CATAGGTGTCTTCGCTGGTG 58.355 55.000 0.00 0.00 0.00 4.17
142 143 0.108138 GCATAGGTGTCTTCGCTGGT 60.108 55.000 0.00 0.00 0.00 4.00
143 144 0.811616 GGCATAGGTGTCTTCGCTGG 60.812 60.000 0.00 0.00 0.00 4.85
144 145 0.811616 GGGCATAGGTGTCTTCGCTG 60.812 60.000 0.00 0.00 0.00 5.18
145 146 1.264749 TGGGCATAGGTGTCTTCGCT 61.265 55.000 0.00 0.00 0.00 4.93
146 147 0.179045 ATGGGCATAGGTGTCTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
165 166 2.923426 CTTGCCGCTTCGCCCAGATA 62.923 60.000 0.00 0.00 0.00 1.98
223 224 3.739300 CGTCCAAAGAGTGTACGAACATT 59.261 43.478 0.00 0.00 38.08 2.71
232 233 0.969894 CCTCCTCGTCCAAAGAGTGT 59.030 55.000 0.00 0.00 34.08 3.55
239 240 1.677966 CCTCGTCCTCCTCGTCCAA 60.678 63.158 0.00 0.00 0.00 3.53
240 241 1.923006 ATCCTCGTCCTCCTCGTCCA 61.923 60.000 0.00 0.00 0.00 4.02
253 254 1.162181 ATGCGGCATTGTCATCCTCG 61.162 55.000 10.23 0.00 0.00 4.63
261 262 2.824041 GGTCGGATGCGGCATTGT 60.824 61.111 17.78 0.00 0.00 2.71
262 263 3.585990 GGGTCGGATGCGGCATTG 61.586 66.667 17.78 12.83 0.00 2.82
263 264 4.875713 GGGGTCGGATGCGGCATT 62.876 66.667 17.78 0.42 0.00 3.56
274 275 2.299521 CTCCTAGAGTTGTAGGGGTCG 58.700 57.143 2.84 0.00 40.25 4.79
280 281 2.017782 TGCTCGCTCCTAGAGTTGTAG 58.982 52.381 0.00 0.00 37.99 2.74
285 286 1.410882 GGATTTGCTCGCTCCTAGAGT 59.589 52.381 0.00 0.00 37.99 3.24
305 306 4.025401 GCAACACGGGTCAAGGCG 62.025 66.667 0.00 0.00 0.00 5.52
322 323 0.651042 CGTCGTAGCGCTAGAAGACG 60.651 60.000 34.27 34.27 43.79 4.18
329 330 0.798159 TCTTTGTCGTCGTAGCGCTA 59.202 50.000 14.45 14.45 0.00 4.26
346 347 1.376424 CATGACTGCCCTTGCGTCT 60.376 57.895 0.00 0.00 41.78 4.18
347 348 2.401766 CCATGACTGCCCTTGCGTC 61.402 63.158 0.00 0.00 41.78 5.19
348 349 2.360350 CCATGACTGCCCTTGCGT 60.360 61.111 0.00 0.00 41.78 5.24
349 350 3.136123 CCCATGACTGCCCTTGCG 61.136 66.667 0.00 0.00 41.78 4.85
350 351 2.036256 ACCCATGACTGCCCTTGC 59.964 61.111 0.00 0.00 38.26 4.01
351 352 1.679977 CCACCCATGACTGCCCTTG 60.680 63.158 0.00 0.00 0.00 3.61
353 354 2.204136 TCCACCCATGACTGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
354 355 2.044946 GTCCACCCATGACTGCCC 60.045 66.667 0.00 0.00 0.00 5.36
356 357 1.168714 GAAAGTCCACCCATGACTGC 58.831 55.000 0.00 0.00 42.10 4.40
357 358 2.867109 AGAAAGTCCACCCATGACTG 57.133 50.000 0.00 0.00 42.10 3.51
360 361 5.014123 AGTTATGAAGAAAGTCCACCCATGA 59.986 40.000 0.00 0.00 0.00 3.07
361 362 5.256474 AGTTATGAAGAAAGTCCACCCATG 58.744 41.667 0.00 0.00 0.00 3.66
