Multiple sequence alignment - TraesCS6A01G357800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G357800 chr6A 100.000 3600 0 0 1 3600 587896344 587892745 0.000000e+00 6649.0
1 TraesCS6A01G357800 chr6A 89.008 1310 109 17 812 2104 587967250 587968541 0.000000e+00 1589.0
2 TraesCS6A01G357800 chr6A 90.619 533 33 2 2083 2606 587968267 587968791 0.000000e+00 691.0
3 TraesCS6A01G357800 chr6A 80.952 588 83 14 3021 3599 587969166 587969733 4.270000e-119 438.0
4 TraesCS6A01G357800 chr6A 80.783 281 36 11 1828 2100 587894254 587893984 1.690000e-48 204.0
5 TraesCS6A01G357800 chr6A 97.561 41 1 0 2622 2662 144488337 144488377 1.790000e-08 71.3
6 TraesCS6A01G357800 chr6D 89.144 1308 103 19 808 2100 439621030 439619747 0.000000e+00 1592.0
7 TraesCS6A01G357800 chr6D 87.758 1307 121 23 808 2092 439655239 439656528 0.000000e+00 1491.0
8 TraesCS6A01G357800 chr6D 94.186 602 27 3 3007 3600 439619155 439618554 0.000000e+00 911.0
9 TraesCS6A01G357800 chr6D 89.184 527 43 5 2084 2606 439656265 439656781 0.000000e+00 645.0
10 TraesCS6A01G357800 chr6D 85.826 642 47 25 1 600 439621771 439621132 3.030000e-180 641.0
11 TraesCS6A01G357800 chr6D 92.784 388 28 0 2231 2618 439619877 439619490 2.430000e-156 562.0
12 TraesCS6A01G357800 chr6D 83.849 582 79 7 3020 3599 439659486 439660054 1.140000e-149 540.0
13 TraesCS6A01G357800 chr6D 90.406 271 17 4 2741 3007 439619454 439619189 7.400000e-92 348.0
14 TraesCS6A01G357800 chr6D 79.235 366 37 15 2828 3182 439615476 439615139 6.050000e-53 219.0
15 TraesCS6A01G357800 chr6D 95.349 43 2 0 2622 2664 94272859 94272817 6.450000e-08 69.4
16 TraesCS6A01G357800 chr6B 87.595 1314 112 28 812 2104 664520255 664521538 0.000000e+00 1476.0
17 TraesCS6A01G357800 chr6B 88.506 1044 78 16 812 1844 664500015 664501027 0.000000e+00 1225.0
18 TraesCS6A01G357800 chr6B 93.857 586 30 3 3020 3600 664480490 664479906 0.000000e+00 878.0
19 TraesCS6A01G357800 chr6B 89.264 503 45 6 2106 2604 664501222 664501719 3.950000e-174 621.0
20 TraesCS6A01G357800 chr6B 89.080 522 28 7 2097 2606 664521287 664521791 3.950000e-174 621.0
21 TraesCS6A01G357800 chr6B 80.895 581 79 16 3028 3599 664522124 664522681 2.570000e-116 429.0
22 TraesCS6A01G357800 chr6B 92.884 267 19 0 2741 3007 664492597 664492331 4.360000e-104 388.0
23 TraesCS6A01G357800 chr6B 80.237 253 39 8 1852 2100 664501231 664501476 2.860000e-41 180.0
24 TraesCS6A01G357800 chr2D 93.243 148 8 2 656 802 111568648 111568502 2.180000e-52 217.0
25 TraesCS6A01G357800 chr2D 92.157 153 10 2 651 802 252347373 252347222 7.830000e-52 215.0
26 TraesCS6A01G357800 chr2D 92.105 152 10 2 652 802 245373286 245373136 2.820000e-51 213.0
27 TraesCS6A01G357800 chr2D 91.391 151 12 1 652 802 512462863 512462714 4.710000e-49 206.0
28 TraesCS6A01G357800 chr5D 92.105 152 10 2 652 802 393904406 393904556 2.820000e-51 213.0
29 TraesCS6A01G357800 chr5D 95.349 43 2 0 2622 2664 377106221 377106179 6.450000e-08 69.4
30 TraesCS6A01G357800 chrUn 91.447 152 10 3 652 802 332494574 332494723 4.710000e-49 206.0
31 TraesCS6A01G357800 chrUn 91.447 152 10 3 652 802 378449490 378449341 4.710000e-49 206.0
32 TraesCS6A01G357800 chrUn 85.526 76 10 1 2931 3005 86970761 86970836 1.070000e-10 78.7
33 TraesCS6A01G357800 chr5B 91.447 152 10 3 652 802 392055239 392055090 4.710000e-49 206.0
34 TraesCS6A01G357800 chr7D 90.728 151 13 1 652 802 583063498 583063349 2.190000e-47 200.0
35 TraesCS6A01G357800 chr2B 86.364 88 8 4 2922 3006 721137238 721137152 3.830000e-15 93.5
36 TraesCS6A01G357800 chr2B 87.013 77 7 3 2931 3005 472909705 472909630 2.300000e-12 84.2
37 TraesCS6A01G357800 chr2B 85.333 75 11 0 2931 3005 560893468 560893394 1.070000e-10 78.7
38 TraesCS6A01G357800 chr4B 85.333 75 11 0 2931 3005 93286536 93286610 1.070000e-10 78.7
39 TraesCS6A01G357800 chr4B 85.135 74 11 0 2931 3004 28618543 28618470 3.850000e-10 76.8
40 TraesCS6A01G357800 chr4B 97.561 41 1 0 2622 2662 600515034 600515074 1.790000e-08 71.3
41 TraesCS6A01G357800 chr3A 86.111 72 10 0 2934 3005 420334929 420335000 1.070000e-10 78.7
42 TraesCS6A01G357800 chr3A 97.674 43 1 0 2622 2664 103020966 103020924 1.390000e-09 75.0
43 TraesCS6A01G357800 chr3A 97.561 41 1 0 2622 2662 383415734 383415774 1.790000e-08 71.3
44 TraesCS6A01G357800 chr3D 97.561 41 1 0 2622 2662 295303201 295303241 1.790000e-08 71.3
45 TraesCS6A01G357800 chr3D 97.561 41 1 0 2622 2662 313051076 313051116 1.790000e-08 71.3
46 TraesCS6A01G357800 chr3B 97.561 41 1 0 2622 2662 452766380 452766420 1.790000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G357800 chr6A 587892745 587896344 3599 True 3426.500000 6649 90.391500 1 3600 2 chr6A.!!$R1 3599
