Multiple sequence alignment - TraesCS6A01G359300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G359300 chr6A 100.000 3452 0 0 1 3452 590676275 590672824 0.000000e+00 6375.0
1 TraesCS6A01G359300 chr6A 94.911 393 20 0 1 393 523002378 523001986 1.760000e-172 616.0
2 TraesCS6A01G359300 chr3B 98.954 3060 25 5 398 3452 9889020 9885963 0.000000e+00 5467.0
3 TraesCS6A01G359300 chr3B 80.745 161 25 5 392 547 736473222 736473381 1.680000e-23 121.0
4 TraesCS6A01G359300 chr7A 97.126 3027 65 5 445 3452 75358418 75361441 0.000000e+00 5088.0
5 TraesCS6A01G359300 chr7A 94.629 391 19 2 1 391 634412303 634412691 3.810000e-169 604.0
6 TraesCS6A01G359300 chr7A 85.714 147 13 4 630 774 730308140 730308280 7.720000e-32 148.0
7 TraesCS6A01G359300 chr7A 85.714 147 13 4 630 774 730355145 730355285 7.720000e-32 148.0
8 TraesCS6A01G359300 chr2A 98.844 2423 28 0 1030 3452 698197702 698195280 0.000000e+00 4320.0
9 TraesCS6A01G359300 chr2A 97.183 568 12 3 399 965 698203980 698203416 0.000000e+00 957.0
10 TraesCS6A01G359300 chr2A 91.107 506 38 2 2724 3229 737423434 737422936 0.000000e+00 678.0
11 TraesCS6A01G359300 chr2A 91.525 177 14 1 1564 1739 257014163 257014339 3.440000e-60 243.0
12 TraesCS6A01G359300 chr2A 78.889 180 32 6 407 582 22589585 22589762 2.180000e-22 117.0
13 TraesCS6A01G359300 chr2A 96.875 32 0 1 965 996 698197730 698197700 6.000000e-03 52.8
14 TraesCS6A01G359300 chr7D 91.854 1510 103 14 839 2333 617831456 617829952 0.000000e+00 2089.0
15 TraesCS6A01G359300 chr7D 90.636 1100 76 9 2362 3452 617829956 617828875 0.000000e+00 1435.0
16 TraesCS6A01G359300 chr7D 90.283 813 62 6 839 1648 386517163 386516365 0.000000e+00 1048.0
17 TraesCS6A01G359300 chr7D 92.945 652 41 5 1683 2333 386516365 386515718 0.000000e+00 944.0
18 TraesCS6A01G359300 chr7D 87.526 489 49 6 2362 2842 386515722 386515238 3.890000e-154 555.0
19 TraesCS6A01G359300 chr6D 91.636 538 38 2 2724 3261 337762314 337762844 0.000000e+00 737.0
20 TraesCS6A01G359300 chr6D 93.750 128 7 1 3326 3452 337762845 337762972 1.260000e-44 191.0
21 TraesCS6A01G359300 chr4D 91.095 539 39 4 2724 3261 499724578 499725108 0.000000e+00 721.0
22 TraesCS6A01G359300 chr4D 90.149 538 44 4 2724 3261 508478467 508478995 0.000000e+00 691.0
23 TraesCS6A01G359300 chr4D 95.161 124 5 1 3330 3452 508479000 508479123 9.780000e-46 195.0
24 TraesCS6A01G359300 chr4D 94.400 125 6 1 3329 3452 499725112 499725236 1.260000e-44 191.0
25 TraesCS6A01G359300 chr2D 90.530 528 43 3 2733 3260 331546292 331545772 0.000000e+00 691.0
26 TraesCS6A01G359300 chr2D 89.693 456 43 4 1290 1742 207480309 207479855 2.310000e-161 579.0
27 TraesCS6A01G359300 chr2D 78.409 176 30 8 411 582 647524611 647524440 1.310000e-19 108.0
28 TraesCS6A01G359300 chr4A 95.396 391 18 0 1 391 63044860 63045250 1.050000e-174 623.0
29 TraesCS6A01G359300 chr4A 95.153 392 18 1 1 391 147051355 147051746 4.890000e-173 617.0
30 TraesCS6A01G359300 chr4A 94.629 391 21 0 1 391 442008030 442008420 1.060000e-169 606.0
31 TraesCS6A01G359300 chr4A 77.717 184 37 4 396 577 729649442 729649261 3.640000e-20 110.0
32 TraesCS6A01G359300 chr1A 95.141 391 19 0 1 391 113214319 113213929 4.890000e-173 617.0
33 TraesCS6A01G359300 chr3A 94.885 391 20 0 1 391 340951873 340951483 2.280000e-171 612.0
34 TraesCS6A01G359300 chr3A 94.656 393 21 0 1 393 133756161 133756553 8.190000e-171 610.0
35 TraesCS6A01G359300 chr5A 94.629 391 21 0 1 391 157039295 157038905 1.060000e-169 606.0
36 TraesCS6A01G359300 chr5A 93.750 128 7 1 3326 3452 692544815 692544942 1.260000e-44 191.0
37 TraesCS6A01G359300 chr5A 93.750 128 7 1 3326 3452 692551384 692551511 1.260000e-44 191.0
38 TraesCS6A01G359300 chr5D 88.623 167 17 2 1037 1201 238665957 238666123 5.840000e-48 202.0
39 TraesCS6A01G359300 chr5B 80.838 167 22 10 392 552 455492668 455492830 4.680000e-24 122.0
40 TraesCS6A01G359300 chr4B 79.747 158 28 4 392 547 489159060 489159215 1.010000e-20 111.0
41 TraesCS6A01G359300 chr1B 78.916 166 33 2 392 555 26717923 26717758 1.010000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G359300 chr6A 590672824 590676275 3451 True 6375.0 6375 100.000000 1 3452 1 chr6A.!!$R2 3451
1 TraesCS6A01G359300 chr3B 9885963 9889020 3057 True 5467.0 5467 98.954000 398 3452 1 chr3B.!!$R1 3054
2 TraesCS6A01G359300 chr7A 75358418 75361441 3023 False 5088.0 5088 97.126000 445 3452 1 chr7A.!!$F1 3007
3 TraesCS6A01G359300 chr2A 698195280 698197730 2450 True 2186.4 4320 97.859500 965 3452 2 chr2A.!!$R3 2487
4 TraesCS6A01G359300 chr2A 698203416 698203980 564 True 957.0 957 97.183000 399 965 1 chr2A.!!$R1 566
5 TraesCS6A01G359300 chr7D 617828875 617831456 2581 True 1762.0 2089 91.245000 839 3452 2 chr7D.!!$R2 2613
6 TraesCS6A01G359300 chr7D 386515238 386517163 1925 True 849.0 1048 90.251333 839 2842 3 chr7D.!!$R1 2003
7 TraesCS6A01G359300 chr6D 337762314 337762972 658 False 464.0 737 92.693000 2724 3452 2 chr6D.!!$F1 728
8 TraesCS6A01G359300 chr4D 499724578 499725236 658 False 456.0 721 92.747500 2724 3452 2 chr4D.!!$F1 728
9 TraesCS6A01G359300 chr4D 508478467 508479123 656 False 443.0 691 92.655000 2724 3452 2 chr4D.!!$F2 728
10 TraesCS6A01G359300 chr2D 331545772 331546292 520 True 691.0 691 90.530000 2733 3260 1 chr2D.!!$R2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 239 0.035056 GAAGCCCTAGCAGCCTTCAA 60.035 55.0 4.07 0.0 43.56 2.69 F
309 310 0.041535 AAAATCCATGGCAGCCCTCA 59.958 50.0 9.64 0.0 0.00 3.86 F
360 361 0.109723 GGACAGTTGGTTGGCCTGTA 59.890 55.0 3.32 0.0 43.36 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 2270 1.755959 AGGCTGCAAAAACATGTCACA 59.244 42.857 0.0 0.0 0.00 3.58 R
2425 2458 3.600388 ACCAGAAAATAAGAGTGCTCGG 58.400 45.455 0.0 0.0 34.09 4.63 R
3182 3228 1.068610 GCTACGGCAAAACAATGCTCA 60.069 47.619 0.0 0.0 45.68 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.383861 CAGCTCGGCACTGGCTCA 62.384 66.667 0.52 0.00 40.87 4.26
