Multiple sequence alignment - TraesCS6A01G359400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G359400 chr6A 100.000 3135 0 0 1 3135 590895813 590892679 0.000000e+00 5790.0
1 TraesCS6A01G359400 chr6D 95.367 2655 117 2 1 2655 441713779 441711131 0.000000e+00 4217.0
2 TraesCS6A01G359400 chr6D 82.995 394 55 11 2654 3039 329903391 329903002 2.310000e-91 346.0
3 TraesCS6A01G359400 chr6B 93.689 2662 149 11 1 2655 667247958 667245309 0.000000e+00 3967.0
4 TraesCS6A01G359400 chr6B 96.970 33 1 0 2279 2311 378258659 378258691 4.370000e-04 56.5
5 TraesCS6A01G359400 chr2D 81.496 2259 347 46 1 2242 31896548 31898752 0.000000e+00 1790.0
6 TraesCS6A01G359400 chr2D 83.992 481 55 14 2655 3134 372453972 372454431 2.870000e-120 442.0
7 TraesCS6A01G359400 chr2D 83.932 473 54 14 2663 3134 372446698 372447149 1.730000e-117 433.0
8 TraesCS6A01G359400 chr2D 79.896 383 55 19 2663 3037 404861323 404860955 8.620000e-66 261.0
9 TraesCS6A01G359400 chr5D 81.024 2245 363 40 1 2230 227544875 227547071 0.000000e+00 1727.0
10 TraesCS6A01G359400 chr2A 80.652 2238 369 43 5 2230 33952448 33954633 0.000000e+00 1676.0
11 TraesCS6A01G359400 chr2A 78.777 1145 194 28 1 1136 33786663 33787767 0.000000e+00 723.0
12 TraesCS6A01G359400 chr5A 80.919 2154 349 38 1 2143 305278802 305280904 0.000000e+00 1644.0
13 TraesCS6A01G359400 chr2B 82.065 1985 302 35 256 2230 52511929 52509989 0.000000e+00 1644.0
14 TraesCS6A01G359400 chr2B 81.459 1974 299 43 265 2230 52223799 52225713 0.000000e+00 1555.0
15 TraesCS6A01G359400 chr5B 80.353 2153 358 43 1 2143 250952240 250954337 0.000000e+00 1572.0
16 TraesCS6A01G359400 chr4D 84.599 474 51 14 2663 3134 116172763 116173216 4.770000e-123 451.0
17 TraesCS6A01G359400 chr4D 82.489 474 59 15 2663 3134 241572269 241571818 8.150000e-106 394.0
18 TraesCS6A01G359400 chr4D 79.577 426 64 19 2654 3070 83418234 83418645 1.840000e-72 283.0
19 TraesCS6A01G359400 chr4D 78.772 391 64 16 2653 3037 334457927 334457550 8.690000e-61 244.0
20 TraesCS6A01G359400 chr1D 84.144 473 53 14 2663 3134 111867465 111867916 3.710000e-119 438.0
21 TraesCS6A01G359400 chr1D 83.784 481 56 14 2655 3134 111874951 111875410 1.340000e-118 436.0
22 TraesCS6A01G359400 chr4A 82.097 391 56 12 2655 3037 235754417 235754033 3.900000e-84 322.0
23 TraesCS6A01G359400 chr4A 96.970 33 1 0 2279 2311 530344522 530344490 4.370000e-04 56.5
24 TraesCS6A01G359400 chr7D 79.897 388 58 17 2654 3034 471246158 471246532 1.850000e-67 267.0
25 TraesCS6A01G359400 chr3D 79.947 379 56 17 2663 3034 327288564 327288929 8.620000e-66 261.0
26 TraesCS6A01G359400 chr3D 79.790 381 55 20 2663 3034 223567244 223567611 1.120000e-64 257.0
27 TraesCS6A01G359400 chr3D 79.683 379 58 18 2663 3034 223574836 223575202 4.010000e-64 255.0
28 TraesCS6A01G359400 chr4B 88.125 160 13 3 2976 3134 579038836 579038682 5.340000e-43 185.0
29 TraesCS6A01G359400 chr4B 87.037 54 7 0 2279 2332 211755853 211755906 9.390000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G359400 chr6A 590892679 590895813 3134 True 5790 5790 100.000 1 3135 1 chr6A.!!$R1 3134
1 TraesCS6A01G359400 chr6D 441711131 441713779 2648 True 4217 4217 95.367 1 2655 1 chr6D.!!$R2 2654
2 TraesCS6A01G359400 chr6B 667245309 667247958 2649 True 3967 3967 93.689 1 2655 1 chr6B.!!$R1 2654
3 TraesCS6A01G359400 chr2D 31896548 31898752 2204 False 1790 1790 81.496 1 2242 1 chr2D.!!$F1 2241
4 TraesCS6A01G359400 chr5D 227544875 227547071 2196 False 1727 1727 81.024 1 2230 1 chr5D.!!$F1 2229
5 TraesCS6A01G359400 chr2A 33952448 33954633 2185 False 1676 1676 80.652 5 2230 1 chr2A.!!$F2 2225
6 TraesCS6A01G359400 chr2A 33786663 33787767 1104 False 723 723 78.777 1 1136 1 chr2A.!!$F1 1135
7 TraesCS6A01G359400 chr5A 305278802 305280904 2102 False 1644 1644 80.919 1 2143 1 chr5A.!!$F1 2142
8 TraesCS6A01G359400 chr2B 52509989 52511929 1940 True 1644 1644 82.065 256 2230 1 chr2B.!!$R1 1974
9 TraesCS6A01G359400 chr2B 52223799 52225713 1914 False 1555 1555 81.459 265 2230 1 chr2B.!!$F1 1965
10 TraesCS6A01G359400 chr5B 250952240 250954337 2097 False 1572 1572 80.353 1 2143 1 chr5B.!!$F1 2142

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 390 2.560504 CAAATCCCCGTCGATTCATGA 58.439 47.619 0.0 0.0 31.14 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2357 1.834263 ACCAATTCCTTCTCCTCCTCG 59.166 52.381 0.0 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 6.484818 AGCAATATTTCACAATTTTGGTGC 57.515 33.333 3.14 0.00 39.27 5.01
115 116 6.265196 ACTTCATAAACAAGATCTTGCCACAA 59.735 34.615 30.95 16.70 44.03 3.33
384 390 2.560504 CAAATCCCCGTCGATTCATGA 58.439 47.619 0.00 0.00 31.14 3.07
635 646 4.665451 TCCTTTCAATCCACATGTGACAT 58.335 39.130 27.46 15.06 0.00 3.06
866 878 6.406177 GGCACCATTAAGTGATGTTCATCAAT 60.406 38.462 15.65 12.54 40.34 2.57
964 976 6.782000 ACCAATATATTATTTGGGCTTGCAGA 59.218 34.615 15.76 0.00 45.45 4.26
1001 1013 7.011576 CGAGTATCTAGATGTGCTATACGGAAT 59.988 40.741 15.79 0.00 0.00 3.01
1016 1028 2.356695 ACGGAATGCGGGCTAAAATAAC 59.643 45.455 0.00 0.00 0.00 1.89
1042 1054 9.703892 CTATCTATGAACCTAAGGTGAAGAATG 57.296 37.037 0.00 0.00 35.34 2.67
1098 1110 9.177608 CAAATTAATGGGAGACAAAGAGTATGA 57.822 33.333 0.00 0.00 0.00 2.15
1186 1198 2.851263 TCACGTTGCTTGGGTAATCT 57.149 45.000 0.00 0.00 0.00 2.40
1415 1432 7.577303 AGGACCACAATACATCATAGATGTTT 58.423 34.615 16.75 7.49 33.76 2.83
1517 1535 6.336842 ATTTTGATGAAAACCTGGAGACAG 57.663 37.500 0.00 0.00 44.11 3.51
1693 1717 8.872845 GGATAATTTCAATTCCACACAAACATC 58.127 33.333 0.00 0.00 0.00 3.06
1767 1791 4.344102 TGATTTATTCTAGGACCCGGTGAG 59.656 45.833 0.00 0.00 0.00 3.51
1860 1884 9.472361 CCATTTCATGAAGGATCAATGTAATTC 57.528 33.333 8.41 0.00 39.49 2.17
1914 1938 1.358402 CCTCATCAGACTCTCCGCG 59.642 63.158 0.00 0.00 0.00 6.46
2101 2125 5.348724 CGGATATAATGACTATGGTGTGCAC 59.651 44.000 10.75 10.75 0.00 4.57
2199 2234 5.418310 AATTTGTCAACTTGGACACGTAG 57.582 39.130 0.00 0.00 46.76 3.51
2275 2316 2.674754 CCACCGGTGTAGGGCATT 59.325 61.111 31.80 0.00 35.02 3.56
2316 2357 8.404000 TCGACAAGTAAGAGTGTAGAAATATCC 58.596 37.037 0.00 0.00 0.00 2.59
2380 2421 6.520272 ACCAATGTAAAAGCTGCAAACATTA 58.480 32.000 16.15 1.81 38.39 1.90
2391 2432 8.693542 AAGCTGCAAACATTATTTGATAGTTC 57.306 30.769 1.02 0.00 0.00 3.01
2409 2450 9.016623 TGATAGTTCGTTTATATCACAAGAACG 57.983 33.333 0.00 0.00 43.01 3.95
2487 2528 3.418684 AAGACAAGCCGGTTGAAGTAT 57.581 42.857 17.00 2.61 38.60 2.12
2519 2560 7.219322 TGATCAAATCAATATCGAGGACACAT 58.781 34.615 0.00 0.00 36.11 3.21
2655 2696 2.005451 GCATAGAGACCAACTGCAGTG 58.995 52.381 22.49 11.68 33.13 3.66
2656 2697 2.613977 GCATAGAGACCAACTGCAGTGT 60.614 50.000 22.49 15.32 33.13 3.55
2657 2698 2.820059 TAGAGACCAACTGCAGTGTG 57.180 50.000 22.49 19.09 0.00 3.82
2658 2699 1.123077 AGAGACCAACTGCAGTGTGA 58.877 50.000 22.49 0.00 0.00 3.58
2659 2700 1.202580 AGAGACCAACTGCAGTGTGAC 60.203 52.381 22.49 14.44 0.00 3.67
2660 2701 0.541392 AGACCAACTGCAGTGTGACA 59.459 50.000 22.49 0.00 0.00 3.58