1 TraesCS6A01G357800 chr6A 587967250 587969733 2483 False 906.000000 1589 86.859667 812 3599 3 chr6A.!!$F2 2787
2 TraesCS6A01G357800 chr6D 439655239 439660054 4815 False 892.000000 1491 86.930333 808 3599 3 chr6D.!!$F1 2791
3 TraesCS6A01G357800 chr6D 439615139 439621771 6632 True 712.166667 1592 88.596833 1 3600 6 chr6D.!!$R2 3599
4 TraesCS6A01G357800 chr6B 664479906 664480490 584 True 878.000000 878 93.857000 3020 3600 1 chr6B.!!$R1 580
5 TraesCS6A01G357800 chr6B 664520255 664522681 2426 False 842.000000 1476 85.856667 812 3599 3 chr6B.!!$F2 2787
6 TraesCS6A01G357800 chr6B 664500015 664501719 1704 False 675.333333 1225 86.002333 812 2604 3 chr6B.!!$F1 1792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 830 0.719465 CGGGATCATTAATACGCCGC 59.281 55.0 0.0 0.0 0.0 6.53 F
2100 2389 0.034380 AACGAGGAGGACGATGAGGA 60.034 55.0 0.0 0.0 34.7 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2245 2534 0.030101 CCGAGGAGATGTCGCTCTTC 59.970 60.000 0.00 0.00 37.58 2.87 R
3165 5983 1.227002 GTCAAGGGTCGAGCGATCC 60.227 63.158 14.07 14.07 45.49 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 3.222603 GCCTTGGATAATCATTTCGGGT 58.777 45.455 0.00 0.00 0.00 5.28
67 68 1.608801 GCCAACATCCAAAGCCAAAGG 60.609 52.381 0.00 0.00 0.00 3.11
73 74 1.259609 TCCAAAGCCAAAGGAGCATG 58.740 50.000 0.00 0.00 0.00 4.06
77 78 1.251251 AAGCCAAAGGAGCATGACAC 58.749 50.000 0.00 0.00 0.00 3.67
80 81 1.615392 GCCAAAGGAGCATGACACTTT 59.385 47.619 0.00 0.00 33.76 2.66
116 117 2.036475 ACGCTAGAAGGTATCATGGCAG 59.964 50.000 0.00 0.00 0.00 4.85
122 123 3.976654 AGAAGGTATCATGGCAGGTGTAT 59.023 43.478 0.00 0.00 0.00 2.29
183 191 5.415701 GCAAATGGAGTCTTGATTTACCTGA 59.584 40.000 0.00 0.00 0.00 3.86
185 193 4.553330 TGGAGTCTTGATTTACCTGACC 57.447 45.455 0.00 0.00 0.00 4.02
187 195 4.020218 TGGAGTCTTGATTTACCTGACCAG 60.020 45.833 0.00 0.00 0.00 4.00
194 202 5.235850 TGATTTACCTGACCAGCAACTTA 57.764 39.130 0.00 0.00 0.00 2.24
206 214 7.047891 TGACCAGCAACTTATTCATAGGTAAG 58.952 38.462 0.00 0.00 34.78 2.34
290 299 6.539649 TGTCACACAGTTCTAATTGTAAGC 57.460 37.500 0.00 0.00 0.00 3.09
291 300 5.468746 TGTCACACAGTTCTAATTGTAAGCC 59.531 40.000 0.00 0.00 0.00 4.35
293 302 6.149474 GTCACACAGTTCTAATTGTAAGCCAT 59.851 38.462 0.00 0.00 0.00 4.40
298 307 8.768955 CACAGTTCTAATTGTAAGCCATCTATC 58.231 37.037 0.00 0.00 0.00 2.08
300 309 9.499479 CAGTTCTAATTGTAAGCCATCTATCAT 57.501 33.333 0.00 0.00 0.00 2.45
306 315 4.383173 TGTAAGCCATCTATCATGTGCAG 58.617 43.478 0.00 0.00 0.00 4.41
307 316 3.851458 AAGCCATCTATCATGTGCAGA 57.149 42.857 0.00 0.00 0.00 4.26
319 328 4.631131 TCATGTGCAGATTATAGAACCCG 58.369 43.478 0.00 0.00 0.00 5.28
325 335 6.437477 TGTGCAGATTATAGAACCCGAGATAT 59.563 38.462 0.00 0.00 0.00 1.63
357 367 4.522114 TGATATTCCGCTTCAATCAACCA 58.478 39.130 0.00 0.00 0.00 3.67
404 415 7.301068 TGATTTCTTTTTGTTTGTGCGAAAT 57.699 28.000 0.00 0.00 33.72 2.17
409 420 4.831741 TTTTGTTTGTGCGAAATGTGTC 57.168 36.364 0.00 0.00 0.00 3.67
456 469 6.345096 TGAAAATGAGAAACCCCTCAATTC 57.655 37.500 0.00 0.00 45.22 2.17
475 488 2.503331 TCGGCAAAGATTCTGCTTCAA 58.497 42.857 0.00 0.00 39.82 2.69
477 490 2.415090 CGGCAAAGATTCTGCTTCAAGG 60.415 50.000 0.00 0.00 39.82 3.61
478 491 2.603953 GCAAAGATTCTGCTTCAAGGC 58.396 47.619 0.00 0.00 36.84 4.35
488 531 0.944386 GCTTCAAGGCGTTGTCTGAA 59.056 50.000 17.96 5.20 34.98 3.02
491 534 3.188460 GCTTCAAGGCGTTGTCTGAATTA 59.812 43.478 17.96 0.00 34.98 1.40
496 539 6.744112 TCAAGGCGTTGTCTGAATTATTTTT 58.256 32.000 17.96 0.00 34.98 1.94
547 590 7.458397 TGTATCAACTCTCAACCCTTACAAAT 58.542 34.615 0.00 0.00 0.00 2.32
548 591 7.606456 TGTATCAACTCTCAACCCTTACAAATC 59.394 37.037 0.00 0.00 0.00 2.17
556 599 7.004086 TCTCAACCCTTACAAATCAGAATTGT 58.996 34.615 8.90 8.90 43.14 2.71
557 600 8.160765 TCTCAACCCTTACAAATCAGAATTGTA 58.839 33.333 6.94 6.94 41.11 2.41
564 607 9.612620 CCTTACAAATCAGAATTGTACAAACTC 57.387 33.333 13.23 12.09 41.55 3.01
578 621 1.056660 AAACTCATCACGGAGGTGGT 58.943 50.000 0.00 0.00 44.50 4.16
600 643 6.984474 TGGTACACTTCAAACTCAAAGAGTAG 59.016 38.462 0.00 0.00 42.59 2.57
602 645 7.873505 GGTACACTTCAAACTCAAAGAGTAGAT 59.126 37.037 0.00 0.00 42.59 1.98
605 648 9.832445 ACACTTCAAACTCAAAGAGTAGATTAA 57.168 29.630 0.00 0.00 42.59 1.40
630 689 6.641176 AAAAATCAAACGCCGGAAATTATC 57.359 33.333 5.05 0.00 0.00 1.75
643 702 6.371809 CGGAAATTATCGGGAAGATTTGAA 57.628 37.500 0.00 0.00 40.66 2.69
667 726 6.394345 AAAACATTACTCCCTCCATTCTCT 57.606 37.500 0.00 0.00 0.00 3.10
669 728 7.510675 AAACATTACTCCCTCCATTCTCTTA 57.489 36.000 0.00 0.00 0.00 2.10
670 729 7.698163 AACATTACTCCCTCCATTCTCTTAT 57.302 36.000 0.00 0.00 0.00 1.73