363 364 4.597507 AGAGTTATGAAGAAAGTCCACCCA 59.402 41.667 0.00 0.00 0.00 4.51
406 417 7.333174 TCGTACATGTCATCAGAATAGCAAAAA 59.667 33.333 0.00 0.00 0.00 1.94
415 426 4.098501 AGCTCATCGTACATGTCATCAGAA 59.901 41.667 0.00 0.00 0.00 3.02
418 429 4.022849 CCTAGCTCATCGTACATGTCATCA 60.023 45.833 0.00 0.00 0.00 3.07
419 430 4.022762 ACCTAGCTCATCGTACATGTCATC 60.023 45.833 0.00 0.00 0.00 2.92
430 441 2.884012 AGATCAGACACCTAGCTCATCG 59.116 50.000 0.00 0.00 0.00 3.84
440 462 6.159988 GCATAGGTTATGTAGATCAGACACC 58.840 44.000 2.84 1.35 38.43 4.16
445 467 4.623167 GCACGCATAGGTTATGTAGATCAG 59.377 45.833 0.00 0.00 38.43 2.90
456 478 2.781681 AAGGTAAGCACGCATAGGTT 57.218 45.000 0.00 0.00 0.00 3.50
464 486 3.117434 GTGCAACATAAGGTAAGCACG 57.883 47.619 0.00 0.00 45.47 5.34
472 494 5.589855 TCATACATTCTGGTGCAACATAAGG 59.410 40.000 4.06 9.22 39.98 2.69
473 495 6.682423 TCATACATTCTGGTGCAACATAAG 57.318 37.500 4.06 1.42 39.98 1.73
496 518 9.430399 ACATCCTTCATATCAAATCCTCAAATT 57.570 29.630 0.00 0.00 0.00 1.82
525 547 4.055360 CCGTCAATTGTCTGTGTCTACAA 58.945 43.478 5.13 0.00 39.73 2.41
535 557 1.405526 CCGATGACCCGTCAATTGTCT 60.406 52.381 5.13 0.00 43.58 3.41
540 562 2.189521 GGCCGATGACCCGTCAAT 59.810 61.111 0.91 0.00 43.58 2.57
545 567 4.082523 ACAGTGGCCGATGACCCG 62.083 66.667 13.56 0.00 0.00 5.28
556 578 2.165167 AGGCATGTTCATTGACAGTGG 58.835 47.619 0.00 0.00 32.19 4.00
558 580 3.614092 CCTAGGCATGTTCATTGACAGT 58.386 45.455 0.00 0.00 32.19 3.55
581 603 3.118454 CTCAAACATCCGCGGCGT 61.118 61.111 23.51 17.78 0.00 5.68
582 604 3.864686 CCTCAAACATCCGCGGCG 61.865 66.667 23.51 16.78 0.00 6.46
612 669 7.540474 ACAATATATCATCTACAACCGGACT 57.460 36.000 9.46 0.00 0.00 3.85
628 690 8.659527 TCTGTCCAACACCATCATACAATATAT 58.340 33.333 0.00 0.00 0.00 0.86
630 692 6.899089 TCTGTCCAACACCATCATACAATAT 58.101 36.000 0.00 0.00 0.00 1.28
637 699 5.045651 TGAAGTATCTGTCCAACACCATCAT 60.046 40.000 0.00 0.00 0.00 2.45
691 753 5.010933 TCGGAGAGATTGAGTCAGTAGTTT 58.989 41.667 0.00 0.00 0.00 2.66
693 755 4.223556 TCGGAGAGATTGAGTCAGTAGT 57.776 45.455 0.00 0.00 0.00 2.73
703 765 5.220739 CCAAATAAGCACTTCGGAGAGATTG 60.221 44.000 0.00 0.00 38.43 2.67
704 766 4.878397 CCAAATAAGCACTTCGGAGAGATT 59.122 41.667 0.00 0.00 38.43 2.40
712 774 2.987413 TGCACCAAATAAGCACTTCG 57.013 45.000 0.00 0.00 32.55 3.79
730 792 3.610677 TCACTTGTATGAACGCACGTATG 59.389 43.478 0.00 0.00 0.00 2.39
732 794 3.239254 CTCACTTGTATGAACGCACGTA 58.761 45.455 0.00 0.00 0.00 3.57