2661 2702 1.065491 AGACCAACTGCAGTGTGACAA 60.065 47.619 22.49 0.00 0.00 3.18
2662 2703 1.064060 GACCAACTGCAGTGTGACAAC 59.936 52.381 22.49 5.08 0.00 3.32
2663 2704 0.381801 CCAACTGCAGTGTGACAACC 59.618 55.000 22.49 0.00 0.00 3.77
2664 2705 0.381801 CAACTGCAGTGTGACAACCC 59.618 55.000 22.49 0.00 0.00 4.11
2665 2706 1.095228 AACTGCAGTGTGACAACCCG 61.095 55.000 22.49 0.00 0.00 5.28
2666 2707 1.227527 CTGCAGTGTGACAACCCGA 60.228 57.895 5.25 0.00 0.00 5.14
2667 2708 1.224069 CTGCAGTGTGACAACCCGAG 61.224 60.000 5.25 0.00 0.00 4.63
2668 2709 1.069090 GCAGTGTGACAACCCGAGA 59.931 57.895 0.00 0.00 0.00 4.04
2669 2710 1.222115 GCAGTGTGACAACCCGAGAC 61.222 60.000 0.00 0.00 0.00 3.36
2670 2711 0.600255 CAGTGTGACAACCCGAGACC 60.600 60.000 0.00 0.00 0.00 3.85
2671 2712 1.663702 GTGTGACAACCCGAGACCG 60.664 63.158 0.00 0.00 0.00 4.79
2672 2713 1.829096 TGTGACAACCCGAGACCGA 60.829 57.895 0.00 0.00 38.22 4.69
2673 2714 1.183030 TGTGACAACCCGAGACCGAT 61.183 55.000 0.00 0.00 38.22 4.18
2674 2715 0.736325 GTGACAACCCGAGACCGATG 60.736 60.000 0.00 0.00 38.22 3.84
2675 2716 1.810030 GACAACCCGAGACCGATGC 60.810 63.158 0.00 0.00 38.22 3.91
2676 2717 2.227089 GACAACCCGAGACCGATGCT 62.227 60.000 0.00 0.00 38.22 3.79
2677 2718 1.519455 CAACCCGAGACCGATGCTC 60.519 63.158 0.00 0.00 38.22 4.26
2678 2719 2.722201 AACCCGAGACCGATGCTCC 61.722 63.158 0.00 0.00 38.22 4.70
2679 2720 3.147595 CCCGAGACCGATGCTCCA 61.148 66.667 0.00 0.00 38.22 3.86
2680 2721 2.415010 CCGAGACCGATGCTCCAG 59.585 66.667 0.00 0.00 38.22 3.86
2681 2722 2.121538 CCGAGACCGATGCTCCAGA 61.122 63.158 0.00 0.00 38.22 3.86
2682 2723 1.064946 CGAGACCGATGCTCCAGAC 59.935 63.158 0.00 0.00 38.22 3.51
2683 2724 1.439644 GAGACCGATGCTCCAGACC 59.560 63.158 0.00 0.00 0.00 3.85
2684 2725 1.305297 AGACCGATGCTCCAGACCA 60.305 57.895 0.00 0.00 0.00 4.02
2685 2726 1.153549 GACCGATGCTCCAGACCAC 60.154 63.158 0.00 0.00 0.00 4.16
2686 2727 1.608717 GACCGATGCTCCAGACCACT 61.609 60.000 0.00 0.00 0.00 4.00
2687 2728 1.194781 ACCGATGCTCCAGACCACTT 61.195 55.000 0.00 0.00 0.00 3.16
2688 2729 0.036010 CCGATGCTCCAGACCACTTT 60.036 55.000 0.00 0.00 0.00 2.66
2689 2730 1.363744 CGATGCTCCAGACCACTTTC 58.636 55.000 0.00 0.00 0.00 2.62
2690 2731 1.338105 CGATGCTCCAGACCACTTTCA 60.338 52.381 0.00 0.00 0.00 2.69
2691 2732 2.679059 CGATGCTCCAGACCACTTTCAT 60.679 50.000 0.00 0.00 0.00 2.57
2692 2733 2.189594 TGCTCCAGACCACTTTCATG 57.810 50.000 0.00 0.00 0.00 3.07
2693 2734 1.421268 TGCTCCAGACCACTTTCATGT 59.579 47.619 0.00 0.00 0.00 3.21
2694 2735 2.158623 TGCTCCAGACCACTTTCATGTT 60.159 45.455 0.00 0.00 0.00 2.71
2695 2736 2.887152 GCTCCAGACCACTTTCATGTTT 59.113 45.455 0.00 0.00 0.00 2.83
2696 2737 3.057946 GCTCCAGACCACTTTCATGTTTC 60.058 47.826 0.00 0.00 0.00 2.78
2697 2738 4.392940 CTCCAGACCACTTTCATGTTTCT 58.607 43.478 0.00 0.00 0.00 2.52
2698 2739 4.389374 TCCAGACCACTTTCATGTTTCTC 58.611 43.478 0.00 0.00 0.00 2.87
2699 2740 3.187227 CCAGACCACTTTCATGTTTCTCG 59.813 47.826 0.00 0.00 0.00 4.04
2700 2741 3.809832 CAGACCACTTTCATGTTTCTCGT 59.190 43.478 0.00 0.00 0.00 4.18
2701 2742 4.273480 CAGACCACTTTCATGTTTCTCGTT 59.727 41.667 0.00 0.00 0.00 3.85
2702 2743 4.273480 AGACCACTTTCATGTTTCTCGTTG 59.727 41.667 0.00 0.00 0.00 4.10
2703 2744 3.945285 ACCACTTTCATGTTTCTCGTTGT 59.055 39.130 0.00 0.00 0.00 3.32
2704 2745 4.035208 ACCACTTTCATGTTTCTCGTTGTC 59.965 41.667 0.00 0.00 0.00 3.18
2705 2746 4.035091 CCACTTTCATGTTTCTCGTTGTCA 59.965 41.667 0.00 0.00 0.00 3.58
2706 2747 5.200454 CACTTTCATGTTTCTCGTTGTCAG 58.800 41.667 0.00 0.00 0.00 3.51
2707 2748 3.878086 TTCATGTTTCTCGTTGTCAGC 57.122 42.857 0.00 0.00 0.00 4.26
2708 2749 1.792367 TCATGTTTCTCGTTGTCAGCG 59.208 47.619 2.22 2.22 0.00 5.18
2709 2750 1.526887 CATGTTTCTCGTTGTCAGCGT 59.473 47.619 9.00 0.00 0.00 5.07
2710 2751 0.927537 TGTTTCTCGTTGTCAGCGTG 59.072 50.000 9.00 6.88 0.00 5.34
2711 2752 0.928229 GTTTCTCGTTGTCAGCGTGT 59.072 50.000 9.00 0.00 0.00 4.49
2712 2753 1.071436 GTTTCTCGTTGTCAGCGTGTC 60.071 52.381 9.00 0.03 0.00 3.67
2713 2754 0.384309 TTCTCGTTGTCAGCGTGTCT 59.616 50.000 9.00 0.00 0.00 3.41
2714 2755 0.384309 TCTCGTTGTCAGCGTGTCTT 59.616 50.000 9.00 0.00 0.00 3.01
2715 2756 0.778815 CTCGTTGTCAGCGTGTCTTC 59.221 55.000 9.00 0.00 0.00 2.87
2716 2757 0.384309 TCGTTGTCAGCGTGTCTTCT 59.616 50.000 9.00 0.00 0.00 2.85
2717 2758 1.202371 TCGTTGTCAGCGTGTCTTCTT 60.202 47.619 9.00 0.00 0.00 2.52
2718 2759 1.593006 CGTTGTCAGCGTGTCTTCTTT 59.407 47.619 0.28 0.00 0.00 2.52
2719 2760 2.030457 CGTTGTCAGCGTGTCTTCTTTT 59.970 45.455 0.28 0.00 0.00 2.27
2720 2761 3.244345 CGTTGTCAGCGTGTCTTCTTTTA 59.756 43.478 0.28 0.00 0.00 1.52
2721 2762 4.084537 CGTTGTCAGCGTGTCTTCTTTTAT 60.085 41.667 0.28 0.00 0.00 1.40
2722 2763 5.558273 CGTTGTCAGCGTGTCTTCTTTTATT 60.558 40.000 0.28 0.00 0.00 1.40
2723 2764 6.199393 GTTGTCAGCGTGTCTTCTTTTATTT 58.801 36.000 0.00 0.00 0.00 1.40
2724 2765 5.747565 TGTCAGCGTGTCTTCTTTTATTTG 58.252 37.500 0.00 0.00 0.00 2.32
2725 2766 5.295787 TGTCAGCGTGTCTTCTTTTATTTGT 59.704 36.000 0.00 0.00 0.00 2.83
2726 2767 6.183360 TGTCAGCGTGTCTTCTTTTATTTGTT 60.183 34.615 0.00 0.00 0.00 2.83
2727 2768 6.691388 GTCAGCGTGTCTTCTTTTATTTGTTT 59.309 34.615 0.00 0.00 0.00 2.83
2728 2769 6.690957 TCAGCGTGTCTTCTTTTATTTGTTTG 59.309 34.615 0.00 0.00 0.00 2.93
2729 2770 6.472163 CAGCGTGTCTTCTTTTATTTGTTTGT 59.528 34.615 0.00 0.00 0.00 2.83
2730 2771 7.009174 CAGCGTGTCTTCTTTTATTTGTTTGTT 59.991 33.333 0.00 0.00 0.00 2.83
2731 2772 7.009174 AGCGTGTCTTCTTTTATTTGTTTGTTG 59.991 33.333 0.00 0.00 0.00 3.33
2732 2773 7.110511 CGTGTCTTCTTTTATTTGTTTGTTGC 58.889 34.615 0.00 0.00 0.00 4.17
2733 2774 7.009174 CGTGTCTTCTTTTATTTGTTTGTTGCT 59.991 33.333 0.00 0.00 0.00 3.91
2734 2775 8.655970 GTGTCTTCTTTTATTTGTTTGTTGCTT 58.344 29.630 0.00 0.00 0.00 3.91
2735 2776 9.213799 TGTCTTCTTTTATTTGTTTGTTGCTTT 57.786 25.926 0.00 0.00 0.00 3.51
2741 2782 9.985318 CTTTTATTTGTTTGTTGCTTTTCATCA 57.015 25.926 0.00 0.00 0.00 3.07
2744 2785 5.886715 TTGTTTGTTGCTTTTCATCATCG 57.113 34.783 0.00 0.00 0.00 3.84
2745 2786 3.735240 TGTTTGTTGCTTTTCATCATCGC 59.265 39.130 0.00 0.00 0.00 4.58
2746 2787 3.639716 TTGTTGCTTTTCATCATCGCA 57.360 38.095 0.00 0.00 0.00 5.10
2747 2788 3.853831 TGTTGCTTTTCATCATCGCAT 57.146 38.095 0.00 0.00 0.00 4.73
2748 2789 3.761657 TGTTGCTTTTCATCATCGCATC 58.238 40.909 0.00 0.00 0.00 3.91
2749 2790 3.190953 TGTTGCTTTTCATCATCGCATCA 59.809 39.130 0.00 0.00 0.00 3.07
2750 2791 4.142337 TGTTGCTTTTCATCATCGCATCAT 60.142 37.500 0.00 0.00 0.00 2.45
2751 2792 4.642445 TGCTTTTCATCATCGCATCATT 57.358 36.364 0.00 0.00 0.00 2.57
2752 2793 4.603985 TGCTTTTCATCATCGCATCATTC 58.396 39.130 0.00 0.00 0.00 2.67
2753 2794 3.662645 GCTTTTCATCATCGCATCATTCG 59.337 43.478 0.00 0.00 0.00 3.34
2754 2795 2.955607 TTCATCATCGCATCATTCGC 57.044 45.000 0.00 0.00 0.00 4.70
2755 2796 2.159327 TCATCATCGCATCATTCGCT 57.841 45.000 0.00 0.00 0.00 4.93
2756 2797 2.486918 TCATCATCGCATCATTCGCTT 58.513 42.857 0.00 0.00 0.00 4.68