671 730 8.798975 AACATTACTCCCTCCATTCTCTTATA 57.201 34.615 0.00 0.00 0.00 0.98
674 733 8.651389 CATTACTCCCTCCATTCTCTTATACAA 58.349 37.037 0.00 0.00 0.00 2.41
675 734 6.739331 ACTCCCTCCATTCTCTTATACAAG 57.261 41.667 0.00 0.00 0.00 3.16
676 735 5.604650 ACTCCCTCCATTCTCTTATACAAGG 59.395 44.000 0.00 0.00 32.22 3.61
677 736 4.348168 TCCCTCCATTCTCTTATACAAGGC 59.652 45.833 0.00 0.00 32.22 4.35
679 738 4.103153 CCTCCATTCTCTTATACAAGGCCA 59.897 45.833 5.01 0.00 32.22 5.36
680 739 5.036117 TCCATTCTCTTATACAAGGCCAC 57.964 43.478 5.01 0.00 32.22 5.01
681 740 4.473196 TCCATTCTCTTATACAAGGCCACA 59.527 41.667 5.01 0.00 32.22 4.17
684 743 6.404734 CCATTCTCTTATACAAGGCCACAAAC 60.405 42.308 5.01 0.00 32.22 2.93
686 745 5.488341 TCTCTTATACAAGGCCACAAACTC 58.512 41.667 5.01 0.00 32.22 3.01
687 746 5.012664 TCTCTTATACAAGGCCACAAACTCA 59.987 40.000 5.01 0.00 32.22 3.41
689 748 6.065374 TCTTATACAAGGCCACAAACTCAAA 58.935 36.000 5.01 0.00 32.22 2.69
690 749 6.719370 TCTTATACAAGGCCACAAACTCAAAT 59.281 34.615 5.01 0.00 32.22 2.32
691 750 5.806654 ATACAAGGCCACAAACTCAAATT 57.193 34.783 5.01 0.00 0.00 1.82
692 751 6.909550 ATACAAGGCCACAAACTCAAATTA 57.090 33.333 5.01 0.00 0.00 1.40
693 752 4.944048 ACAAGGCCACAAACTCAAATTAC 58.056 39.130 5.01 0.00 0.00 1.89
694 753 4.404073 ACAAGGCCACAAACTCAAATTACA 59.596 37.500 5.01 0.00 0.00 2.41
695 754 4.853924 AGGCCACAAACTCAAATTACAG 57.146 40.909 5.01 0.00 0.00 2.74
696 755 3.573967 AGGCCACAAACTCAAATTACAGG 59.426 43.478 5.01 0.00 0.00 4.00
697 756 3.320826 GGCCACAAACTCAAATTACAGGT 59.679 43.478 0.00 0.00 0.00 4.00
698 757 4.521256 GGCCACAAACTCAAATTACAGGTA 59.479 41.667 0.00 0.00 0.00 3.08
699 758 5.458015 GCCACAAACTCAAATTACAGGTAC 58.542 41.667 0.00 0.00 0.00 3.34
700 759 5.564063 GCCACAAACTCAAATTACAGGTACC 60.564 44.000 2.73 2.73 0.00 3.34
701 760 5.533154 CCACAAACTCAAATTACAGGTACCA 59.467 40.000 15.94 0.00 0.00 3.25
702 761 6.039941 CCACAAACTCAAATTACAGGTACCAA 59.960 38.462 15.94 0.00 0.00 3.67
703 762 7.138736 CACAAACTCAAATTACAGGTACCAAG 58.861 38.462 15.94 8.83 0.00 3.61
704 763 7.012894 CACAAACTCAAATTACAGGTACCAAGA 59.987 37.037 15.94 0.00 0.00 3.02
705 764 7.724061 ACAAACTCAAATTACAGGTACCAAGAT 59.276 33.333 15.94 0.00 0.00 2.40
706 765 9.226606 CAAACTCAAATTACAGGTACCAAGATA 57.773 33.333 15.94 0.00 0.00 1.98
707 766 9.802039 AAACTCAAATTACAGGTACCAAGATAA 57.198 29.630 15.94 7.12 0.00 1.75
708 767 9.802039 AACTCAAATTACAGGTACCAAGATAAA 57.198 29.630 15.94 4.69 0.00 1.40
709 768 9.802039 ACTCAAATTACAGGTACCAAGATAAAA 57.198 29.630 15.94 0.00 0.00 1.52
733 792 9.545105 AAATTTAATGACTGATTTTGCAAGTCA 57.455 25.926 17.95 17.95 42.57 3.41
734 793 9.545105 AATTTAATGACTGATTTTGCAAGTCAA 57.455 25.926 19.17 3.53 41.85 3.18
735 794 9.715121 ATTTAATGACTGATTTTGCAAGTCAAT 57.285 25.926 19.17 14.54 41.85 2.57
736 795 9.545105 TTTAATGACTGATTTTGCAAGTCAATT 57.455 25.926 19.17 15.40 41.85 2.32
739 798 9.715121 AATGACTGATTTTGCAAGTCAATTATT 57.285 25.926 19.17 13.28 41.85 1.40
740 799 8.746922 TGACTGATTTTGCAAGTCAATTATTC 57.253 30.769 14.31 6.61 36.69 1.75
741 800 8.579006 TGACTGATTTTGCAAGTCAATTATTCT 58.421 29.630 14.31 0.00 36.69 2.40
742 801 9.415544 GACTGATTTTGCAAGTCAATTATTCTT 57.584 29.630 14.89 0.00 34.12 2.52
743 802 9.768662 ACTGATTTTGCAAGTCAATTATTCTTT 57.231 25.926 14.89 0.00 34.12 2.52
746 805 9.731519 GATTTTGCAAGTCAATTATTCTTTTCG 57.268 29.630 0.00 0.00 34.12 3.46
747 806 8.641499 TTTTGCAAGTCAATTATTCTTTTCGT 57.359 26.923 0.00 0.00 34.12 3.85
748 807 8.641499 TTTGCAAGTCAATTATTCTTTTCGTT 57.359 26.923 0.00 0.00 34.12 3.85
749 808 9.737427 TTTGCAAGTCAATTATTCTTTTCGTTA 57.263 25.926 0.00 0.00 34.12 3.18
750 809 8.948853 TGCAAGTCAATTATTCTTTTCGTTAG 57.051 30.769 0.00 0.00 0.00 2.34
751 810 8.564574 TGCAAGTCAATTATTCTTTTCGTTAGT 58.435 29.630 0.00 0.00 0.00 2.24
752 811 9.052080 GCAAGTCAATTATTCTTTTCGTTAGTC 57.948 33.333 0.00 0.00 0.00 2.59
753 812 9.250986 CAAGTCAATTATTCTTTTCGTTAGTCG 57.749 33.333 0.00 0.00 41.41 4.18
754 813 7.960793 AGTCAATTATTCTTTTCGTTAGTCGG 58.039 34.615 0.00 0.00 40.32 4.79
755 814 7.064253 AGTCAATTATTCTTTTCGTTAGTCGGG 59.936 37.037 0.00 0.00 40.32 5.14
756 815 7.063780 GTCAATTATTCTTTTCGTTAGTCGGGA 59.936 37.037 0.00 0.00 40.32 5.14
757 816 7.767198 TCAATTATTCTTTTCGTTAGTCGGGAT 59.233 33.333 0.00 0.00 40.32 3.85
758 817 7.710766 ATTATTCTTTTCGTTAGTCGGGATC 57.289 36.000 0.00 0.00 40.32 3.36
759 818 4.524316 TTCTTTTCGTTAGTCGGGATCA 57.476 40.909 0.00 0.00 40.32 2.92
760 819 4.730949 TCTTTTCGTTAGTCGGGATCAT 57.269 40.909 0.00 0.00 40.32 2.45
761 820 5.080969 TCTTTTCGTTAGTCGGGATCATT 57.919 39.130 0.00 0.00 40.32 2.57
762 821 6.211587 TCTTTTCGTTAGTCGGGATCATTA 57.788 37.500 0.00 0.00 40.32 1.90