22 23 3.630013 AGCTCGGCACTGGCTCAA 61.630 61.111 0.52 0.00 40.87 3.02
23 24 3.426568 GCTCGGCACTGGCTCAAC 61.427 66.667 0.52 0.00 40.87 3.18
24 25 2.031012 CTCGGCACTGGCTCAACA 59.969 61.111 0.52 0.00 40.87 3.33
25 26 2.031012 TCGGCACTGGCTCAACAG 59.969 61.111 0.52 0.00 44.03 3.16
34 35 1.534595 CTGGCTCAACAGTCTTCTTGC 59.465 52.381 0.00 0.00 33.81 4.01
35 36 1.134128 TGGCTCAACAGTCTTCTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
36 37 1.949525 GGCTCAACAGTCTTCTTGCAA 59.050 47.619 0.00 0.00 0.00 4.08
37 38 2.358898 GGCTCAACAGTCTTCTTGCAAA 59.641 45.455 0.00 0.00 0.00 3.68
38 39 3.005155 GGCTCAACAGTCTTCTTGCAAAT 59.995 43.478 0.00 0.00 0.00 2.32
39 40 4.500375 GGCTCAACAGTCTTCTTGCAAATT 60.500 41.667 0.00 0.00 0.00 1.82
40 41 4.678742 GCTCAACAGTCTTCTTGCAAATTC 59.321 41.667 0.00 0.00 0.00 2.17
41 42 5.506982 GCTCAACAGTCTTCTTGCAAATTCT 60.507 40.000 0.00 0.00 0.00 2.40
42 43 6.293626 GCTCAACAGTCTTCTTGCAAATTCTA 60.294 38.462 0.00 0.00 0.00 2.10
43 44 7.574592 GCTCAACAGTCTTCTTGCAAATTCTAT 60.575 37.037 0.00 0.00 0.00 1.98
44 45 8.169977 TCAACAGTCTTCTTGCAAATTCTATT 57.830 30.769 0.00 0.00 0.00 1.73
45 46 8.077991 TCAACAGTCTTCTTGCAAATTCTATTG 58.922 33.333 0.00 1.67 0.00 1.90
46 47 6.917533 ACAGTCTTCTTGCAAATTCTATTGG 58.082 36.000 0.00 0.00 0.00 3.16
47 48 5.803967 CAGTCTTCTTGCAAATTCTATTGGC 59.196 40.000 0.00 0.00 0.00 4.52
48 49 5.477984 AGTCTTCTTGCAAATTCTATTGGCA 59.522 36.000 0.00 0.00 0.00 4.92
49 50 5.803967 GTCTTCTTGCAAATTCTATTGGCAG 59.196 40.000 0.00 0.00 0.00 4.85
50 51 4.114058 TCTTGCAAATTCTATTGGCAGC 57.886 40.909 0.00 0.00 0.00 5.25
51 52 3.765511 TCTTGCAAATTCTATTGGCAGCT 59.234 39.130 0.00 0.00 0.00 4.24
52 53 3.513680 TGCAAATTCTATTGGCAGCTG 57.486 42.857 10.11 10.11 0.00 4.24
53 54 2.166870 TGCAAATTCTATTGGCAGCTGG 59.833 45.455 17.12 0.00 0.00 4.85
54 55 2.482490 GCAAATTCTATTGGCAGCTGGG 60.482 50.000 17.12 0.00 0.00 4.45
55 56 3.025978 CAAATTCTATTGGCAGCTGGGA 58.974 45.455 17.12 0.00 0.00 4.37
56 57 2.653234 ATTCTATTGGCAGCTGGGAG 57.347 50.000 17.12 0.00 0.00 4.30
57 58 0.548031 TTCTATTGGCAGCTGGGAGG 59.452 55.000 17.12 0.00 0.00 4.30
58 59 0.326522 TCTATTGGCAGCTGGGAGGA 60.327 55.000 17.12 0.00 0.00 3.71
59 60 0.179034 CTATTGGCAGCTGGGAGGAC 60.179 60.000 17.12 0.00 0.00 3.85
60 61 0.621571 TATTGGCAGCTGGGAGGACT 60.622 55.000 17.12 0.00 0.00 3.85
61 62 1.504275 ATTGGCAGCTGGGAGGACTT 61.504 55.000 17.12 0.00 0.00 3.01
62 63 2.045536 GGCAGCTGGGAGGACTTG 60.046 66.667 17.12 0.00 0.00 3.16
63 64 2.045536 GCAGCTGGGAGGACTTGG 60.046 66.667 17.12 0.00 0.00 3.61
64 65 2.596851 GCAGCTGGGAGGACTTGGA 61.597 63.158 17.12 0.00 0.00 3.53
65 66 2.069776 CAGCTGGGAGGACTTGGAA 58.930 57.895 5.57 0.00 0.00 3.53
66 67 0.035630 CAGCTGGGAGGACTTGGAAG 60.036 60.000 5.57 0.00 0.00 3.46
67 68 0.178891 AGCTGGGAGGACTTGGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
68 69 0.251634 GCTGGGAGGACTTGGAAGAG 59.748 60.000 0.00 0.00 0.00 2.85
69 70 0.908198 CTGGGAGGACTTGGAAGAGG 59.092 60.000 0.00 0.00 0.00 3.69
70 71 1.201429 TGGGAGGACTTGGAAGAGGC 61.201 60.000 0.00 0.00 0.00 4.70
71 72 1.604915 GGAGGACTTGGAAGAGGCC 59.395 63.158 0.00 0.00 45.88 5.19
74 75 3.560534 GGACTTGGAAGAGGCCTTC 57.439 57.895 6.77 0.00 46.19 3.46
84 85 4.495690 GAAGAGGCCTTCCTTGATAACT 57.504 45.455 6.77 0.00 44.46 2.24
85 86 4.849518 GAAGAGGCCTTCCTTGATAACTT 58.150 43.478 6.77 0.28 44.46 2.66
86 87 4.495690 AGAGGCCTTCCTTGATAACTTC 57.504 45.455 6.77 0.00 44.46 3.01
87 88 3.201045 AGAGGCCTTCCTTGATAACTTCC 59.799 47.826 6.77 0.00 44.46 3.46
88 89 2.919602 AGGCCTTCCTTGATAACTTCCA 59.080 45.455 0.00 0.00 40.66 3.53
89 90 3.333680 AGGCCTTCCTTGATAACTTCCAA 59.666 43.478 0.00 0.00 40.66 3.53
90 91 3.696548 GGCCTTCCTTGATAACTTCCAAG 59.303 47.826 0.00 0.00 39.43 3.61
100 101 8.964476 CTTGATAACTTCCAAGGTACATATGT 57.036 34.615 13.93 13.93 36.90 2.29
101 102 9.396022 CTTGATAACTTCCAAGGTACATATGTT 57.604 33.333 14.77 0.00 36.90 2.71
102 103 8.958119 TGATAACTTCCAAGGTACATATGTTC 57.042 34.615 14.77 8.93 29.57 3.18
103 104 7.709182 TGATAACTTCCAAGGTACATATGTTCG 59.291 37.037 14.77 0.00 29.57 3.95
104 105 5.670792 ACTTCCAAGGTACATATGTTCGA 57.329 39.130 14.77 0.00 0.00 3.71
105 106 5.416947 ACTTCCAAGGTACATATGTTCGAC 58.583 41.667 14.77 6.18 0.00 4.20
106 107 4.395959 TCCAAGGTACATATGTTCGACC 57.604 45.455 14.77 15.33 0.00 4.79
107 108 4.028131 TCCAAGGTACATATGTTCGACCT 58.972 43.478 19.10 19.10 42.41 3.85
108 109 5.202765 TCCAAGGTACATATGTTCGACCTA 58.797 41.667 23.19 10.07 39.65 3.08
109 110 5.068198 TCCAAGGTACATATGTTCGACCTAC 59.932 44.000 23.19 10.69 39.65 3.18
110 111 4.825546 AGGTACATATGTTCGACCTACG 57.174 45.455 22.10 0.00 38.77 3.51
111 112 3.567164 AGGTACATATGTTCGACCTACGG 59.433 47.826 22.10 0.00 38.77 4.02
112 113 3.565482 GGTACATATGTTCGACCTACGGA 59.435 47.826 14.77 0.00 42.82 4.69
116 117 2.873288 GTTCGACCTACGGACGCT 59.127 61.111 0.06 0.00 40.77 5.07
117 118 1.513586 GTTCGACCTACGGACGCTG 60.514 63.158 0.06 0.00 40.77 5.18
118 119 1.672030 TTCGACCTACGGACGCTGA 60.672 57.895 0.06 0.00 40.30 4.26
119 120 1.028330 TTCGACCTACGGACGCTGAT 61.028 55.000 0.06 0.00 40.30 2.90
120 121 1.298413 CGACCTACGGACGCTGATG 60.298 63.158 0.00 0.00 34.05 3.07
121 122 1.712018 CGACCTACGGACGCTGATGA 61.712 60.000 0.00 0.00 34.05 2.92
122 123 0.248539 GACCTACGGACGCTGATGAC 60.249 60.000 0.00 0.00 0.00 3.06
123 124 0.680280 ACCTACGGACGCTGATGACT 60.680 55.000 0.00 0.00 0.00 3.41
124 125 0.456221 CCTACGGACGCTGATGACTT 59.544 55.000 0.00 0.00 0.00 3.01
125 126 1.674441 CCTACGGACGCTGATGACTTA 59.326 52.381 0.00 0.00 0.00 2.24
126 127 2.098607 CCTACGGACGCTGATGACTTAA 59.901 50.000 0.00 0.00 0.00 1.85
127 128 2.279582 ACGGACGCTGATGACTTAAG 57.720 50.000 0.00 0.00 0.00 1.85
128 129 1.135083 ACGGACGCTGATGACTTAAGG 60.135 52.381 7.53 0.00 0.00 2.69
129 130 1.291132 GGACGCTGATGACTTAAGGC 58.709 55.000 7.53 3.92 0.00 4.35
130 131 1.405526 GGACGCTGATGACTTAAGGCA 60.406 52.381 14.80 14.80 0.00 4.75