733 795 2.058798 CTCACTTGTATGAACGCACGT 58.941 47.619 0.00 0.00 0.00 4.49
734 796 2.058798 ACTCACTTGTATGAACGCACG 58.941 47.619 0.00 0.00 0.00 5.34
746 816 3.408755 TGCACACGCACTCACTTG 58.591 55.556 0.00 0.00 45.36 3.16
756 826 1.507713 CGACGCTCAAATGCACACG 60.508 57.895 0.00 0.00 0.00 4.49
762 1919 1.133253 CAGGCACGACGCTCAAATG 59.867 57.895 0.00 0.00 41.91 2.32
845 2002 4.892934 TGAGAGCCCATTGTTGTACTTTTT 59.107 37.500 0.00 0.00 0.00 1.94
846 2003 4.278419 GTGAGAGCCCATTGTTGTACTTTT 59.722 41.667 0.00 0.00 0.00 2.27
847 2004 3.821033 GTGAGAGCCCATTGTTGTACTTT 59.179 43.478 0.00 0.00 0.00 2.66
848 2005 3.412386 GTGAGAGCCCATTGTTGTACTT 58.588 45.455 0.00 0.00 0.00 2.24
849 2006 2.612972 CGTGAGAGCCCATTGTTGTACT 60.613 50.000 0.00 0.00 0.00 2.73
850 2007 1.732259 CGTGAGAGCCCATTGTTGTAC 59.268 52.381 0.00 0.00 0.00 2.90
851 2008 1.943968 GCGTGAGAGCCCATTGTTGTA 60.944 52.381 0.00 0.00 0.00 2.41
852 2009 1.237285 GCGTGAGAGCCCATTGTTGT 61.237 55.000 0.00 0.00 0.00 3.32
853 2010 1.503542 GCGTGAGAGCCCATTGTTG 59.496 57.895 0.00 0.00 0.00 3.33
854 2011 2.034879 CGCGTGAGAGCCCATTGTT 61.035 57.895 0.00 0.00 0.00 2.83
855 2012 2.434884 CGCGTGAGAGCCCATTGT 60.435 61.111 0.00 0.00 0.00 2.71
856 2013 3.197790 CCGCGTGAGAGCCCATTG 61.198 66.667 4.92 0.00 0.00 2.82
857 2014 4.473520 CCCGCGTGAGAGCCCATT 62.474 66.667 4.92 0.00 0.00 3.16
945 2102 0.618968 GGGGAGAGTGGGATCTGTGT 60.619 60.000 0.00 0.00 0.00 3.72
1210 2394 5.672856 CGCGAATTTAGCATCTAAAACTGAC 59.327 40.000 0.00 0.00 34.19 3.51
1227 2411 0.529992 GGTGTAGCTAGCCGCGAATT 60.530 55.000 12.13 0.00 45.59 2.17
1231 2415 1.878522 CTTGGTGTAGCTAGCCGCG 60.879 63.158 12.13 0.00 45.59 6.46
1233 2417 0.807667 CTGCTTGGTGTAGCTAGCCG 60.808 60.000 12.13 5.13 41.76 5.52
1241 2425 1.079405 GCGCCTACTGCTTGGTGTA 60.079 57.895 0.00 0.00 38.05 2.90
1342 2527 1.667151 GGCCAAGAAATGCAGTGCA 59.333 52.632 22.22 22.22 44.86 4.57
1487 2672 5.807520 TGACGCTTTAAGCAGAGAAGAATAG 59.192 40.000 17.51 0.00 42.58 1.73
1511 2696 7.492669 CCGTCACTTTACATAGATTCATTCACT 59.507 37.037 0.00 0.00 0.00 3.41
1512 2697 7.621991 CCGTCACTTTACATAGATTCATTCAC 58.378 38.462 0.00 0.00 0.00 3.18
1518 2703 7.766219 TTAAGCCGTCACTTTACATAGATTC 57.234 36.000 0.00 0.00 0.00 2.52
1531 2716 5.815740 TCCTCAAGATAATTTAAGCCGTCAC 59.184 40.000 0.00 0.00 0.00 3.67
1551 2736 4.579869 TGAAGAAGGTATGTTGCTTCCTC 58.420 43.478 0.00 0.00 35.34 3.71
1806 2994 7.865889 TGTCGGTATATTTGCACTAGATTACAG 59.134 37.037 0.00 0.00 0.00 2.74