2757 2798 2.874086 TCATCATCGCATCATTCGCTTT 59.126 40.909 0.00 0.00 0.00 3.51
2758 2799 2.742954 TCATCGCATCATTCGCTTTG 57.257 45.000 0.00 0.00 0.00 2.77
2759 2800 1.118033 CATCGCATCATTCGCTTTGC 58.882 50.000 0.00 0.00 0.00 3.68
2760 2801 0.734309 ATCGCATCATTCGCTTTGCA 59.266 45.000 0.00 0.00 34.80 4.08
2761 2802 0.734309 TCGCATCATTCGCTTTGCAT 59.266 45.000 0.00 0.00 34.80 3.96
2762 2803 1.118033 CGCATCATTCGCTTTGCATC 58.882 50.000 0.00 0.00 34.80 3.91
2763 2804 1.118033 GCATCATTCGCTTTGCATCG 58.882 50.000 0.00 0.00 35.22 3.84
2764 2805 1.750351 CATCATTCGCTTTGCATCGG 58.250 50.000 0.00 0.00 0.00 4.18
2765 2806 0.029834 ATCATTCGCTTTGCATCGGC 59.970 50.000 0.00 0.00 41.68 5.54
2775 2816 2.778679 GCATCGGCACTCGTTGTC 59.221 61.111 0.00 0.00 39.85 3.18
2780 2821 4.261888 GGCACTCGTTGTCGTCAT 57.738 55.556 0.00 0.00 38.33 3.06
2781 2822 2.528797 GGCACTCGTTGTCGTCATT 58.471 52.632 0.00 0.00 38.33 2.57
2782 2823 0.163788 GGCACTCGTTGTCGTCATTG 59.836 55.000 0.00 0.00 38.33 2.82
2783 2824 0.859232 GCACTCGTTGTCGTCATTGT 59.141 50.000 0.00 0.00 38.33 2.71
2784 2825 1.260561 GCACTCGTTGTCGTCATTGTT 59.739 47.619 0.00 0.00 38.33 2.83
2785 2826 2.286184 GCACTCGTTGTCGTCATTGTTT 60.286 45.455 0.00 0.00 38.33 2.83
2786 2827 3.787476 GCACTCGTTGTCGTCATTGTTTT 60.787 43.478 0.00 0.00 38.33 2.43
2787 2828 4.551217 GCACTCGTTGTCGTCATTGTTTTA 60.551 41.667 0.00 0.00 38.33 1.52
2788 2829 5.494618 CACTCGTTGTCGTCATTGTTTTAA 58.505 37.500 0.00 0.00 38.33 1.52
2789 2830 5.960683 CACTCGTTGTCGTCATTGTTTTAAA 59.039 36.000 0.00 0.00 38.33 1.52
2790 2831 6.466413 CACTCGTTGTCGTCATTGTTTTAAAA 59.534 34.615 0.00 0.00 38.33 1.52
2791 2832 6.466730 ACTCGTTGTCGTCATTGTTTTAAAAC 59.533 34.615 21.66 21.66 37.59 2.43
2792 2833 6.544622 TCGTTGTCGTCATTGTTTTAAAACT 58.455 32.000 26.76 9.40 37.76 2.66
2793 2834 7.022384 TCGTTGTCGTCATTGTTTTAAAACTT 58.978 30.769 26.76 14.63 37.76 2.66
2794 2835 7.007546 TCGTTGTCGTCATTGTTTTAAAACTTG 59.992 33.333 26.76 22.89 37.76 3.16
2795 2836 6.561945 TGTCGTCATTGTTTTAAAACTTGC 57.438 33.333 26.76 18.38 39.59 4.01
2796 2837 6.093404 TGTCGTCATTGTTTTAAAACTTGCA 58.907 32.000 26.76 15.72 39.59 4.08
2797 2838 6.754209 TGTCGTCATTGTTTTAAAACTTGCAT 59.246 30.769 26.76 13.60 39.59 3.96
2798 2839 7.043722 TGTCGTCATTGTTTTAAAACTTGCATC 60.044 33.333 26.76 16.64 39.59 3.91
2799 2840 7.167468 GTCGTCATTGTTTTAAAACTTGCATCT 59.833 33.333 26.76 5.92 39.59 2.90
2800 2841 8.346300 TCGTCATTGTTTTAAAACTTGCATCTA 58.654 29.630 26.76 6.09 39.59 1.98
2801 2842 8.417176 CGTCATTGTTTTAAAACTTGCATCTAC 58.583 33.333 26.76 16.93 39.59 2.59
2802 2843 9.463443 GTCATTGTTTTAAAACTTGCATCTACT 57.537 29.630 26.76 1.27 39.59 2.57
2803 2844 9.677567 TCATTGTTTTAAAACTTGCATCTACTC 57.322 29.630 26.76 1.81 39.59 2.59
2804 2845 8.629986 CATTGTTTTAAAACTTGCATCTACTCG 58.370 33.333 26.76 3.42 39.59 4.18
2805 2846 7.254227 TGTTTTAAAACTTGCATCTACTCGT 57.746 32.000 26.76 0.00 39.59 4.18
2806 2847 8.367943 TGTTTTAAAACTTGCATCTACTCGTA 57.632 30.769 26.76 3.18 39.59 3.43
2807 2848 8.492748 TGTTTTAAAACTTGCATCTACTCGTAG 58.507 33.333 26.76 0.00 39.59 3.51
2808 2849 8.493547 GTTTTAAAACTTGCATCTACTCGTAGT 58.506 33.333 21.27 0.00 36.03 2.73
2809 2850 8.597662 TTTAAAACTTGCATCTACTCGTAGTT 57.402 30.769 4.19 0.00 34.84 2.24
2810 2851 6.467723 AAAACTTGCATCTACTCGTAGTTG 57.532 37.500 9.66 9.66 36.47 3.16
2813 2854 1.478137 GCATCTACTCGTAGTTGCCG 58.522 55.000 21.20 3.95 45.85 5.69
2814 2855 1.478137 CATCTACTCGTAGTTGCCGC 58.522 55.000 4.19 0.00 34.84 6.53
2815 2856 1.065701 CATCTACTCGTAGTTGCCGCT 59.934 52.381 4.19 0.00 34.84 5.52
2816 2857 1.171308 TCTACTCGTAGTTGCCGCTT 58.829 50.000 4.19 0.00 34.84 4.68
2817 2858 1.131883 TCTACTCGTAGTTGCCGCTTC 59.868 52.381 4.19 0.00 34.84 3.86
2818 2859 1.132643 CTACTCGTAGTTGCCGCTTCT 59.867 52.381 0.00 0.00 0.00 2.85
2819 2860 0.109226 ACTCGTAGTTGCCGCTTCTC 60.109 55.000 0.00 0.00 0.00 2.87
2820 2861 1.134530 CTCGTAGTTGCCGCTTCTCG 61.135 60.000 0.00 0.00 38.08 4.04
2821 2862 2.789203 CGTAGTTGCCGCTTCTCGC 61.789 63.158 0.00 0.00 36.73 5.03
2822 2863 1.446272 GTAGTTGCCGCTTCTCGCT 60.446 57.895 0.00 0.00 36.73 4.93
2823 2864 1.014564 GTAGTTGCCGCTTCTCGCTT 61.015 55.000 0.00 0.00 36.73 4.68
2824 2865 0.320421 TAGTTGCCGCTTCTCGCTTT 60.320 50.000 0.00 0.00 36.73 3.51
2825 2866 1.441016 GTTGCCGCTTCTCGCTTTG 60.441 57.895 0.00 0.00 36.73 2.77
2826 2867 1.891919 TTGCCGCTTCTCGCTTTGT 60.892 52.632 0.00 0.00 36.73 2.83
2827 2868 1.841663 TTGCCGCTTCTCGCTTTGTC 61.842 55.000 0.00 0.00 36.73 3.18
2828 2869 2.029844 GCCGCTTCTCGCTTTGTCT 61.030 57.895 0.00 0.00 36.73 3.41
2829 2870 1.960994 GCCGCTTCTCGCTTTGTCTC 61.961 60.000 0.00 0.00 36.73 3.36
2830 2871 1.355066 CCGCTTCTCGCTTTGTCTCC 61.355 60.000 0.00 0.00 36.73 3.71
2831 2872 1.678269 CGCTTCTCGCTTTGTCTCCG 61.678 60.000 0.00 0.00 36.13 4.63
2832 2873 0.667792 GCTTCTCGCTTTGTCTCCGT 60.668 55.000 0.00 0.00 35.14 4.69
2833 2874 1.784525 CTTCTCGCTTTGTCTCCGTT 58.215 50.000 0.00 0.00 0.00 4.44
2834 2875 1.457303 CTTCTCGCTTTGTCTCCGTTG 59.543 52.381 0.00 0.00 0.00 4.10
2835 2876 0.671796 TCTCGCTTTGTCTCCGTTGA 59.328 50.000 0.00 0.00 0.00 3.18
2836 2877 0.784778 CTCGCTTTGTCTCCGTTGAC 59.215 55.000 0.00 0.00 37.47 3.18
2837 2878 0.599204 TCGCTTTGTCTCCGTTGACC 60.599 55.000 3.19 0.00 36.21 4.02
2838 2879 0.600255 CGCTTTGTCTCCGTTGACCT 60.600 55.000 3.19 0.00 36.21 3.85
2839 2880 1.594331 GCTTTGTCTCCGTTGACCTT 58.406 50.000 3.19 0.00 36.21 3.50
2840 2881 1.947456 GCTTTGTCTCCGTTGACCTTT 59.053 47.619 3.19 0.00 36.21 3.11
2841 2882 2.357952 GCTTTGTCTCCGTTGACCTTTT 59.642 45.455 3.19 0.00 36.21 2.27
2842 2883 3.792124 GCTTTGTCTCCGTTGACCTTTTG 60.792 47.826 3.19 0.00 36.21 2.44
2843 2884 2.702592 TGTCTCCGTTGACCTTTTGT 57.297 45.000 3.19 0.00 36.21 2.83
2844 2885 2.557317 TGTCTCCGTTGACCTTTTGTC 58.443 47.619 3.19 0.00 44.72 3.18
2852 2893 3.341263 GACCTTTTGTCAGGACCCC 57.659 57.895 0.00 0.00 43.85 4.95
2853 2894 0.771755 GACCTTTTGTCAGGACCCCT 59.228 55.000 0.00 0.00 43.85 4.79
2854 2895 1.145119 GACCTTTTGTCAGGACCCCTT 59.855 52.381 0.00 0.00 43.85 3.95
2855 2896 1.133482 ACCTTTTGTCAGGACCCCTTG 60.133 52.381 0.00 0.00 37.39 3.61
2856 2897 1.133482 CCTTTTGTCAGGACCCCTTGT 60.133 52.381 0.00 0.00 35.71 3.16
2857 2898 2.230660 CTTTTGTCAGGACCCCTTGTC 58.769 52.381 0.00 0.00 43.67 3.18
2858 2899 1.518367 TTTGTCAGGACCCCTTGTCT 58.482 50.000 0.00 0.00 43.89 3.41
2859 2900 1.518367 TTGTCAGGACCCCTTGTCTT 58.482 50.000 0.00 0.00 43.89 3.01
2860 2901 1.518367 TGTCAGGACCCCTTGTCTTT 58.482 50.000 0.00 0.00 43.89 2.52
2861 2902 1.142870 TGTCAGGACCCCTTGTCTTTG 59.857 52.381 0.00 0.00 43.89 2.77
2862 2903 1.143073 GTCAGGACCCCTTGTCTTTGT 59.857 52.381 0.00 0.00 43.89 2.83
2863 2904 1.420138 TCAGGACCCCTTGTCTTTGTC 59.580 52.381 0.00 0.00 43.89 3.18
2864 2905 0.396811 AGGACCCCTTGTCTTTGTCG 59.603 55.000 0.00 0.00 43.89 4.35
2865 2906 0.395312 GGACCCCTTGTCTTTGTCGA 59.605 55.000 0.00 0.00 43.89 4.20
2866 2907 1.509703 GACCCCTTGTCTTTGTCGAC 58.490 55.000 9.11 9.11 41.03 4.20
2867 2908 0.108019 ACCCCTTGTCTTTGTCGACC 59.892 55.000 14.12 0.00 32.97 4.79
