Multiple sequence alignment - TraesCS6A01G358300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G358300 chr6A 100.000 4213 0 0 1 4213 588412343 588408131 0.000000e+00 7781.0
1 TraesCS6A01G358300 chr6A 85.612 834 108 10 2106 2932 588353983 588353155 0.000000e+00 865.0
2 TraesCS6A01G358300 chr6A 87.539 642 77 3 2314 2954 588428794 588428155 0.000000e+00 739.0
3 TraesCS6A01G358300 chr6A 81.798 456 79 4 1649 2102 588354467 588354014 3.070000e-101 379.0
4 TraesCS6A01G358300 chr6A 90.909 209 19 0 2103 2311 588429263 588429055 8.920000e-72 281.0
5 TraesCS6A01G358300 chr6A 77.056 231 38 7 1267 1487 588355028 588354803 7.400000e-23 119.0
6 TraesCS6A01G358300 chr6A 100.000 41 0 0 4173 4213 407379039 407378999 4.520000e-10 76.8
7 TraesCS6A01G358300 chr6A 88.136 59 4 2 4154 4212 492245174 492245229 2.720000e-07 67.6
8 TraesCS6A01G358300 chr6D 93.532 3015 131 23 1221 4179 440210938 440207932 0.000000e+00 4429.0
9 TraesCS6A01G358300 chr6D 85.944 996 104 19 1985 2948 440220221 440219230 0.000000e+00 1031.0
10 TraesCS6A01G358300 chr6D 80.943 1039 151 22 1376 2370 440015287 440014252 0.000000e+00 778.0
11 TraesCS6A01G358300 chr6D 80.769 988 144 22 1424 2367 439922051 439921066 0.000000e+00 730.0
12 TraesCS6A01G358300 chr6D 79.605 760 113 18 1655 2375 466544310 466545066 1.350000e-139 507.0
13 TraesCS6A01G358300 chr6D 82.270 141 19 3 1249 1389 440015531 440015397 2.660000e-22 117.0
14 TraesCS6A01G358300 chr6D 89.888 89 8 1 1024 1111 466552769 466552681 3.440000e-21 113.0
15 TraesCS6A01G358300 chr6D 94.203 69 4 0 1321 1389 440221230 440221162 5.760000e-19 106.0
16 TraesCS6A01G358300 chr6D 83.333 96 12 4 2961 3053 283795855 283795761 7.510000e-13 86.1
17 TraesCS6A01G358300 chr6D 84.932 73 9 2 2962 3032 451177120 451177192 5.840000e-09 73.1
18 TraesCS6A01G358300 chr6D 90.566 53 5 0 1059 1111 466541792 466541844 2.100000e-08 71.3
19 TraesCS6A01G358300 chr6B 90.031 1595 113 15 1376 2940 665036894 665035316 0.000000e+00 2023.0
20 TraesCS6A01G358300 chr6B 86.870 1211 120 17 1637 2814 665417277 665416073 0.000000e+00 1319.0
21 TraesCS6A01G358300 chr6B 82.665 1321 175 35 1649 2932 665131989 665130686 0.000000e+00 1122.0
22 TraesCS6A01G358300 chr6B 81.250 1312 201 30 1658 2932 665425330 665424027 0.000000e+00 1018.0
23 TraesCS6A01G358300 chr6B 83.154 742 109 8 1376 2102 665162322 665161582 0.000000e+00 664.0
24 TraesCS6A01G358300 chr6B 80.854 773 113 18 1637 2376 95237354 95236584 3.650000e-160 575.0
25 TraesCS6A01G358300 chr6B 90.698 258 23 1 1376 1633 665417579 665417323 4.030000e-90 342.0
26 TraesCS6A01G358300 chr6B 79.621 211 33 4 1182 1389 665162660 665162457 4.390000e-30 143.0
27 TraesCS6A01G358300 chr6B 77.489 231 37 7 1267 1487 665132550 665132325 1.590000e-24 124.0
28 TraesCS6A01G358300 chr6B 76.720 189 32 11 1304 1487 665425860 665425679 1.250000e-15 95.3
29 TraesCS6A01G358300 chr6B 83.117 77 9 4 2964 3038 705558778 705558852 2.720000e-07 67.6
30 TraesCS6A01G358300 chr4D 89.950 597 51 7 1 591 203645958 203645365 0.000000e+00 761.0
31 TraesCS6A01G358300 chr4D 84.322 236 31 3 3945 4179 341695111 341695341 4.240000e-55 226.0
32 TraesCS6A01G358300 chr4D 88.312 77 5 4 2961 3034 418772414 418772489 5.800000e-14 89.8
33 TraesCS6A01G358300 chr4D 95.745 47 1 1 4167 4213 395435805 395435850 1.620000e-09 75.0
34 TraesCS6A01G358300 chr2D 87.383 642 62 9 1 631 108630425 108629792 0.000000e+00 719.0
35 TraesCS6A01G358300 chr2D 86.371 653 62 13 6 639 388478448 388477804 0.000000e+00 688.0
36 TraesCS6A01G358300 chr2D 85.144 626 75 9 14 627 98710563 98709944 3.580000e-175 625.0
37 TraesCS6A01G358300 chr2D 82.759 87 11 4 2961 3044 81298283 81298198 1.620000e-09 75.0
38 TraesCS6A01G358300 chr7D 87.175 616 66 4 20 624 109517079 109516466 0.000000e+00 688.0
39 TraesCS6A01G358300 chr5D 84.923 650 76 16 1 635 30593124 30593766 4.590000e-179 638.0
40 TraesCS6A01G358300 chr5D 86.129 310 35 5 3871 4179 483370421 483370723 1.130000e-85 327.0
41 TraesCS6A01G358300 chr5D 86.695 233 25 3 3948 4179 483226880 483227107 1.940000e-63 254.0
42 TraesCS6A01G358300 chr2B 85.233 623 74 8 14 624 246954892 246954276 3.580000e-175 625.0
43 TraesCS6A01G358300 chr2B 83.981 618 83 7 14 618 150341004 150340390 2.820000e-161 579.0
44 TraesCS6A01G358300 chr2B 82.314 458 80 1 1651 2108 246575044 246575500 3.050000e-106 396.0
45 TraesCS6A01G358300 chr2B 89.474 57 2 4 4158 4213 79559383 79559436 7.560000e-08 69.4
46 TraesCS6A01G358300 chr5B 85.968 563 73 6 2389 2948 330120739 330121298 7.800000e-167 597.0
47 TraesCS6A01G358300 chr5B 85.943 562 75 4 2389 2948 330430341 330430900 7.800000e-167 597.0
48 TraesCS6A01G358300 chr5B 86.774 310 33 5 3871 4179 593943265 593943567 5.220000e-89 339.0
49 TraesCS6A01G358300 chr5B 87.124 233 24 3 3948 4179 593658391 593658618 4.180000e-65 259.0
50 TraesCS6A01G358300 chr5B 92.727 55 3 1 2963 3016 419399544 419399598 1.260000e-10 78.7
51 TraesCS6A01G358300 chr5B 83.529 85 9 5 2957 3038 411035011 411034929 1.620000e-09 75.0
52 TraesCS6A01G358300 chr7B 85.362 567 74 5 14 574 104218992 104219555 2.820000e-161 579.0
53 TraesCS6A01G358300 chr4A 79.651 688 101 19 1652 2306 661022179 661021498 3.840000e-125 459.0
54 TraesCS6A01G358300 chr4A 81.538 325 52 7 1319 1640 661022555 661022236 1.160000e-65 261.0
55 TraesCS6A01G358300 chr4A 93.878 49 1 2 4167 4213 556286503 556286551 5.840000e-09 73.1
56 TraesCS6A01G358300 chr4A 87.931 58 5 2 4158 4213 136469777 136469720 2.720000e-07 67.6
57 TraesCS6A01G358300 chr4A 87.931 58 5 2 4158 4213 136490020 136489963 2.720000e-07 67.6
58 TraesCS6A01G358300 chr5A 85.806 310 36 5 3871 4179 604310670 604310972 5.250000e-84 322.0
59 TraesCS6A01G358300 chr5A 85.837 233 27 3 3948 4179 603793421 603793648 4.210000e-60 243.0
60 TraesCS6A01G358300 chr5A 97.727 44 1 0 4170 4213 510046892 510046935 4.520000e-10 76.8
61 TraesCS6A01G358300 chr2A 76.872 454 80 19 1172 1618 639694514 639694949 2.530000e-57 233.0
62 TraesCS6A01G358300 chr4B 84.322 236 31 3 3945 4179 423775210 423775440 4.240000e-55 226.0
63 TraesCS6A01G358300 chr4B 82.759 87 13 2 2962 3046 488694967 488694881 4.520000e-10 76.8
64 TraesCS6A01G358300 chr3D 80.428 327 30 16 1304 1618 515706382 515706686 7.090000e-53 219.0
65 TraesCS6A01G358300 chr3B 81.154 260 40 7 2111 2364 678210526 678210782 2.570000e-47 200.0
66 TraesCS6A01G358300 chr7A 85.938 64 4 4 4152 4213 475258448 475258388 3.520000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G358300 chr6A 588408131 588412343 4212 True 7781.000000 7781 100.000000 1 4213 1 chr6A.!!$R2 4212
1 TraesCS6A01G358300 chr6A 588428155 588429263 1108 True 510.000000 739 89.224000 2103 2954 2 chr6A.!!$R4 851
2 TraesCS6A01G358300 chr6A 588353155 588355028 1873 True 454.333333 865 81.488667 1267 2932 3 chr6A.!!$R3 1665
3 TraesCS6A01G358300 chr6D 440207932 440210938 3006 True 4429.000000 4429 93.532000 1221 4179 1 chr6D.!!$R3 2958
4 TraesCS6A01G358300 chr6D 439921066 439922051 985 True 730.000000 730 80.769000 1424 2367 1 chr6D.!!$R2 943