763 822 6.632909 TCTTTTCGTTAGTCGGGATCATTAA 58.367 36.000 0.00 0.00 40.32 1.40
764 823 7.270047 TCTTTTCGTTAGTCGGGATCATTAAT 58.730 34.615 0.00 0.00 40.32 1.40
765 824 8.415553 TCTTTTCGTTAGTCGGGATCATTAATA 58.584 33.333 0.00 0.00 40.32 0.98
766 825 7.935338 TTTCGTTAGTCGGGATCATTAATAC 57.065 36.000 0.00 0.00 40.32 1.89
767 826 5.692814 TCGTTAGTCGGGATCATTAATACG 58.307 41.667 0.00 0.00 40.32 3.06
768 827 4.322804 CGTTAGTCGGGATCATTAATACGC 59.677 45.833 0.00 0.00 35.71 4.42
769 828 3.314541 AGTCGGGATCATTAATACGCC 57.685 47.619 0.00 0.00 0.00 5.68
770 829 1.990563 GTCGGGATCATTAATACGCCG 59.009 52.381 0.00 0.00 0.00 6.46
771 830 0.719465 CGGGATCATTAATACGCCGC 59.281 55.000 0.00 0.00 0.00 6.53
772 831 1.803334 GGGATCATTAATACGCCGCA 58.197 50.000 0.00 0.00 0.00 5.69
773 832 2.356135 GGGATCATTAATACGCCGCAT 58.644 47.619 0.00 0.00 0.00 4.73
774 833 2.095853 GGGATCATTAATACGCCGCATG 59.904 50.000 0.00 0.00 0.00 4.06
775 834 2.476185 GGATCATTAATACGCCGCATGC 60.476 50.000 7.91 7.91 0.00 4.06
776 835 1.587547 TCATTAATACGCCGCATGCA 58.412 45.000 19.57 0.00 41.33 3.96
777 836 2.150390 TCATTAATACGCCGCATGCAT 58.850 42.857 19.57 0.00 41.33 3.96
778 837 2.095819 TCATTAATACGCCGCATGCATG 60.096 45.455 22.70 22.70 41.33 4.06
801 860 3.308035 AAAAAGGAACGGGAAGGAAGT 57.692 42.857 0.00 0.00 0.00 3.01
802 861 3.308035 AAAAGGAACGGGAAGGAAGTT 57.692 42.857 0.00 0.00 0.00 2.66
803 862 2.271944 AAGGAACGGGAAGGAAGTTG 57.728 50.000 0.00 0.00 0.00 3.16
804 863 1.137697 AGGAACGGGAAGGAAGTTGT 58.862 50.000 0.00 0.00 0.00 3.32
805 864 2.332117 AGGAACGGGAAGGAAGTTGTA 58.668 47.619 0.00 0.00 0.00 2.41
806 865 2.038164 AGGAACGGGAAGGAAGTTGTAC 59.962 50.000 0.00 0.00 0.00 2.90
807 866 2.038164 GGAACGGGAAGGAAGTTGTACT 59.962 50.000 0.00 0.00 0.00 2.73
808 867 3.259123 GGAACGGGAAGGAAGTTGTACTA 59.741 47.826 0.00 0.00 0.00 1.82
809 868 4.492611 GAACGGGAAGGAAGTTGTACTAG 58.507 47.826 0.00 0.00 0.00 2.57
810 869 2.233186 ACGGGAAGGAAGTTGTACTAGC 59.767 50.000 0.00 0.00 0.00 3.42
900 960 1.646367 TAAACCCCACACTGCCCACA 61.646 55.000 0.00 0.00 0.00 4.17
922 982 9.284968 CCACAATTTCCGTCTCCTTATAAATAT 57.715 33.333 0.00 0.00 0.00 1.28
986 1054 2.751436 ATTGCCGCGCCATTCAGT 60.751 55.556 0.00 0.00 0.00 3.41
1009 1077 0.381445 TCGATCGCAAATGGCAATGG 59.619 50.000 11.09 0.00 45.17 3.16
1013 1081 1.097232 TCGCAAATGGCAATGGAGAG 58.903 50.000 0.00 0.00 45.17 3.20
1027 1095 3.296709 GAGAGGAGCACGGCGGAAA 62.297 63.158 13.24 0.00 0.00 3.13
1133 1201 3.592814 CAGGATCCGGCGCGAGTA 61.593 66.667 12.10 0.00 0.00 2.59
1265 1336 2.439883 GGACGCCGTAGAGGAGGT 60.440 66.667 0.00 0.00 44.78 3.85
1397 1478 0.251121 TTGGCGTTGATGGTGATGGT 60.251 50.000 0.00 0.00 0.00 3.55
1576 1657 1.003839 GGCTGGTGATGGACGTCAA 60.004 57.895 18.91 6.46 0.00 3.18
1622 1703 2.338984 GACTTGTCTGACGGCGGT 59.661 61.111 13.24 0.00 0.00 5.68
1637 1718 2.202570 GGTCATGTCGACGACGGG 60.203 66.667 22.06 16.31 46.42 5.28
1669 1750 1.999735 CAAGGAGCGCATCGTCTTTAA 59.000 47.619 11.47 0.00 0.00 1.52
1670 1751 1.927895 AGGAGCGCATCGTCTTTAAG 58.072 50.000 11.47 0.00 0.00 1.85
1801 1882 4.996976 GCTCGAGGCTGAACTGAA 57.003 55.556 15.58 0.00 38.06 3.02
1812 1893 2.670934 AACTGAAGCGCCTGCAGG 60.671 61.111 29.34 29.34 41.28 4.85
1834 1915 1.642037 GACTCCGACCACGACGATGA 61.642 60.000 0.00 0.00 42.66 2.92
1841 1922 0.611062 ACCACGACGATGAGGAGGAA 60.611 55.000 0.00 0.00 0.00 3.36
1842 1923 0.747255 CCACGACGATGAGGAGGAAT 59.253 55.000 0.00 0.00 0.00 3.01
1843 1924 1.536922 CCACGACGATGAGGAGGAATG 60.537 57.143 0.00 0.00 0.00 2.67
1844 1925 1.135139 CACGACGATGAGGAGGAATGT 59.865 52.381 0.00 0.00 0.00 2.71
1845 1926 1.135139 ACGACGATGAGGAGGAATGTG 59.865 52.381 0.00 0.00 0.00 3.21
1846 1927 1.135139 CGACGATGAGGAGGAATGTGT 59.865 52.381 0.00 0.00 0.00 3.72
1847 1928 2.417379 CGACGATGAGGAGGAATGTGTT 60.417 50.000 0.00 0.00 0.00 3.32
1952 2237 9.612620 CAATTTGACAATTCTGTACTAAGTTCC 57.387 33.333 0.00 0.00 35.30 3.62
1953 2238 7.416154 TTTGACAATTCTGTACTAAGTTCCG 57.584 36.000 0.00 0.00 35.30 4.30
1954 2239 6.335471 TGACAATTCTGTACTAAGTTCCGA 57.665 37.500 0.00 0.00 35.30 4.55
1996 2285 1.522580 GGCCAAGAGCGACATCTCC 60.523 63.158 0.00 0.00 45.17 3.71
1997 2286 1.519719 GCCAAGAGCGACATCTCCT 59.480 57.895 0.00 0.00 33.66 3.69
1998 2287 0.529555 GCCAAGAGCGACATCTCCTC 60.530 60.000 0.00 0.00 33.66 3.71
1999 2288 0.248825 CCAAGAGCGACATCTCCTCG 60.249 60.000 0.00 0.00 33.66 4.63
2000 2289 0.248825 CAAGAGCGACATCTCCTCGG 60.249 60.000 0.00 0.00 33.66 4.63
2001 2290 0.394488 AAGAGCGACATCTCCTCGGA 60.394 55.000 0.00 0.00 33.66 4.55
2002 2291 0.817634 AGAGCGACATCTCCTCGGAG 60.818 60.000 6.63 6.63 43.21 4.63
2017 2306 3.780173 GAGAGCGGCTCCCTTGCT 61.780 66.667 25.49 6.63 42.73 3.91