2868 2909 0.396811 CCCCTTGTCTTTGTCGACCT 59.603 55.000 14.12 0.00 32.97 3.85
2869 2910 1.608283 CCCCTTGTCTTTGTCGACCTC 60.608 57.143 14.12 0.00 32.97 3.85
2870 2911 1.344763 CCCTTGTCTTTGTCGACCTCT 59.655 52.381 14.12 0.00 32.97 3.69
2871 2912 2.610727 CCCTTGTCTTTGTCGACCTCTC 60.611 54.545 14.12 0.68 32.97 3.20
2872 2913 2.297597 CCTTGTCTTTGTCGACCTCTCT 59.702 50.000 14.12 0.00 32.97 3.10
2873 2914 3.570559 CTTGTCTTTGTCGACCTCTCTC 58.429 50.000 14.12 0.16 32.97 3.20
2874 2915 2.583143 TGTCTTTGTCGACCTCTCTCA 58.417 47.619 14.12 2.88 32.97 3.27
2875 2916 2.956333 TGTCTTTGTCGACCTCTCTCAA 59.044 45.455 14.12 0.00 32.97 3.02
2876 2917 3.383505 TGTCTTTGTCGACCTCTCTCAAA 59.616 43.478 14.12 4.07 32.97 2.69
2877 2918 3.736759 GTCTTTGTCGACCTCTCTCAAAC 59.263 47.826 14.12 0.00 0.00 2.93
2878 2919 2.814280 TTGTCGACCTCTCTCAAACC 57.186 50.000 14.12 0.00 0.00 3.27
2879 2920 0.966920 TGTCGACCTCTCTCAAACCC 59.033 55.000 14.12 0.00 0.00 4.11
2880 2921 0.246910 GTCGACCTCTCTCAAACCCC 59.753 60.000 3.51 0.00 0.00 4.95
2881 2922 0.903454 TCGACCTCTCTCAAACCCCC 60.903 60.000 0.00 0.00 0.00 5.40
2899 2940 4.717629 CTCGCGTGCCCGTCTGAA 62.718 66.667 5.77 0.00 36.15 3.02
2900 2941 4.287781 TCGCGTGCCCGTCTGAAA 62.288 61.111 5.77 0.00 36.15 2.69
2901 2942 3.777925 CGCGTGCCCGTCTGAAAG 61.778 66.667 0.00 0.00 36.15 2.62
2902 2943 2.665185 GCGTGCCCGTCTGAAAGT 60.665 61.111 0.00 0.00 36.15 2.66
2903 2944 2.251642 GCGTGCCCGTCTGAAAGTT 61.252 57.895 0.00 0.00 36.15 2.66
2904 2945 1.569493 CGTGCCCGTCTGAAAGTTG 59.431 57.895 0.00 0.00 33.76 3.16
2905 2946 1.157870 CGTGCCCGTCTGAAAGTTGT 61.158 55.000 0.00 0.00 33.76 3.32
2906 2947 0.586802 GTGCCCGTCTGAAAGTTGTC 59.413 55.000 0.00 0.00 33.76 3.18
2907 2948 0.534203 TGCCCGTCTGAAAGTTGTCC 60.534 55.000 0.00 0.00 33.76 4.02
2908 2949 1.235281 GCCCGTCTGAAAGTTGTCCC 61.235 60.000 0.00 0.00 33.76 4.46
2909 2950 0.949105 CCCGTCTGAAAGTTGTCCCG 60.949 60.000 0.00 0.00 33.76 5.14
2910 2951 0.032952 CCGTCTGAAAGTTGTCCCGA 59.967 55.000 0.00 0.00 33.76 5.14
2911 2952 1.539496 CCGTCTGAAAGTTGTCCCGAA 60.539 52.381 0.00 0.00 33.76 4.30
2912 2953 1.525619 CGTCTGAAAGTTGTCCCGAAC 59.474 52.381 0.00 0.00 33.76 3.95
2913 2954 1.871676 GTCTGAAAGTTGTCCCGAACC 59.128 52.381 0.00 0.00 33.76 3.62
2914 2955 1.202722 TCTGAAAGTTGTCCCGAACCC 60.203 52.381 0.00 0.00 33.76 4.11
2915 2956 0.533308 TGAAAGTTGTCCCGAACCCG 60.533 55.000 0.00 0.00 0.00 5.28
2916 2957 0.249996 GAAAGTTGTCCCGAACCCGA 60.250 55.000 0.00 0.00 38.22 5.14
2917 2958 0.533531 AAAGTTGTCCCGAACCCGAC 60.534 55.000 0.00 0.00 38.22 4.79
2918 2959 2.357881 GTTGTCCCGAACCCGACC 60.358 66.667 0.00 0.00 38.22 4.79
2919 2960 3.628982 TTGTCCCGAACCCGACCC 61.629 66.667 0.00 0.00 38.22 4.46
2932 2973 4.736896 GACCCGGGCAGTCGTGAC 62.737 72.222 24.08 0.00 0.00 3.67
2937 2978 2.509336 GGGCAGTCGTGACCGATG 60.509 66.667 0.00 0.00 44.19 3.84
2938 2979 2.509336 GGCAGTCGTGACCGATGG 60.509 66.667 0.00 0.00 46.30 3.51
2939 2980 2.509336 GCAGTCGTGACCGATGGG 60.509 66.667 0.00 0.00 46.30 4.00
2948 2989 2.042333 ACCGATGGGTCCGGATCA 60.042 61.111 18.43 14.71 46.01 2.92
2949 2990 1.459539 ACCGATGGGTCCGGATCAT 60.460 57.895 18.43 18.82 46.01 2.45
2950 2991 1.472662 ACCGATGGGTCCGGATCATC 61.473 60.000 27.26 27.26 46.01 2.92
2951 2992 1.293498 CGATGGGTCCGGATCATCC 59.707 63.158 29.12 18.65 35.22 3.51
2952 2993 1.679898 GATGGGTCCGGATCATCCC 59.320 63.158 27.00 23.61 40.26 3.85
2953 2994 1.842381 GATGGGTCCGGATCATCCCC 61.842 65.000 27.00 23.31 39.20 4.81
2954 2995 2.447765 GGGTCCGGATCATCCCCA 60.448 66.667 18.43 0.00 35.32 4.96
2955 2996 2.076184 GGGTCCGGATCATCCCCAA 61.076 63.158 18.43 0.00 35.32 4.12
2956 2997 1.641552 GGGTCCGGATCATCCCCAAA 61.642 60.000 18.43 0.00 35.32 3.28
2957 2998 0.465642 GGTCCGGATCATCCCCAAAC 60.466 60.000 10.69 0.00 31.13 2.93
2958 2999 0.254747 GTCCGGATCATCCCCAAACA 59.745 55.000 7.81 0.00 31.13 2.83
2959 3000 1.133792 GTCCGGATCATCCCCAAACAT 60.134 52.381 7.81 0.00 31.13 2.71
2960 3001 1.142870 TCCGGATCATCCCCAAACATC 59.857 52.381 0.00 0.00 31.13 3.06
2961 3002 1.609208 CGGATCATCCCCAAACATCC 58.391 55.000 0.00 0.00 31.13 3.51
2962 3003 1.143684 CGGATCATCCCCAAACATCCT 59.856 52.381 0.00 0.00 32.24 3.24
2963 3004 2.423373 CGGATCATCCCCAAACATCCTT 60.423 50.000 0.00 0.00 32.24 3.36
2964 3005 3.181445 CGGATCATCCCCAAACATCCTTA 60.181 47.826 0.00 0.00 32.24 2.69
2965 3006 4.688597 CGGATCATCCCCAAACATCCTTAA 60.689 45.833 0.00 0.00 32.24 1.85
2966 3007 5.208121 GGATCATCCCCAAACATCCTTAAA 58.792 41.667 0.00 0.00 31.78 1.52
2967 3008 5.660864 GGATCATCCCCAAACATCCTTAAAA 59.339 40.000 0.00 0.00 31.78 1.52
2968 3009 6.327365 GGATCATCCCCAAACATCCTTAAAAT 59.673 38.462 0.00 0.00 31.78 1.82
2969 3010 7.508977 GGATCATCCCCAAACATCCTTAAAATA 59.491 37.037 0.00 0.00 31.78 1.40
2970 3011 9.093458 GATCATCCCCAAACATCCTTAAAATAT 57.907 33.333 0.00 0.00 0.00 1.28
2971 3012 8.248904 TCATCCCCAAACATCCTTAAAATATG 57.751 34.615 0.00 0.00 0.00 1.78
2972 3013 7.843760 TCATCCCCAAACATCCTTAAAATATGT 59.156 33.333 0.00 0.00 35.40 2.29
2973 3014 8.485392 CATCCCCAAACATCCTTAAAATATGTT 58.515 33.333 0.00 0.00 43.74 2.71
2974 3015 8.073467 TCCCCAAACATCCTTAAAATATGTTC 57.927 34.615 9.09 0.00 41.67 3.18
2975 3016 6.978080 CCCCAAACATCCTTAAAATATGTTCG 59.022 38.462 9.09 1.29 41.67 3.95
2976 3017 7.363443 CCCCAAACATCCTTAAAATATGTTCGT 60.363 37.037 9.09 0.00 41.67 3.85
2977 3018 8.032451 CCCAAACATCCTTAAAATATGTTCGTT 58.968 33.333 9.09 0.00 41.67 3.85
2978 3019 9.418045 CCAAACATCCTTAAAATATGTTCGTTT 57.582 29.630 9.09 0.00 41.67 3.60
2993 3034 6.249035 TGTTCGTTTTATTCATTGGACTCC 57.751 37.500 0.00 0.00 0.00 3.85
2994 3035 5.182380 TGTTCGTTTTATTCATTGGACTCCC 59.818 40.000 0.00 0.00 0.00 4.30
2995 3036 5.174037 TCGTTTTATTCATTGGACTCCCT 57.826 39.130 0.00 0.00 0.00 4.20
2996 3037 6.302535 TCGTTTTATTCATTGGACTCCCTA 57.697 37.500 0.00 0.00 0.00 3.53
2997 3038 6.713276 TCGTTTTATTCATTGGACTCCCTAA 58.287 36.000 0.00 0.00 0.00 2.69
2998 3039 6.596497 TCGTTTTATTCATTGGACTCCCTAAC 59.404 38.462 0.00 0.00 0.00 2.34
2999 3040 6.183360 CGTTTTATTCATTGGACTCCCTAACC 60.183 42.308 0.00 0.00 0.00 2.85
3000 3041 6.652205 TTTATTCATTGGACTCCCTAACCT 57.348 37.500 0.00 0.00 0.00 3.50
3001 3042 7.758820 TTTATTCATTGGACTCCCTAACCTA 57.241 36.000 0.00 0.00 0.00 3.08
3002 3043 7.947782 TTATTCATTGGACTCCCTAACCTAT 57.052 36.000 0.00 0.00 0.00 2.57
3003 3044 6.848562 ATTCATTGGACTCCCTAACCTATT 57.151 37.500 0.00 0.00 0.00 1.73
3004 3045 6.652205 TTCATTGGACTCCCTAACCTATTT 57.348 37.500 0.00 0.00 0.00 1.40
3005 3046 7.758820 TTCATTGGACTCCCTAACCTATTTA 57.241 36.000 0.00 0.00 0.00 1.40
3006 3047 7.947782 TCATTGGACTCCCTAACCTATTTAT 57.052 36.000 0.00 0.00 0.00 1.40
3007 3048 8.344939 TCATTGGACTCCCTAACCTATTTATT 57.655 34.615 0.00 0.00 0.00 1.40
3008 3049 8.437575 TCATTGGACTCCCTAACCTATTTATTC 58.562 37.037 0.00 0.00 0.00 1.75
3009 3050 8.440771 CATTGGACTCCCTAACCTATTTATTCT 58.559 37.037 0.00 0.00 0.00 2.40
3010 3051 7.613551 TGGACTCCCTAACCTATTTATTCTC 57.386 40.000 0.00 0.00 0.00 2.87