5 TraesCS6A01G358300 chr6D 440219230 440221230 2000 True 568.500000 1031 90.073500 1321 2948 2 chr6D.!!$R6 1627
6 TraesCS6A01G358300 chr6D 440014252 440015531 1279 True 447.500000 778 81.606500 1249 2370 2 chr6D.!!$R5 1121
7 TraesCS6A01G358300 chr6D 466541792 466545066 3274 False 289.150000 507 85.085500 1059 2375 2 chr6D.!!$F2 1316
8 TraesCS6A01G358300 chr6B 665035316 665036894 1578 True 2023.000000 2023 90.031000 1376 2940 1 chr6B.!!$R2 1564
9 TraesCS6A01G358300 chr6B 665416073 665417579 1506 True 830.500000 1319 88.784000 1376 2814 2 chr6B.!!$R5 1438
10 TraesCS6A01G358300 chr6B 665130686 665132550 1864 True 623.000000 1122 80.077000 1267 2932 2 chr6B.!!$R3 1665
11 TraesCS6A01G358300 chr6B 95236584 95237354 770 True 575.000000 575 80.854000 1637 2376 1 chr6B.!!$R1 739
12 TraesCS6A01G358300 chr6B 665424027 665425860 1833 True 556.650000 1018 78.985000 1304 2932 2 chr6B.!!$R6 1628
13 TraesCS6A01G358300 chr6B 665161582 665162660 1078 True 403.500000 664 81.387500 1182 2102 2 chr6B.!!$R4 920
14 TraesCS6A01G358300 chr4D 203645365 203645958 593 True 761.000000 761 89.950000 1 591 1 chr4D.!!$R1 590
15 TraesCS6A01G358300 chr2D 108629792 108630425 633 True 719.000000 719 87.383000 1 631 1 chr2D.!!$R3 630
16 TraesCS6A01G358300 chr2D 388477804 388478448 644 True 688.000000 688 86.371000 6 639 1 chr2D.!!$R4 633
17 TraesCS6A01G358300 chr2D 98709944 98710563 619 True 625.000000 625 85.144000 14 627 1 chr2D.!!$R2 613
18 TraesCS6A01G358300 chr7D 109516466 109517079 613 True 688.000000 688 87.175000 20 624 1 chr7D.!!$R1 604
19 TraesCS6A01G358300 chr5D 30593124 30593766 642 False 638.000000 638 84.923000 1 635 1 chr5D.!!$F1 634
20 TraesCS6A01G358300 chr2B 246954276 246954892 616 True 625.000000 625 85.233000 14 624 1 chr2B.!!$R2 610
21 TraesCS6A01G358300 chr2B 150340390 150341004 614 True 579.000000 579 83.981000 14 618 1 chr2B.!!$R1 604
22 TraesCS6A01G358300 chr5B 330120739 330121298 559 False 597.000000 597 85.968000 2389 2948 1 chr5B.!!$F1 559
23 TraesCS6A01G358300 chr5B 330430341 330430900 559 False 597.000000 597 85.943000 2389 2948 1 chr5B.!!$F2 559
24 TraesCS6A01G358300 chr7B 104218992 104219555 563 False 579.000000 579 85.362000 14 574 1 chr7B.!!$F1 560
25 TraesCS6A01G358300 chr4A 661021498 661022555 1057 True 360.000000 459 80.594500 1319 2306 2 chr4A.!!$R3 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 141 0.103572 GCATTGAAGAATGGCGGCAT 59.896 50.0 20.18 20.18 39.62 4.40 F
697 721 0.107459 TGTTGCCCAAAAACTTGGCC 60.107 50.0 0.00 0.00 44.72 5.36 F
1176 1200 0.033405 ACGATCCTCCTCCCTTTCGA 60.033 55.0 0.00 0.00 0.00 3.71 F
2919 5425 0.250124 CGGGTGCTGTGGTTCACTTA 60.250 55.0 0.00 0.00 35.11 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1041 1065 0.107214 CGCCAGATTGCTTCCCCTAA 60.107 55.000 0.00 0.0 0.00 2.69 R
2542 5043 0.182299 TCCCACACTGTGATGCACAA 59.818 50.000 15.86 0.0 44.08 3.33 R
3164 5671 2.494471 CAGGATGCATCACAAACACCAT 59.506 45.455 27.25 0.0 0.00 3.55 R
3963 6475 0.521735 CAAAGTTACCAAGGCTCCGC 59.478 55.000 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 141 0.103572 GCATTGAAGAATGGCGGCAT 59.896 50.000 20.18 20.18 39.62 4.40
185 193 4.927782 TTGCAGCGGCGACCTTGT 62.928 61.111 12.98 0.00 45.35 3.16
186 194 4.927782 TGCAGCGGCGACCTTGTT 62.928 61.111 12.98 0.00 45.35 2.83
237 246 0.536460 TTTTGGGGGTGCTTCTCGAC 60.536 55.000 0.00 0.00 0.00 4.20
363 376 3.394274 TCCAGGGTGAAAACTCAAGATCA 59.606 43.478 0.00 0.00 0.00 2.92
403 416 2.791158 CGCGTGTGCATTATTTCCTTCC 60.791 50.000 0.00 0.00 42.97 3.46
437 451 5.642063 CGCTTTTGGAGAACCTCTTATGTAA 59.358 40.000 0.00 0.00 37.04 2.41
447 461 3.387050 ACCTCTTATGTAATCCGGGTGTC 59.613 47.826 0.00 0.00 0.00 3.67
501 516 1.136690 GTGTTTCATCACTGCGACGA 58.863 50.000 0.00 0.00 35.68 4.20
559 577 4.130286 TGTTTTTGGGTGTGTTCATTCC 57.870 40.909 0.00 0.00 0.00 3.01
575 593 3.873361 TCATTCCTGATGTCTTTCGATGC 59.127 43.478 0.00 0.00 37.06 3.91
579 597 3.450817 TCCTGATGTCTTTCGATGCCTTA 59.549 43.478 0.00 0.00 0.00 2.69
587 611 4.035558 GTCTTTCGATGCCTTATTGATGCA 59.964 41.667 0.00 0.00 39.68 3.96
670 694 9.495572 CTAAATAAATTTACTGCCCTAGAGAGG 57.504 37.037 0.00 0.00 43.33 3.69
676 700 2.816012 GCCCTAGAGAGGCGAACC 59.184 66.667 0.00 0.00 42.21 3.62
677 701 2.058595 GCCCTAGAGAGGCGAACCA 61.059 63.158 0.00 0.00 42.21 3.67
678 702 1.403687 GCCCTAGAGAGGCGAACCAT 61.404 60.000 0.00 0.00 42.21 3.55
679 703 0.390860 CCCTAGAGAGGCGAACCATG 59.609 60.000 0.00 0.00 42.21 3.66
680 704 1.115467 CCTAGAGAGGCGAACCATGT 58.885 55.000 0.00 0.00 39.06 3.21
681 705 1.482593 CCTAGAGAGGCGAACCATGTT 59.517 52.381 0.00 0.00 39.06 2.71
682 706 2.544685 CTAGAGAGGCGAACCATGTTG 58.455 52.381 0.00 0.00 39.06 3.33
683 707 0.674895 AGAGAGGCGAACCATGTTGC 60.675 55.000 0.00 0.00 39.06 4.17
686 710 2.988684 GGCGAACCATGTTGCCCA 60.989 61.111 3.59 0.00 41.70 5.36
687 711 2.569354 GGCGAACCATGTTGCCCAA 61.569 57.895 3.59 0.00 41.70 4.12
688 712 1.365633 GCGAACCATGTTGCCCAAA 59.634 52.632 0.00 0.00 0.00 3.28
689 713 0.249657 GCGAACCATGTTGCCCAAAA 60.250 50.000 0.00 0.00 0.00 2.44
690 714 1.808133 GCGAACCATGTTGCCCAAAAA 60.808 47.619 0.00 0.00 0.00 1.94
691 715 1.864082 CGAACCATGTTGCCCAAAAAC 59.136 47.619 0.00 0.00 0.00 2.43
692 716 2.482839 CGAACCATGTTGCCCAAAAACT 60.483 45.455 0.00 0.00 0.00 2.66
693 717 3.540617 GAACCATGTTGCCCAAAAACTT 58.459 40.909 0.00 0.00 0.00 2.66
694 718 2.916640 ACCATGTTGCCCAAAAACTTG 58.083 42.857 0.00 0.00 34.27 3.16
695 719 2.220313 CCATGTTGCCCAAAAACTTGG 58.780 47.619 6.78 6.78 42.75 3.61
696 720 1.603326 CATGTTGCCCAAAAACTTGGC 59.397 47.619 0.00 0.00 45.56 4.52
697 721 0.107459 TGTTGCCCAAAAACTTGGCC 60.107 50.000 0.00 0.00 44.72 5.36
698 722 0.107459 GTTGCCCAAAAACTTGGCCA 60.107 50.000 0.00 0.00 44.72 5.36
699 723 0.842635 TTGCCCAAAAACTTGGCCAT 59.157 45.000 6.09 0.00 44.72 4.40
700 724 0.108207 TGCCCAAAAACTTGGCCATG 59.892 50.000 16.76 16.76 44.72 3.66
701 725 0.108396 GCCCAAAAACTTGGCCATGT 59.892 50.000 18.18 18.18 40.74 3.21
702 726 1.476652 GCCCAAAAACTTGGCCATGTT 60.477 47.619 26.80 26.80 40.74 2.71
703 727 2.224402 GCCCAAAAACTTGGCCATGTTA 60.224 45.455 30.87 6.05 40.74 2.41
704 728 3.398406 CCCAAAAACTTGGCCATGTTAC 58.602 45.455 30.87 0.00 40.74 2.50
705 729 3.056304 CCAAAAACTTGGCCATGTTACG 58.944 45.455 30.87 22.22 35.00 3.18
706 730 3.056304 CAAAAACTTGGCCATGTTACGG 58.944 45.455 30.87 20.51 0.00 4.02
707 731 1.989706 AAACTTGGCCATGTTACGGT 58.010 45.000 30.87 16.68 0.00 4.83
708 732 1.989706 AACTTGGCCATGTTACGGTT 58.010 45.000 29.98 10.00 0.00 4.44
709 733 1.989706 ACTTGGCCATGTTACGGTTT 58.010 45.000 18.18 0.00 0.00 3.27
710 734 2.312390 ACTTGGCCATGTTACGGTTTT 58.688 42.857 18.18 0.00 0.00 2.43
711 735 2.696187 ACTTGGCCATGTTACGGTTTTT 59.304 40.909 18.18 0.00 0.00 1.94
781 805 5.741388 AAAAATGCTAGCATACGAGGAAG 57.259 39.130 29.77 0.00 35.31 3.46
782 806 2.447244 ATGCTAGCATACGAGGAAGC 57.553 50.000 28.62 0.00 34.49 3.86