2018 2307 3.322318 GAGAGCGGCTCCCTTGCTT 62.322 63.158 25.49 5.85 39.49 3.91
2019 2308 3.130160 GAGCGGCTCCCTTGCTTG 61.130 66.667 19.20 0.00 39.49 4.01
2023 2312 3.435186 GGCTCCCTTGCTTGCGTC 61.435 66.667 0.00 0.00 0.00 5.19
2024 2313 3.793144 GCTCCCTTGCTTGCGTCG 61.793 66.667 0.00 0.00 0.00 5.12
2025 2314 2.048222 CTCCCTTGCTTGCGTCGA 60.048 61.111 0.00 0.00 0.00 4.20
2026 2315 2.357034 TCCCTTGCTTGCGTCGAC 60.357 61.111 5.18 5.18 0.00 4.20
2027 2316 2.664851 CCCTTGCTTGCGTCGACA 60.665 61.111 17.16 0.00 0.00 4.35
2028 2317 2.034879 CCCTTGCTTGCGTCGACAT 61.035 57.895 17.16 0.00 0.00 3.06
2029 2318 0.739462 CCCTTGCTTGCGTCGACATA 60.739 55.000 17.16 0.00 0.00 2.29
2030 2319 0.647410 CCTTGCTTGCGTCGACATAG 59.353 55.000 17.16 10.01 0.00 2.23
2031 2320 1.629013 CTTGCTTGCGTCGACATAGA 58.371 50.000 17.16 0.00 0.00 1.98
2032 2321 1.321743 CTTGCTTGCGTCGACATAGAC 59.678 52.381 17.16 2.10 37.76 2.59
2039 2328 3.618774 GTCGACATAGACGGTGACC 57.381 57.895 11.55 0.00 0.00 4.02
2040 2329 0.806868 GTCGACATAGACGGTGACCA 59.193 55.000 11.55 0.00 0.00 4.02
2041 2330 1.200716 GTCGACATAGACGGTGACCAA 59.799 52.381 11.55 0.00 0.00 3.67
2042 2331 1.471287 TCGACATAGACGGTGACCAAG 59.529 52.381 1.11 0.00 0.00 3.61
2043 2332 1.471287 CGACATAGACGGTGACCAAGA 59.529 52.381 1.11 0.00 0.00 3.02
2044 2333 2.731341 CGACATAGACGGTGACCAAGAC 60.731 54.545 1.11 0.00 0.00 3.01
2045 2334 2.230508 GACATAGACGGTGACCAAGACA 59.769 50.000 1.11 0.00 0.00 3.41
2046 2335 2.832129 ACATAGACGGTGACCAAGACAT 59.168 45.455 1.11 0.00 0.00 3.06
2047 2336 4.021229 ACATAGACGGTGACCAAGACATA 58.979 43.478 1.11 0.00 0.00 2.29
2048 2337 4.098044 ACATAGACGGTGACCAAGACATAG 59.902 45.833 1.11 0.00 0.00 2.23
2049 2338 2.803956 AGACGGTGACCAAGACATAGA 58.196 47.619 1.11 0.00 0.00 1.98
2050 2339 2.492484 AGACGGTGACCAAGACATAGAC 59.508 50.000 1.11 0.00 0.00 2.59
2051 2340 1.201647 ACGGTGACCAAGACATAGACG 59.798 52.381 1.11 0.00 0.00 4.18
2052 2341 1.641577 GGTGACCAAGACATAGACGC 58.358 55.000 0.00 0.00 0.00 5.19
2053 2342 1.269166 GTGACCAAGACATAGACGCG 58.731 55.000 3.53 3.53 0.00 6.01
2054 2343 0.172578 TGACCAAGACATAGACGCGG 59.827 55.000 12.47 0.00 0.00 6.46
2055 2344 1.146358 GACCAAGACATAGACGCGGC 61.146 60.000 12.47 7.86 0.00 6.53
2056 2345 1.153647 CCAAGACATAGACGCGGCA 60.154 57.895 17.71 0.00 0.00 5.69
2057 2346 0.739462 CCAAGACATAGACGCGGCAA 60.739 55.000 17.71 0.00 0.00 4.52
2058 2347 0.370273 CAAGACATAGACGCGGCAAC 59.630 55.000 17.71 0.00 0.00 4.17
2059 2348 0.037697 AAGACATAGACGCGGCAACA 60.038 50.000 17.71 0.00 0.00 3.33
2060 2349 0.458543 AGACATAGACGCGGCAACAG 60.459 55.000 17.71 2.90 0.00 3.16
2061 2350 0.457853 GACATAGACGCGGCAACAGA 60.458 55.000 17.71 0.00 0.00 3.41
2062 2351 0.037697 ACATAGACGCGGCAACAGAA 60.038 50.000 17.71 0.00 0.00 3.02
2063 2352 1.290203 CATAGACGCGGCAACAGAAT 58.710 50.000 17.71 0.00 0.00 2.40
2064 2353 1.004610 CATAGACGCGGCAACAGAATG 60.005 52.381 17.71 3.78 46.00 2.67
2065 2354 1.358725 TAGACGCGGCAACAGAATGC 61.359 55.000 17.71 0.00 42.53 3.56
2073 2362 2.798976 GCAACAGAATGCAAGGAACA 57.201 45.000 0.00 0.00 45.70 3.18
2074 2363 2.397549 GCAACAGAATGCAAGGAACAC 58.602 47.619 0.00 0.00 45.70 3.32
2075 2364 2.653890 CAACAGAATGCAAGGAACACG 58.346 47.619 0.00 0.00 42.53 4.49
2076 2365 2.254546 ACAGAATGCAAGGAACACGA 57.745 45.000 0.00 0.00 42.53 4.35
2077 2366 2.571212 ACAGAATGCAAGGAACACGAA 58.429 42.857 0.00 0.00 42.53 3.85
2078 2367 2.549754 ACAGAATGCAAGGAACACGAAG 59.450 45.455 0.00 0.00 42.53 3.79
2079 2368 2.807967 CAGAATGCAAGGAACACGAAGA 59.192 45.455 0.00 0.00 0.00 2.87
2080 2369 2.808543 AGAATGCAAGGAACACGAAGAC 59.191 45.455 0.00 0.00 0.00 3.01
2081 2370 2.254546 ATGCAAGGAACACGAAGACA 57.745 45.000 0.00 0.00 0.00 3.41
2082 2371 2.031258 TGCAAGGAACACGAAGACAA 57.969 45.000 0.00 0.00 0.00 3.18
2083 2372 1.668751 TGCAAGGAACACGAAGACAAC 59.331 47.619 0.00 0.00 0.00 3.32
2084 2373 1.332904 GCAAGGAACACGAAGACAACG 60.333 52.381 0.00 0.00 0.00 4.10
2085 2374 2.198406 CAAGGAACACGAAGACAACGA 58.802 47.619 0.00 0.00 34.70 3.85
2086 2375 2.135664 AGGAACACGAAGACAACGAG 57.864 50.000 0.00 0.00 34.70 4.18
2087 2376 1.137513 GGAACACGAAGACAACGAGG 58.862 55.000 0.00 0.00 34.70 4.63
2088 2377 1.269413 GGAACACGAAGACAACGAGGA 60.269 52.381 0.00 0.00 34.70 3.71
2089 2378 2.052157 GAACACGAAGACAACGAGGAG 58.948 52.381 0.00 0.00 34.70 3.69
2090 2379 0.314302 ACACGAAGACAACGAGGAGG 59.686 55.000 0.00 0.00 34.70 4.30
2091 2380 0.596577 CACGAAGACAACGAGGAGGA 59.403 55.000 0.00 0.00 34.70 3.71
2092 2381 0.597072 ACGAAGACAACGAGGAGGAC 59.403 55.000 0.00 0.00 34.70 3.85
2093 2382 0.454620 CGAAGACAACGAGGAGGACG 60.455 60.000 0.00 0.00 0.00 4.79
2094 2383 0.879765 GAAGACAACGAGGAGGACGA 59.120 55.000 0.00 0.00 34.70 4.20