3011 3052 6.267014 TGGACTCCCTAACCTATTTATTCTCG 59.733 42.308 0.00 0.00 0.00 4.04
3012 3053 6.492772 GGACTCCCTAACCTATTTATTCTCGA 59.507 42.308 0.00 0.00 0.00 4.04
3013 3054 7.287512 ACTCCCTAACCTATTTATTCTCGAC 57.712 40.000 0.00 0.00 0.00 4.20
3014 3055 6.267242 ACTCCCTAACCTATTTATTCTCGACC 59.733 42.308 0.00 0.00 0.00 4.79
3015 3056 5.242393 TCCCTAACCTATTTATTCTCGACCG 59.758 44.000 0.00 0.00 0.00 4.79
3016 3057 5.010415 CCCTAACCTATTTATTCTCGACCGT 59.990 44.000 0.00 0.00 0.00 4.83
3017 3058 6.148264 CCTAACCTATTTATTCTCGACCGTC 58.852 44.000 0.00 0.00 0.00 4.79
3018 3059 4.581077 ACCTATTTATTCTCGACCGTCC 57.419 45.455 0.00 0.00 0.00 4.79
3019 3060 3.004106 ACCTATTTATTCTCGACCGTCCG 59.996 47.826 0.00 0.00 0.00 4.79
3020 3061 3.251729 CCTATTTATTCTCGACCGTCCGA 59.748 47.826 0.00 0.00 37.03 4.55
3021 3062 4.082895 CCTATTTATTCTCGACCGTCCGAT 60.083 45.833 0.00 0.00 37.96 4.18
3022 3063 3.788333 TTTATTCTCGACCGTCCGATT 57.212 42.857 0.00 0.00 37.96 3.34
3023 3064 3.788333 TTATTCTCGACCGTCCGATTT 57.212 42.857 0.00 0.00 37.96 2.17
3024 3065 4.898829 TTATTCTCGACCGTCCGATTTA 57.101 40.909 0.00 0.00 37.96 1.40
3025 3066 3.788333 ATTCTCGACCGTCCGATTTAA 57.212 42.857 0.00 0.00 37.96 1.52
3026 3067 3.788333 TTCTCGACCGTCCGATTTAAT 57.212 42.857 0.00 0.00 37.96 1.40
3027 3068 3.344904 TCTCGACCGTCCGATTTAATC 57.655 47.619 0.00 0.00 37.96 1.75
3040 3081 4.895224 GATTTAATCGGAGGGTCCAAAC 57.105 45.455 0.00 0.00 35.91 2.93
3041 3082 4.524053 GATTTAATCGGAGGGTCCAAACT 58.476 43.478 0.00 0.00 35.91 2.66
3042 3083 4.376225 TTTAATCGGAGGGTCCAAACTT 57.624 40.909 0.00 0.00 35.91 2.66
3043 3084 5.502089 TTTAATCGGAGGGTCCAAACTTA 57.498 39.130 0.00 0.00 35.91 2.24
3044 3085 5.502089 TTAATCGGAGGGTCCAAACTTAA 57.498 39.130 0.00 0.00 35.91 1.85
3045 3086 2.845363 TCGGAGGGTCCAAACTTAAC 57.155 50.000 0.00 0.00 35.91 2.01
3046 3087 1.348696 TCGGAGGGTCCAAACTTAACC 59.651 52.381 0.00 0.00 35.91 2.85
3052 3093 3.520691 GGTCCAAACTTAACCCTCCTT 57.479 47.619 0.00 0.00 0.00 3.36
3053 3094 3.840991 GGTCCAAACTTAACCCTCCTTT 58.159 45.455 0.00 0.00 0.00 3.11
3054 3095 4.220724 GGTCCAAACTTAACCCTCCTTTT 58.779 43.478 0.00 0.00 0.00 2.27
3055 3096 4.280174 GGTCCAAACTTAACCCTCCTTTTC 59.720 45.833 0.00 0.00 0.00 2.29
3056 3097 5.138276 GTCCAAACTTAACCCTCCTTTTCT 58.862 41.667 0.00 0.00 0.00 2.52
3057 3098 6.301486 GTCCAAACTTAACCCTCCTTTTCTA 58.699 40.000 0.00 0.00 0.00 2.10
3058 3099 6.946583 GTCCAAACTTAACCCTCCTTTTCTAT 59.053 38.462 0.00 0.00 0.00 1.98
3059 3100 8.105197 GTCCAAACTTAACCCTCCTTTTCTATA 58.895 37.037 0.00 0.00 0.00 1.31
3060 3101 8.842764 TCCAAACTTAACCCTCCTTTTCTATAT 58.157 33.333 0.00 0.00 0.00 0.86
3092 3133 8.922229 ATAGACCTACTTTCCTAACCCTAAAA 57.078 34.615 0.00 0.00 0.00 1.52
3093 3134 7.013823 AGACCTACTTTCCTAACCCTAAAAC 57.986 40.000 0.00 0.00 0.00 2.43
3094 3135 6.013032 AGACCTACTTTCCTAACCCTAAAACC 60.013 42.308 0.00 0.00 0.00 3.27
3095 3136 5.853922 ACCTACTTTCCTAACCCTAAAACCT 59.146 40.000 0.00 0.00 0.00 3.50
3096 3137 7.024994 ACCTACTTTCCTAACCCTAAAACCTA 58.975 38.462 0.00 0.00 0.00 3.08
3097 3138 7.181665 ACCTACTTTCCTAACCCTAAAACCTAG 59.818 40.741 0.00 0.00 0.00 3.02
3098 3139 6.384342 ACTTTCCTAACCCTAAAACCTAGG 57.616 41.667 7.41 7.41 34.52 3.02
3099 3140 4.849813 TTCCTAACCCTAAAACCTAGGC 57.150 45.455 9.30 0.00 33.41 3.93
3100 3141 4.084466 TCCTAACCCTAAAACCTAGGCT 57.916 45.455 9.30 0.00 33.41 4.58
3101 3142 4.441757 TCCTAACCCTAAAACCTAGGCTT 58.558 43.478 9.30 0.00 33.41 4.35
3102 3143 4.472470 TCCTAACCCTAAAACCTAGGCTTC 59.528 45.833 9.30 0.00 33.41 3.86
3103 3144 4.473922 CCTAACCCTAAAACCTAGGCTTCT 59.526 45.833 9.30 0.00 33.41 2.85
3104 3145 5.045066 CCTAACCCTAAAACCTAGGCTTCTT 60.045 44.000 9.30 0.00 33.41 2.52
3105 3146 4.302559 ACCCTAAAACCTAGGCTTCTTG 57.697 45.455 9.30 0.00 33.41 3.02
3106 3147 3.017442 CCCTAAAACCTAGGCTTCTTGC 58.983 50.000 9.30 0.00 41.94 4.01
3115 3156 3.880846 GCTTCTTGCCCCATCGCG 61.881 66.667 0.00 0.00 35.15 5.87
3116 3157 3.880846 CTTCTTGCCCCATCGCGC 61.881 66.667 0.00 0.00 0.00 6.86
3133 3174 4.506255 CCCCCACCCGCTCAATCC 62.506 72.222 0.00 0.00 0.00 3.01
3134 3175 3.411517 CCCCACCCGCTCAATCCT 61.412 66.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 8.564574 TGAAGAACAATTTAACAACGCTAGATT 58.435 29.630 0.00 0.00 0.00 2.40
328 334 2.239654 TGGGAAAGAGCTAGGTTCCATG 59.760 50.000 19.11 0.00 42.26 3.66
337 343 4.406003 GGAATACTCTGTGGGAAAGAGCTA 59.594 45.833 0.42 0.00 44.22 3.32
964 976 6.210385 ACATCTAGATACTCGAATCCTGCAAT 59.790 38.462 4.54 0.00 0.00 3.56
975 987 5.811100 TCCGTATAGCACATCTAGATACTCG 59.189 44.000 4.54 4.10 0.00 4.18
1001 1013 6.999950 TCATAGATAGTTATTTTAGCCCGCA 58.000 36.000 0.00 0.00 0.00 5.69
1016 1028 9.703892 CATTCTTCACCTTAGGTTCATAGATAG 57.296 37.037 0.00 0.00 31.02 2.08
1042 1054 7.763528 CCATGATGCACTTAGATCCTTACTATC 59.236 40.741 0.00 0.00 0.00 2.08
1085 1097 5.064452 CCATCTGCAAGTCATACTCTTTGTC 59.936 44.000 0.00 0.00 33.76 3.18
1096 1108 2.171237 CACCTATCCCATCTGCAAGTCA 59.829 50.000 0.00 0.00 33.76 3.41
1098 1110 2.200081 ACACCTATCCCATCTGCAAGT 58.800 47.619 0.00 0.00 33.76 3.16
1415 1432 9.527157 TTAACATGAGAATACCTTGAAAATGGA 57.473 29.630 0.00 0.00 0.00 3.41
1517 1535 6.972901 GCCACCTATAAGTTTGATTTAAGCAC 59.027 38.462 0.00 0.00 0.00 4.40
1526 1544 4.083565 GGTTTGGCCACCTATAAGTTTGA 58.916 43.478 3.88 0.00 37.17 2.69
1606 1629 8.134202 TGAAAGAGATATTTGGTACTCTCACA 57.866 34.615 9.46 0.00 38.53 3.58
1682 1706 5.164233 ACTAGTCGATCAGATGTTTGTGTG 58.836 41.667 3.50 0.00 0.00 3.82
1693 1717 8.864069 ACTTGAAATGAATACTAGTCGATCAG 57.136 34.615 0.00 0.00 0.00 2.90
1767 1791 5.454520 CGTAAGACACCCACCAATTTTTAC 58.545 41.667 0.00 0.00 43.02 2.01
1797 1821 8.121305 TGGCCAATATCCAATATGTATGTTTC 57.879 34.615 0.61 0.00 0.00 2.78
1860 1884 2.158475 ACATACCCACCCCATAATGCAG 60.158 50.000 0.00 0.00 0.00 4.41
1914 1938 2.427095 GCAAAATGACCACTACCCATCC 59.573 50.000 0.00 0.00 0.00 3.51
2101 2125 2.838202 ACCAGGTCCACCATAGTAAGTG 59.162 50.000 0.00 0.00 38.89 3.16
2275 2316 2.920524 TGTCGAAAAGGGCTACAACAA 58.079 42.857 0.00 0.00 0.00 2.83
2316 2357 1.834263 ACCAATTCCTTCTCCTCCTCG 59.166 52.381 0.00 0.00 0.00 4.63
2391 2432 7.515957 AAGGTACGTTCTTGTGATATAAACG 57.484 36.000 0.00 4.58 45.90 3.60
2409 2450 8.911662 CACAATTGCACTTTTGTTATAAGGTAC 58.088 33.333 5.05 0.00 33.93 3.34
2519 2560 2.771089 AGCAGCTTCGTGAAAATCTCA 58.229 42.857 0.00 0.00 0.00 3.27
2655 2696 0.736325 CATCGGTCTCGGGTTGTCAC 60.736 60.000 0.00 0.00 36.95 3.67
2656 2697 1.589630 CATCGGTCTCGGGTTGTCA 59.410 57.895 0.00 0.00 36.95 3.58
2657 2698 1.810030 GCATCGGTCTCGGGTTGTC 60.810 63.158 0.00 0.00 36.95 3.18
2658 2699 2.227089 GAGCATCGGTCTCGGGTTGT 62.227 60.000 0.00 0.00 36.95 3.32
2659 2700 1.519455 GAGCATCGGTCTCGGGTTG 60.519 63.158 0.00 0.00 36.95 3.77
2660 2701 2.722201 GGAGCATCGGTCTCGGGTT 61.722 63.158 0.00 0.00 34.37 4.11
2661 2702 3.148279 GGAGCATCGGTCTCGGGT 61.148 66.667 0.00 0.00 34.37 5.28
2662 2703 3.144120 CTGGAGCATCGGTCTCGGG 62.144 68.421 0.00 0.00 34.37 5.14