131 132 2.555199 GACGCTGATGACTTAAGGCAT 58.445 47.619 24.11 24.11 0.00 4.40
132 133 3.492656 GGACGCTGATGACTTAAGGCATA 60.493 47.826 23.92 11.24 0.00 3.14
133 134 4.310769 GACGCTGATGACTTAAGGCATAT 58.689 43.478 23.92 3.59 0.00 1.78
134 135 5.468540 ACGCTGATGACTTAAGGCATATA 57.531 39.130 23.92 14.55 0.00 0.86
135 136 5.473931 ACGCTGATGACTTAAGGCATATAG 58.526 41.667 23.92 22.88 0.00 1.31
136 137 5.011125 ACGCTGATGACTTAAGGCATATAGT 59.989 40.000 23.92 17.19 0.00 2.12
137 138 5.928839 CGCTGATGACTTAAGGCATATAGTT 59.071 40.000 23.92 1.02 0.00 2.24
138 139 6.090088 CGCTGATGACTTAAGGCATATAGTTC 59.910 42.308 23.92 11.79 0.00 3.01
139 140 6.931281 GCTGATGACTTAAGGCATATAGTTCA 59.069 38.462 23.92 15.69 0.00 3.18
140 141 7.442364 GCTGATGACTTAAGGCATATAGTTCAA 59.558 37.037 23.92 2.33 0.00 2.69
141 142 8.662781 TGATGACTTAAGGCATATAGTTCAAC 57.337 34.615 23.92 8.67 0.00 3.18
142 143 8.264347 TGATGACTTAAGGCATATAGTTCAACA 58.736 33.333 23.92 11.16 0.00 3.33
143 144 8.668510 ATGACTTAAGGCATATAGTTCAACAG 57.331 34.615 22.68 0.00 0.00 3.16
144 145 7.620880 TGACTTAAGGCATATAGTTCAACAGT 58.379 34.615 7.01 0.00 0.00 3.55
145 146 7.764443 TGACTTAAGGCATATAGTTCAACAGTC 59.236 37.037 7.01 0.00 0.00 3.51
146 147 7.048512 ACTTAAGGCATATAGTTCAACAGTCC 58.951 38.462 7.53 0.00 0.00 3.85
147 148 4.060038 AGGCATATAGTTCAACAGTCCG 57.940 45.455 0.00 0.00 0.00 4.79
148 149 3.131396 GGCATATAGTTCAACAGTCCGG 58.869 50.000 0.00 0.00 0.00 5.14
149 150 3.181469 GGCATATAGTTCAACAGTCCGGA 60.181 47.826 0.00 0.00 0.00 5.14
150 151 4.051922 GCATATAGTTCAACAGTCCGGAG 58.948 47.826 3.06 0.00 0.00 4.63
151 152 4.202121 GCATATAGTTCAACAGTCCGGAGA 60.202 45.833 3.06 0.00 0.00 3.71
152 153 5.524284 CATATAGTTCAACAGTCCGGAGAG 58.476 45.833 3.06 2.17 0.00 3.20
153 154 1.705873 AGTTCAACAGTCCGGAGAGT 58.294 50.000 3.06 2.98 0.00 3.24
154 155 1.614413 AGTTCAACAGTCCGGAGAGTC 59.386 52.381 3.06 0.00 0.00 3.36
155 156 0.966920 TTCAACAGTCCGGAGAGTCC 59.033 55.000 3.06 0.00 0.00 3.85
180 181 5.428184 CAGGAAATTCTGGACTAGGTTCT 57.572 43.478 0.00 0.00 0.00 3.01
181 182 5.810095 CAGGAAATTCTGGACTAGGTTCTT 58.190 41.667 0.00 0.00 0.00 2.52
182 183 6.947464 CAGGAAATTCTGGACTAGGTTCTTA 58.053 40.000 0.00 0.00 0.00 2.10
183 184 7.394816 CAGGAAATTCTGGACTAGGTTCTTAA 58.605 38.462 0.00 0.00 0.00 1.85
184 185 7.334671 CAGGAAATTCTGGACTAGGTTCTTAAC 59.665 40.741 0.00 0.00 0.00 2.01
185 186 7.237887 AGGAAATTCTGGACTAGGTTCTTAACT 59.762 37.037 0.00 0.00 0.00 2.24
186 187 8.537858 GGAAATTCTGGACTAGGTTCTTAACTA 58.462 37.037 0.00 0.00 0.00 2.24
187 188 9.939802 GAAATTCTGGACTAGGTTCTTAACTAA 57.060 33.333 0.00 0.00 0.00 2.24
191 192 9.774413 TTCTGGACTAGGTTCTTAACTAAAAAG 57.226 33.333 0.00 0.00 0.00 2.27
192 193 9.151177 TCTGGACTAGGTTCTTAACTAAAAAGA 57.849 33.333 0.00 0.00 0.00 2.52
193 194 9.774413 CTGGACTAGGTTCTTAACTAAAAAGAA 57.226 33.333 0.00 0.00 39.91 2.52
208 209 8.970691 ACTAAAAAGAACCAAATCATCGATTG 57.029 30.769 0.00 0.00 32.14 2.67
209 210 8.576442 ACTAAAAAGAACCAAATCATCGATTGT 58.424 29.630 0.00 0.00 32.14 2.71
210 211 7.873739 AAAAAGAACCAAATCATCGATTGTC 57.126 32.000 0.00 0.00 32.14 3.18
211 212 6.824305 AAAGAACCAAATCATCGATTGTCT 57.176 33.333 0.00 0.00 32.14 3.41
212 213 5.808042 AGAACCAAATCATCGATTGTCTG 57.192 39.130 0.00 0.00 32.14 3.51
213 214 4.637534 AGAACCAAATCATCGATTGTCTGG 59.362 41.667 0.00 3.47 35.06 3.86
214 215 4.220693 ACCAAATCATCGATTGTCTGGA 57.779 40.909 16.44 2.48 33.55 3.86
215 216 4.785301 ACCAAATCATCGATTGTCTGGAT 58.215 39.130 16.44 4.54 33.55 3.41
216 217 4.577693 ACCAAATCATCGATTGTCTGGATG 59.422 41.667 16.44 0.00 40.41 3.51
217 218 4.534168 CAAATCATCGATTGTCTGGATGC 58.466 43.478 0.00 0.00 39.29 3.91
218 219 2.245159 TCATCGATTGTCTGGATGCC 57.755 50.000 0.00 0.00 39.29 4.40
219 220 0.863799 CATCGATTGTCTGGATGCCG 59.136 55.000 0.00 0.00 33.98 5.69
220 221 0.752658 ATCGATTGTCTGGATGCCGA 59.247 50.000 0.00 0.00 0.00 5.54
221 222 0.534873 TCGATTGTCTGGATGCCGAA 59.465 50.000 0.00 0.00 0.00 4.30
222 223 0.933097 CGATTGTCTGGATGCCGAAG 59.067 55.000 0.00 0.00 0.00 3.79
223 224 0.659957 GATTGTCTGGATGCCGAAGC 59.340 55.000 0.00 0.00 40.48 3.86
224 225 0.749454 ATTGTCTGGATGCCGAAGCC 60.749 55.000 0.00 0.00 38.69 4.35
225 226 2.514824 GTCTGGATGCCGAAGCCC 60.515 66.667 0.00 0.00 38.69 5.19
226 227 2.688666 TCTGGATGCCGAAGCCCT 60.689 61.111 0.00 0.00 38.69 5.19
227 228 1.382557 TCTGGATGCCGAAGCCCTA 60.383 57.895 0.00 0.00 38.69 3.53
228 229 1.070445 CTGGATGCCGAAGCCCTAG 59.930 63.158 0.00 0.00 38.69 3.02
229 230 2.281139 GGATGCCGAAGCCCTAGC 60.281 66.667 0.00 0.00 38.69 3.42
230 231 2.505982 GATGCCGAAGCCCTAGCA 59.494 61.111 0.00 0.00 43.56 3.49
231 232 1.596477 GATGCCGAAGCCCTAGCAG 60.596 63.158 0.00 0.00 43.56 4.24
232 233 3.764160 ATGCCGAAGCCCTAGCAGC 62.764 63.158 0.00 0.00 43.56 5.25
234 235 3.474570 CCGAAGCCCTAGCAGCCT 61.475 66.667 0.00 0.00 43.56 4.58
235 236 2.586792 CGAAGCCCTAGCAGCCTT 59.413 61.111 0.00 0.00 43.56 4.35
236 237 1.522580 CGAAGCCCTAGCAGCCTTC 60.523 63.158 0.00 0.00 43.56 3.46
237 238 1.604378 GAAGCCCTAGCAGCCTTCA 59.396 57.895 4.07 0.00 43.56 3.02
238 239 0.035056 GAAGCCCTAGCAGCCTTCAA 60.035 55.000 4.07 0.00 43.56 2.69
239 240 0.405585 AAGCCCTAGCAGCCTTCAAA 59.594 50.000 0.00 0.00 43.56 2.69
240 241 0.322906 AGCCCTAGCAGCCTTCAAAC 60.323 55.000 0.00 0.00 43.56 2.93
241 242 0.609131 GCCCTAGCAGCCTTCAAACA 60.609 55.000 0.00 0.00 39.53 2.83
242 243 1.168714 CCCTAGCAGCCTTCAAACAC 58.831 55.000 0.00 0.00 0.00 3.32
243 244 1.545428 CCCTAGCAGCCTTCAAACACA 60.545 52.381 0.00 0.00 0.00 3.72
244 245 1.808945 CCTAGCAGCCTTCAAACACAG 59.191 52.381 0.00 0.00 0.00 3.66
245 246 1.198637 CTAGCAGCCTTCAAACACAGC 59.801 52.381 0.00 0.00 0.00 4.40
246 247 0.752743 AGCAGCCTTCAAACACAGCA 60.753 50.000 0.00 0.00 0.00 4.41
247 248 0.316204 GCAGCCTTCAAACACAGCAT 59.684 50.000 0.00 0.00 0.00 3.79
248 249 1.668047 GCAGCCTTCAAACACAGCATC 60.668 52.381 0.00 0.00 0.00 3.91
249 250 1.068055 CAGCCTTCAAACACAGCATCC 60.068 52.381 0.00 0.00 0.00 3.51