783 807 1.111277 TGCTAGCATACGAGGAAGCA 58.889 50.000 14.93 0.00 37.62 3.91
784 808 1.688735 TGCTAGCATACGAGGAAGCAT 59.311 47.619 14.93 0.00 35.20 3.79
785 809 2.890945 TGCTAGCATACGAGGAAGCATA 59.109 45.455 14.93 0.00 35.20 3.14
786 810 3.320826 TGCTAGCATACGAGGAAGCATAA 59.679 43.478 14.93 0.00 35.20 1.90
787 811 3.675698 GCTAGCATACGAGGAAGCATAAC 59.324 47.826 10.63 0.00 0.00 1.89
788 812 3.113260 AGCATACGAGGAAGCATAACC 57.887 47.619 0.00 0.00 0.00 2.85
789 813 1.792949 GCATACGAGGAAGCATAACCG 59.207 52.381 0.00 0.00 0.00 4.44
790 814 2.545113 GCATACGAGGAAGCATAACCGA 60.545 50.000 0.00 0.00 0.00 4.69
791 815 3.713288 CATACGAGGAAGCATAACCGAA 58.287 45.455 0.00 0.00 0.00 4.30
792 816 2.754946 ACGAGGAAGCATAACCGAAA 57.245 45.000 0.00 0.00 0.00 3.46
793 817 3.048337 ACGAGGAAGCATAACCGAAAA 57.952 42.857 0.00 0.00 0.00 2.29
794 818 3.404899 ACGAGGAAGCATAACCGAAAAA 58.595 40.909 0.00 0.00 0.00 1.94
795 819 3.435671 ACGAGGAAGCATAACCGAAAAAG 59.564 43.478 0.00 0.00 0.00 2.27
796 820 3.682858 CGAGGAAGCATAACCGAAAAAGA 59.317 43.478 0.00 0.00 0.00 2.52
797 821 4.153475 CGAGGAAGCATAACCGAAAAAGAA 59.847 41.667 0.00 0.00 0.00 2.52
798 822 5.334569 CGAGGAAGCATAACCGAAAAAGAAA 60.335 40.000 0.00 0.00 0.00 2.52
799 823 6.399639 AGGAAGCATAACCGAAAAAGAAAA 57.600 33.333 0.00 0.00 0.00 2.29
800 824 6.213677 AGGAAGCATAACCGAAAAAGAAAAC 58.786 36.000 0.00 0.00 0.00 2.43
801 825 6.040504 AGGAAGCATAACCGAAAAAGAAAACT 59.959 34.615 0.00 0.00 0.00 2.66
802 826 6.362551 GGAAGCATAACCGAAAAAGAAAACTC 59.637 38.462 0.00 0.00 0.00 3.01
803 827 5.449304 AGCATAACCGAAAAAGAAAACTCG 58.551 37.500 0.00 0.00 0.00 4.18
804 828 5.008316 AGCATAACCGAAAAAGAAAACTCGT 59.992 36.000 0.00 0.00 0.00 4.18
805 829 5.115021 GCATAACCGAAAAAGAAAACTCGTG 59.885 40.000 0.00 0.00 0.00 4.35
806 830 3.060978 ACCGAAAAAGAAAACTCGTGC 57.939 42.857 0.00 0.00 0.00 5.34
807 831 2.034076 CCGAAAAAGAAAACTCGTGCG 58.966 47.619 0.00 0.00 0.00 5.34
808 832 2.034076 CGAAAAAGAAAACTCGTGCGG 58.966 47.619 0.00 0.00 0.00 5.69
809 833 2.285950 CGAAAAAGAAAACTCGTGCGGA 60.286 45.455 0.00 0.00 0.00 5.54
810 834 3.606153 CGAAAAAGAAAACTCGTGCGGAT 60.606 43.478 0.00 0.00 0.00 4.18
811 835 3.537793 AAAAGAAAACTCGTGCGGATC 57.462 42.857 0.00 0.00 0.00 3.36
812 836 2.457366 AAGAAAACTCGTGCGGATCT 57.543 45.000 0.00 0.00 0.00 2.75
813 837 3.587797 AAGAAAACTCGTGCGGATCTA 57.412 42.857 0.00 0.00 0.00 1.98
814 838 3.802948 AGAAAACTCGTGCGGATCTAT 57.197 42.857 0.00 0.00 0.00 1.98
815 839 3.707793 AGAAAACTCGTGCGGATCTATC 58.292 45.455 0.00 0.00 0.00 2.08
816 840 2.510768 AAACTCGTGCGGATCTATCC 57.489 50.000 0.00 0.00 43.65 2.59
825 849 1.587054 GGATCTATCCACTCGGCCG 59.413 63.158 22.12 22.12 46.38 6.13
826 850 1.080434 GATCTATCCACTCGGCCGC 60.080 63.158 23.51 0.00 0.00 6.53
827 851 1.806461 GATCTATCCACTCGGCCGCA 61.806 60.000 23.51 8.85 0.00 5.69
828 852 1.810606 ATCTATCCACTCGGCCGCAG 61.811 60.000 23.51 20.72 0.00 5.18
852 876 4.426313 CCCCTTCGGCAACCCCTC 62.426 72.222 0.00 0.00 0.00 4.30
853 877 4.426313 CCCTTCGGCAACCCCTCC 62.426 72.222 0.00 0.00 0.00 4.30
854 878 4.426313 CCTTCGGCAACCCCTCCC 62.426 72.222 0.00 0.00 0.00 4.30
855 879 4.778143 CTTCGGCAACCCCTCCCG 62.778 72.222 0.00 0.00 43.21 5.14
861 885 4.410400 CAACCCCTCCCGCTCCAC 62.410 72.222 0.00 0.00 0.00 4.02
880 904 3.626924 GCCGTCCACCACCACTCT 61.627 66.667 0.00 0.00 0.00 3.24
881 905 2.280552 GCCGTCCACCACCACTCTA 61.281 63.158 0.00 0.00 0.00 2.43
882 906 1.590147 CCGTCCACCACCACTCTAC 59.410 63.158 0.00 0.00 0.00 2.59
883 907 1.590147 CGTCCACCACCACTCTACC 59.410 63.158 0.00 0.00 0.00 3.18
884 908 1.885163 CGTCCACCACCACTCTACCC 61.885 65.000 0.00 0.00 0.00 3.69
885 909 1.229400 TCCACCACCACTCTACCCC 60.229 63.158 0.00 0.00 0.00 4.95
886 910 2.656069 CCACCACCACTCTACCCCG 61.656 68.421 0.00 0.00 0.00 5.73
887 911 3.001406 ACCACCACTCTACCCCGC 61.001 66.667 0.00 0.00 0.00 6.13
888 912 3.782443 CCACCACTCTACCCCGCC 61.782 72.222 0.00 0.00 0.00 6.13
889 913 4.143333 CACCACTCTACCCCGCCG 62.143 72.222 0.00 0.00 0.00 6.46
894 918 4.301027 CTCTACCCCGCCGCCATC 62.301 72.222 0.00 0.00 0.00 3.51
932 956 4.459089 GCCGCCACCACTCTCCTC 62.459 72.222 0.00 0.00 0.00 3.71
933 957 3.775654 CCGCCACCACTCTCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
934 958 4.135153 CGCCACCACTCTCCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
935 959 4.459089 GCCACCACTCTCCTCCGC 62.459 72.222 0.00 0.00 0.00 5.54
936 960 4.135153 CCACCACTCTCCTCCGCG 62.135 72.222 0.00 0.00 0.00 6.46
937 961 4.135153 CACCACTCTCCTCCGCGG 62.135 72.222 22.12 22.12 0.00 6.46
942 966 4.292178 CTCTCCTCCGCGGCCATC 62.292 72.222 23.51 0.00 0.00 3.51
951 975 4.408821 GCGGCCATCCCTGTGACA 62.409 66.667 2.24 0.00 0.00 3.58
952 976 2.350895 CGGCCATCCCTGTGACAA 59.649 61.111 2.24 0.00 0.00 3.18
953 977 2.040544 CGGCCATCCCTGTGACAAC 61.041 63.158 2.24 0.00 0.00 3.32
954 978 2.040544 GGCCATCCCTGTGACAACG 61.041 63.158 0.00 0.00 0.00 4.10
955 979 2.690778 GCCATCCCTGTGACAACGC 61.691 63.158 0.00 0.00 0.00 4.84
956 980 1.302431 CCATCCCTGTGACAACGCA 60.302 57.895 0.00 0.00 35.17 5.24
962 986 2.110213 TGTGACAACGCAGACCCC 59.890 61.111 0.00 0.00 32.49 4.95
963 987 3.041940 GTGACAACGCAGACCCCG 61.042 66.667 0.00 0.00 0.00 5.73
964 988 4.980805 TGACAACGCAGACCCCGC 62.981 66.667 0.00 0.00 0.00 6.13
981 1005 3.834799 CCCCTACCGTCCGCAGTC 61.835 72.222 0.00 0.00 0.00 3.51
982 1006 4.189188 CCCTACCGTCCGCAGTCG 62.189 72.222 0.00 0.00 0.00 4.18
1020 1044 4.619227 CCGTCGGCCACCAACTGT 62.619 66.667 2.24 0.00 0.00 3.55
1021 1045 3.345808 CGTCGGCCACCAACTGTG 61.346 66.667 2.24 0.00 45.01 3.66
1022 1046 2.203153 GTCGGCCACCAACTGTGT 60.203 61.111 2.24 0.00 43.85 3.72
1023 1047 1.822186 GTCGGCCACCAACTGTGTT 60.822 57.895 2.24 0.00 43.85 3.32
1024 1048 0.533308 GTCGGCCACCAACTGTGTTA 60.533 55.000 2.24 0.00 43.85 2.41
1025 1049 0.398696 TCGGCCACCAACTGTGTTAT 59.601 50.000 2.24 0.00 43.85 1.89
1026 1050 1.202830 TCGGCCACCAACTGTGTTATT 60.203 47.619 2.24 0.00 43.85 1.40
1027 1051 2.038689 TCGGCCACCAACTGTGTTATTA 59.961 45.455 2.24 0.00 43.85 0.98
1028 1052 2.160813 CGGCCACCAACTGTGTTATTAC 59.839 50.000 2.24 0.00 43.85 1.89
1029 1053 2.160813 GGCCACCAACTGTGTTATTACG 59.839 50.000 0.00 0.00 43.85 3.18
1030 1054 2.413634 GCCACCAACTGTGTTATTACGC 60.414 50.000 0.00 0.00 43.85 4.42
1031 1055 2.160813 CCACCAACTGTGTTATTACGCC 59.839 50.000 0.00 0.00 43.85 5.68
1032 1056 3.071479 CACCAACTGTGTTATTACGCCT 58.929 45.455 0.00 0.00 40.26 5.52
1033 1057 3.071479 ACCAACTGTGTTATTACGCCTG 58.929 45.455 0.00 0.00 33.79 4.85
1034 1058 2.418628 CCAACTGTGTTATTACGCCTGG 59.581 50.000 0.00 0.00 33.79 4.45
1035 1059 1.734163 ACTGTGTTATTACGCCTGGC 58.266 50.000 9.11 9.11 33.79 4.85
1036 1060 1.278127 ACTGTGTTATTACGCCTGGCT 59.722 47.619 17.92 6.50 33.79 4.75
1037 1061 1.665679 CTGTGTTATTACGCCTGGCTG 59.334 52.381 17.92 12.68 33.79 4.85
1038 1062 0.377203 GTGTTATTACGCCTGGCTGC 59.623 55.000 17.92 0.00 0.00 5.25
1046 1070 3.134127 GCCTGGCTGCGTTTAGGG 61.134 66.667 12.43 1.52 0.00 3.53
1047 1071 2.438434 CCTGGCTGCGTTTAGGGG 60.438 66.667 0.00 0.00 0.00 4.79