2663 2704 2.121538 TCTGGAGCATCGGTCTCGG 61.122 63.158 0.00 0.00 34.37 4.63
2664 2705 1.064946 GTCTGGAGCATCGGTCTCG 59.935 63.158 0.00 0.00 34.37 4.04
2665 2706 1.323271 TGGTCTGGAGCATCGGTCTC 61.323 60.000 0.00 0.00 34.37 3.36
2666 2707 1.305297 TGGTCTGGAGCATCGGTCT 60.305 57.895 0.00 0.00 34.37 3.85
2667 2708 1.153549 GTGGTCTGGAGCATCGGTC 60.154 63.158 5.78 0.00 41.20 4.79
2668 2709 1.194781 AAGTGGTCTGGAGCATCGGT 61.195 55.000 5.78 0.00 41.20 4.69
2669 2710 0.036010 AAAGTGGTCTGGAGCATCGG 60.036 55.000 5.78 0.00 41.20 4.18
2670 2711 1.338105 TGAAAGTGGTCTGGAGCATCG 60.338 52.381 5.78 0.00 41.20 3.84
2671 2712 2.479566 TGAAAGTGGTCTGGAGCATC 57.520 50.000 5.78 1.17 41.20 3.91
2672 2713 2.040813 ACATGAAAGTGGTCTGGAGCAT 59.959 45.455 0.00 0.00 41.20 3.79
2673 2714 1.421268 ACATGAAAGTGGTCTGGAGCA 59.579 47.619 0.00 0.00 36.34 4.26
2674 2715 2.191128 ACATGAAAGTGGTCTGGAGC 57.809 50.000 0.00 0.00 0.00 4.70
2675 2716 4.392940 AGAAACATGAAAGTGGTCTGGAG 58.607 43.478 0.00 0.00 0.00 3.86
2676 2717 4.389374 GAGAAACATGAAAGTGGTCTGGA 58.611 43.478 0.00 0.00 0.00 3.86
2677 2718 3.187227 CGAGAAACATGAAAGTGGTCTGG 59.813 47.826 0.00 0.00 0.00 3.86
2678 2719 3.809832 ACGAGAAACATGAAAGTGGTCTG 59.190 43.478 0.00 0.00 0.00 3.51
2679 2720 4.073293 ACGAGAAACATGAAAGTGGTCT 57.927 40.909 0.00 0.00 0.00 3.85
2680 2721 4.035208 ACAACGAGAAACATGAAAGTGGTC 59.965 41.667 0.00 0.00 0.00 4.02
2681 2722 3.945285 ACAACGAGAAACATGAAAGTGGT 59.055 39.130 0.00 0.00 0.00 4.16
2682 2723 4.035091 TGACAACGAGAAACATGAAAGTGG 59.965 41.667 0.00 0.00 0.00 4.00
2683 2724 5.155509 TGACAACGAGAAACATGAAAGTG 57.844 39.130 0.00 0.00 0.00 3.16
2684 2725 4.260784 GCTGACAACGAGAAACATGAAAGT 60.261 41.667 0.00 0.00 0.00 2.66
2685 2726 4.214437 GCTGACAACGAGAAACATGAAAG 58.786 43.478 0.00 0.00 0.00 2.62
2686 2727 3.303066 CGCTGACAACGAGAAACATGAAA 60.303 43.478 0.00 0.00 0.00 2.69
2687 2728 2.220824 CGCTGACAACGAGAAACATGAA 59.779 45.455 0.00 0.00 0.00 2.57
2688 2729 1.792367 CGCTGACAACGAGAAACATGA 59.208 47.619 0.00 0.00 0.00 3.07
2689 2730 1.526887 ACGCTGACAACGAGAAACATG 59.473 47.619 5.06 0.00 0.00 3.21
2690 2731 1.526887 CACGCTGACAACGAGAAACAT 59.473 47.619 5.06 0.00 0.00 2.71
2691 2732 0.927537 CACGCTGACAACGAGAAACA 59.072 50.000 5.06 0.00 0.00 2.83
2692 2733 0.928229 ACACGCTGACAACGAGAAAC 59.072 50.000 5.06 0.00 0.00 2.78
2693 2734 1.202371 AGACACGCTGACAACGAGAAA 60.202 47.619 5.06 0.00 0.00 2.52
2694 2735 0.384309 AGACACGCTGACAACGAGAA 59.616 50.000 5.06 0.00 0.00 2.87
2695 2736 0.384309 AAGACACGCTGACAACGAGA 59.616 50.000 5.06 0.00 0.00 4.04
2696 2737 0.778815 GAAGACACGCTGACAACGAG 59.221 55.000 5.06 0.00 0.00 4.18
2697 2738 0.384309 AGAAGACACGCTGACAACGA 59.616 50.000 5.06 0.00 0.00 3.85
2698 2739 1.209128 AAGAAGACACGCTGACAACG 58.791 50.000 0.00 0.00 0.00 4.10
2699 2740 3.675467 AAAAGAAGACACGCTGACAAC 57.325 42.857 0.00 0.00 0.00 3.32
2700 2741 6.183360 ACAAATAAAAGAAGACACGCTGACAA 60.183 34.615 0.00 0.00 0.00 3.18
2701 2742 5.295787 ACAAATAAAAGAAGACACGCTGACA 59.704 36.000 0.00 0.00 0.00 3.58
2702 2743 5.748592 ACAAATAAAAGAAGACACGCTGAC 58.251 37.500 0.00 0.00 0.00 3.51
2703 2744 6.371809 AACAAATAAAAGAAGACACGCTGA 57.628 33.333 0.00 0.00 0.00 4.26
2704 2745 6.472163 ACAAACAAATAAAAGAAGACACGCTG 59.528 34.615 0.00 0.00 0.00 5.18
2705 2746 6.560711 ACAAACAAATAAAAGAAGACACGCT 58.439 32.000 0.00 0.00 0.00 5.07
2706 2747 6.806120 ACAAACAAATAAAAGAAGACACGC 57.194 33.333 0.00 0.00 0.00 5.34
2707 2748 7.009174 AGCAACAAACAAATAAAAGAAGACACG 59.991 33.333 0.00 0.00 0.00 4.49
2708 2749 8.185003 AGCAACAAACAAATAAAAGAAGACAC 57.815 30.769 0.00 0.00 0.00 3.67
2709 2750 8.770438 AAGCAACAAACAAATAAAAGAAGACA 57.230 26.923 0.00 0.00 0.00 3.41
2715 2756 9.985318 TGATGAAAAGCAACAAACAAATAAAAG 57.015 25.926 0.00 0.00 0.00 2.27
2718 2759 8.486383 CGATGATGAAAAGCAACAAACAAATAA 58.514 29.630 0.00 0.00 32.72 1.40
2719 2760 7.359097 GCGATGATGAAAAGCAACAAACAAATA 60.359 33.333 0.00 0.00 32.72 1.40
2720 2761 6.564499 GCGATGATGAAAAGCAACAAACAAAT 60.564 34.615 0.00 0.00 32.72 2.32
2721 2762 5.276773 GCGATGATGAAAAGCAACAAACAAA 60.277 36.000 0.00 0.00 32.72 2.83
2722 2763 4.208873 GCGATGATGAAAAGCAACAAACAA 59.791 37.500 0.00 0.00 32.72 2.83
2723 2764 3.735240 GCGATGATGAAAAGCAACAAACA 59.265 39.130 0.00 0.00 32.72 2.83
2724 2765 3.735240 TGCGATGATGAAAAGCAACAAAC 59.265 39.130 0.00 0.00 32.72 2.93
2725 2766 3.974912 TGCGATGATGAAAAGCAACAAA 58.025 36.364 0.00 0.00 32.72 2.83
2726 2767 3.639716 TGCGATGATGAAAAGCAACAA 57.360 38.095 0.00 0.00 32.72 2.83
2727 2768 3.190953 TGATGCGATGATGAAAAGCAACA 59.809 39.130 0.00 0.00 41.37 3.33
2728 2769 3.761657 TGATGCGATGATGAAAAGCAAC 58.238 40.909 0.00 0.00 41.37 4.17
2729 2770 4.642445 ATGATGCGATGATGAAAAGCAA 57.358 36.364 0.00 0.00 41.37 3.91
2730 2771 4.603985 GAATGATGCGATGATGAAAAGCA 58.396 39.130 0.00 0.00 42.28 3.91
2731 2772 3.662645 CGAATGATGCGATGATGAAAAGC 59.337 43.478 0.00 0.00 0.00 3.51
2732 2773 3.662645 GCGAATGATGCGATGATGAAAAG 59.337 43.478 0.00 0.00 0.00 2.27
2733 2774 3.313249 AGCGAATGATGCGATGATGAAAA 59.687 39.130 0.00 0.00 37.44 2.29
2734 2775 2.874086 AGCGAATGATGCGATGATGAAA 59.126 40.909 0.00 0.00 37.44 2.69
2735 2776 2.486918 AGCGAATGATGCGATGATGAA 58.513 42.857 0.00 0.00 37.44 2.57
2736 2777 2.159327 AGCGAATGATGCGATGATGA 57.841 45.000 0.00 0.00 37.44 2.92
2737 2778 2.963498 AAGCGAATGATGCGATGATG 57.037 45.000 0.00 0.00 37.44 3.07
2738 2779 2.603892 GCAAAGCGAATGATGCGATGAT 60.604 45.455 0.00 0.00 37.44 2.45
2739 2780 1.268184 GCAAAGCGAATGATGCGATGA 60.268 47.619 0.00 0.00 37.44 2.92
2740 2781 1.118033 GCAAAGCGAATGATGCGATG 58.882 50.000 0.00 0.00 37.44 3.84
2741 2782 0.734309 TGCAAAGCGAATGATGCGAT 59.266 45.000 0.00 0.00 41.61 4.58
2742 2783 0.734309 ATGCAAAGCGAATGATGCGA 59.266 45.000 0.00 0.00 41.61 5.10
2743 2784 1.118033 GATGCAAAGCGAATGATGCG 58.882 50.000 0.00 0.00 41.61 4.73
2744 2785 1.118033 CGATGCAAAGCGAATGATGC 58.882 50.000 0.00 0.00 39.22 3.91
2745 2786 1.750351 CCGATGCAAAGCGAATGATG 58.250 50.000 8.32 0.00 0.00 3.07
2746 2787 0.029834 GCCGATGCAAAGCGAATGAT 59.970 50.000 8.32 0.00 37.47 2.45
2747 2788 1.304509 TGCCGATGCAAAGCGAATGA 61.305 50.000 8.32 0.00 46.66 2.57
2748 2789 1.137194 TGCCGATGCAAAGCGAATG 59.863 52.632 8.32 0.00 46.66 2.67
2749 2790 3.589579 TGCCGATGCAAAGCGAAT 58.410 50.000 8.32 0.00 46.66 3.34
2758 2799 2.778679 GACAACGAGTGCCGATGC 59.221 61.111 0.00 0.00 43.66 3.91
2759 2800 1.674611 GACGACAACGAGTGCCGATG 61.675 60.000 6.58 0.00 45.08 3.84
2760 2801 1.443872 GACGACAACGAGTGCCGAT 60.444 57.895 6.58 0.00 42.66 4.18
2761 2802 2.050714 GACGACAACGAGTGCCGA 60.051 61.111 6.58 0.00 42.66 5.54
2762 2803 1.282248 AATGACGACAACGAGTGCCG 61.282 55.000 0.00 0.00 42.66 5.69
2763 2804 0.163788 CAATGACGACAACGAGTGCC 59.836 55.000 0.00 0.00 42.66 5.01
2764 2805 0.859232 ACAATGACGACAACGAGTGC 59.141 50.000 0.00 0.00 42.66 4.40
2765 2806 3.585748 AAACAATGACGACAACGAGTG 57.414 42.857 0.00 0.00 42.66 3.51
2766 2807 5.721876 TTAAAACAATGACGACAACGAGT 57.278 34.783 0.00 0.00 42.66 4.18