250 251 0.109597 GCCTTCAAACACAGCATCCG 60.110 55.000 0.00 0.00 0.00 4.18
251 252 0.109597 CCTTCAAACACAGCATCCGC 60.110 55.000 0.00 0.00 38.99 5.54
252 253 0.453282 CTTCAAACACAGCATCCGCG 60.453 55.000 0.00 0.00 45.49 6.46
253 254 0.882484 TTCAAACACAGCATCCGCGA 60.882 50.000 8.23 0.00 45.49 5.87
254 255 1.154413 CAAACACAGCATCCGCGAC 60.154 57.895 8.23 0.00 45.49 5.19
255 256 2.667318 AAACACAGCATCCGCGACG 61.667 57.895 8.23 0.00 45.49 5.12
256 257 3.567478 AACACAGCATCCGCGACGA 62.567 57.895 8.23 0.00 45.49 4.20
257 258 2.809174 CACAGCATCCGCGACGAA 60.809 61.111 8.23 0.00 45.49 3.85
258 259 2.167219 CACAGCATCCGCGACGAAT 61.167 57.895 8.23 0.00 45.49 3.34
259 260 2.167219 ACAGCATCCGCGACGAATG 61.167 57.895 8.23 7.03 45.49 2.67
260 261 2.586079 AGCATCCGCGACGAATGG 60.586 61.111 8.23 0.00 45.49 3.16
261 262 4.299316 GCATCCGCGACGAATGGC 62.299 66.667 8.23 0.00 0.00 4.40
262 263 2.586079 CATCCGCGACGAATGGCT 60.586 61.111 8.23 0.00 0.00 4.75
263 264 2.279517 ATCCGCGACGAATGGCTC 60.280 61.111 8.23 0.00 0.00 4.70
278 279 4.838486 CTCGCTCGCCACCTCGAC 62.838 72.222 0.00 0.00 34.46 4.20
281 282 4.373116 GCTCGCCACCTCGACCAA 62.373 66.667 0.00 0.00 34.46 3.67
282 283 2.432628 CTCGCCACCTCGACCAAC 60.433 66.667 0.00 0.00 34.46 3.77
283 284 3.220999 CTCGCCACCTCGACCAACA 62.221 63.158 0.00 0.00 34.46 3.33
284 285 2.280524 CGCCACCTCGACCAACAA 60.281 61.111 0.00 0.00 0.00 2.83
285 286 1.890041 CGCCACCTCGACCAACAAA 60.890 57.895 0.00 0.00 0.00 2.83
286 287 1.440938 CGCCACCTCGACCAACAAAA 61.441 55.000 0.00 0.00 0.00 2.44
287 288 0.310854 GCCACCTCGACCAACAAAAG 59.689 55.000 0.00 0.00 0.00 2.27
288 289 0.310854 CCACCTCGACCAACAAAAGC 59.689 55.000 0.00 0.00 0.00 3.51
289 290 0.310854 CACCTCGACCAACAAAAGCC 59.689 55.000 0.00 0.00 0.00 4.35
290 291 0.106918 ACCTCGACCAACAAAAGCCA 60.107 50.000 0.00 0.00 0.00 4.75
291 292 1.028905 CCTCGACCAACAAAAGCCAA 58.971 50.000 0.00 0.00 0.00 4.52
292 293 1.407258 CCTCGACCAACAAAAGCCAAA 59.593 47.619 0.00 0.00 0.00 3.28
293 294 2.159170 CCTCGACCAACAAAAGCCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
294 295 3.492482 CCTCGACCAACAAAAGCCAAAAT 60.492 43.478 0.00 0.00 0.00 1.82
295 296 3.712187 TCGACCAACAAAAGCCAAAATC 58.288 40.909 0.00 0.00 0.00 2.17
296 297 2.799978 CGACCAACAAAAGCCAAAATCC 59.200 45.455 0.00 0.00 0.00 3.01
297 298 3.739519 CGACCAACAAAAGCCAAAATCCA 60.740 43.478 0.00 0.00 0.00 3.41
298 299 4.388485 GACCAACAAAAGCCAAAATCCAT 58.612 39.130 0.00 0.00 0.00 3.41
299 300 4.136051 ACCAACAAAAGCCAAAATCCATG 58.864 39.130 0.00 0.00 0.00 3.66
300 301 3.502979 CCAACAAAAGCCAAAATCCATGG 59.497 43.478 4.97 4.97 41.08 3.66
306 307 1.523524 CCAAAATCCATGGCAGCCC 59.476 57.895 9.64 0.00 0.00 5.19
307 308 0.979187 CCAAAATCCATGGCAGCCCT 60.979 55.000 9.64 0.00 0.00 5.19
308 309 0.462789 CAAAATCCATGGCAGCCCTC 59.537 55.000 9.64 0.00 0.00 4.30
309 310 0.041535 AAAATCCATGGCAGCCCTCA 59.958 50.000 9.64 0.00 0.00 3.86
310 311 0.685458 AAATCCATGGCAGCCCTCAC 60.685 55.000 9.64 0.00 0.00 3.51
311 312 2.898920 AATCCATGGCAGCCCTCACG 62.899 60.000 9.64 0.00 0.00 4.35
321 322 4.147449 CCCTCACGGCGCTCATGA 62.147 66.667 6.90 7.99 0.00 3.07
322 323 2.125552 CCTCACGGCGCTCATGAA 60.126 61.111 6.90 0.00 0.00 2.57
323 324 2.456119 CCTCACGGCGCTCATGAAC 61.456 63.158 6.90 0.00 0.00 3.18
324 325 2.434185 TCACGGCGCTCATGAACC 60.434 61.111 6.90 0.00 0.00 3.62
328 329 3.127533 GGCGCTCATGAACCGCTT 61.128 61.111 28.37 0.00 46.29 4.68
329 330 2.690778 GGCGCTCATGAACCGCTTT 61.691 57.895 28.37 0.00 46.29 3.51
330 331 1.210155 GCGCTCATGAACCGCTTTT 59.790 52.632 24.81 0.00 43.95 2.27
331 332 1.067199 GCGCTCATGAACCGCTTTTG 61.067 55.000 24.81 4.13 43.95 2.44
332 333 0.238289 CGCTCATGAACCGCTTTTGT 59.762 50.000 0.00 0.00 0.00 2.83
333 334 1.689959 GCTCATGAACCGCTTTTGTG 58.310 50.000 0.00 0.00 0.00 3.33
334 335 1.689959 CTCATGAACCGCTTTTGTGC 58.310 50.000 0.00 0.00 0.00 4.57
342 343 4.404654 GCTTTTGTGCGGGCGAGG 62.405 66.667 0.00 0.00 0.00 4.63
343 344 2.668212 CTTTTGTGCGGGCGAGGA 60.668 61.111 0.00 0.00 0.00 3.71
344 345 2.966309 CTTTTGTGCGGGCGAGGAC 61.966 63.158 0.00 0.00 0.00 3.85
345 346 3.758973 TTTTGTGCGGGCGAGGACA 62.759 57.895 2.16 2.16 40.66 4.02
346 347 4.680237 TTGTGCGGGCGAGGACAG 62.680 66.667 6.13 0.00 43.10 3.51
348 349 4.681978 GTGCGGGCGAGGACAGTT 62.682 66.667 0.00 0.00 32.46 3.16
349 350 4.680237 TGCGGGCGAGGACAGTTG 62.680 66.667 0.00 0.00 0.00 3.16
351 352 4.003788 CGGGCGAGGACAGTTGGT 62.004 66.667 0.00 0.00 0.00 3.67
352 353 2.430367 GGGCGAGGACAGTTGGTT 59.570 61.111 0.00 0.00 0.00 3.67
353 354 1.966451 GGGCGAGGACAGTTGGTTG 60.966 63.158 0.00 0.00 0.00 3.77
354 355 1.966451 GGCGAGGACAGTTGGTTGG 60.966 63.158 0.00 0.00 0.00 3.77
355 356 2.617274 GCGAGGACAGTTGGTTGGC 61.617 63.158 0.00 0.00 0.00 4.52
358 359 3.763671 GGACAGTTGGTTGGCCTG 58.236 61.111 3.32 0.00 43.36 4.85
359 360 1.152756 GGACAGTTGGTTGGCCTGT 60.153 57.895 3.32 0.00 43.36 4.00
360 361 0.109723 GGACAGTTGGTTGGCCTGTA 59.890 55.000 3.32 0.00 43.36 2.74
361 362 1.523758 GACAGTTGGTTGGCCTGTAG 58.476 55.000 3.32 0.00 39.43 2.74
362 363 0.537371 ACAGTTGGTTGGCCTGTAGC 60.537 55.000 3.32 0.00 37.66 3.58
363 364 0.537143 CAGTTGGTTGGCCTGTAGCA 60.537 55.000 3.32 2.28 46.50 3.49
364 365 0.184933 AGTTGGTTGGCCTGTAGCAA 59.815 50.000 3.32 8.90 46.50 3.91
365 366 1.036707 GTTGGTTGGCCTGTAGCAAA 58.963 50.000 15.75 0.00 46.50 3.68
366 367 1.410882 GTTGGTTGGCCTGTAGCAAAA 59.589 47.619 15.75 0.00 46.50 2.44
367 368 1.781786 TGGTTGGCCTGTAGCAAAAA 58.218 45.000 3.32 0.00 46.50 1.94
368 369 1.410882 TGGTTGGCCTGTAGCAAAAAC 59.589 47.619 3.32 0.00 46.50 2.43
369 370 1.410882 GGTTGGCCTGTAGCAAAAACA 59.589 47.619 3.32 0.00 46.50 2.83
370 371 2.159028 GGTTGGCCTGTAGCAAAAACAA 60.159 45.455 3.32 0.00 46.50 2.83
371 372 3.494223 GGTTGGCCTGTAGCAAAAACAAT 60.494 43.478 3.32 0.00 46.50 2.71
372 373 3.383620 TGGCCTGTAGCAAAAACAATG 57.616 42.857 3.32 0.00 46.50 2.82