1048 1072 2.668632 CTGGCTGCGTTTAGGGGA 59.331 61.111 0.00 0.00 0.00 4.81
1049 1073 1.002624 CTGGCTGCGTTTAGGGGAA 60.003 57.895 0.00 0.00 0.00 3.97
1050 1074 1.002624 TGGCTGCGTTTAGGGGAAG 60.003 57.895 0.00 0.00 0.00 3.46
1051 1075 2.407428 GGCTGCGTTTAGGGGAAGC 61.407 63.158 0.00 0.00 0.00 3.86
1052 1076 1.674322 GCTGCGTTTAGGGGAAGCA 60.674 57.895 0.00 0.00 36.34 3.91
1053 1077 1.241315 GCTGCGTTTAGGGGAAGCAA 61.241 55.000 0.00 0.00 37.38 3.91
1054 1078 1.463674 CTGCGTTTAGGGGAAGCAAT 58.536 50.000 0.00 0.00 37.38 3.56
1055 1079 1.401905 CTGCGTTTAGGGGAAGCAATC 59.598 52.381 0.00 0.00 37.38 2.67
1056 1080 1.004277 TGCGTTTAGGGGAAGCAATCT 59.996 47.619 0.00 0.00 34.66 2.40
1057 1081 1.401905 GCGTTTAGGGGAAGCAATCTG 59.598 52.381 0.00 0.00 0.00 2.90
1058 1082 2.017049 CGTTTAGGGGAAGCAATCTGG 58.983 52.381 0.00 0.00 0.00 3.86
1059 1083 1.751351 GTTTAGGGGAAGCAATCTGGC 59.249 52.381 0.00 0.00 0.00 4.85
1060 1084 0.107214 TTAGGGGAAGCAATCTGGCG 60.107 55.000 0.00 0.00 39.27 5.69
1061 1085 1.983119 TAGGGGAAGCAATCTGGCGG 61.983 60.000 0.00 0.00 39.27 6.13
1062 1086 2.830370 GGGAAGCAATCTGGCGGG 60.830 66.667 0.00 0.00 39.27 6.13
1063 1087 2.272146 GGAAGCAATCTGGCGGGA 59.728 61.111 0.00 0.00 39.27 5.14
1064 1088 1.821332 GGAAGCAATCTGGCGGGAG 60.821 63.158 0.00 0.00 39.27 4.30
1065 1089 1.221840 GAAGCAATCTGGCGGGAGA 59.778 57.895 0.00 0.00 39.27 3.71
1066 1090 1.078143 AAGCAATCTGGCGGGAGAC 60.078 57.895 0.00 0.00 39.27 3.36
1067 1091 2.859273 AAGCAATCTGGCGGGAGACG 62.859 60.000 0.00 0.00 45.14 4.18
1099 1123 4.518211 AGAAGAGTTGATTTCCTTGTGCAG 59.482 41.667 0.00 0.00 0.00 4.41
1111 1135 1.118965 TTGTGCAGTCGGGGAAGAGA 61.119 55.000 0.00 0.00 0.00 3.10
1112 1136 1.216710 GTGCAGTCGGGGAAGAGAG 59.783 63.158 0.00 0.00 0.00 3.20
1113 1137 1.984570 TGCAGTCGGGGAAGAGAGG 60.985 63.158 0.00 0.00 0.00 3.69
1114 1138 1.682684 GCAGTCGGGGAAGAGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
1115 1139 1.950973 GCAGTCGGGGAAGAGAGGAC 61.951 65.000 0.00 0.00 0.00 3.85
1116 1140 0.323908 CAGTCGGGGAAGAGAGGACT 60.324 60.000 0.00 0.00 38.42 3.85
1117 1141 1.064611 CAGTCGGGGAAGAGAGGACTA 60.065 57.143 0.00 0.00 36.28 2.59
1122 1146 3.705072 TCGGGGAAGAGAGGACTAATTTC 59.295 47.826 0.00 0.00 0.00 2.17
1123 1147 3.491104 CGGGGAAGAGAGGACTAATTTCG 60.491 52.174 0.00 0.00 0.00 3.46
1124 1148 3.705072 GGGGAAGAGAGGACTAATTTCGA 59.295 47.826 0.00 0.00 0.00 3.71
1125 1149 4.161754 GGGGAAGAGAGGACTAATTTCGAA 59.838 45.833 0.00 0.00 0.00 3.71
1126 1150 5.163290 GGGGAAGAGAGGACTAATTTCGAAT 60.163 44.000 0.00 0.00 0.00 3.34
1127 1151 6.350103 GGGAAGAGAGGACTAATTTCGAATT 58.650 40.000 0.00 0.00 0.00 2.17
1128 1152 6.480651 GGGAAGAGAGGACTAATTTCGAATTC 59.519 42.308 0.00 0.00 0.00 2.17
1129 1153 7.042335 GGAAGAGAGGACTAATTTCGAATTCA 58.958 38.462 6.22 0.00 0.00 2.57
1130 1154 7.223777 GGAAGAGAGGACTAATTTCGAATTCAG 59.776 40.741 6.22 0.00 0.00 3.02
1131 1155 7.411486 AGAGAGGACTAATTTCGAATTCAGA 57.589 36.000 6.22 1.16 0.00 3.27
1132 1156 7.488322 AGAGAGGACTAATTTCGAATTCAGAG 58.512 38.462 6.22 0.00 0.00 3.35
1133 1157 7.123547 AGAGAGGACTAATTTCGAATTCAGAGT 59.876 37.037 6.22 0.62 0.00 3.24
1134 1158 7.262048 AGAGGACTAATTTCGAATTCAGAGTC 58.738 38.462 6.22 9.33 33.00 3.36
1135 1159 7.123547 AGAGGACTAATTTCGAATTCAGAGTCT 59.876 37.037 18.85 0.00 34.01 3.24
1136 1160 7.038659 AGGACTAATTTCGAATTCAGAGTCTG 58.961 38.462 14.36 14.36 34.01 3.51
1137 1161 6.814146 GGACTAATTTCGAATTCAGAGTCTGT 59.186 38.462 19.53 0.31 34.01 3.41
1138 1162 7.332182 GGACTAATTTCGAATTCAGAGTCTGTT 59.668 37.037 19.53 7.84 34.01 3.16
1139 1163 8.608844 ACTAATTTCGAATTCAGAGTCTGTTT 57.391 30.769 19.53 14.07 32.61 2.83
1140 1164 8.499162 ACTAATTTCGAATTCAGAGTCTGTTTG 58.501 33.333 19.53 11.41 32.61 2.93
1141 1165 4.732285 TTCGAATTCAGAGTCTGTTTGC 57.268 40.909 19.53 6.53 32.61 3.68
1142 1166 3.995199 TCGAATTCAGAGTCTGTTTGCT 58.005 40.909 19.53 1.83 32.61 3.91
1143 1167 3.990469 TCGAATTCAGAGTCTGTTTGCTC 59.010 43.478 19.53 9.46 32.61 4.26
1144 1168 3.742882 CGAATTCAGAGTCTGTTTGCTCA 59.257 43.478 19.53 0.00 34.39 4.26
1145 1169 4.212004 CGAATTCAGAGTCTGTTTGCTCAA 59.788 41.667 19.53 5.41 34.39 3.02
1174 1198 1.486211 TCACGATCCTCCTCCCTTTC 58.514 55.000 0.00 0.00 0.00 2.62
1176 1200 0.033405 ACGATCCTCCTCCCTTTCGA 60.033 55.000 0.00 0.00 0.00 3.71
1201 1336 2.076863 GATTAGTCTGCTTTGTGGCGT 58.923 47.619 0.00 0.00 34.52 5.68
1217 1352 2.447089 GCGTCGGCCTAAATAAACAC 57.553 50.000 0.00 0.00 0.00 3.32
1219 1354 2.160022 GCGTCGGCCTAAATAAACACAA 59.840 45.455 0.00 0.00 0.00 3.33
1229 1367 6.472887 CCTAAATAAACACAACAGGAGGAGA 58.527 40.000 0.00 0.00 0.00 3.71
1237 1375 0.912006 AACAGGAGGAGAAGGAGGGC 60.912 60.000 0.00 0.00 0.00 5.19
1247 1390 1.077429 AAGGAGGGCGATTTCAGGC 60.077 57.895 0.00 0.00 0.00 4.85
1254 1397 2.817423 GCGATTTCAGGCCAGCTCG 61.817 63.158 5.01 7.84 0.00 5.03
1281 1424 1.131126 CGCCATTGTCACAGATCCAAC 59.869 52.381 0.00 0.00 0.00 3.77
1284 1427 3.005684 GCCATTGTCACAGATCCAACAAA 59.994 43.478 4.54 0.00 35.46 2.83
1294 1437 5.063438 CACAGATCCAACAAAGTACATACGG 59.937 44.000 0.00 0.00 0.00 4.02
1315 1482 3.057596 GGCAAAGACATTTGTTGATCCGA 60.058 43.478 2.98 0.00 46.26 4.55
1316 1483 4.380867 GGCAAAGACATTTGTTGATCCGAT 60.381 41.667 2.98 0.00 46.26 4.18
1317 1484 4.795278 GCAAAGACATTTGTTGATCCGATC 59.205 41.667 1.01 1.01 46.26 3.69
1340 1507 2.957680 TCAGCCATGAAGAACAAAAGCA 59.042 40.909 0.00 0.00 30.61 3.91
1574 3557 2.030717 CACGCTCGATGCTATAAGGACT 60.031 50.000 0.00 0.00 40.11 3.85
1618 3601 1.488393 GAAGCTCCCTACCATGCTCTT 59.512 52.381 0.00 0.00 34.38 2.85
1690 3721 4.127171 GTTGTGGCTCATGTAACGGATAT 58.873 43.478 0.00 0.00 0.00 1.63
1739 3770 5.473504 AGTTACCATCAGCGAACTCAAAATT 59.526 36.000 0.00 0.00 0.00 1.82
1761 3792 8.579850 AATTAGATTTGTCTTGTTGCCTGATA 57.420 30.769 0.00 0.00 0.00 2.15
1892 3923 0.472471 ACCTCCTCCAGTTTGCGAAA 59.528 50.000 0.00 0.00 0.00 3.46
1991 4182 2.162681 GGTGAACTGGACATTCCCAAG 58.837 52.381 0.00 0.00 35.03 3.61
2005 4196 1.556911 TCCCAAGATCCTCAGCACTTC 59.443 52.381 0.00 0.00 0.00 3.01
2109 4327 5.444663 TGAGATTGAGGTCGAGATATGTG 57.555 43.478 0.00 0.00 0.00 3.21
2271 4492 3.282885 CTCCTTGCTAATGTTCCTTCCC 58.717 50.000 0.00 0.00 0.00 3.97
2348 4836 5.965033 ATCATACCTGTCCATTCTCACTT 57.035 39.130 0.00 0.00 0.00 3.16
2357 4849 5.439721 TGTCCATTCTCACTTTATGATGGG 58.560 41.667 0.00 0.00 36.16 4.00
2431 4932 4.843728 TCTACCAGAATGCCCAAAACTAG 58.156 43.478 0.00 0.00 31.97 2.57
2452 4953 0.311790 CACGCCTGTGCTCAACAAAT 59.688 50.000 0.00 0.00 39.67 2.32
2522 5023 8.860088 AGCTTGGACAATGTTTATTCTTAAAGT 58.140 29.630 0.00 0.00 0.00 2.66
2542 5043 1.742308 TGCACCCTCCCTAAAAGAGT 58.258 50.000 0.00 0.00 0.00 3.24
2723 5227 6.624352 ACCCGATGACAATTTTATGAGATG 57.376 37.500 0.00 0.00 0.00 2.90
2798 5304 1.302192 GAAAGGTGTGTGGGCGCTA 60.302 57.895 7.64 0.00 0.00 4.26
2919 5425 0.250124 CGGGTGCTGTGGTTCACTTA 60.250 55.000 0.00 0.00 35.11 2.24
2974 5480 7.005296 ACATTACTATGGTACTCCCTCTGTAG 58.995 42.308 0.00 0.00 36.01 2.74