1869 3057 6.423905 TCAAAAGAATCGTAGTGAGAGTTTGG 59.576 38.462 0.00 0.00 0.00 3.28
2008 3198 9.064706 CAGTAGATTAGCAATTGAATCCTGATT 57.935 33.333 10.34 0.00 33.34 2.57
2050 3240 1.373748 GGCAGCTTTCCGACGTACA 60.374 57.895 0.00 0.00 0.00 2.90
2137 3327 3.498777 GTGTTTCTAGTTGCTCCTTGGAC 59.501 47.826 0.00 0.00 0.00 4.02
2293 3483 0.452184 ATGACGTGATCGAAGCTCGT 59.548 50.000 15.40 15.40 41.35 4.18
2386 3576 2.338577 AGCTGCTTTGGTGCCTATAG 57.661 50.000 0.00 0.00 0.00 1.31
2411 3601 9.939802 CATCATATAAGGTGAGAAGATCATTCA 57.060 33.333 0.00 0.00 40.92 2.57
2438 3631 1.942657 GAAGTTCTTCTGCACTGCACA 59.057 47.619 0.00 0.00 33.79 4.57
2519 3712 1.533731 ACGGTACAGCAAAAACATCCG 59.466 47.619 0.00 0.00 41.95 4.18
2525 3718 4.640789 ATTGTCAACGGTACAGCAAAAA 57.359 36.364 0.00 0.00 0.00 1.94
2530 3723 4.483476 AAAGAATTGTCAACGGTACAGC 57.517 40.909 0.00 0.00 0.00 4.40
2577 3770 2.050836 TTTCGGGCAGCTCACTCCAA 62.051 55.000 0.00 0.00 0.00 3.53
2661 3854 8.413309 AAGGAGATTCAAGATCAAACATTTCA 57.587 30.769 0.00 0.00 0.00 2.69
2730 3923 2.231478 CCAAAAGAGAGCCGACTACTCA 59.769 50.000 0.00 0.00 36.58 3.41
2734 3927 0.973632 TGCCAAAAGAGAGCCGACTA 59.026 50.000 0.00 0.00 0.00 2.59
2740 3933 1.200948 GGTGTCATGCCAAAAGAGAGC 59.799 52.381 0.00 0.00 0.00 4.09
2761 3954 7.255942 CCATTCTTGGGTTGTCTTACTGATTTT 60.256 37.037 0.00 0.00 39.56 1.82
2896 4089 2.614057 AGTCAGAAAGGAAACAACAGCG 59.386 45.455 0.00 0.00 0.00 5.18
3033 4232 3.352447 CGTGAGCTAGTGGATGTGG 57.648 57.895 0.00 0.00 0.00 4.17
3052 4251 5.530171 CCTGTAATGGACATGAAAGATCAGG 59.470 44.000 0.00 5.51 42.90 3.86
3055 4254 5.238214 GCTCCTGTAATGGACATGAAAGATC 59.762 44.000 0.00 0.00 37.45 2.75
3094 4293 5.693555 GCATCAAATTCCTAGCCTTTTATGC 59.306 40.000 10.56 10.56 0.00 3.14
3207 4406 2.041115 CGGAGACTCTCGGCTGACA 61.041 63.158 1.74 0.00 0.00 3.58
3231 4431 1.135315 GCCTACACGCACAATGCAG 59.865 57.895 1.20 0.00 45.36 4.41
3236 4436 2.093711 ACATGATAGCCTACACGCACAA 60.094 45.455 0.00 0.00 0.00 3.33
3241 4441 4.811024 ACATCAAACATGATAGCCTACACG 59.189 41.667 0.00 0.00 0.00 4.49
3283 4505 7.754069 TTTAGCAAACAAAAACATGAGTCAG 57.246 32.000 0.00 0.00 0.00 3.51
3344 4568 3.325870 TCGAGTTATGACTGGCAAAGTG 58.674 45.455 0.00 0.00 40.07 3.16
3493 4721 4.745620 GCTCCGGATATCTTCTTGTGTTAC 59.254 45.833 3.57 0.00 0.00 2.50
3508 4736 1.690633 ATGACACAGGGCTCCGGAT 60.691 57.895 3.57 0.00 0.00 4.18
3527 4755 5.453198 GGTCTTCTCTCAAGATTCAGGGATC 60.453 48.000 0.00 0.00 0.00 3.36