2095 2384 1.473278 GAAGACAACGAGGAGGACGAT 59.527 52.381 0.00 0.00 34.70 3.73
2096 2385 0.811915 AGACAACGAGGAGGACGATG 59.188 55.000 0.00 0.00 38.93 3.84
2097 2386 0.809385 GACAACGAGGAGGACGATGA 59.191 55.000 0.00 0.00 37.09 2.92
2098 2387 0.811915 ACAACGAGGAGGACGATGAG 59.188 55.000 0.00 0.00 37.09 2.90
2099 2388 0.101399 CAACGAGGAGGACGATGAGG 59.899 60.000 0.00 0.00 36.04 3.86
2100 2389 0.034380 AACGAGGAGGACGATGAGGA 60.034 55.000 0.00 0.00 34.70 3.71
2101 2390 0.464735 ACGAGGAGGACGATGAGGAG 60.465 60.000 0.00 0.00 34.70 3.69
2102 2391 1.169661 CGAGGAGGACGATGAGGAGG 61.170 65.000 0.00 0.00 0.00 4.30
2103 2392 0.183971 GAGGAGGACGATGAGGAGGA 59.816 60.000 0.00 0.00 0.00 3.71
2104 2393 0.631753 AGGAGGACGATGAGGAGGAA 59.368 55.000 0.00 0.00 0.00 3.36
2105 2394 1.219213 AGGAGGACGATGAGGAGGAAT 59.781 52.381 0.00 0.00 0.00 3.01
2106 2395 1.342819 GGAGGACGATGAGGAGGAATG 59.657 57.143 0.00 0.00 0.00 2.67
2107 2396 0.755686 AGGACGATGAGGAGGAATGC 59.244 55.000 0.00 0.00 0.00 3.56
2108 2397 0.598680 GGACGATGAGGAGGAATGCG 60.599 60.000 0.00 0.00 0.00 4.73
2109 2398 0.103208 GACGATGAGGAGGAATGCGT 59.897 55.000 0.00 0.00 0.00 5.24
2110 2399 0.179100 ACGATGAGGAGGAATGCGTG 60.179 55.000 0.00 0.00 0.00 5.34
2111 2400 0.103026 CGATGAGGAGGAATGCGTGA 59.897 55.000 0.00 0.00 0.00 4.35
2112 2401 1.863267 GATGAGGAGGAATGCGTGAG 58.137 55.000 0.00 0.00 0.00 3.51
2113 2402 1.410517 GATGAGGAGGAATGCGTGAGA 59.589 52.381 0.00 0.00 0.00 3.27
2114 2403 0.532573 TGAGGAGGAATGCGTGAGAC 59.467 55.000 0.00 0.00 0.00 3.36
2115 2404 0.179097 GAGGAGGAATGCGTGAGACC 60.179 60.000 0.00 0.00 0.00 3.85
2116 2405 1.519455 GGAGGAATGCGTGAGACCG 60.519 63.158 0.00 0.00 0.00 4.79
2125 2414 4.194720 GTGAGACCGCGGCGAGAT 62.195 66.667 28.58 4.48 0.00 2.75
2126 2415 3.889044 TGAGACCGCGGCGAGATC 61.889 66.667 28.58 15.49 0.00 2.75
2127 2416 3.889044 GAGACCGCGGCGAGATCA 61.889 66.667 28.58 0.00 0.00 2.92
2128 2417 4.194720 AGACCGCGGCGAGATCAC 62.195 66.667 28.58 6.57 0.00 3.06
2129 2418 4.492160 GACCGCGGCGAGATCACA 62.492 66.667 28.58 0.00 0.00 3.58
2130 2419 3.982372 GACCGCGGCGAGATCACAA 62.982 63.158 28.58 0.00 0.00 3.33
2131 2420 3.257561 CCGCGGCGAGATCACAAG 61.258 66.667 25.92 0.00 0.00 3.16
2132 2421 3.918220 CGCGGCGAGATCACAAGC 61.918 66.667 19.16 0.00 0.00 4.01
2133 2422 2.510238 GCGGCGAGATCACAAGCT 60.510 61.111 12.98 0.00 0.00 3.74
2134 2423 2.520904 GCGGCGAGATCACAAGCTC 61.521 63.158 12.98 0.00 34.50 4.09
2141 2430 3.073144 GAGATCACAAGCTCGAGGTAC 57.927 52.381 18.94 0.00 0.00 3.34
2142 2431 1.751924 AGATCACAAGCTCGAGGTACC 59.248 52.381 18.94 2.73 0.00 3.34
2143 2432 0.456221 ATCACAAGCTCGAGGTACCG 59.544 55.000 18.94 11.92 0.00 4.02
2144 2433 0.892358 TCACAAGCTCGAGGTACCGT 60.892 55.000 18.94 12.58 0.00 4.83
2145 2434 0.456312 CACAAGCTCGAGGTACCGTC 60.456 60.000 18.94 3.83 0.00 4.79
2146 2435 1.139095 CAAGCTCGAGGTACCGTCC 59.861 63.158 18.94 0.00 0.00 4.79
2147 2436 1.303888 AAGCTCGAGGTACCGTCCA 60.304 57.895 18.94 0.00 0.00 4.02
2148 2437 1.593296 AAGCTCGAGGTACCGTCCAC 61.593 60.000 18.94 0.00 0.00 4.02
2149 2438 2.045131 GCTCGAGGTACCGTCCACT 61.045 63.158 15.58 0.00 0.00 4.00
2150 2439 1.991099 GCTCGAGGTACCGTCCACTC 61.991 65.000 15.58 0.00 0.00 3.51
2151 2440 2.789917 CGAGGTACCGTCCACTCG 59.210 66.667 6.18 5.38 45.34 4.18
2152 2441 2.037136 CGAGGTACCGTCCACTCGT 61.037 63.158 6.18 0.00 45.48 4.18
2153 2442 1.505353 GAGGTACCGTCCACTCGTG 59.495 63.158 6.18 0.00 0.00 4.35
2154 2443 2.126189 GGTACCGTCCACTCGTGC 60.126 66.667 0.00 0.00 0.00 5.34
2155 2444 2.126189 GTACCGTCCACTCGTGCC 60.126 66.667 0.00 0.00 0.00 5.01
2156 2445 3.740397 TACCGTCCACTCGTGCCG 61.740 66.667 0.00 0.00 0.00 5.69
2196 2485 2.666190 GTGCTCGCTCTGTGCCAA 60.666 61.111 0.00 0.00 38.78 4.52
2197 2486 2.037136 GTGCTCGCTCTGTGCCAAT 61.037 57.895 0.00 0.00 38.78 3.16
2198 2487 1.302752 TGCTCGCTCTGTGCCAATT 60.303 52.632 0.00 0.00 38.78 2.32
2199 2488 0.890542 TGCTCGCTCTGTGCCAATTT 60.891 50.000 0.00 0.00 38.78 1.82
2200 2489 0.455633 GCTCGCTCTGTGCCAATTTG 60.456 55.000 0.00 0.00 38.78 2.32
2201 2490 1.159285 CTCGCTCTGTGCCAATTTGA 58.841 50.000 0.00 0.00 38.78 2.69
2202 2491 0.874390 TCGCTCTGTGCCAATTTGAC 59.126 50.000 0.00 0.00 38.78 3.18
2203 2492 0.453282 CGCTCTGTGCCAATTTGACG 60.453 55.000 0.00 0.00 38.78 4.35
2204 2493 0.730494 GCTCTGTGCCAATTTGACGC 60.730 55.000 0.00 0.00 35.15 5.19
2205 2494 0.877071 CTCTGTGCCAATTTGACGCT 59.123 50.000 0.00 0.00 0.00 5.07
2206 2495 0.592637 TCTGTGCCAATTTGACGCTG 59.407 50.000 0.00 0.00 0.00 5.18
2207 2496 0.311790 CTGTGCCAATTTGACGCTGT 59.688 50.000 0.00 0.00 0.00 4.40
2208 2497 0.310543 TGTGCCAATTTGACGCTGTC 59.689 50.000 0.00 2.32 0.00 3.51