2987 5493 5.529289 TCCCTCTGTAGACAAATGTAGGAT 58.471 41.667 0.00 0.00 0.00 3.24
3128 5635 4.513692 AGTTATTGTGCTTGTACGCTTTCA 59.486 37.500 0.00 0.00 0.00 2.69
3132 5639 3.884169 TGTGCTTGTACGCTTTCATTTC 58.116 40.909 0.00 0.00 0.00 2.17
3146 5653 7.127686 CGCTTTCATTTCAATTGAAGCTTTTT 58.872 30.769 19.64 1.49 35.21 1.94
3244 5751 6.543465 AGAAACAAGTTGACATCACTTCATCA 59.457 34.615 10.54 0.00 0.00 3.07
3298 5805 6.321717 AGACAATTTATTGCAATGGTACGTG 58.678 36.000 22.27 13.52 41.38 4.49
3392 5899 8.450578 AATTAACTTTCTGAACATCACACAGA 57.549 30.769 0.00 0.00 38.61 3.41
3421 5928 2.957491 TGCTGAAACAAACACTTGGG 57.043 45.000 0.00 0.00 36.82 4.12
3424 5931 3.957497 TGCTGAAACAAACACTTGGGTAT 59.043 39.130 0.00 0.00 36.82 2.73
3446 5953 3.558931 TTTCTGACAAACCAGAGAGCA 57.441 42.857 0.00 0.00 43.28 4.26
3454 5961 2.540265 AACCAGAGAGCAACACAGAG 57.460 50.000 0.00 0.00 0.00 3.35
3533 6040 2.376915 TGCGAGCACTTTTTACAACG 57.623 45.000 0.00 0.00 0.00 4.10
3554 6061 8.079809 ACAACGGACACTAAAAATTATCCAAAG 58.920 33.333 0.00 0.00 0.00 2.77
3559 6069 9.140286 GGACACTAAAAATTATCCAAAGAAAGC 57.860 33.333 0.00 0.00 0.00 3.51
3594 6104 6.642950 ACAACTTATGCTAGATAACTCGATGC 59.357 38.462 0.00 0.00 0.00 3.91
3595 6105 5.715070 ACTTATGCTAGATAACTCGATGCC 58.285 41.667 0.00 0.00 0.00 4.40
3604 6114 1.610673 ACTCGATGCCAGAGTGGGT 60.611 57.895 5.23 0.00 46.12 4.51
3647 6158 5.389642 TTTCGCTTGTGCTAGATAAATCG 57.610 39.130 0.00 0.00 36.97 3.34
3655 6166 4.039124 TGTGCTAGATAAATCGATGGCAGA 59.961 41.667 0.00 0.00 0.00 4.26
3694 6205 7.930865 AGCTTGCTTTCTCTTGGTATAAGATAG 59.069 37.037 0.00 0.00 0.00 2.08
3841 6353 6.936900 ACACTATGTAAGACAGACTGCAATTT 59.063 34.615 1.25 0.00 0.00 1.82
3866 6378 6.701841 TGTTAGTTCTGAAGCACTTCTTACAG 59.298 38.462 11.44 1.88 40.14 2.74
3867 6379 5.283457 AGTTCTGAAGCACTTCTTACAGT 57.717 39.130 11.44 0.00 40.14 3.55
3888 6400 6.605594 ACAGTGGACACTAAAAATTCTCCAAA 59.394 34.615 4.41 0.00 40.20 3.28
3924 6436 7.897864 ACACTACAAGTTCTGCTAGATAACTT 58.102 34.615 10.17 10.17 42.60 2.66
3932 6444 5.357742 TCTGCTAGATAACTTGATGGCAA 57.642 39.130 0.00 0.00 0.00 4.52
3951 6463 5.709631 TGGCAAATACTGAAGCACTCATTTA 59.290 36.000 0.00 0.00 32.14 1.40
3963 6475 4.036027 AGCACTCATTTATTCTTGATGGCG 59.964 41.667 0.00 0.00 0.00 5.69
3964 6476 4.285292 CACTCATTTATTCTTGATGGCGC 58.715 43.478 0.00 0.00 0.00 6.53
3966 6478 2.290367 TCATTTATTCTTGATGGCGCGG 59.710 45.455 8.83 0.00 0.00 6.46
3994 6506 1.002315 GTAACTTTGGCACCGGTAGGA 59.998 52.381 6.87 0.00 41.02 2.94
4022 6534 1.003839 TCCACGCCCTTGATGACAC 60.004 57.895 0.00 0.00 0.00 3.67
4059 6577 3.268330 GTCTCATGTCATGCACAGTGAT 58.732 45.455 4.15 0.00 38.85 3.06
4068 6586 0.250510 TGCACAGTGATACGGCCAAA 60.251 50.000 4.15 0.00 0.00 3.28
4069 6587 0.447801 GCACAGTGATACGGCCAAAG 59.552 55.000 4.15 0.00 0.00 2.77
4083 6601 1.303282 CAAAGGGAGGGTAGGTGGC 59.697 63.158 0.00 0.00 0.00 5.01
4097 6615 3.557220 TGGCGAAGGTCTCCACAA 58.443 55.556 0.00 0.00 0.00 3.33
4108 6626 0.251297 TCTCCACAACCATGGGCTTG 60.251 55.000 18.09 14.79 40.49 4.01
4120 6638 0.324552 TGGGCTTGGTGGGAATCATG 60.325 55.000 0.00 0.00 0.00 3.07
4168 6694 2.005370 TGAACTTCGGGTACACCTCT 57.995 50.000 0.00 0.00 36.97 3.69
4179 6705 3.372892 GGGTACACCTCTAGCTCCTTACT 60.373 52.174 0.00 0.00 35.85 2.24
4180 6706 3.633065 GGTACACCTCTAGCTCCTTACTG 59.367 52.174 0.00 0.00 0.00 2.74
4181 6707 3.741245 ACACCTCTAGCTCCTTACTGA 57.259 47.619 0.00 0.00 0.00 3.41
4182 6708 4.258457 ACACCTCTAGCTCCTTACTGAT 57.742 45.455 0.00 0.00 0.00 2.90
4183 6709 3.957497 ACACCTCTAGCTCCTTACTGATG 59.043 47.826 0.00 0.00 0.00 3.07
4184 6710 3.957497 CACCTCTAGCTCCTTACTGATGT 59.043 47.826 0.00 0.00 0.00 3.06
4185 6711 4.037446 CACCTCTAGCTCCTTACTGATGTC 59.963 50.000 0.00 0.00 0.00 3.06
4186 6712 4.079443 ACCTCTAGCTCCTTACTGATGTCT 60.079 45.833 0.00 0.00 0.00 3.41
4187 6713 5.132985 ACCTCTAGCTCCTTACTGATGTCTA 59.867 44.000 0.00 0.00 0.00 2.59
4188 6714 5.472137 CCTCTAGCTCCTTACTGATGTCTAC 59.528 48.000 0.00 0.00 0.00 2.59
4189 6715 6.255294 TCTAGCTCCTTACTGATGTCTACT 57.745 41.667 0.00 0.00 0.00 2.57
4190 6716 7.376335 TCTAGCTCCTTACTGATGTCTACTA 57.624 40.000 0.00 0.00 0.00 1.82
4191 6717 7.218614 TCTAGCTCCTTACTGATGTCTACTAC 58.781 42.308 0.00 0.00 0.00 2.73
4192 6718 5.756918 AGCTCCTTACTGATGTCTACTACA 58.243 41.667 0.00 0.00 43.86 2.74
4193 6719 5.591067 AGCTCCTTACTGATGTCTACTACAC 59.409 44.000 0.00 0.00 42.09 2.90
4194 6720 5.357314 GCTCCTTACTGATGTCTACTACACA 59.643 44.000 0.00 0.00 42.09 3.72
4195 6721 6.127703 GCTCCTTACTGATGTCTACTACACAA 60.128 42.308 0.00 0.00 42.09 3.33
4196 6722 7.154435 TCCTTACTGATGTCTACTACACAAC 57.846 40.000 0.00 0.00 42.09 3.32
4197 6723 6.152323 TCCTTACTGATGTCTACTACACAACC 59.848 42.308 0.00 0.00 42.09 3.77
4198 6724 6.153000 CCTTACTGATGTCTACTACACAACCT 59.847 42.308 0.00 0.00 42.09 3.50
4199 6725 7.309867 CCTTACTGATGTCTACTACACAACCTT 60.310 40.741 0.00 0.00 42.09 3.50
4200 6726 6.026947 ACTGATGTCTACTACACAACCTTC 57.973 41.667 0.00 0.00 42.09 3.46
4201 6727 5.775701 ACTGATGTCTACTACACAACCTTCT 59.224 40.000 0.00 0.00 42.09 2.85
4202 6728 6.267928 ACTGATGTCTACTACACAACCTTCTT 59.732 38.462 0.00 0.00 42.09 2.52
4203 6729 6.688578 TGATGTCTACTACACAACCTTCTTC 58.311 40.000 0.00 0.00 42.09 2.87
4204 6730 6.493802 TGATGTCTACTACACAACCTTCTTCT 59.506 38.462 0.00 0.00 42.09 2.85
4205 6731 6.726490 TGTCTACTACACAACCTTCTTCTT 57.274 37.500 0.00 0.00 31.43 2.52
4206 6732 6.513180 TGTCTACTACACAACCTTCTTCTTG 58.487 40.000 0.00 0.00 31.43 3.02
4207 6733 6.097839 TGTCTACTACACAACCTTCTTCTTGT 59.902 38.462 0.00 0.00 31.43 3.16
4208 6734 7.286087 TGTCTACTACACAACCTTCTTCTTGTA 59.714 37.037 0.00 0.00 31.43 2.41
4209 6735 7.808856 GTCTACTACACAACCTTCTTCTTGTAG 59.191 40.741 5.27 5.27 41.37 2.74
4210 6736 6.726490 ACTACACAACCTTCTTCTTGTAGA 57.274 37.500 12.31 0.00 39.06 2.59
4211 6737 6.514063 ACTACACAACCTTCTTCTTGTAGAC 58.486 40.000 12.31 0.00 39.06 2.59
4212 6738 4.369182 ACACAACCTTCTTCTTGTAGACG 58.631 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.072266 TCCCATGGCACTAACAAGGT 58.928 50.000 6.09 0.00 0.00 3.50
10 11 1.915489 AGACATGTCCCATGGCACTAA 59.085 47.619 22.21 0.00 0.00 2.24
185 193 1.464395 TGTTGCCACCCCCTCCTAA 60.464 57.895 0.00 0.00 0.00 2.69
186 194 2.208640 TGTTGCCACCCCCTCCTA 59.791 61.111 0.00 0.00 0.00 2.94
210 219 2.683768 AGCACCCCCAAAAATGTTGTA 58.316 42.857 0.00 0.00 0.00 2.41
237 246 1.070445 GGAGATCATGGCTCGGTGG 59.930 63.158 0.00 0.00 33.19 4.61
247 256 1.213926 GGCTTTCACCCTGGAGATCAT 59.786 52.381 0.00 0.00 0.00 2.45
363 376 0.802494 GTTGTTGTCGCCCGATCAAT 59.198 50.000 0.00 0.00 0.00 2.57
385 398 4.016444 TCCAGGAAGGAAATAATGCACAC 58.984 43.478 0.00 0.00 45.65 3.82
403 416 2.680913 CCAAAAGCGACGCCTCCAG 61.681 63.158 17.79 3.01 0.00 3.86
437 451 0.179012 ACCAAAAACGACACCCGGAT 60.179 50.000 0.73 0.00 43.93 4.18
447 461 2.946990 ACTCTAACCACCACCAAAAACG 59.053 45.455 0.00 0.00 0.00 3.60
531 548 7.979444 TGAACACACCCAAAAACAAAAATAA 57.021 28.000 0.00 0.00 0.00 1.40
547 565 5.615544 CGAAAGACATCAGGAATGAACACAC 60.616 44.000 0.00 0.00 38.83 3.82