373 374 2.068519 GGCCTGTAGCAAAAACAATGC 58.931 47.619 0.00 0.00 46.50 3.56
374 375 2.547642 GGCCTGTAGCAAAAACAATGCA 60.548 45.455 0.00 0.00 46.22 3.96
375 376 3.129871 GCCTGTAGCAAAAACAATGCAA 58.870 40.909 0.00 0.00 46.22 4.08
376 377 3.184986 GCCTGTAGCAAAAACAATGCAAG 59.815 43.478 0.00 0.00 46.22 4.01
377 378 3.184986 CCTGTAGCAAAAACAATGCAAGC 59.815 43.478 0.00 0.00 46.22 4.01
378 379 2.793790 TGTAGCAAAAACAATGCAAGCG 59.206 40.909 0.00 0.00 46.22 4.68
379 380 2.222007 AGCAAAAACAATGCAAGCGA 57.778 40.000 0.00 0.00 46.22 4.93
380 381 1.860326 AGCAAAAACAATGCAAGCGAC 59.140 42.857 0.00 0.00 46.22 5.19
381 382 1.395820 GCAAAAACAATGCAAGCGACG 60.396 47.619 0.00 0.00 43.29 5.12
382 383 0.852136 AAAAACAATGCAAGCGACGC 59.148 45.000 13.03 13.03 0.00 5.19
383 384 0.939106 AAAACAATGCAAGCGACGCC 60.939 50.000 17.79 1.34 0.00 5.68
384 385 3.593551 AACAATGCAAGCGACGCCG 62.594 57.895 17.79 9.51 39.16 6.46
385 386 4.817063 CAATGCAAGCGACGCCGG 62.817 66.667 17.79 10.23 36.06 6.13
395 396 4.778143 GACGCCGGCACCCATCTT 62.778 66.667 28.98 0.00 0.00 2.40
396 397 4.344865 ACGCCGGCACCCATCTTT 62.345 61.111 28.98 0.00 0.00 2.52
397 398 2.124901 CGCCGGCACCCATCTTTA 60.125 61.111 28.98 0.00 0.00 1.85
398 399 1.525995 CGCCGGCACCCATCTTTAT 60.526 57.895 28.98 0.00 0.00 1.40
399 400 1.507141 CGCCGGCACCCATCTTTATC 61.507 60.000 28.98 0.00 0.00 1.75
400 401 0.179018 GCCGGCACCCATCTTTATCT 60.179 55.000 24.80 0.00 0.00 1.98
401 402 1.750682 GCCGGCACCCATCTTTATCTT 60.751 52.381 24.80 0.00 0.00 2.40
402 403 2.654863 CCGGCACCCATCTTTATCTTT 58.345 47.619 0.00 0.00 0.00 2.52
403 404 3.815809 CCGGCACCCATCTTTATCTTTA 58.184 45.455 0.00 0.00 0.00 1.85
404 405 3.564225 CCGGCACCCATCTTTATCTTTAC 59.436 47.826 0.00 0.00 0.00 2.01
405 406 3.564225 CGGCACCCATCTTTATCTTTACC 59.436 47.826 0.00 0.00 0.00 2.85
484 486 4.956075 TGCAGAAAGTCCCTCTTTTTCTTT 59.044 37.500 0.00 0.00 45.15 2.52
497 499 6.645003 CCTCTTTTTCTTTAAATTCAACCCGG 59.355 38.462 0.00 0.00 0.00 5.73
607 626 2.160171 CCCCTTCCTGTTCCCCACA 61.160 63.158 0.00 0.00 0.00 4.17
1604 1625 6.932960 GTGGTAACTCTTGCCTAGAAAAACTA 59.067 38.462 0.00 0.00 36.27 2.24
2057 2083 2.293122 CTGCGAAAATGTGACCAGGAAA 59.707 45.455 0.00 0.00 0.00 3.13
2147 2180 6.710744 AGACCTTTTAGCTTTTTCTTGATCGA 59.289 34.615 0.00 0.00 0.00 3.59
2219 2252 7.312899 ACCAAGTACTTTGCACTATATTTTGC 58.687 34.615 5.07 2.06 39.33 3.68
2425 2458 2.585247 GGGCGATCACGTGGCTAC 60.585 66.667 17.00 5.37 41.98 3.58
3182 3228 3.508845 TTGCCCTTGCTAGAGAAAGTT 57.491 42.857 0.00 0.00 38.71 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.889134 TTGAGCCAGTGCCGAGCTG 62.889 63.158 0.00 0.00 36.87 4.24
5 6 3.630013 TTGAGCCAGTGCCGAGCT 61.630 61.111 0.00 0.00 40.24 4.09
7 8 2.031012 TGTTGAGCCAGTGCCGAG 59.969 61.111 0.00 0.00 38.69 4.63
8 9 2.031012 CTGTTGAGCCAGTGCCGA 59.969 61.111 0.00 0.00 38.69 5.54
9 10 2.281070 ACTGTTGAGCCAGTGCCG 60.281 61.111 0.00 0.00 43.86 5.69
10 11 0.536006 AAGACTGTTGAGCCAGTGCC 60.536 55.000 0.00 0.00 45.46 5.01
11 12 0.871057 GAAGACTGTTGAGCCAGTGC 59.129 55.000 0.00 0.00 45.46 4.40
12 13 2.540265 AGAAGACTGTTGAGCCAGTG 57.460 50.000 0.00 0.00 45.46 3.66
14 15 1.534595 GCAAGAAGACTGTTGAGCCAG 59.465 52.381 2.63 0.00 38.45 4.85
15 16 1.134128 TGCAAGAAGACTGTTGAGCCA 60.134 47.619 2.63 0.00 0.00 4.75
16 17 1.597742 TGCAAGAAGACTGTTGAGCC 58.402 50.000 2.63 0.00 0.00 4.70
17 18 3.698029 TTTGCAAGAAGACTGTTGAGC 57.302 42.857 0.00 0.00 0.00 4.26
18 19 6.069684 AGAATTTGCAAGAAGACTGTTGAG 57.930 37.500 0.00 0.00 0.00 3.02
19 20 7.750229 ATAGAATTTGCAAGAAGACTGTTGA 57.250 32.000 0.00 0.00 0.00 3.18
20 21 7.327761 CCAATAGAATTTGCAAGAAGACTGTTG 59.672 37.037 0.00 10.35 0.00 3.33
21 22 7.373493 CCAATAGAATTTGCAAGAAGACTGTT 58.627 34.615 0.00 0.00 0.00 3.16
22 23 6.571150 GCCAATAGAATTTGCAAGAAGACTGT 60.571 38.462 0.00 0.00 0.00 3.55
23 24 5.803967 GCCAATAGAATTTGCAAGAAGACTG 59.196 40.000 0.00 0.00 0.00 3.51
24 25 5.477984 TGCCAATAGAATTTGCAAGAAGACT 59.522 36.000 0.00 0.00 0.00 3.24
25 26 5.713025 TGCCAATAGAATTTGCAAGAAGAC 58.287 37.500 0.00 0.00 0.00 3.01
26 27 5.622914 GCTGCCAATAGAATTTGCAAGAAGA 60.623 40.000 0.00 0.00 0.00 2.87
27 28 4.565564 GCTGCCAATAGAATTTGCAAGAAG 59.434 41.667 0.00 0.00 0.00 2.85
28 29 4.221262 AGCTGCCAATAGAATTTGCAAGAA 59.779 37.500 0.00 0.00 0.00 2.52
29 30 3.765511 AGCTGCCAATAGAATTTGCAAGA 59.234 39.130 0.00 0.00 0.00 3.02
30 31 3.863424 CAGCTGCCAATAGAATTTGCAAG 59.137 43.478 0.00 0.00 0.00 4.01
31 32 3.368635 CCAGCTGCCAATAGAATTTGCAA 60.369 43.478 8.66 0.00 0.00 4.08
32 33 2.166870 CCAGCTGCCAATAGAATTTGCA 59.833 45.455 8.66 0.00 0.00 4.08
33 34 2.482490 CCCAGCTGCCAATAGAATTTGC 60.482 50.000 8.66 0.00 0.00 3.68
34 35 3.025978 TCCCAGCTGCCAATAGAATTTG 58.974 45.455 8.66 0.00 0.00 2.32
35 36 3.294214 CTCCCAGCTGCCAATAGAATTT 58.706 45.455 8.66 0.00 0.00 1.82
36 37 2.423947 CCTCCCAGCTGCCAATAGAATT 60.424 50.000 8.66 0.00 0.00 2.17
37 38 1.144503 CCTCCCAGCTGCCAATAGAAT 59.855 52.381 8.66 0.00 0.00 2.40
38 39 0.548031 CCTCCCAGCTGCCAATAGAA 59.452 55.000 8.66 0.00 0.00 2.10
39 40 0.326522 TCCTCCCAGCTGCCAATAGA 60.327 55.000 8.66 0.00 0.00 1.98
40 41 0.179034 GTCCTCCCAGCTGCCAATAG 60.179 60.000 8.66 0.20 0.00 1.73
41 42 0.621571 AGTCCTCCCAGCTGCCAATA 60.622 55.000 8.66 0.00 0.00 1.90
42 43 1.504275 AAGTCCTCCCAGCTGCCAAT 61.504 55.000 8.66 0.00 0.00 3.16
43 44 2.156098 AAGTCCTCCCAGCTGCCAA 61.156 57.895 8.66 0.00 0.00 4.52
44 45 2.530151 AAGTCCTCCCAGCTGCCA 60.530 61.111 8.66 0.00 0.00 4.92
45 46 2.045536 CAAGTCCTCCCAGCTGCC 60.046 66.667 8.66 0.00 0.00 4.85
46 47 2.045536 CCAAGTCCTCCCAGCTGC 60.046 66.667 8.66 0.00 0.00 5.25
47 48 0.035630 CTTCCAAGTCCTCCCAGCTG 60.036 60.000 6.78 6.78 0.00 4.24
48 49 0.178891 TCTTCCAAGTCCTCCCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
49 50 0.251634 CTCTTCCAAGTCCTCCCAGC 59.748 60.000 0.00 0.00 0.00 4.85
50 51 0.908198 CCTCTTCCAAGTCCTCCCAG 59.092 60.000 0.00 0.00 0.00 4.45
51 52 1.201429 GCCTCTTCCAAGTCCTCCCA 61.201 60.000 0.00 0.00 0.00 4.37