2209 2498 0.387239 GTGCCAATTTGACGCTGTCC 60.387 55.000 0.00 0.00 0.00 4.02
2210 2499 0.537143 TGCCAATTTGACGCTGTCCT 60.537 50.000 0.00 0.00 0.00 3.85
2211 2500 0.109597 GCCAATTTGACGCTGTCCTG 60.110 55.000 0.00 0.53 0.00 3.86
2212 2501 1.522668 CCAATTTGACGCTGTCCTGA 58.477 50.000 0.00 0.00 0.00 3.86
2213 2502 1.879380 CCAATTTGACGCTGTCCTGAA 59.121 47.619 0.00 0.92 0.00 3.02
2214 2503 2.350772 CCAATTTGACGCTGTCCTGAAC 60.351 50.000 0.00 0.00 0.00 3.18
2215 2504 2.549754 CAATTTGACGCTGTCCTGAACT 59.450 45.455 6.30 0.00 0.00 3.01
2216 2505 1.581934 TTTGACGCTGTCCTGAACTG 58.418 50.000 6.30 0.00 0.00 3.16
2217 2506 0.750249 TTGACGCTGTCCTGAACTGA 59.250 50.000 6.30 0.00 0.00 3.41
2218 2507 0.750249 TGACGCTGTCCTGAACTGAA 59.250 50.000 6.30 0.00 0.00 3.02
2219 2508 1.344438 TGACGCTGTCCTGAACTGAAT 59.656 47.619 6.30 0.00 0.00 2.57
2220 2509 2.224281 TGACGCTGTCCTGAACTGAATT 60.224 45.455 6.30 0.00 0.00 2.17
2221 2510 2.413453 GACGCTGTCCTGAACTGAATTC 59.587 50.000 0.00 0.00 37.88 2.17
2222 2511 1.734465 CGCTGTCCTGAACTGAATTCC 59.266 52.381 2.27 0.00 36.36 3.01
2223 2512 2.087646 GCTGTCCTGAACTGAATTCCC 58.912 52.381 2.27 0.00 36.36 3.97
2224 2513 2.553028 GCTGTCCTGAACTGAATTCCCA 60.553 50.000 2.27 0.00 36.36 4.37
2225 2514 3.875369 GCTGTCCTGAACTGAATTCCCAT 60.875 47.826 2.27 0.00 36.36 4.00
2226 2515 4.338879 CTGTCCTGAACTGAATTCCCATT 58.661 43.478 2.27 0.00 36.36 3.16
2227 2516 4.081406 TGTCCTGAACTGAATTCCCATTG 58.919 43.478 2.27 0.00 36.36 2.82
2228 2517 4.202556 TGTCCTGAACTGAATTCCCATTGA 60.203 41.667 2.27 0.00 36.36 2.57
2229 2518 4.952335 GTCCTGAACTGAATTCCCATTGAT 59.048 41.667 2.27 0.00 36.36 2.57
2230 2519 5.420104 GTCCTGAACTGAATTCCCATTGATT 59.580 40.000 2.27 0.00 36.36 2.57
2231 2520 6.018469 TCCTGAACTGAATTCCCATTGATTT 58.982 36.000 2.27 0.00 36.36 2.17
2232 2521 6.497954 TCCTGAACTGAATTCCCATTGATTTT 59.502 34.615 2.27 0.00 36.36 1.82
2233 2522 6.592607 CCTGAACTGAATTCCCATTGATTTTG 59.407 38.462 2.27 0.00 36.36 2.44
2234 2523 5.933463 TGAACTGAATTCCCATTGATTTTGC 59.067 36.000 2.27 0.00 36.36 3.68
2235 2524 5.486735 ACTGAATTCCCATTGATTTTGCA 57.513 34.783 2.27 0.00 0.00 4.08
2236 2525 5.484715 ACTGAATTCCCATTGATTTTGCAG 58.515 37.500 2.27 0.00 0.00 4.41
2237 2526 5.012354 ACTGAATTCCCATTGATTTTGCAGT 59.988 36.000 2.27 0.00 0.00 4.40
2238 2527 5.481105 TGAATTCCCATTGATTTTGCAGTC 58.519 37.500 2.27 0.00 0.00 3.51
2239 2528 3.959535 TTCCCATTGATTTTGCAGTCC 57.040 42.857 0.00 0.00 0.00 3.85
2240 2529 1.818060 TCCCATTGATTTTGCAGTCCG 59.182 47.619 0.00 0.00 0.00 4.79
2241 2530 1.818060 CCCATTGATTTTGCAGTCCGA 59.182 47.619 0.00 0.00 0.00 4.55
2242 2531 2.159338 CCCATTGATTTTGCAGTCCGAG 60.159 50.000 0.00 0.00 0.00 4.63
2243 2532 2.159338 CCATTGATTTTGCAGTCCGAGG 60.159 50.000 0.00 0.00 0.00 4.63
2244 2533 0.881118 TTGATTTTGCAGTCCGAGGC 59.119 50.000 0.00 0.00 0.00 4.70
2245 2534 1.298157 TGATTTTGCAGTCCGAGGCG 61.298 55.000 0.00 0.00 0.00 5.52
2246 2535 1.003839 ATTTTGCAGTCCGAGGCGA 60.004 52.632 0.00 0.00 0.00 5.54
2247 2536 0.605319 ATTTTGCAGTCCGAGGCGAA 60.605 50.000 0.00 0.00 0.00 4.70
2248 2537 1.227999 TTTTGCAGTCCGAGGCGAAG 61.228 55.000 0.00 0.00 35.03 3.79
2249 2538 2.094757 TTTGCAGTCCGAGGCGAAGA 62.095 55.000 0.00 0.00 0.00 2.87
2250 2539 2.202676 GCAGTCCGAGGCGAAGAG 60.203 66.667 0.00 0.00 0.00 2.85
2380 2681 1.683629 GGAGACACTGACGAGGAGGAT 60.684 57.143 0.00 0.00 0.00 3.24
2539 2840 2.992114 AAGGAGCGCGAGGTGTCT 60.992 61.111 12.10 0.00 45.11 3.41
2570 2871 0.247460 CACAGCCAATCTCGTCTCCA 59.753 55.000 0.00 0.00 0.00 3.86
2581 2882 1.276421 CTCGTCTCCAACCACAAGGAT 59.724 52.381 0.00 0.00 38.69 3.24
2588 2889 1.270839 CCAACCACAAGGATGAGTCGT 60.271 52.381 0.00 0.00 39.92 4.34
2615 2916 2.267351 TAGAACCAACGGACCGCGA 61.267 57.895 15.39 0.00 0.00 5.87
2618 2919 3.154584 AACCAACGGACCGCGAAGA 62.155 57.895 15.39 0.00 0.00 2.87
2619 2920 2.125673 CCAACGGACCGCGAAGAT 60.126 61.111 15.39 0.00 0.00 2.40
2621 2922 1.445410 CAACGGACCGCGAAGATGA 60.445 57.895 15.39 0.00 0.00 2.92
2623 2924 1.592400 AACGGACCGCGAAGATGAGA 61.592 55.000 15.39 0.00 0.00 3.27
2624 2925 1.360551 CGGACCGCGAAGATGAGAT 59.639 57.895 8.23 0.00 0.00 2.75
2625 2926 0.591659 CGGACCGCGAAGATGAGATA 59.408 55.000 8.23 0.00 0.00 1.98
2626 2927 1.200252 CGGACCGCGAAGATGAGATAT 59.800 52.381 8.23 0.00 0.00 1.63
2627 2928 2.418976 CGGACCGCGAAGATGAGATATA 59.581 50.000 8.23 0.00 0.00 0.86
2630 2931 5.411781 GGACCGCGAAGATGAGATATAATT 58.588 41.667 8.23 0.00 0.00 1.40
2631 2932 6.561614 GGACCGCGAAGATGAGATATAATTA 58.438 40.000 8.23 0.00 0.00 1.40
2632 2933 7.033791 GGACCGCGAAGATGAGATATAATTAA 58.966 38.462 8.23 0.00 0.00 1.40
2634 2935 7.375834 ACCGCGAAGATGAGATATAATTAACA 58.624 34.615 8.23 0.00 0.00 2.41