553 571 3.873361 GCATCGAAAGACATCAGGAATGA 59.127 43.478 0.00 0.00 46.97 2.57
559 577 5.525012 TCAATAAGGCATCGAAAGACATCAG 59.475 40.000 0.00 0.00 46.97 2.90
575 593 6.319658 ACCAATTACACTCTGCATCAATAAGG 59.680 38.462 0.00 0.00 0.00 2.69
579 597 9.578576 AATATACCAATTACACTCTGCATCAAT 57.421 29.630 0.00 0.00 0.00 2.57
644 668 9.495572 CCTCTCTAGGGCAGTAAATTTATTTAG 57.504 37.037 0.31 0.00 39.48 1.85
659 683 1.403687 ATGGTTCGCCTCTCTAGGGC 61.404 60.000 0.00 0.00 43.87 5.19
660 684 0.390860 CATGGTTCGCCTCTCTAGGG 59.609 60.000 0.00 0.00 43.87 3.53
661 685 1.115467 ACATGGTTCGCCTCTCTAGG 58.885 55.000 0.00 0.00 46.76 3.02
662 686 2.544685 CAACATGGTTCGCCTCTCTAG 58.455 52.381 0.00 0.00 38.36 2.43
663 687 1.405526 GCAACATGGTTCGCCTCTCTA 60.406 52.381 0.00 0.00 38.36 2.43
664 688 0.674895 GCAACATGGTTCGCCTCTCT 60.675 55.000 0.00 0.00 38.36 3.10
665 689 1.648467 GGCAACATGGTTCGCCTCTC 61.648 60.000 4.86 0.00 41.50 3.20
666 690 1.675641 GGCAACATGGTTCGCCTCT 60.676 57.895 4.86 0.00 41.50 3.69
667 691 2.700773 GGGCAACATGGTTCGCCTC 61.701 63.158 11.59 0.00 44.27 4.70
668 692 2.676471 GGGCAACATGGTTCGCCT 60.676 61.111 11.59 0.00 44.27 5.52
669 693 2.093537 TTTGGGCAACATGGTTCGCC 62.094 55.000 3.46 3.46 44.10 5.54
670 694 0.249657 TTTTGGGCAACATGGTTCGC 60.250 50.000 0.00 0.00 39.74 4.70
671 695 1.864082 GTTTTTGGGCAACATGGTTCG 59.136 47.619 0.00 0.00 39.74 3.95
672 696 3.192541 AGTTTTTGGGCAACATGGTTC 57.807 42.857 0.00 0.00 39.74 3.62
673 697 3.277715 CAAGTTTTTGGGCAACATGGTT 58.722 40.909 0.00 0.00 39.74 3.67
674 698 2.916640 CAAGTTTTTGGGCAACATGGT 58.083 42.857 0.00 0.00 39.74 3.55
685 709 3.056304 CCGTAACATGGCCAAGTTTTTG 58.944 45.455 29.50 18.83 0.00 2.44
686 710 2.696187 ACCGTAACATGGCCAAGTTTTT 59.304 40.909 29.50 10.24 0.00 1.94
687 711 2.312390 ACCGTAACATGGCCAAGTTTT 58.688 42.857 29.50 10.99 0.00 2.43
688 712 1.989706 ACCGTAACATGGCCAAGTTT 58.010 45.000 29.50 15.70 0.00 2.66
689 713 1.989706 AACCGTAACATGGCCAAGTT 58.010 45.000 27.73 27.73 0.00 2.66
690 714 1.989706 AAACCGTAACATGGCCAAGT 58.010 45.000 10.96 9.36 0.00 3.16
691 715 3.378911 AAAAACCGTAACATGGCCAAG 57.621 42.857 10.96 8.43 0.00 3.61
759 783 4.035675 GCTTCCTCGTATGCTAGCATTTTT 59.964 41.667 33.74 14.59 37.82 1.94
760 784 3.561725 GCTTCCTCGTATGCTAGCATTTT 59.438 43.478 33.74 14.98 37.82 1.82
761 785 3.134458 GCTTCCTCGTATGCTAGCATTT 58.866 45.455 33.74 15.75 37.82 2.32
762 786 2.103094 TGCTTCCTCGTATGCTAGCATT 59.897 45.455 33.74 18.29 37.82 3.56
763 787 1.688735 TGCTTCCTCGTATGCTAGCAT 59.311 47.619 31.60 31.60 40.19 3.79
764 788 1.111277 TGCTTCCTCGTATGCTAGCA 58.889 50.000 21.85 21.85 36.38 3.49
765 789 2.447244 ATGCTTCCTCGTATGCTAGC 57.553 50.000 8.10 8.10 0.00 3.42
766 790 4.238514 GGTTATGCTTCCTCGTATGCTAG 58.761 47.826 0.00 0.00 0.00 3.42
767 791 3.305131 CGGTTATGCTTCCTCGTATGCTA 60.305 47.826 0.00 0.00 0.00 3.49
768 792 2.545952 CGGTTATGCTTCCTCGTATGCT 60.546 50.000 0.00 0.00 0.00 3.79
769 793 1.792949 CGGTTATGCTTCCTCGTATGC 59.207 52.381 0.00 0.00 0.00 3.14
770 794 3.364889 TCGGTTATGCTTCCTCGTATG 57.635 47.619 0.00 0.00 0.00 2.39
771 795 4.395959 TTTCGGTTATGCTTCCTCGTAT 57.604 40.909 0.00 0.00 0.00 3.06
772 796 3.872511 TTTCGGTTATGCTTCCTCGTA 57.127 42.857 0.00 0.00 0.00 3.43
773 797 2.754946 TTTCGGTTATGCTTCCTCGT 57.245 45.000 0.00 0.00 0.00 4.18
774 798 3.682858 TCTTTTTCGGTTATGCTTCCTCG 59.317 43.478 0.00 0.00 0.00 4.63
775 799 5.622770 TTCTTTTTCGGTTATGCTTCCTC 57.377 39.130 0.00 0.00 0.00 3.71
776 800 6.040504 AGTTTTCTTTTTCGGTTATGCTTCCT 59.959 34.615 0.00 0.00 0.00 3.36
777 801 6.213677 AGTTTTCTTTTTCGGTTATGCTTCC 58.786 36.000 0.00 0.00 0.00 3.46
778 802 6.086371 CGAGTTTTCTTTTTCGGTTATGCTTC 59.914 38.462 0.00 0.00 0.00 3.86
779 803 5.912955 CGAGTTTTCTTTTTCGGTTATGCTT 59.087 36.000 0.00 0.00 0.00 3.91
780 804 5.008316 ACGAGTTTTCTTTTTCGGTTATGCT 59.992 36.000 0.00 0.00 37.38 3.79
781 805 5.115021 CACGAGTTTTCTTTTTCGGTTATGC 59.885 40.000 0.00 0.00 37.38 3.14
782 806 5.115021 GCACGAGTTTTCTTTTTCGGTTATG 59.885 40.000 0.00 0.00 37.38 1.90
783 807 5.209977 GCACGAGTTTTCTTTTTCGGTTAT 58.790 37.500 0.00 0.00 37.38 1.89
784 808 4.590226 GCACGAGTTTTCTTTTTCGGTTA 58.410 39.130 0.00 0.00 37.38 2.85
785 809 3.431856 GCACGAGTTTTCTTTTTCGGTT 58.568 40.909 0.00 0.00 37.38 4.44
786 810 2.538132 CGCACGAGTTTTCTTTTTCGGT 60.538 45.455 0.00 0.00 37.38 4.69
787 811 2.034076 CGCACGAGTTTTCTTTTTCGG 58.966 47.619 0.00 0.00 37.38 4.30
788 812 2.034076 CCGCACGAGTTTTCTTTTTCG 58.966 47.619 0.00 0.00 38.88 3.46
789 813 3.328237 TCCGCACGAGTTTTCTTTTTC 57.672 42.857 0.00 0.00 0.00 2.29
790 814 3.564225 AGATCCGCACGAGTTTTCTTTTT 59.436 39.130 0.00 0.00 0.00 1.94
791 815 3.139077 AGATCCGCACGAGTTTTCTTTT 58.861 40.909 0.00 0.00 0.00 2.27
792 816 2.767505 AGATCCGCACGAGTTTTCTTT 58.232 42.857 0.00 0.00 0.00 2.52
793 817 2.457366 AGATCCGCACGAGTTTTCTT 57.543 45.000 0.00 0.00 0.00 2.52
794 818 3.491104 GGATAGATCCGCACGAGTTTTCT 60.491 47.826 0.00 0.00 37.19 2.52
795 819 2.795470 GGATAGATCCGCACGAGTTTTC 59.205 50.000 0.00 0.00 37.19 2.29
796 820 2.822764 GGATAGATCCGCACGAGTTTT 58.177 47.619 0.00 0.00 37.19 2.43
797 821 2.510768 GGATAGATCCGCACGAGTTT 57.489 50.000 0.00 0.00 37.19 2.66
808 832 1.080434 GCGGCCGAGTGGATAGATC 60.080 63.158 33.48 1.41 37.49 2.75
809 833 1.810606 CTGCGGCCGAGTGGATAGAT 61.811 60.000 33.48 0.00 37.49 1.98
810 834 2.441348 TGCGGCCGAGTGGATAGA 60.441 61.111 33.48 0.00 37.49 1.98
811 835 2.028190 CTGCGGCCGAGTGGATAG 59.972 66.667 33.48 10.37 37.49 2.08
812 836 3.536917 CCTGCGGCCGAGTGGATA 61.537 66.667 33.48 3.94 37.49 2.59
844 868 4.410400 GTGGAGCGGGAGGGGTTG 62.410 72.222 0.00 0.00 0.00 3.77
863 887 2.280552 TAGAGTGGTGGTGGACGGC 61.281 63.158 0.00 0.00 0.00 5.68
864 888 1.590147 GTAGAGTGGTGGTGGACGG 59.410 63.158 0.00 0.00 0.00 4.79
865 889 1.590147 GGTAGAGTGGTGGTGGACG 59.410 63.158 0.00 0.00 0.00 4.79
866 890 1.551019 GGGGTAGAGTGGTGGTGGAC 61.551 65.000 0.00 0.00 0.00 4.02
867 891 1.229400 GGGGTAGAGTGGTGGTGGA 60.229 63.158 0.00 0.00 0.00 4.02
868 892 2.656069 CGGGGTAGAGTGGTGGTGG 61.656 68.421 0.00 0.00 0.00 4.61
869 893 2.978824 CGGGGTAGAGTGGTGGTG 59.021 66.667 0.00 0.00 0.00 4.17
870 894 3.001406 GCGGGGTAGAGTGGTGGT 61.001 66.667 0.00 0.00 0.00 4.16
871 895 3.782443 GGCGGGGTAGAGTGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
872 896 4.143333 CGGCGGGGTAGAGTGGTG 62.143 72.222 0.00 0.00 0.00 4.17
877 901 4.301027 GATGGCGGCGGGGTAGAG 62.301 72.222 9.78 0.00 0.00 2.43
915 939 4.459089 GAGGAGAGTGGTGGCGGC 62.459 72.222 0.00 0.00 0.00 6.53
916 940 3.775654 GGAGGAGAGTGGTGGCGG 61.776 72.222 0.00 0.00 0.00 6.13
917 941 4.135153 CGGAGGAGAGTGGTGGCG 62.135 72.222 0.00 0.00 0.00 5.69
918 942 4.459089 GCGGAGGAGAGTGGTGGC 62.459 72.222 0.00 0.00 0.00 5.01
919 943 4.135153 CGCGGAGGAGAGTGGTGG 62.135 72.222 0.00 0.00 0.00 4.61
920 944 4.135153 CCGCGGAGGAGAGTGGTG 62.135 72.222 24.07 0.00 45.00 4.17
925 949 4.292178 GATGGCCGCGGAGGAGAG 62.292 72.222 33.48 0.00 45.00 3.20
934 958 3.918253 TTGTCACAGGGATGGCCGC 62.918 63.158 0.00 0.00 33.83 6.53