52 53 1.604915 GCCTCTTCCAAGTCCTCCC 59.395 63.158 0.00 0.00 0.00 4.30
53 54 0.912006 AGGCCTCTTCCAAGTCCTCC 60.912 60.000 0.00 0.00 0.00 4.30
54 55 0.988063 AAGGCCTCTTCCAAGTCCTC 59.012 55.000 5.23 0.00 0.00 3.71
55 56 0.988063 GAAGGCCTCTTCCAAGTCCT 59.012 55.000 5.23 0.00 42.61 3.85
56 57 3.560534 GAAGGCCTCTTCCAAGTCC 57.439 57.895 5.23 0.00 42.61 3.85
63 64 4.495690 AGTTATCAAGGAAGGCCTCTTC 57.504 45.455 5.23 0.00 46.28 2.87
64 65 4.324641 GGAAGTTATCAAGGAAGGCCTCTT 60.325 45.833 5.23 2.55 46.28 2.85
65 66 3.201045 GGAAGTTATCAAGGAAGGCCTCT 59.799 47.826 5.23 0.00 46.28 3.69
66 67 3.054361 TGGAAGTTATCAAGGAAGGCCTC 60.054 47.826 5.23 0.00 46.28 4.70
68 69 3.366052 TGGAAGTTATCAAGGAAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
69 70 4.972514 CTTGGAAGTTATCAAGGAAGGC 57.027 45.455 9.42 0.00 37.35 4.35
75 76 8.964476 ACATATGTACCTTGGAAGTTATCAAG 57.036 34.615 6.56 10.05 39.83 3.02
76 77 9.391006 GAACATATGTACCTTGGAAGTTATCAA 57.609 33.333 9.21 0.00 0.00 2.57
77 78 7.709182 CGAACATATGTACCTTGGAAGTTATCA 59.291 37.037 9.21 0.00 0.00 2.15
78 79 7.924412 TCGAACATATGTACCTTGGAAGTTATC 59.076 37.037 9.21 0.00 0.00 1.75
79 80 7.709613 GTCGAACATATGTACCTTGGAAGTTAT 59.290 37.037 9.21 0.00 0.00 1.89
80 81 7.037438 GTCGAACATATGTACCTTGGAAGTTA 58.963 38.462 9.21 0.00 0.00 2.24
81 82 5.873164 GTCGAACATATGTACCTTGGAAGTT 59.127 40.000 9.21 0.00 0.00 2.66
82 83 5.416947 GTCGAACATATGTACCTTGGAAGT 58.583 41.667 9.21 0.00 0.00 3.01
83 84 4.809426 GGTCGAACATATGTACCTTGGAAG 59.191 45.833 16.07 0.10 0.00 3.46
84 85 4.468510 AGGTCGAACATATGTACCTTGGAA 59.531 41.667 19.10 0.00 37.25 3.53
85 86 4.028131 AGGTCGAACATATGTACCTTGGA 58.972 43.478 19.10 4.77 37.25 3.53
86 87 4.402056 AGGTCGAACATATGTACCTTGG 57.598 45.455 19.10 2.61 37.25 3.61
87 88 4.974275 CGTAGGTCGAACATATGTACCTTG 59.026 45.833 26.37 18.13 40.89 3.61
88 89 5.179045 CGTAGGTCGAACATATGTACCTT 57.821 43.478 26.37 14.78 40.89 3.50
89 90 4.825546 CGTAGGTCGAACATATGTACCT 57.174 45.455 25.14 25.14 43.00 3.08
106 107 3.364062 CTTAAGTCATCAGCGTCCGTAG 58.636 50.000 0.00 0.00 0.00 3.51
107 108 2.098607 CCTTAAGTCATCAGCGTCCGTA 59.901 50.000 0.97 0.00 0.00 4.02
108 109 1.135083 CCTTAAGTCATCAGCGTCCGT 60.135 52.381 0.97 0.00 0.00 4.69
109 110 1.560923 CCTTAAGTCATCAGCGTCCG 58.439 55.000 0.97 0.00 0.00 4.79
110 111 1.291132 GCCTTAAGTCATCAGCGTCC 58.709 55.000 0.97 0.00 0.00 4.79
111 112 2.010145 TGCCTTAAGTCATCAGCGTC 57.990 50.000 0.97 0.00 0.00 5.19
112 113 2.698855 ATGCCTTAAGTCATCAGCGT 57.301 45.000 0.97 0.00 0.00 5.07
113 114 5.473931 ACTATATGCCTTAAGTCATCAGCG 58.526 41.667 1.54 0.00 0.00 5.18
114 115 6.931281 TGAACTATATGCCTTAAGTCATCAGC 59.069 38.462 1.54 0.00 0.00 4.26
115 116 8.768955 GTTGAACTATATGCCTTAAGTCATCAG 58.231 37.037 1.54 4.64 0.00 2.90
116 117 8.264347 TGTTGAACTATATGCCTTAAGTCATCA 58.736 33.333 1.54 0.00 0.00 3.07
117 118 8.662781 TGTTGAACTATATGCCTTAAGTCATC 57.337 34.615 1.54 0.00 0.00 2.92
118 119 8.267894 ACTGTTGAACTATATGCCTTAAGTCAT 58.732 33.333 4.19 4.19 0.00 3.06
119 120 7.620880 ACTGTTGAACTATATGCCTTAAGTCA 58.379 34.615 0.97 0.00 0.00 3.41
120 121 7.224949 GGACTGTTGAACTATATGCCTTAAGTC 59.775 40.741 0.97 0.00 0.00 3.01
121 122 7.048512 GGACTGTTGAACTATATGCCTTAAGT 58.951 38.462 0.97 0.00 0.00 2.24
122 123 6.201044 CGGACTGTTGAACTATATGCCTTAAG 59.799 42.308 0.00 0.00 0.00 1.85
123 124 6.046593 CGGACTGTTGAACTATATGCCTTAA 58.953 40.000 0.00 0.00 0.00 1.85
124 125 5.452776 CCGGACTGTTGAACTATATGCCTTA 60.453 44.000 0.00 0.00 0.00 2.69
125 126 4.442706 CGGACTGTTGAACTATATGCCTT 58.557 43.478 0.00 0.00 0.00 4.35
126 127 3.181465 CCGGACTGTTGAACTATATGCCT 60.181 47.826 0.00 0.00 0.00 4.75
127 128 3.131396 CCGGACTGTTGAACTATATGCC 58.869 50.000 0.00 0.00 0.00 4.40
128 129 4.051922 CTCCGGACTGTTGAACTATATGC 58.948 47.826 0.00 0.00 0.00 3.14
129 130 5.067936 ACTCTCCGGACTGTTGAACTATATG 59.932 44.000 0.00 0.00 0.00 1.78
130 131 5.202004 ACTCTCCGGACTGTTGAACTATAT 58.798 41.667 0.00 0.00 0.00 0.86
131 132 4.597004 ACTCTCCGGACTGTTGAACTATA 58.403 43.478 0.00 0.00 0.00 1.31
132 133 3.432378 ACTCTCCGGACTGTTGAACTAT 58.568 45.455 0.00 0.00 0.00 2.12
133 134 2.818432 GACTCTCCGGACTGTTGAACTA 59.182 50.000 0.00 0.00 0.00 2.24
134 135 1.614413 GACTCTCCGGACTGTTGAACT 59.386 52.381 0.00 0.00 0.00 3.01
135 136 1.336980 GGACTCTCCGGACTGTTGAAC 60.337 57.143 0.00 0.00 0.00 3.18
136 137 0.966920 GGACTCTCCGGACTGTTGAA 59.033 55.000 0.00 0.00 0.00 2.69
137 138 2.654802 GGACTCTCCGGACTGTTGA 58.345 57.895 0.00 0.00 0.00 3.18
147 148 0.253327 AATTTCCTGGCGGACTCTCC 59.747 55.000 0.00 0.00 39.60 3.71
148 149 1.208293 AGAATTTCCTGGCGGACTCTC 59.792 52.381 0.00 0.00 39.60 3.20
149 150 1.065854 CAGAATTTCCTGGCGGACTCT 60.066 52.381 0.00 0.00 39.60 3.24
150 151 1.373570 CAGAATTTCCTGGCGGACTC 58.626 55.000 0.00 0.00 39.60 3.36
151 152 0.035056 CCAGAATTTCCTGGCGGACT 60.035 55.000 0.00 0.00 46.16 3.85
152 153 2.482326 CCAGAATTTCCTGGCGGAC 58.518 57.895 0.00 0.00 46.16 4.79
158 159 5.428184 AGAACCTAGTCCAGAATTTCCTG 57.572 43.478 0.00 0.00 0.00 3.86
159 160 7.237887 AGTTAAGAACCTAGTCCAGAATTTCCT 59.762 37.037 0.00 0.00 0.00 3.36
160 161 7.395617 AGTTAAGAACCTAGTCCAGAATTTCC 58.604 38.462 0.00 0.00 0.00 3.13
161 162 9.939802 TTAGTTAAGAACCTAGTCCAGAATTTC 57.060 33.333 0.00 0.00 0.00 2.17
165 166 9.774413 CTTTTTAGTTAAGAACCTAGTCCAGAA 57.226 33.333 0.00 0.00 0.00 3.02
166 167 9.151177 TCTTTTTAGTTAAGAACCTAGTCCAGA 57.849 33.333 0.00 0.00 0.00 3.86
167 168 9.774413 TTCTTTTTAGTTAAGAACCTAGTCCAG 57.226 33.333 0.00 0.00 36.86 3.86
182 183 9.410556 CAATCGATGATTTGGTTCTTTTTAGTT 57.589 29.630 0.00 0.00 28.87 2.24
183 184 8.576442 ACAATCGATGATTTGGTTCTTTTTAGT 58.424 29.630 0.00 0.00 28.87 2.24
184 185 8.970691 ACAATCGATGATTTGGTTCTTTTTAG 57.029 30.769 0.00 0.00 28.87 1.85
185 186 8.792633 AGACAATCGATGATTTGGTTCTTTTTA 58.207 29.630 0.00 0.00 28.87 1.52
186 187 7.596248 CAGACAATCGATGATTTGGTTCTTTTT 59.404 33.333 0.00 0.00 28.87 1.94