3564 4792 4.960938 TGTTTGTGACTAGTTGCAGATCT 58.039 39.130 0.00 0.00 0.00 2.75
3575 4803 5.745312 AGATGATGACCTGTTTGTGACTA 57.255 39.130 0.00 0.00 0.00 2.59
3624 4852 3.569701 GGTGTCAAGAATGAAGGAAGCAA 59.430 43.478 0.00 0.00 37.30 3.91
3635 4863 0.035317 TCAGCGCTGGTGTCAAGAAT 59.965 50.000 35.36 0.00 32.43 2.40
3664 4892 2.297033 GCAGGTGTGTTGGATTGATGTT 59.703 45.455 0.00 0.00 0.00 2.71
3703 4931 2.851263 TTCACGGTACTCAAAGCCAT 57.149 45.000 0.00 0.00 0.00 4.40
3735 4963 1.272203 ACTCGAGCTCTCTTCCTTCCA 60.272 52.381 13.61 0.00 0.00 3.53
3748 4976 0.389948 ACCGGTCAAATGACTCGAGC 60.390 55.000 13.61 6.11 44.20 5.03
3793 5021 2.224523 TGAGAAATCCTGCTTTGTCCGT 60.225 45.455 0.00 0.00 29.72 4.69
3809 5037 1.742880 GCGCTGATGCTGGTGAGAA 60.743 57.895 0.00 0.00 36.97 2.87
3812 5040 2.435410 CTGCGCTGATGCTGGTGA 60.435 61.111 9.73 0.00 36.97 4.02
3840 5068 4.923281 GGTATGATTTGCTGTTGTTGTTCC 59.077 41.667 0.00 0.00 0.00 3.62
3931 5159 3.083997 GGCTGGAGGTCCATCGGT 61.084 66.667 0.00 0.00 46.46 4.69
3989 5217 2.348888 CGTCTAGGAGCCAACGGGT 61.349 63.158 0.00 0.00 36.17 5.28
3994 5222 0.902984 TGCCTTCGTCTAGGAGCCAA 60.903 55.000 5.39 0.00 37.50 4.52
4114 5342 1.507141 CTGTTCGCTTGGTGGGTGTC 61.507 60.000 0.00 0.00 0.00 3.67
4124 5352 1.755393 AACCTCGGGTCTGTTCGCTT 61.755 55.000 0.00 0.00 33.12 4.68
4195 5423 0.110486 ACGAGGGTTTCCTTGCATGT 59.890 50.000 0.00 0.00 46.46 3.21
4248 5476 0.459759 GAGTAACTTCCGCCCCGAAG 60.460 60.000 0.00 0.00 44.07 3.79
4258 5486 4.304939 AGTAGGCAAACACGAGTAACTTC 58.695 43.478 0.00 0.00 0.00 3.01
4259 5487 4.304939 GAGTAGGCAAACACGAGTAACTT 58.695 43.478 0.00 0.00 0.00 2.66
4260 5488 3.305881 GGAGTAGGCAAACACGAGTAACT 60.306 47.826 0.00 0.00 0.00 2.24
4261 5489 2.991866 GGAGTAGGCAAACACGAGTAAC 59.008 50.000 0.00 0.00 0.00 2.50
4262 5490 2.629137 TGGAGTAGGCAAACACGAGTAA 59.371 45.455 0.00 0.00 0.00 2.24
4263 5491 2.029649 GTGGAGTAGGCAAACACGAGTA 60.030 50.000 0.00 0.00 0.00 2.59
4264 5492 1.045407 TGGAGTAGGCAAACACGAGT 58.955 50.000 0.00 0.00 0.00 4.18
4265 5493 1.429463 GTGGAGTAGGCAAACACGAG 58.571 55.000 0.00 0.00 0.00 4.18
4266 5494 3.599412 GTGGAGTAGGCAAACACGA 57.401 52.632 0.00 0.00 0.00 4.35
4267 5495 2.150424 CGTGGAGTAGGCAAACACG 58.850 57.895 0.00 0.00 46.82 4.49
4268 5496 1.145803 GTCGTGGAGTAGGCAAACAC 58.854 55.000 0.00 0.00 0.00 3.32
4269 5497 0.319211 CGTCGTGGAGTAGGCAAACA 60.319 55.000 0.00 0.00 0.00 2.83
4270 5498 0.319297 ACGTCGTGGAGTAGGCAAAC 60.319 55.000 0.00 0.00 0.00 2.93