2767 2808 6.685403 AGTTTTAAAACAATGACGACAACGAG 59.315 34.615 28.03 0.00 41.30 4.18
2768 2809 6.544622 AGTTTTAAAACAATGACGACAACGA 58.455 32.000 28.03 0.00 41.30 3.85
2769 2810 6.784068 AGTTTTAAAACAATGACGACAACG 57.216 33.333 28.03 0.00 41.30 4.10
2770 2811 6.892430 GCAAGTTTTAAAACAATGACGACAAC 59.108 34.615 28.03 11.22 41.30 3.32
2771 2812 6.586463 TGCAAGTTTTAAAACAATGACGACAA 59.414 30.769 28.03 9.69 41.30 3.18
2772 2813 6.093404 TGCAAGTTTTAAAACAATGACGACA 58.907 32.000 28.03 17.07 41.30 4.35
2773 2814 6.561945 TGCAAGTTTTAAAACAATGACGAC 57.438 33.333 28.03 15.29 41.30 4.34
2774 2815 7.199766 AGATGCAAGTTTTAAAACAATGACGA 58.800 30.769 28.03 15.48 41.30 4.20
2775 2816 7.393551 AGATGCAAGTTTTAAAACAATGACG 57.606 32.000 28.03 13.04 41.30 4.35
2776 2817 9.463443 AGTAGATGCAAGTTTTAAAACAATGAC 57.537 29.630 28.03 20.61 41.30 3.06
2777 2818 9.677567 GAGTAGATGCAAGTTTTAAAACAATGA 57.322 29.630 28.03 17.03 41.30 2.57
2778 2819 8.629986 CGAGTAGATGCAAGTTTTAAAACAATG 58.370 33.333 28.03 24.98 41.30 2.82
2779 2820 8.349983 ACGAGTAGATGCAAGTTTTAAAACAAT 58.650 29.630 28.03 16.22 41.30 2.71
2780 2821 7.699566 ACGAGTAGATGCAAGTTTTAAAACAA 58.300 30.769 28.03 13.86 41.30 2.83
2781 2822 7.254227 ACGAGTAGATGCAAGTTTTAAAACA 57.746 32.000 28.03 11.71 41.30 2.83
2782 2823 8.493547 ACTACGAGTAGATGCAAGTTTTAAAAC 58.506 33.333 21.06 21.06 36.80 2.43
2783 2824 8.597662 ACTACGAGTAGATGCAAGTTTTAAAA 57.402 30.769 16.27 0.00 36.97 1.52
2784 2825 8.492748 CAACTACGAGTAGATGCAAGTTTTAAA 58.507 33.333 16.27 0.00 36.97 1.52
2785 2826 8.014322 CAACTACGAGTAGATGCAAGTTTTAA 57.986 34.615 16.27 0.00 36.97 1.52
2786 2827 7.576750 CAACTACGAGTAGATGCAAGTTTTA 57.423 36.000 16.27 0.00 36.97 1.52
2787 2828 6.467723 CAACTACGAGTAGATGCAAGTTTT 57.532 37.500 16.27 0.00 36.97 2.43
2795 2836 1.065701 AGCGGCAACTACGAGTAGATG 59.934 52.381 16.27 14.96 38.50 2.90
2796 2837 1.390565 AGCGGCAACTACGAGTAGAT 58.609 50.000 16.27 2.34 36.97 1.98
2797 2838 1.131883 GAAGCGGCAACTACGAGTAGA 59.868 52.381 16.27 0.00 36.97 2.59
2798 2839 1.132643 AGAAGCGGCAACTACGAGTAG 59.867 52.381 1.45 8.58 39.04 2.57
2799 2840 1.131883 GAGAAGCGGCAACTACGAGTA 59.868 52.381 1.45 0.00 0.00 2.59
2800 2841 0.109226 GAGAAGCGGCAACTACGAGT 60.109 55.000 1.45 0.00 0.00 4.18
2801 2842 1.134530 CGAGAAGCGGCAACTACGAG 61.135 60.000 1.45 0.00 36.03 4.18
2802 2843 1.154093 CGAGAAGCGGCAACTACGA 60.154 57.895 1.45 0.00 36.03 3.43
2803 2844 2.789203 GCGAGAAGCGGCAACTACG 61.789 63.158 1.45 7.99 41.29 3.51
2804 2845 3.081993 GCGAGAAGCGGCAACTAC 58.918 61.111 1.45 0.00 41.29 2.73
2814 2855 1.457303 CAACGGAGACAAAGCGAGAAG 59.543 52.381 0.00 0.00 0.00 2.85
2815 2856 1.067974 TCAACGGAGACAAAGCGAGAA 59.932 47.619 0.00 0.00 0.00 2.87
2816 2857 0.671796 TCAACGGAGACAAAGCGAGA 59.328 50.000 0.00 0.00 0.00 4.04
2817 2858 0.784778 GTCAACGGAGACAAAGCGAG 59.215 55.000 4.84 0.00 38.40 5.03
2818 2859 0.599204 GGTCAACGGAGACAAAGCGA 60.599 55.000 10.94 0.00 40.29 4.93
2819 2860 0.600255 AGGTCAACGGAGACAAAGCG 60.600 55.000 10.94 0.00 40.29 4.68
2820 2861 1.594331 AAGGTCAACGGAGACAAAGC 58.406 50.000 10.94 0.00 40.29 3.51
2821 2862 3.377172 ACAAAAGGTCAACGGAGACAAAG 59.623 43.478 10.94 0.48 40.29 2.77
2822 2863 3.349022 ACAAAAGGTCAACGGAGACAAA 58.651 40.909 10.94 0.00 40.29 2.83
2823 2864 2.940410 GACAAAAGGTCAACGGAGACAA 59.060 45.455 10.94 0.00 46.19 3.18
2824 2865 2.557317 GACAAAAGGTCAACGGAGACA 58.443 47.619 10.94 0.00 46.19 3.41
2835 2876 1.133482 CAAGGGGTCCTGACAAAAGGT 60.133 52.381 0.00 0.00 38.58 3.50
2836 2877 1.133482 ACAAGGGGTCCTGACAAAAGG 60.133 52.381 0.00 0.00 38.84 3.11
2837 2878 2.230660 GACAAGGGGTCCTGACAAAAG 58.769 52.381 0.00 0.00 40.83 2.27
2838 2879 2.358322 GACAAGGGGTCCTGACAAAA 57.642 50.000 0.00 0.00 40.83 2.44
2848 2889 0.108019 GGTCGACAAAGACAAGGGGT 59.892 55.000 18.91 0.00 42.62 4.95
2849 2890 0.396811 AGGTCGACAAAGACAAGGGG 59.603 55.000 18.91 0.00 42.62 4.79
2850 2891 1.344763 AGAGGTCGACAAAGACAAGGG 59.655 52.381 18.91 0.00 42.62 3.95
2851 2892 2.297597 AGAGAGGTCGACAAAGACAAGG 59.702 50.000 18.91 0.00 42.62 3.61
2852 2893 3.004839 TGAGAGAGGTCGACAAAGACAAG 59.995 47.826 18.91 0.00 42.62 3.16
2853 2894 2.956333 TGAGAGAGGTCGACAAAGACAA 59.044 45.455 18.91 0.00 42.62 3.18
2854 2895 2.583143 TGAGAGAGGTCGACAAAGACA 58.417 47.619 18.91 7.14 42.62 3.41
2855 2896 3.644884 TTGAGAGAGGTCGACAAAGAC 57.355 47.619 18.91 4.50 40.25 3.01
2856 2897 3.243771 GGTTTGAGAGAGGTCGACAAAGA 60.244 47.826 18.91 0.00 35.85 2.52
2857 2898 3.060602 GGTTTGAGAGAGGTCGACAAAG 58.939 50.000 18.91 0.00 35.85 2.77
2858 2899 2.224209 GGGTTTGAGAGAGGTCGACAAA 60.224 50.000 18.91 4.43 34.19 2.83
2859 2900 1.343465 GGGTTTGAGAGAGGTCGACAA 59.657 52.381 18.91 0.00 0.00 3.18
2860 2901 0.966920 GGGTTTGAGAGAGGTCGACA 59.033 55.000 18.91 0.00 0.00 4.35
2861 2902 0.246910 GGGGTTTGAGAGAGGTCGAC 59.753 60.000 7.13 7.13 0.00 4.20
2862 2903 0.903454 GGGGGTTTGAGAGAGGTCGA 60.903 60.000 0.00 0.00 0.00 4.20
2863 2904 1.597461 GGGGGTTTGAGAGAGGTCG 59.403 63.158 0.00 0.00 0.00 4.79
2882 2923 4.717629 TTCAGACGGGCACGCGAG 62.718 66.667 15.93 5.97 46.04 5.03
2883 2924 4.287781 TTTCAGACGGGCACGCGA 62.288 61.111 15.93 0.00 46.04 5.87
2884 2925 3.777925 CTTTCAGACGGGCACGCG 61.778 66.667 9.12 3.53 46.04 6.01
2885 2926 2.251642 AACTTTCAGACGGGCACGC 61.252 57.895 9.12 0.14 46.04 5.34
2887 2928 0.586802 GACAACTTTCAGACGGGCAC 59.413 55.000 0.00 0.00 0.00 5.01
2888 2929 0.534203 GGACAACTTTCAGACGGGCA 60.534 55.000 0.00 0.00 0.00 5.36
2889 2930 1.235281 GGGACAACTTTCAGACGGGC 61.235 60.000 0.00 0.00 0.00 6.13
2890 2931 0.949105 CGGGACAACTTTCAGACGGG 60.949 60.000 0.00 0.00 0.00 5.28
2891 2932 0.032952 TCGGGACAACTTTCAGACGG 59.967 55.000 0.00 0.00 0.00 4.79
2892 2933 1.525619 GTTCGGGACAACTTTCAGACG 59.474 52.381 0.00 0.00 0.00 4.18
2893 2934 1.871676 GGTTCGGGACAACTTTCAGAC 59.128 52.381 0.00 0.00 0.00 3.51
2894 2935 1.202722 GGGTTCGGGACAACTTTCAGA 60.203 52.381 0.00 0.00 0.00 3.27
2895 2936 1.235724 GGGTTCGGGACAACTTTCAG 58.764 55.000 0.00 0.00 0.00 3.02
2896 2937 0.533308 CGGGTTCGGGACAACTTTCA 60.533 55.000 0.00 0.00 0.00 2.69
2897 2938 0.249996 TCGGGTTCGGGACAACTTTC 60.250 55.000 0.00 0.00 36.95 2.62
2898 2939 0.533531 GTCGGGTTCGGGACAACTTT 60.534 55.000 0.00 0.00 36.95 2.66
2899 2940 1.070275 GTCGGGTTCGGGACAACTT 59.930 57.895 0.00 0.00 36.95 2.66
2900 2941 2.739132 GTCGGGTTCGGGACAACT 59.261 61.111 0.00 0.00 36.95 3.16
2901 2942 2.357881 GGTCGGGTTCGGGACAAC 60.358 66.667 0.00 0.00 34.87 3.32
2902 2943 3.628982 GGGTCGGGTTCGGGACAA 61.629 66.667 0.00 0.00 34.87 3.18
2915 2956 4.736896 GTCACGACTGCCCGGGTC 62.737 72.222 24.63 15.35 34.05 4.46
2933 2974 1.293498 GGATGATCCGGACCCATCG 59.707 63.158 28.22 0.00 37.99 3.84
2934 2975 1.679898 GGGATGATCCGGACCCATC 59.320 63.158 27.87 27.87 41.72 3.51
2935 2976 1.847968 GGGGATGATCCGGACCCAT 60.848 63.158 25.06 21.61 43.67 4.00
2936 2977 2.447765 GGGGATGATCCGGACCCA 60.448 66.667 25.06 18.22 43.67 4.51
2937 2978 1.641552 TTTGGGGATGATCCGGACCC 61.642 60.000 17.77 17.77 37.43 4.46