187 188 7.086376 CAGACAATCGATGATTTGGTTCTTTT 58.914 34.615 0.00 0.00 28.87 2.27
188 189 6.349611 CCAGACAATCGATGATTTGGTTCTTT 60.350 38.462 0.00 0.00 28.87 2.52
189 190 5.124457 CCAGACAATCGATGATTTGGTTCTT 59.876 40.000 0.00 0.00 28.87 2.52
190 191 4.637534 CCAGACAATCGATGATTTGGTTCT 59.362 41.667 0.00 0.00 28.87 3.01
191 192 4.635765 TCCAGACAATCGATGATTTGGTTC 59.364 41.667 14.77 0.68 32.76 3.62
192 193 4.588899 TCCAGACAATCGATGATTTGGTT 58.411 39.130 14.77 0.00 32.76 3.67
193 194 4.220693 TCCAGACAATCGATGATTTGGT 57.779 40.909 14.77 2.06 32.76 3.67
194 195 4.556104 GCATCCAGACAATCGATGATTTGG 60.556 45.833 0.00 5.55 36.33 3.28
195 196 4.534168 GCATCCAGACAATCGATGATTTG 58.466 43.478 0.00 0.00 36.33 2.32
196 197 3.567164 GGCATCCAGACAATCGATGATTT 59.433 43.478 0.00 0.00 36.33 2.17
197 198 3.144506 GGCATCCAGACAATCGATGATT 58.855 45.455 0.00 0.00 36.33 2.57
198 199 2.775890 GGCATCCAGACAATCGATGAT 58.224 47.619 0.00 0.00 36.33 2.45
199 200 1.538849 CGGCATCCAGACAATCGATGA 60.539 52.381 0.00 0.00 36.33 2.92
200 201 0.863799 CGGCATCCAGACAATCGATG 59.136 55.000 0.00 0.00 37.13 3.84
201 202 0.752658 TCGGCATCCAGACAATCGAT 59.247 50.000 0.00 0.00 0.00 3.59
202 203 0.534873 TTCGGCATCCAGACAATCGA 59.465 50.000 0.00 0.00 0.00 3.59
203 204 0.933097 CTTCGGCATCCAGACAATCG 59.067 55.000 0.00 0.00 0.00 3.34
204 205 0.659957 GCTTCGGCATCCAGACAATC 59.340 55.000 0.00 0.00 41.33 2.67
205 206 0.749454 GGCTTCGGCATCCAGACAAT 60.749 55.000 0.00 0.00 43.96 2.71
206 207 1.377202 GGCTTCGGCATCCAGACAA 60.377 57.895 0.00 0.00 43.96 3.18
207 208 2.268920 GGCTTCGGCATCCAGACA 59.731 61.111 0.00 0.00 43.96 3.41
208 209 1.686325 TAGGGCTTCGGCATCCAGAC 61.686 60.000 0.00 0.00 43.96 3.51
209 210 1.382557 TAGGGCTTCGGCATCCAGA 60.383 57.895 0.00 0.00 43.96 3.86
210 211 1.070445 CTAGGGCTTCGGCATCCAG 59.930 63.158 0.00 0.00 43.96 3.86
211 212 3.106986 GCTAGGGCTTCGGCATCCA 62.107 63.158 0.00 0.00 43.96 3.41
212 213 2.281139 GCTAGGGCTTCGGCATCC 60.281 66.667 0.00 0.00 43.96 3.51
213 214 1.596477 CTGCTAGGGCTTCGGCATC 60.596 63.158 0.00 0.00 43.96 3.91
214 215 2.507944 CTGCTAGGGCTTCGGCAT 59.492 61.111 0.00 0.00 43.96 4.40
215 216 4.473520 GCTGCTAGGGCTTCGGCA 62.474 66.667 0.00 0.00 43.96 5.69
217 218 3.036429 AAGGCTGCTAGGGCTTCGG 62.036 63.158 0.00 0.00 46.76 4.30
218 219 2.586792 AAGGCTGCTAGGGCTTCG 59.413 61.111 0.00 0.00 46.76 3.79
221 222 0.322906 GTTTGAAGGCTGCTAGGGCT 60.323 55.000 0.00 0.00 44.08 5.19
222 223 0.609131 TGTTTGAAGGCTGCTAGGGC 60.609 55.000 0.00 0.00 39.26 5.19
223 224 1.168714 GTGTTTGAAGGCTGCTAGGG 58.831 55.000 0.00 0.00 0.00 3.53
224 225 1.808945 CTGTGTTTGAAGGCTGCTAGG 59.191 52.381 0.00 0.00 0.00 3.02
225 226 1.198637 GCTGTGTTTGAAGGCTGCTAG 59.801 52.381 0.00 0.00 0.00 3.42
226 227 1.238439 GCTGTGTTTGAAGGCTGCTA 58.762 50.000 0.00 0.00 0.00 3.49
227 228 0.752743 TGCTGTGTTTGAAGGCTGCT 60.753 50.000 0.00 0.00 0.00 4.24
228 229 0.316204 ATGCTGTGTTTGAAGGCTGC 59.684 50.000 0.00 0.00 0.00 5.25
229 230 1.068055 GGATGCTGTGTTTGAAGGCTG 60.068 52.381 0.00 0.00 0.00 4.85
230 231 1.251251 GGATGCTGTGTTTGAAGGCT 58.749 50.000 0.00 0.00 0.00 4.58
231 232 0.109597 CGGATGCTGTGTTTGAAGGC 60.110 55.000 0.00 0.00 0.00 4.35
232 233 0.109597 GCGGATGCTGTGTTTGAAGG 60.110 55.000 0.00 0.00 38.39 3.46
233 234 0.453282 CGCGGATGCTGTGTTTGAAG 60.453 55.000 0.00 0.00 39.65 3.02
234 235 0.882484 TCGCGGATGCTGTGTTTGAA 60.882 50.000 6.13 0.00 39.65 2.69
235 236 1.301322 TCGCGGATGCTGTGTTTGA 60.301 52.632 6.13 0.00 39.65 2.69
236 237 1.154413 GTCGCGGATGCTGTGTTTG 60.154 57.895 6.13 0.00 39.65 2.93
237 238 2.667318 CGTCGCGGATGCTGTGTTT 61.667 57.895 6.13 0.00 39.65 2.83
238 239 3.112075 CGTCGCGGATGCTGTGTT 61.112 61.111 6.13 0.00 39.65 3.32
239 240 2.835701 ATTCGTCGCGGATGCTGTGT 62.836 55.000 6.13 0.00 39.65 3.72
240 241 2.167219 ATTCGTCGCGGATGCTGTG 61.167 57.895 6.13 0.00 39.65 3.66
241 242 2.167219 CATTCGTCGCGGATGCTGT 61.167 57.895 6.13 0.00 36.03 4.40
242 243 2.622629 CATTCGTCGCGGATGCTG 59.377 61.111 6.13 0.00 36.03 4.41
243 244 2.586079 CCATTCGTCGCGGATGCT 60.586 61.111 6.13 0.00 41.08 3.79
244 245 4.299316 GCCATTCGTCGCGGATGC 62.299 66.667 6.13 6.95 41.08 3.91
245 246 2.586079 AGCCATTCGTCGCGGATG 60.586 61.111 6.13 11.95 41.97 3.51
246 247 2.279517 GAGCCATTCGTCGCGGAT 60.280 61.111 6.13 0.00 0.00 4.18
247 248 4.847516 CGAGCCATTCGTCGCGGA 62.848 66.667 6.13 0.00 44.27 5.54
261 262 4.838486 GTCGAGGTGGCGAGCGAG 62.838 72.222 0.00 0.00 41.49 5.03
265 266 2.432628 GTTGGTCGAGGTGGCGAG 60.433 66.667 0.00 0.00 41.49 5.03
266 267 2.313051 TTTGTTGGTCGAGGTGGCGA 62.313 55.000 0.00 0.00 38.07 5.54
267 268 1.440938 TTTTGTTGGTCGAGGTGGCG 61.441 55.000 0.00 0.00 0.00 5.69
268 269 0.310854 CTTTTGTTGGTCGAGGTGGC 59.689 55.000 0.00 0.00 0.00 5.01
269 270 0.310854 GCTTTTGTTGGTCGAGGTGG 59.689 55.000 0.00 0.00 0.00 4.61
270 271 0.310854 GGCTTTTGTTGGTCGAGGTG 59.689 55.000 0.00 0.00 0.00 4.00
271 272 0.106918 TGGCTTTTGTTGGTCGAGGT 60.107 50.000 0.00 0.00 0.00 3.85
272 273 1.028905 TTGGCTTTTGTTGGTCGAGG 58.971 50.000 0.00 0.00 0.00 4.63
273 274 2.861462 TTTGGCTTTTGTTGGTCGAG 57.139 45.000 0.00 0.00 0.00 4.04
274 275 3.491792 GGATTTTGGCTTTTGTTGGTCGA 60.492 43.478 0.00 0.00 0.00 4.20
275 276 2.799978 GGATTTTGGCTTTTGTTGGTCG 59.200 45.455 0.00 0.00 0.00 4.79
276 277 3.802866 TGGATTTTGGCTTTTGTTGGTC 58.197 40.909 0.00 0.00 0.00 4.02
277 278 3.922171 TGGATTTTGGCTTTTGTTGGT 57.078 38.095 0.00 0.00 0.00 3.67
278 279 3.502979 CCATGGATTTTGGCTTTTGTTGG 59.497 43.478 5.56 0.00 0.00 3.77
279 280 4.752661 CCATGGATTTTGGCTTTTGTTG 57.247 40.909 5.56 0.00 0.00 3.33
288 289 0.979187 AGGGCTGCCATGGATTTTGG 60.979 55.000 22.05 0.00 37.31 3.28
289 290 0.462789 GAGGGCTGCCATGGATTTTG 59.537 55.000 22.05 0.54 0.00 2.44
290 291 0.041535 TGAGGGCTGCCATGGATTTT 59.958 50.000 22.05 0.00 0.00 1.82
291 292 0.685458 GTGAGGGCTGCCATGGATTT 60.685 55.000 22.05 0.00 0.00 2.17
292 293 1.076485 GTGAGGGCTGCCATGGATT 60.076 57.895 22.05 0.00 0.00 3.01