935 959 2.040544 GTTGTCACAGGGATGGCCG 61.041 63.158 0.00 0.00 33.83 6.13
936 960 2.040544 CGTTGTCACAGGGATGGCC 61.041 63.158 0.00 0.00 0.00 5.36
937 961 2.690778 GCGTTGTCACAGGGATGGC 61.691 63.158 0.00 0.00 0.00 4.40
938 962 1.300971 CTGCGTTGTCACAGGGATGG 61.301 60.000 0.00 0.00 0.00 3.51
939 963 0.320683 TCTGCGTTGTCACAGGGATG 60.321 55.000 0.00 0.00 34.57 3.51
940 964 0.320771 GTCTGCGTTGTCACAGGGAT 60.321 55.000 0.00 0.00 34.57 3.85
941 965 1.069090 GTCTGCGTTGTCACAGGGA 59.931 57.895 0.00 0.00 34.57 4.20
942 966 1.961277 GGTCTGCGTTGTCACAGGG 60.961 63.158 0.00 0.00 34.57 4.45
943 967 1.961277 GGGTCTGCGTTGTCACAGG 60.961 63.158 0.00 0.00 34.57 4.00
944 968 1.961277 GGGGTCTGCGTTGTCACAG 60.961 63.158 0.00 0.00 35.15 3.66
945 969 2.110213 GGGGTCTGCGTTGTCACA 59.890 61.111 0.00 0.00 0.00 3.58
946 970 3.041940 CGGGGTCTGCGTTGTCAC 61.042 66.667 0.00 0.00 0.00 3.67
947 971 4.980805 GCGGGGTCTGCGTTGTCA 62.981 66.667 0.00 0.00 0.00 3.58
964 988 3.834799 GACTGCGGACGGTAGGGG 61.835 72.222 0.00 0.00 34.75 4.79
965 989 4.189188 CGACTGCGGACGGTAGGG 62.189 72.222 9.63 0.00 34.75 3.53
1003 1027 4.619227 ACAGTTGGTGGCCGACGG 62.619 66.667 10.29 10.29 42.48 4.79
1004 1028 3.345808 CACAGTTGGTGGCCGACG 61.346 66.667 0.00 0.00 42.48 5.12
1012 1036 3.071479 CAGGCGTAATAACACAGTTGGT 58.929 45.455 0.00 0.00 0.00 3.67
1013 1037 2.418628 CCAGGCGTAATAACACAGTTGG 59.581 50.000 0.00 0.00 0.00 3.77
1014 1038 2.159572 GCCAGGCGTAATAACACAGTTG 60.160 50.000 0.00 0.00 0.00 3.16
1015 1039 2.081462 GCCAGGCGTAATAACACAGTT 58.919 47.619 0.00 0.00 0.00 3.16
1016 1040 1.278127 AGCCAGGCGTAATAACACAGT 59.722 47.619 5.55 0.00 0.00 3.55
1017 1041 1.665679 CAGCCAGGCGTAATAACACAG 59.334 52.381 5.55 0.00 0.00 3.66
1018 1042 1.732941 CAGCCAGGCGTAATAACACA 58.267 50.000 5.55 0.00 0.00 3.72
1019 1043 0.377203 GCAGCCAGGCGTAATAACAC 59.623 55.000 5.55 0.00 0.00 3.32
1020 1044 2.775351 GCAGCCAGGCGTAATAACA 58.225 52.632 5.55 0.00 0.00 2.41
1029 1053 3.134127 CCCTAAACGCAGCCAGGC 61.134 66.667 1.84 1.84 0.00 4.85
1030 1054 2.438434 CCCCTAAACGCAGCCAGG 60.438 66.667 0.00 0.00 0.00 4.45
1031 1055 1.002624 TTCCCCTAAACGCAGCCAG 60.003 57.895 0.00 0.00 0.00 4.85
1032 1056 1.002624 CTTCCCCTAAACGCAGCCA 60.003 57.895 0.00 0.00 0.00 4.75
1033 1057 2.407428 GCTTCCCCTAAACGCAGCC 61.407 63.158 0.00 0.00 0.00 4.85
1034 1058 1.241315 TTGCTTCCCCTAAACGCAGC 61.241 55.000 0.00 0.00 31.63 5.25
1035 1059 1.401905 GATTGCTTCCCCTAAACGCAG 59.598 52.381 0.00 0.00 31.63 5.18
1036 1060 1.004277 AGATTGCTTCCCCTAAACGCA 59.996 47.619 0.00 0.00 0.00 5.24
1037 1061 1.401905 CAGATTGCTTCCCCTAAACGC 59.598 52.381 0.00 0.00 0.00 4.84
1038 1062 2.017049 CCAGATTGCTTCCCCTAAACG 58.983 52.381 0.00 0.00 0.00 3.60
1039 1063 1.751351 GCCAGATTGCTTCCCCTAAAC 59.249 52.381 0.00 0.00 0.00 2.01
1040 1064 1.681780 CGCCAGATTGCTTCCCCTAAA 60.682 52.381 0.00 0.00 0.00 1.85
1041 1065 0.107214 CGCCAGATTGCTTCCCCTAA 60.107 55.000 0.00 0.00 0.00 2.69
1042 1066 1.526887 CGCCAGATTGCTTCCCCTA 59.473 57.895 0.00 0.00 0.00 3.53
1043 1067 2.273449 CGCCAGATTGCTTCCCCT 59.727 61.111 0.00 0.00 0.00 4.79
1044 1068 2.830370 CCGCCAGATTGCTTCCCC 60.830 66.667 0.00 0.00 0.00 4.81
1045 1069 2.830370 CCCGCCAGATTGCTTCCC 60.830 66.667 0.00 0.00 0.00 3.97
1046 1070 1.821332 CTCCCGCCAGATTGCTTCC 60.821 63.158 0.00 0.00 0.00 3.46
1047 1071 1.092345 GTCTCCCGCCAGATTGCTTC 61.092 60.000 0.00 0.00 0.00 3.86
1048 1072 1.078143 GTCTCCCGCCAGATTGCTT 60.078 57.895 0.00 0.00 0.00 3.91
1049 1073 2.586792 GTCTCCCGCCAGATTGCT 59.413 61.111 0.00 0.00 0.00 3.91
1050 1074 2.892425 CGTCTCCCGCCAGATTGC 60.892 66.667 0.00 0.00 0.00 3.56
1051 1075 2.202932 CCGTCTCCCGCCAGATTG 60.203 66.667 0.00 0.00 34.38 2.67
1052 1076 3.470888 CCCGTCTCCCGCCAGATT 61.471 66.667 0.00 0.00 34.38 2.40
1067 1091 3.009714 AACTCTTCTCCCGCCCCC 61.010 66.667 0.00 0.00 0.00 5.40
1068 1092 1.627297 ATCAACTCTTCTCCCGCCCC 61.627 60.000 0.00 0.00 0.00 5.80
1069 1093 0.253327 AATCAACTCTTCTCCCGCCC 59.747 55.000 0.00 0.00 0.00 6.13
1070 1094 2.010497 GAAATCAACTCTTCTCCCGCC 58.990 52.381 0.00 0.00 0.00 6.13
1099 1123 2.140839 TTAGTCCTCTCTTCCCCGAC 57.859 55.000 0.00 0.00 0.00 4.79
1111 1135 7.038659 CAGACTCTGAATTCGAAATTAGTCCT 58.961 38.462 18.11 7.69 34.10 3.85
1112 1136 6.814146 ACAGACTCTGAATTCGAAATTAGTCC 59.186 38.462 13.25 6.15 34.10 3.85
1113 1137 7.820044 ACAGACTCTGAATTCGAAATTAGTC 57.180 36.000 13.25 10.99 35.18 2.59
1114 1138 8.499162 CAAACAGACTCTGAATTCGAAATTAGT 58.501 33.333 13.25 1.80 35.18 2.24
1115 1139 7.479916 GCAAACAGACTCTGAATTCGAAATTAG 59.520 37.037 13.25 0.00 35.18 1.73
1116 1140 7.173218 AGCAAACAGACTCTGAATTCGAAATTA 59.827 33.333 13.25 0.00 35.18 1.40
1117 1141 6.016777 AGCAAACAGACTCTGAATTCGAAATT 60.017 34.615 13.25 0.00 35.18 1.82
1122 1146 3.742882 TGAGCAAACAGACTCTGAATTCG 59.257 43.478 13.25 0.00 35.18 3.34
1123 1147 5.679734 TTGAGCAAACAGACTCTGAATTC 57.320 39.130 13.25 0.00 35.18 2.17
1124 1148 6.096001 AGTTTTGAGCAAACAGACTCTGAATT 59.904 34.615 13.25 4.78 46.55 2.17
1125 1149 5.591877 AGTTTTGAGCAAACAGACTCTGAAT 59.408 36.000 13.25 0.00 46.55 2.57
1126 1150 4.943705 AGTTTTGAGCAAACAGACTCTGAA 59.056 37.500 13.25 0.00 46.55 3.02
1127 1151 4.517285 AGTTTTGAGCAAACAGACTCTGA 58.483 39.130 13.25 0.00 46.55 3.27
1128 1152 4.889832 AGTTTTGAGCAAACAGACTCTG 57.110 40.909 4.36 4.36 46.55 3.35
1129 1153 5.904362 AAAGTTTTGAGCAAACAGACTCT 57.096 34.783 0.00 0.00 46.55 3.24
1130 1154 8.634475 ATTAAAAGTTTTGAGCAAACAGACTC 57.366 30.769 11.18 0.00 46.55 3.36
1131 1155 8.250332 TGATTAAAAGTTTTGAGCAAACAGACT 58.750 29.630 11.18 0.00 46.55 3.24
1132 1156 8.321005 GTGATTAAAAGTTTTGAGCAAACAGAC 58.679 33.333 12.01 0.00 46.55 3.51
1133 1157 7.219917 CGTGATTAAAAGTTTTGAGCAAACAGA 59.780 33.333 12.01 0.00 46.55 3.41
1134 1158 7.219917 TCGTGATTAAAAGTTTTGAGCAAACAG 59.780 33.333 12.01 5.66 46.55 3.16
1135 1159 7.030165 TCGTGATTAAAAGTTTTGAGCAAACA 58.970 30.769 12.01 1.00 46.55 2.83
1136 1160 7.444558 TCGTGATTAAAAGTTTTGAGCAAAC 57.555 32.000 12.01 1.71 44.73 2.93
1137 1161 7.381139 GGATCGTGATTAAAAGTTTTGAGCAAA 59.619 33.333 12.01 5.22 0.00 3.68
1138 1162 6.861055 GGATCGTGATTAAAAGTTTTGAGCAA 59.139 34.615 12.01 0.00 0.00 3.91
1139 1163 6.206634 AGGATCGTGATTAAAAGTTTTGAGCA 59.793 34.615 11.18 8.96 0.00 4.26
1140 1164 6.612306 AGGATCGTGATTAAAAGTTTTGAGC 58.388 36.000 11.18 6.27 0.00 4.26
1141 1165 7.119846 AGGAGGATCGTGATTAAAAGTTTTGAG 59.880 37.037 11.18 0.00 34.37 3.02
1142 1166 6.940298 AGGAGGATCGTGATTAAAAGTTTTGA 59.060 34.615 11.18 3.00 34.37 2.69
1143 1167 7.145932 AGGAGGATCGTGATTAAAAGTTTTG 57.854 36.000 11.18 0.00 34.37 2.44
1144 1168 6.374613 GGAGGAGGATCGTGATTAAAAGTTTT 59.625 38.462 6.06 6.06 34.37 2.43
1145 1169 5.880887 GGAGGAGGATCGTGATTAAAAGTTT 59.119 40.000 0.00 0.00 34.37 2.66
1148 1172 4.101741 AGGGAGGAGGATCGTGATTAAAAG 59.898 45.833 0.00 0.00 34.37 2.27
1151 1175 3.330126 AGGGAGGAGGATCGTGATTAA 57.670 47.619 0.00 0.00 34.37 1.40
1158 1182 1.067821 CTTCGAAAGGGAGGAGGATCG 59.932 57.143 0.00 0.00 34.37 3.69