2938 2979 0.465642 GTTTGGGGATGATCCGGACC 60.466 60.000 6.12 2.47 37.43 4.46
2939 2980 0.254747 TGTTTGGGGATGATCCGGAC 59.745 55.000 6.12 0.90 37.43 4.79
2940 2981 1.142870 GATGTTTGGGGATGATCCGGA 59.857 52.381 6.61 6.61 37.43 5.14
2941 2982 1.609208 GATGTTTGGGGATGATCCGG 58.391 55.000 5.22 0.00 37.43 5.14
2942 2983 1.143684 AGGATGTTTGGGGATGATCCG 59.856 52.381 5.22 0.00 37.43 4.18
2943 2984 3.319031 AAGGATGTTTGGGGATGATCC 57.681 47.619 1.94 1.94 35.23 3.36
2944 2985 6.790232 TTTTAAGGATGTTTGGGGATGATC 57.210 37.500 0.00 0.00 0.00 2.92
2945 2986 8.873144 CATATTTTAAGGATGTTTGGGGATGAT 58.127 33.333 0.00 0.00 0.00 2.45
2946 2987 7.843760 ACATATTTTAAGGATGTTTGGGGATGA 59.156 33.333 0.00 0.00 29.46 2.92
2947 2988 8.021898 ACATATTTTAAGGATGTTTGGGGATG 57.978 34.615 0.00 0.00 29.46 3.51
2948 2989 8.622572 AACATATTTTAAGGATGTTTGGGGAT 57.377 30.769 6.09 0.00 40.09 3.85
2949 2990 7.147983 CGAACATATTTTAAGGATGTTTGGGGA 60.148 37.037 13.58 0.00 42.40 4.81
2950 2991 6.978080 CGAACATATTTTAAGGATGTTTGGGG 59.022 38.462 13.58 4.15 42.40 4.96
2951 2992 7.543756 ACGAACATATTTTAAGGATGTTTGGG 58.456 34.615 19.96 12.60 44.25 4.12
2952 2993 8.980143 AACGAACATATTTTAAGGATGTTTGG 57.020 30.769 19.96 14.06 44.25 3.28
2967 3008 8.621286 GGAGTCCAATGAATAAAACGAACATAT 58.379 33.333 3.60 0.00 0.00 1.78
2968 3009 7.066525 GGGAGTCCAATGAATAAAACGAACATA 59.933 37.037 12.30 0.00 0.00 2.29
2969 3010 6.127730 GGGAGTCCAATGAATAAAACGAACAT 60.128 38.462 12.30 0.00 0.00 2.71
2970 3011 5.182380 GGGAGTCCAATGAATAAAACGAACA 59.818 40.000 12.30 0.00 0.00 3.18
2971 3012 5.414765 AGGGAGTCCAATGAATAAAACGAAC 59.585 40.000 12.30 0.00 34.83 3.95
2972 3013 5.566469 AGGGAGTCCAATGAATAAAACGAA 58.434 37.500 12.30 0.00 34.83 3.85
2973 3014 5.174037 AGGGAGTCCAATGAATAAAACGA 57.826 39.130 12.30 0.00 34.83 3.85
2974 3015 6.183360 GGTTAGGGAGTCCAATGAATAAAACG 60.183 42.308 12.30 0.00 34.83 3.60
2975 3016 6.890268 AGGTTAGGGAGTCCAATGAATAAAAC 59.110 38.462 12.30 0.00 34.83 2.43
2976 3017 7.039722 AGGTTAGGGAGTCCAATGAATAAAA 57.960 36.000 12.30 0.00 34.83 1.52
2977 3018 6.652205 AGGTTAGGGAGTCCAATGAATAAA 57.348 37.500 12.30 0.00 34.83 1.40
2978 3019 7.947782 ATAGGTTAGGGAGTCCAATGAATAA 57.052 36.000 12.30 0.00 34.83 1.40
2979 3020 7.947782 AATAGGTTAGGGAGTCCAATGAATA 57.052 36.000 12.30 0.00 34.83 1.75
2980 3021 6.848562 AATAGGTTAGGGAGTCCAATGAAT 57.151 37.500 12.30 0.00 34.83 2.57
2981 3022 6.652205 AAATAGGTTAGGGAGTCCAATGAA 57.348 37.500 12.30 0.00 34.83 2.57
2982 3023 7.947782 ATAAATAGGTTAGGGAGTCCAATGA 57.052 36.000 12.30 0.00 34.83 2.57
2983 3024 8.440771 AGAATAAATAGGTTAGGGAGTCCAATG 58.559 37.037 12.30 0.00 34.83 2.82
2984 3025 8.582891 AGAATAAATAGGTTAGGGAGTCCAAT 57.417 34.615 12.30 0.96 34.83 3.16
2985 3026 7.201974 CGAGAATAAATAGGTTAGGGAGTCCAA 60.202 40.741 12.30 0.00 34.83 3.53
2986 3027 6.267014 CGAGAATAAATAGGTTAGGGAGTCCA 59.733 42.308 12.30 0.00 34.83 4.02
2987 3028 6.492772 TCGAGAATAAATAGGTTAGGGAGTCC 59.507 42.308 0.00 0.00 0.00 3.85
2988 3029 7.369607 GTCGAGAATAAATAGGTTAGGGAGTC 58.630 42.308 0.00 0.00 0.00 3.36
2989 3030 6.267242 GGTCGAGAATAAATAGGTTAGGGAGT 59.733 42.308 0.00 0.00 0.00 3.85
2990 3031 6.569994 CGGTCGAGAATAAATAGGTTAGGGAG 60.570 46.154 0.00 0.00 0.00 4.30
2991 3032 5.242393 CGGTCGAGAATAAATAGGTTAGGGA 59.758 44.000 0.00 0.00 0.00 4.20
2992 3033 5.010415 ACGGTCGAGAATAAATAGGTTAGGG 59.990 44.000 0.00 0.00 0.00 3.53
2993 3034 6.081872 ACGGTCGAGAATAAATAGGTTAGG 57.918 41.667 0.00 0.00 0.00 2.69
2994 3035 6.148264 GGACGGTCGAGAATAAATAGGTTAG 58.852 44.000 1.43 0.00 0.00 2.34
2995 3036 5.277974 CGGACGGTCGAGAATAAATAGGTTA 60.278 44.000 1.43 0.00 0.00 2.85
2996 3037 4.498682 CGGACGGTCGAGAATAAATAGGTT 60.499 45.833 1.43 0.00 0.00 3.50
2997 3038 3.004106 CGGACGGTCGAGAATAAATAGGT 59.996 47.826 1.43 0.00 0.00 3.08
2998 3039 3.251729 TCGGACGGTCGAGAATAAATAGG 59.748 47.826 1.43 0.00 34.82 2.57
2999 3040 4.478843 TCGGACGGTCGAGAATAAATAG 57.521 45.455 1.43 0.00 34.82 1.73
3000 3041 5.443185 AATCGGACGGTCGAGAATAAATA 57.557 39.130 8.59 0.00 42.69 1.40
3001 3042 4.317671 AATCGGACGGTCGAGAATAAAT 57.682 40.909 8.59 0.00 42.69 1.40
3002 3043 3.788333 AATCGGACGGTCGAGAATAAA 57.212 42.857 8.59 0.00 42.69 1.40
3003 3044 3.788333 AAATCGGACGGTCGAGAATAA 57.212 42.857 8.59 0.00 42.69 1.40
3004 3045 4.898829 TTAAATCGGACGGTCGAGAATA 57.101 40.909 8.59 4.04 42.69 1.75
3005 3046 3.788333 TTAAATCGGACGGTCGAGAAT 57.212 42.857 8.59 0.00 42.69 2.40
3006 3047 3.699067 GATTAAATCGGACGGTCGAGAA 58.301 45.455 8.59 3.66 42.69 2.87
3007 3048 3.344904 GATTAAATCGGACGGTCGAGA 57.655 47.619 1.43 4.81 42.69 4.04
3019 3060 4.524053 AGTTTGGACCCTCCGATTAAATC 58.476 43.478 0.00 0.00 40.17 2.17
3020 3061 4.586306 AGTTTGGACCCTCCGATTAAAT 57.414 40.909 0.00 0.00 40.17 1.40
3021 3062 4.376225 AAGTTTGGACCCTCCGATTAAA 57.624 40.909 0.00 0.00 40.17 1.52
3022 3063 5.247862 GTTAAGTTTGGACCCTCCGATTAA 58.752 41.667 0.00 0.00 40.17 1.40
3023 3064 4.323715 GGTTAAGTTTGGACCCTCCGATTA 60.324 45.833 0.00 0.00 40.17 1.75
3024 3065 3.560668 GGTTAAGTTTGGACCCTCCGATT 60.561 47.826 0.00 0.00 40.17 3.34
3025 3066 2.026542 GGTTAAGTTTGGACCCTCCGAT 60.027 50.000 0.00 0.00 40.17 4.18
3026 3067 1.348696 GGTTAAGTTTGGACCCTCCGA 59.651 52.381 0.00 0.00 40.17 4.55
3027 3068 1.817357 GGTTAAGTTTGGACCCTCCG 58.183 55.000 0.00 0.00 40.17 4.63
3032 3073 3.520691 AAGGAGGGTTAAGTTTGGACC 57.479 47.619 0.00 0.00 0.00 4.46
3033 3074 5.138276 AGAAAAGGAGGGTTAAGTTTGGAC 58.862 41.667 0.00 0.00 0.00 4.02
3034 3075 5.397553 AGAAAAGGAGGGTTAAGTTTGGA 57.602 39.130 0.00 0.00 0.00 3.53
3067 3108 8.766476 GTTTTAGGGTTAGGAAAGTAGGTCTAT 58.234 37.037 0.00 0.00 0.00 1.98
3068 3109 7.180946 GGTTTTAGGGTTAGGAAAGTAGGTCTA 59.819 40.741 0.00 0.00 0.00 2.59
3069 3110 6.013032 GGTTTTAGGGTTAGGAAAGTAGGTCT 60.013 42.308 0.00 0.00 0.00 3.85
3070 3111 6.013032 AGGTTTTAGGGTTAGGAAAGTAGGTC 60.013 42.308 0.00 0.00 0.00 3.85
3071 3112 5.853922 AGGTTTTAGGGTTAGGAAAGTAGGT 59.146 40.000 0.00 0.00 0.00 3.08
3072 3113 6.384342 AGGTTTTAGGGTTAGGAAAGTAGG 57.616 41.667 0.00 0.00 0.00 3.18
3073 3114 7.563020 CCTAGGTTTTAGGGTTAGGAAAGTAG 58.437 42.308 0.00 0.00 34.17 2.57
3074 3115 6.070021 GCCTAGGTTTTAGGGTTAGGAAAGTA 60.070 42.308 11.31 0.00 34.17 2.24
3075 3116 5.280882 GCCTAGGTTTTAGGGTTAGGAAAGT 60.281 44.000 11.31 0.00 34.17 2.66
3076 3117 5.045066 AGCCTAGGTTTTAGGGTTAGGAAAG 60.045 44.000 11.31 0.00 42.22 2.62
3077 3118 4.853856 AGCCTAGGTTTTAGGGTTAGGAAA 59.146 41.667 11.31 0.00 42.22 3.13
3078 3119 4.441757 AGCCTAGGTTTTAGGGTTAGGAA 58.558 43.478 11.31 0.00 42.22 3.36
3079 3120 4.084466 AGCCTAGGTTTTAGGGTTAGGA 57.916 45.455 11.31 0.00 42.22 2.94
3084 3125 3.561528 GCAAGAAGCCTAGGTTTTAGGGT 60.562 47.826 12.62 0.00 46.35 4.34
3085 3126 3.017442 GCAAGAAGCCTAGGTTTTAGGG 58.983 50.000 12.62 4.43 37.23 3.53
3098 3139 3.880846 CGCGATGGGGCAAGAAGC 61.881 66.667 0.00 0.00 44.65 3.86
3116 3157 4.506255 GGATTGAGCGGGTGGGGG 62.506 72.222 0.00 0.00 0.00 5.40
3117 3158 3.411517 AGGATTGAGCGGGTGGGG 61.412 66.667 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.