293 294 2.599597 GTGAGGGCTGCCATGGAT 59.400 61.111 22.05 0.00 0.00 3.41
294 295 4.100084 CGTGAGGGCTGCCATGGA 62.100 66.667 22.05 0.00 0.00 3.41
306 307 2.456119 GGTTCATGAGCGCCGTGAG 61.456 63.158 16.70 0.45 41.44 3.51
307 308 2.434185 GGTTCATGAGCGCCGTGA 60.434 61.111 14.37 14.37 38.94 4.35
308 309 3.853330 CGGTTCATGAGCGCCGTG 61.853 66.667 20.30 7.82 42.83 4.94
314 315 1.689959 CACAAAAGCGGTTCATGAGC 58.310 50.000 16.89 0.04 0.00 4.26
315 316 1.689959 GCACAAAAGCGGTTCATGAG 58.310 50.000 16.89 11.46 0.00 2.90
316 317 3.863681 GCACAAAAGCGGTTCATGA 57.136 47.368 16.89 0.00 0.00 3.07
325 326 4.404654 CCTCGCCCGCACAAAAGC 62.405 66.667 0.00 0.00 0.00 3.51
326 327 2.668212 TCCTCGCCCGCACAAAAG 60.668 61.111 0.00 0.00 0.00 2.27
327 328 2.975799 GTCCTCGCCCGCACAAAA 60.976 61.111 0.00 0.00 0.00 2.44
328 329 4.243008 TGTCCTCGCCCGCACAAA 62.243 61.111 0.00 0.00 0.00 2.83
329 330 4.680237 CTGTCCTCGCCCGCACAA 62.680 66.667 0.00 0.00 0.00 3.33
331 332 4.681978 AACTGTCCTCGCCCGCAC 62.682 66.667 0.00 0.00 0.00 5.34
332 333 4.680237 CAACTGTCCTCGCCCGCA 62.680 66.667 0.00 0.00 0.00 5.69
334 335 3.530910 AACCAACTGTCCTCGCCCG 62.531 63.158 0.00 0.00 0.00 6.13
335 336 1.966451 CAACCAACTGTCCTCGCCC 60.966 63.158 0.00 0.00 0.00 6.13
336 337 1.966451 CCAACCAACTGTCCTCGCC 60.966 63.158 0.00 0.00 0.00 5.54
337 338 2.617274 GCCAACCAACTGTCCTCGC 61.617 63.158 0.00 0.00 0.00 5.03
338 339 1.966451 GGCCAACCAACTGTCCTCG 60.966 63.158 0.00 0.00 35.26 4.63
339 340 0.890996 CAGGCCAACCAACTGTCCTC 60.891 60.000 5.01 0.00 39.06 3.71
340 341 1.151450 CAGGCCAACCAACTGTCCT 59.849 57.895 5.01 0.00 39.06 3.85
341 342 0.109723 TACAGGCCAACCAACTGTCC 59.890 55.000 5.01 0.00 43.78 4.02
342 343 1.523758 CTACAGGCCAACCAACTGTC 58.476 55.000 5.01 0.00 43.78 3.51
343 344 0.537371 GCTACAGGCCAACCAACTGT 60.537 55.000 5.01 0.16 46.30 3.55
344 345 0.537143 TGCTACAGGCCAACCAACTG 60.537 55.000 5.01 0.00 40.92 3.16
345 346 0.184933 TTGCTACAGGCCAACCAACT 59.815 50.000 5.01 0.00 40.92 3.16
346 347 1.036707 TTTGCTACAGGCCAACCAAC 58.963 50.000 5.01 0.00 40.92 3.77
347 348 1.781786 TTTTGCTACAGGCCAACCAA 58.218 45.000 5.01 0.00 40.92 3.67
348 349 1.410882 GTTTTTGCTACAGGCCAACCA 59.589 47.619 5.01 0.00 40.92 3.67
349 350 1.410882 TGTTTTTGCTACAGGCCAACC 59.589 47.619 5.01 0.00 40.92 3.77
350 351 2.880963 TGTTTTTGCTACAGGCCAAC 57.119 45.000 5.01 0.00 40.92 3.77
351 352 3.726607 CATTGTTTTTGCTACAGGCCAA 58.273 40.909 5.01 0.00 40.92 4.52
352 353 2.547642 GCATTGTTTTTGCTACAGGCCA 60.548 45.455 5.01 0.00 40.92 5.36
353 354 2.068519 GCATTGTTTTTGCTACAGGCC 58.931 47.619 0.00 0.00 40.92 5.19
354 355 2.753296 TGCATTGTTTTTGCTACAGGC 58.247 42.857 0.00 0.00 40.77 4.85
355 356 3.184986 GCTTGCATTGTTTTTGCTACAGG 59.815 43.478 0.00 0.00 40.77 4.00
356 357 3.121261 CGCTTGCATTGTTTTTGCTACAG 60.121 43.478 0.00 0.00 40.77 2.74
357 358 2.793790 CGCTTGCATTGTTTTTGCTACA 59.206 40.909 0.00 0.00 40.77 2.74
358 359 3.049206 TCGCTTGCATTGTTTTTGCTAC 58.951 40.909 0.00 0.00 40.77 3.58
359 360 3.049206 GTCGCTTGCATTGTTTTTGCTA 58.951 40.909 0.00 0.00 40.77 3.49
360 361 1.860326 GTCGCTTGCATTGTTTTTGCT 59.140 42.857 0.00 0.00 40.77 3.91
361 362 1.395820 CGTCGCTTGCATTGTTTTTGC 60.396 47.619 0.00 0.00 40.55 3.68
362 363 1.395820 GCGTCGCTTGCATTGTTTTTG 60.396 47.619 10.68 0.00 0.00 2.44
363 364 0.852136 GCGTCGCTTGCATTGTTTTT 59.148 45.000 10.68 0.00 0.00 1.94
364 365 0.939106 GGCGTCGCTTGCATTGTTTT 60.939 50.000 18.11 0.00 0.00 2.43
365 366 1.371635 GGCGTCGCTTGCATTGTTT 60.372 52.632 18.11 0.00 0.00 2.83
366 367 2.255252 GGCGTCGCTTGCATTGTT 59.745 55.556 18.11 0.00 0.00 2.83
367 368 4.088762 CGGCGTCGCTTGCATTGT 62.089 61.111 18.11 0.00 0.00 2.71
368 369 4.817063 CCGGCGTCGCTTGCATTG 62.817 66.667 18.11 0.00 34.56 2.82
378 379 2.862674 TAAAGATGGGTGCCGGCGTC 62.863 60.000 23.90 17.32 0.00 5.19
379 380 2.265467 ATAAAGATGGGTGCCGGCGT 62.265 55.000 23.90 4.72 0.00 5.68
380 381 1.507141 GATAAAGATGGGTGCCGGCG 61.507 60.000 23.90 0.00 0.00 6.46
381 382 0.179018 AGATAAAGATGGGTGCCGGC 60.179 55.000 22.73 22.73 0.00 6.13
382 383 2.348411 AAGATAAAGATGGGTGCCGG 57.652 50.000 0.00 0.00 0.00 6.13
383 384 3.564225 GGTAAAGATAAAGATGGGTGCCG 59.436 47.826 0.00 0.00 0.00 5.69
384 385 4.793201 AGGTAAAGATAAAGATGGGTGCC 58.207 43.478 0.00 0.00 0.00 5.01
385 386 5.685728 AGAGGTAAAGATAAAGATGGGTGC 58.314 41.667 0.00 0.00 0.00 5.01
386 387 9.110502 GTAAAGAGGTAAAGATAAAGATGGGTG 57.889 37.037 0.00 0.00 0.00 4.61
387 388 8.272889 GGTAAAGAGGTAAAGATAAAGATGGGT 58.727 37.037 0.00 0.00 0.00 4.51
388 389 8.495260 AGGTAAAGAGGTAAAGATAAAGATGGG 58.505 37.037 0.00 0.00 0.00 4.00
402 403 8.699130 GCTGGTTTATTAGTAGGTAAAGAGGTA 58.301 37.037 0.00 0.00 0.00 3.08
403 404 7.563020 GCTGGTTTATTAGTAGGTAAAGAGGT 58.437 38.462 0.00 0.00 0.00 3.85
404 405 6.700520 CGCTGGTTTATTAGTAGGTAAAGAGG 59.299 42.308 0.00 0.00 0.00 3.69
405 406 7.486647 TCGCTGGTTTATTAGTAGGTAAAGAG 58.513 38.462 0.00 0.00 0.00 2.85
442 443 5.240623 TCTGCAAAATTTCCAATGACGTACT 59.759 36.000 0.00 0.00 0.00 2.73
484 486 6.673839 AAAAAGGATTCCGGGTTGAATTTA 57.326 33.333 0.00 0.00 35.15 1.40
891 910 2.046314 CGCCGGAGAACCAACCAT 60.046 61.111 5.05 0.00 35.59 3.55
953 973 1.271707 CCGAGTCCCTCCCTAGATCTC 60.272 61.905 0.00 0.00 0.00 2.75
1196 1216 7.176690 GGTCCTTTTTCAAATCCATACAGAGAA 59.823 37.037 0.00 0.00 0.00 2.87
1604 1625 5.009410 CCTGAAGCAAGACTTTTTCTCATGT 59.991 40.000 9.46 0.00 39.29 3.21
2080 2113 6.990939 GGGAGTATTATTTAGTGTCAGGTTCC 59.009 42.308 0.00 0.00 0.00 3.62
2147 2180 5.009410 CAGCCAACAACTGAAGAAGAGAAAT 59.991 40.000 0.00 0.00 37.32 2.17
2219 2252 8.961092 CATGTCACAGAACAAAATTAGAAAGTG 58.039 33.333 0.00 0.00 31.81 3.16
2237 2270 1.755959 AGGCTGCAAAAACATGTCACA 59.244 42.857 0.00 0.00 0.00 3.58
2425 2458 3.600388 ACCAGAAAATAAGAGTGCTCGG 58.400 45.455 0.00 0.00 34.09 4.63
3182 3228 1.068610 GCTACGGCAAAACAATGCTCA 60.069 47.619 0.00 0.00 45.68 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.