1174 1198 4.328440 CACAAAGCAGACTAATCTCCTTCG 59.672 45.833 0.00 0.00 31.22 3.79
1176 1200 4.583871 CCACAAAGCAGACTAATCTCCTT 58.416 43.478 0.00 0.00 34.13 3.36
1201 1336 3.754323 CCTGTTGTGTTTATTTAGGCCGA 59.246 43.478 0.00 0.00 0.00 5.54
1217 1352 0.908198 CCCTCCTTCTCCTCCTGTTG 59.092 60.000 0.00 0.00 0.00 3.33
1219 1354 1.306568 GCCCTCCTTCTCCTCCTGT 60.307 63.158 0.00 0.00 0.00 4.00
1229 1367 1.077429 GCCTGAAATCGCCCTCCTT 60.077 57.895 0.00 0.00 0.00 3.36
1237 1375 2.176273 CCGAGCTGGCCTGAAATCG 61.176 63.158 14.77 17.35 0.00 3.34
1265 1408 6.061441 TGTACTTTGTTGGATCTGTGACAAT 58.939 36.000 0.00 0.00 32.64 2.71
1281 1424 5.545658 ATGTCTTTGCCGTATGTACTTTG 57.454 39.130 0.00 0.00 0.00 2.77
1284 1427 5.001232 ACAAATGTCTTTGCCGTATGTACT 58.999 37.500 0.00 0.00 44.63 2.73
1294 1437 4.159377 TCGGATCAACAAATGTCTTTGC 57.841 40.909 0.00 0.00 44.63 3.68
1315 1482 5.623824 GCTTTTGTTCTTCATGGCTGATGAT 60.624 40.000 0.00 0.00 40.92 2.45
1316 1483 4.321452 GCTTTTGTTCTTCATGGCTGATGA 60.321 41.667 0.00 0.00 39.47 2.92
1317 1484 3.924686 GCTTTTGTTCTTCATGGCTGATG 59.075 43.478 0.00 0.00 0.00 3.07
1497 3480 1.467920 GGCAGATTGCTAAGCCTGTT 58.532 50.000 0.67 0.00 44.28 3.16
1574 3557 2.494471 CAATTGCTTGGAGAGGATGCAA 59.506 45.455 0.00 0.00 45.62 4.08
1618 3601 3.585862 CTGAAAGTTAGGTAGAAGCGCA 58.414 45.455 11.47 0.00 0.00 6.09
1739 3770 7.168219 AGTTATCAGGCAACAAGACAAATCTA 58.832 34.615 0.00 0.00 41.41 1.98
1761 3792 4.782156 AGATCTTCCAATGGTGAGAGAGTT 59.218 41.667 12.10 0.00 0.00 3.01
1892 3923 6.996509 AGCACCAAATAAATCATTGAACTGT 58.003 32.000 0.00 0.00 0.00 3.55
1951 3982 4.220382 CACCAAACCTCATATTTTCCAGCA 59.780 41.667 0.00 0.00 0.00 4.41
1991 4182 1.377536 GCTTGGAAGTGCTGAGGATC 58.622 55.000 0.00 0.00 0.00 3.36
2109 4327 2.944349 TCAACCGTTGGAGTTTTGGTAC 59.056 45.455 11.35 0.00 31.36 3.34
2271 4492 0.964700 TCCAGATGCAGATCGCCTAG 59.035 55.000 0.00 0.00 41.33 3.02
2431 4932 1.436195 TTGTTGAGCACAGGCGTGAC 61.436 55.000 14.38 4.75 46.80 3.67
2452 4953 4.979335 TGGTCCAGATTCACATGTTGTAA 58.021 39.130 0.00 0.00 0.00 2.41
2522 5023 2.062636 ACTCTTTTAGGGAGGGTGCAA 58.937 47.619 0.00 0.00 35.34 4.08
2542 5043 0.182299 TCCCACACTGTGATGCACAA 59.818 50.000 15.86 0.00 44.08 3.33
2723 5227 3.081061 TGTTCCACAACACATCCTATGC 58.919 45.455 0.00 0.00 37.61 3.14
2777 5281 2.908073 CGCCCACACACCTTTCTGC 61.908 63.158 0.00 0.00 0.00 4.26
2798 5304 2.837947 TCTCAGGATCCAAGTCACCAT 58.162 47.619 15.82 0.00 0.00 3.55
2974 5480 8.723942 AGTGATCTAAACATCCTACATTTGTC 57.276 34.615 0.00 0.00 0.00 3.18
3011 5517 7.572759 TCTGTAAAGAAATGCAGACGTTTTAG 58.427 34.615 0.00 0.00 35.12 1.85
3077 5584 7.554118 TCATCAACTCCTTCCATTTATGAAGAC 59.446 37.037 1.74 0.00 0.00 3.01
3081 5588 7.890127 ACTTTCATCAACTCCTTCCATTTATGA 59.110 33.333 0.00 0.00 0.00 2.15
3087 5594 7.671398 ACAATAACTTTCATCAACTCCTTCCAT 59.329 33.333 0.00 0.00 0.00 3.41
3153 5660 5.882040 TCACAAACACCATAATACTTCCCA 58.118 37.500 0.00 0.00 0.00 4.37
3164 5671 2.494471 CAGGATGCATCACAAACACCAT 59.506 45.455 27.25 0.00 0.00 3.55
3274 5781 6.321717 CACGTACCATTGCAATAAATTGTCT 58.678 36.000 12.53 0.00 39.88 3.41
3293 5800 4.576873 TCAAAAGGAACATCAAAGCACGTA 59.423 37.500 0.00 0.00 0.00 3.57
3295 5802 3.963665 TCAAAAGGAACATCAAAGCACG 58.036 40.909 0.00 0.00 0.00 5.34
3414 5921 5.983118 GGTTTGTCAGAAAAATACCCAAGTG 59.017 40.000 0.00 0.00 0.00 3.16
3421 5928 6.017109 TGCTCTCTGGTTTGTCAGAAAAATAC 60.017 38.462 0.00 0.00 42.46 1.89
3424 5931 4.269183 TGCTCTCTGGTTTGTCAGAAAAA 58.731 39.130 0.00 0.00 42.46 1.94
3446 5953 4.993705 TCCTTGGGTAATTCTCTGTGTT 57.006 40.909 0.00 0.00 0.00 3.32
3454 5961 8.418662 AGTGTAAAAACTTTCCTTGGGTAATTC 58.581 33.333 0.00 0.00 0.00 2.17
3525 6032 9.064706 TGGATAATTTTTAGTGTCCGTTGTAAA 57.935 29.630 0.00 0.00 0.00 2.01
3533 6040 9.140286 GCTTTCTTTGGATAATTTTTAGTGTCC 57.860 33.333 0.00 0.00 0.00 4.02
3554 6061 8.290325 AGCATAAGTTGTAGTGTAAAAGCTTTC 58.710 33.333 13.10 1.15 0.00 2.62
3594 6104 3.763671 GGCACAAACCCACTCTGG 58.236 61.111 0.00 0.00 37.25 3.86
3604 6114 2.392662 TCAAAACATCCAGGGCACAAA 58.607 42.857 0.00 0.00 0.00 2.83
3813 6325 4.158764 GCAGTCTGTCTTACATAGTGTCCT 59.841 45.833 0.93 0.00 30.88 3.85
3821 6333 6.639632 AACAAATTGCAGTCTGTCTTACAT 57.360 33.333 0.93 0.00 0.00 2.29
3827 6339 6.017934 TCAGAACTAACAAATTGCAGTCTGTC 60.018 38.462 16.96 8.02 0.00 3.51
3841 6353 6.578944 TGTAAGAAGTGCTTCAGAACTAACA 58.421 36.000 13.58 4.93 41.84 2.41
3888 6400 7.201705 GCAGAACTTGTAGTGTAAAGTCCTTTT 60.202 37.037 0.00 0.00 35.60 2.27
3908 6420 5.118990 TGCCATCAAGTTATCTAGCAGAAC 58.881 41.667 0.00 0.00 0.00 3.01
3924 6436 3.689347 AGTGCTTCAGTATTTGCCATCA 58.311 40.909 0.00 0.00 0.00 3.07
3932 6444 9.453572 TCAAGAATAAATGAGTGCTTCAGTATT 57.546 29.630 8.74 8.74 39.68 1.89
3951 6463 2.182842 GCTCCGCGCCATCAAGAAT 61.183 57.895 0.00 0.00 0.00 2.40
3963 6475 0.521735 CAAAGTTACCAAGGCTCCGC 59.478 55.000 0.00 0.00 0.00 5.54
3964 6476 1.165270 CCAAAGTTACCAAGGCTCCG 58.835 55.000 0.00 0.00 0.00 4.63
3966 6478 1.269723 GTGCCAAAGTTACCAAGGCTC 59.730 52.381 10.11 4.15 45.42 4.70
3973 6485 1.445871 CTACCGGTGCCAAAGTTACC 58.554 55.000 19.93 0.00 0.00 2.85
3979 6491 0.912487 AGGATCCTACCGGTGCCAAA 60.912 55.000 19.93 0.00 34.73 3.28
3994 6506 0.618968 AGGGCGTGGAGAAGAAGGAT 60.619 55.000 0.00 0.00 0.00 3.24
4022 6534 2.423185 TGAGACAAACTGTTGCTGTTGG 59.577 45.455 0.00 0.00 38.39 3.77
4059 6577 0.979187 CTACCCTCCCTTTGGCCGTA 60.979 60.000 0.00 0.00 0.00 4.02
4068 6586 3.248248 TTCGCCACCTACCCTCCCT 62.248 63.158 0.00 0.00 0.00 4.20
4069 6587 2.686106 TTCGCCACCTACCCTCCC 60.686 66.667 0.00 0.00 0.00 4.30
4083 6601 1.442769 CATGGTTGTGGAGACCTTCG 58.557 55.000 0.00 0.00 38.04 3.79
4108 6626 3.119029 CCATTGTGAACATGATTCCCACC 60.119 47.826 0.00 0.00 0.00 4.61
4120 6638 2.821969 AGGTGATTCTGCCATTGTGAAC 59.178 45.455 0.00 0.00 0.00 3.18
4168 6694 6.766944 GTGTAGTAGACATCAGTAAGGAGCTA 59.233 42.308 0.00 0.00 41.14 3.32
4179 6705 6.493802 AGAAGAAGGTTGTGTAGTAGACATCA 59.506 38.462 0.29 0.00 41.14 3.07
4180 6706 6.926313 AGAAGAAGGTTGTGTAGTAGACATC 58.074 40.000 0.29 0.61 41.14 3.06
4181 6707 6.919775 AGAAGAAGGTTGTGTAGTAGACAT 57.080 37.500 0.29 0.00 41.14 3.06
4182 6708 6.097839 ACAAGAAGAAGGTTGTGTAGTAGACA 59.902 38.462 0.00 0.00 35.55 3.41
4183 6709 6.514063 ACAAGAAGAAGGTTGTGTAGTAGAC 58.486 40.000 0.00 0.00 35.55 2.59
4184 6710 6.726490 ACAAGAAGAAGGTTGTGTAGTAGA 57.274 37.500 0.00 0.00 35.55 2.59
4185 6711 7.808856 GTCTACAAGAAGAAGGTTGTGTAGTAG 59.191 40.741 8.12 0.00 39.49 2.57
4186 6712 7.521099 CGTCTACAAGAAGAAGGTTGTGTAGTA 60.521 40.741 8.12 0.00 39.49 1.82
4187 6713 6.514063 GTCTACAAGAAGAAGGTTGTGTAGT 58.486 40.000 8.12 0.00 39.49 2.73
4188 6714 5.629849 CGTCTACAAGAAGAAGGTTGTGTAG 59.370 44.000 0.00 0.00 39.72 2.74
4189 6715 5.526115 CGTCTACAAGAAGAAGGTTGTGTA 58.474 41.667 0.00 0.00 37.46 2.90
4190 6716 4.369182 CGTCTACAAGAAGAAGGTTGTGT 58.631 43.478 0.00 0.00 37.46 3.72
4191 6717 4.974103 CGTCTACAAGAAGAAGGTTGTG 57.026 45.455 0.00 0.00 37.46 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.