4271 5499 0.390124 AACGTCGTGGAGTAGGCAAA 59.610 50.000 0.00 0.00 0.00 3.68
4272 5500 1.246649 TAACGTCGTGGAGTAGGCAA 58.753 50.000 0.00 0.00 0.00 4.52
4273 5501 1.466856 ATAACGTCGTGGAGTAGGCA 58.533 50.000 0.00 0.00 0.00 4.75
4274 5502 3.065925 AGTTATAACGTCGTGGAGTAGGC 59.934 47.826 9.91 0.00 0.00 3.93
4275 5503 4.551603 CGAGTTATAACGTCGTGGAGTAGG 60.552 50.000 20.15 0.00 0.00 3.18
4276 5504 4.268644 TCGAGTTATAACGTCGTGGAGTAG 59.731 45.833 24.00 4.39 33.98 2.57
4277 5505 4.180817 TCGAGTTATAACGTCGTGGAGTA 58.819 43.478 24.00 10.93 33.98 2.59
4278 5506 3.002791 TCGAGTTATAACGTCGTGGAGT 58.997 45.455 24.00 3.58 33.98 3.85
4279 5507 3.063180 ACTCGAGTTATAACGTCGTGGAG 59.937 47.826 25.40 19.21 33.98 3.86
4280 5508 3.002791 ACTCGAGTTATAACGTCGTGGA 58.997 45.455 25.40 12.28 33.98 4.02
4281 5509 3.395858 ACTCGAGTTATAACGTCGTGG 57.604 47.619 25.40 21.72 33.98 4.94
4282 5510 8.456797 GTTAAATACTCGAGTTATAACGTCGTG 58.543 37.037 25.44 23.45 33.98 4.35
4283 5511 7.370836 CGTTAAATACTCGAGTTATAACGTCGT 59.629 37.037 33.60 16.45 37.56 4.34
4284 5512 7.611314 GCGTTAAATACTCGAGTTATAACGTCG 60.611 40.741 36.74 26.42 40.49 5.12
4285 5513 7.164171 TGCGTTAAATACTCGAGTTATAACGTC 59.836 37.037 36.74 32.20 40.49 4.34
4286 5514 6.966632 TGCGTTAAATACTCGAGTTATAACGT 59.033 34.615 36.74 19.90 40.49 3.99
4287 5515 7.367458 TGCGTTAAATACTCGAGTTATAACG 57.633 36.000 35.34 35.34 40.85 3.18
4288 5516 8.749499 ACATGCGTTAAATACTCGAGTTATAAC 58.251 33.333 25.44 24.36 0.00 1.89
4289 5517 8.861033 ACATGCGTTAAATACTCGAGTTATAA 57.139 30.769 25.44 16.62 0.00 0.98
4290 5518 8.861033 AACATGCGTTAAATACTCGAGTTATA 57.139 30.769 25.44 11.60 32.05 0.98
4291 5519 7.490079 TGAACATGCGTTAAATACTCGAGTTAT 59.510 33.333 25.44 10.28 34.75 1.89
4292 5520 6.807720 TGAACATGCGTTAAATACTCGAGTTA 59.192 34.615 25.44 7.43 34.75 2.24
4293 5521 5.636121 TGAACATGCGTTAAATACTCGAGTT 59.364 36.000 25.44 8.59 34.75 3.01
4294 5522 5.165676 TGAACATGCGTTAAATACTCGAGT 58.834 37.500 23.66 23.66 34.75 4.18
4295 5523 5.696260 TGAACATGCGTTAAATACTCGAG 57.304 39.130 11.84 11.84 34.75 4.04
4296 5524 5.579119 ACATGAACATGCGTTAAATACTCGA 59.421 36.000 13.71 0.00 42.39 4.04
4297 5525 5.795766 ACATGAACATGCGTTAAATACTCG 58.204 37.500 13.71 0.00 42.39 4.18
4298 5526 8.009974 GGATACATGAACATGCGTTAAATACTC 58.990 37.037 13.71 0.00 42.39 2.59
4299 5527 7.041372 GGGATACATGAACATGCGTTAAATACT 60.041 37.037 13.71 0.00 42.39 2.12
4300 5528 7.041372 AGGGATACATGAACATGCGTTAAATAC 60.041 37.037 13.71 1.35 42.39 1.89
4301 5529 6.995686 AGGGATACATGAACATGCGTTAAATA 59.004 34.615 13.71 0.00 42.39 1.40
4302 5530 5.827797 AGGGATACATGAACATGCGTTAAAT 59.172 36.000 13.71 0.00 42.39 1.40
4303 5531 5.189928 AGGGATACATGAACATGCGTTAAA 58.810 37.500 13.71 0.00 42.39 1.52
4304 5532 4.776349 AGGGATACATGAACATGCGTTAA 58.224 39.130 13.71 0.00 42.39 2.01
4305 5533 4.415881 AGGGATACATGAACATGCGTTA 57.584 40.909 13.71 1.33 42.39 3.18
4306 5534 3.281727 AGGGATACATGAACATGCGTT 57.718 42.857 13.71 0.56 42.39 4.84
4307 5535 4.040339 TCATAGGGATACATGAACATGCGT 59.960 41.667 13.71 3.91 42.39 5.24
4308 5536 4.568956 TCATAGGGATACATGAACATGCG 58.431 43.478 13.71 0.00 42.39 4.73
4309 5537 5.942236 ACATCATAGGGATACATGAACATGC 59.058 40.000 13.71 0.00 36.85 4.06
4310 5538 7.550551 GGTACATCATAGGGATACATGAACATG 59.449 40.741 12.43 12.43 38.29 3.21
4311 5539 7.579531 CGGTACATCATAGGGATACATGAACAT 60.580 40.741 0.00 0.00 34.96 2.71
4312 5540 6.295067 CGGTACATCATAGGGATACATGAACA 60.295 42.308 0.00 0.00 34.96 3.18
4313 5541 6.100004 CGGTACATCATAGGGATACATGAAC 58.900 44.000 0.00 0.00 34.96 3.18
4314 5542 5.337250 GCGGTACATCATAGGGATACATGAA 60.337 44.000 0.00 0.00 34.96 2.57
4315 5543 4.159693 GCGGTACATCATAGGGATACATGA 59.840 45.833 0.00 0.00 33.95 3.07
4316 5544 4.160439 AGCGGTACATCATAGGGATACATG 59.840 45.833 0.00 0.00 33.95 3.21
4317 5545 4.353777 AGCGGTACATCATAGGGATACAT 58.646 43.478 0.00 0.00 33.95 2.29
4318 5546 3.774734 AGCGGTACATCATAGGGATACA 58.225 45.455 0.00 0.00 33.95 2.29
4319 5547 4.381718 GGAAGCGGTACATCATAGGGATAC 60.382 50.000 0.00 0.00 33.95 2.24
4320 5548 3.767673 GGAAGCGGTACATCATAGGGATA 59.232 47.826 0.00 0.00 33.95 2.59
4321 5549 2.567615 GGAAGCGGTACATCATAGGGAT 59.432 50.000 0.00 0.00 36.39 3.85
4322 5550 1.968493 GGAAGCGGTACATCATAGGGA 59.032 52.381 0.00 0.00 0.00 4.20
4323 5551 1.336887 CGGAAGCGGTACATCATAGGG 60.337 57.143 0.00 0.00 0.00 3.53
4324 5552 1.340248 ACGGAAGCGGTACATCATAGG 59.660 52.381 0.00 0.00 0.00 2.57
4325 5553 2.607282 GGACGGAAGCGGTACATCATAG 60.607 54.545 0.00 0.00 0.00 2.23
4326 5554 1.338973 GGACGGAAGCGGTACATCATA 59.661 52.381 0.00 0.00 0.00 2.15
4327 5555 0.104304 GGACGGAAGCGGTACATCAT 59.896 55.000 0.00 0.00 0.00 2.45
4328 5556 1.514087 GGACGGAAGCGGTACATCA 59.486 57.895 0.00 0.00 0.00 3.07
4329 5557 1.227176 GGGACGGAAGCGGTACATC 60.227 63.158 0.00 0.00 0.00 3.06
4330 5558 2.897972 GGGACGGAAGCGGTACAT 59.102 61.111 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.