2636 2937 7.542477 CCGCGAAGATGAGATATAATTAACACT 59.458 37.037 8.23 0.00 0.00 3.55
2637 2938 9.556030 CGCGAAGATGAGATATAATTAACACTA 57.444 33.333 0.00 0.00 0.00 2.74
2648 2949 9.991906 GATATAATTAACACTACTAGCAACCCA 57.008 33.333 0.00 0.00 0.00 4.51
2649 2950 9.774413 ATATAATTAACACTACTAGCAACCCAC 57.226 33.333 0.00 0.00 0.00 4.61
2650 2951 4.959560 TTAACACTACTAGCAACCCACA 57.040 40.909 0.00 0.00 0.00 4.17
2653 2954 2.637872 ACACTACTAGCAACCCACATGT 59.362 45.455 0.00 0.00 0.00 3.21
2654 2955 3.835978 ACACTACTAGCAACCCACATGTA 59.164 43.478 0.00 0.00 0.00 2.29
2662 2964 3.265737 AGCAACCCACATGTACCAATCTA 59.734 43.478 0.00 0.00 0.00 1.98
2664 2966 4.461081 GCAACCCACATGTACCAATCTAAA 59.539 41.667 0.00 0.00 0.00 1.85
2666 2968 4.595986 ACCCACATGTACCAATCTAAACC 58.404 43.478 0.00 0.00 0.00 3.27
2671 2973 5.063438 CACATGTACCAATCTAAACCTGTCG 59.937 44.000 0.00 0.00 0.00 4.35
2672 2974 5.046878 ACATGTACCAATCTAAACCTGTCGA 60.047 40.000 0.00 0.00 0.00 4.20
2673 2975 5.670792 TGTACCAATCTAAACCTGTCGAT 57.329 39.130 0.00 0.00 0.00 3.59
2675 2977 7.172868 TGTACCAATCTAAACCTGTCGATAA 57.827 36.000 0.00 0.00 0.00 1.75
2677 2979 8.095792 TGTACCAATCTAAACCTGTCGATAAAA 58.904 33.333 0.00 0.00 0.00 1.52
2678 2980 7.611213 ACCAATCTAAACCTGTCGATAAAAG 57.389 36.000 0.00 0.00 0.00 2.27
2681 2983 8.818057 CCAATCTAAACCTGTCGATAAAAGTAG 58.182 37.037 0.00 0.00 0.00 2.57
2682 2984 9.582431 CAATCTAAACCTGTCGATAAAAGTAGA 57.418 33.333 0.00 0.00 0.00 2.59
2690 2992 4.925054 TGTCGATAAAAGTAGAACCAACGG 59.075 41.667 0.00 0.00 0.00 4.44
2701 3706 2.034066 CCAACGGGTCACCATGCT 59.966 61.111 0.00 0.00 36.13 3.79
2702 3707 2.040544 CCAACGGGTCACCATGCTC 61.041 63.158 0.00 0.00 36.13 4.26
2703 3708 1.302431 CAACGGGTCACCATGCTCA 60.302 57.895 0.00 0.00 36.13 4.26
2705 3710 1.480212 AACGGGTCACCATGCTCAGA 61.480 55.000 0.00 0.00 36.13 3.27
2706 3711 1.267574 ACGGGTCACCATGCTCAGAT 61.268 55.000 0.00 0.00 36.13 2.90
2710 5442 3.620488 GGGTCACCATGCTCAGATAAAA 58.380 45.455 0.00 0.00 36.50 1.52
2712 5444 4.265073 GGTCACCATGCTCAGATAAAAGT 58.735 43.478 0.00 0.00 0.00 2.66
2713 5445 5.428253 GGTCACCATGCTCAGATAAAAGTA 58.572 41.667 0.00 0.00 0.00 2.24
2714 5446 5.525378 GGTCACCATGCTCAGATAAAAGTAG 59.475 44.000 0.00 0.00 0.00 2.57
2717 5449 6.818644 TCACCATGCTCAGATAAAAGTAGAAC 59.181 38.462 0.00 0.00 0.00 3.01
2719 5451 6.115446 CCATGCTCAGATAAAAGTAGAACCA 58.885 40.000 0.00 0.00 0.00 3.67
2722 5454 5.637810 TGCTCAGATAAAAGTAGAACCAACG 59.362 40.000 0.00 0.00 0.00 4.10
2726 5458 5.350640 CAGATAAAAGTAGAACCAACGGACC 59.649 44.000 0.00 0.00 0.00 4.46
2727 5459 2.159327 AAAGTAGAACCAACGGACCG 57.841 50.000 13.61 13.61 0.00 4.79
2732 5464 4.675029 AACCAACGGACCGCGGAG 62.675 66.667 35.90 23.99 0.00 4.63
2764 5496 0.462937 CGTCGCAACCATTATCCCCA 60.463 55.000 0.00 0.00 0.00 4.96
2765 5497 1.813862 CGTCGCAACCATTATCCCCAT 60.814 52.381 0.00 0.00 0.00 4.00
2767 5499 0.961019 CGCAACCATTATCCCCATGG 59.039 55.000 4.14 4.14 46.07 3.66
2824 5598 4.662278 AGAAACAAGAAAATCCCATCCGA 58.338 39.130 0.00 0.00 0.00 4.55
2871 5649 1.797046 CTCGCTATCATCATGCACACC 59.203 52.381 0.00 0.00 0.00 4.16
2894 5672 6.213600 ACCGAACTCCATGATATATAAGCCTT 59.786 38.462 0.00 0.00 0.00 4.35
2910 5688 7.736447 ATAAGCCTTTTAGAGATTTCATCGG 57.264 36.000 0.00 0.00 0.00 4.18
2916 5694 7.684670 GCCTTTTAGAGATTTCATCGGTAGAGA 60.685 40.741 0.00 0.00 0.00 3.10
2918 5696 7.640597 TTTAGAGATTTCATCGGTAGAGACA 57.359 36.000 0.00 0.00 0.00 3.41
2921 5699 5.419155 AGAGATTTCATCGGTAGAGACAACA 59.581 40.000 0.00 0.00 0.00 3.33
2935 5713 6.707440 AGAGACAACATACAGATGTAGAGG 57.293 41.667 0.00 0.00 45.93 3.69
2957 5735 6.306987 AGGGTACATTCACTCATTTTGTTCT 58.693 36.000 0.00 0.00 0.00 3.01
2958 5736 7.458397 AGGGTACATTCACTCATTTTGTTCTA 58.542 34.615 0.00 0.00 0.00 2.10
2970 5748 6.539173 TCATTTTGTTCTATATATGGCCCGT 58.461 36.000 0.00 0.00 0.00 5.28
2971 5749 7.681679 TCATTTTGTTCTATATATGGCCCGTA 58.318 34.615 0.00 0.00 0.00 4.02
3014 5792 9.530129 GACTTGTATTTAGAAACAACTCATTCG 57.470 33.333 0.00 0.00 32.43 3.34
3015 5793 9.268268 ACTTGTATTTAGAAACAACTCATTCGA 57.732 29.630 0.00 0.00 32.43 3.71
3018 5796 8.879759 TGTATTTAGAAACAACTCATTCGATCC 58.120 33.333 0.00 0.00 0.00 3.36
3152 5970 4.590918 TGCTAATTTCAAATCCACCCGTA 58.409 39.130 0.00 0.00 0.00 4.02
3165 5983 2.264813 CACCCGTAGTGTATTTGGACG 58.735 52.381 0.00 0.00 41.93 4.79
3179 5997 3.210528 GACGGATCGCTCGACCCT 61.211 66.667 0.74 0.00 0.00 4.34
3182 6000 2.771639 CGGATCGCTCGACCCTTGA 61.772 63.158 0.74 0.00 0.00 3.02
3183 6001 1.227002 GGATCGCTCGACCCTTGAC 60.227 63.158 0.00 0.00 0.00 3.18
3282 6100 3.005367 TCCAAATCCTTCCGAAGCAAAAC 59.995 43.478 2.27 0.00 0.00 2.43
3462 6285 7.930217 TGATTTCGGCTCCTAAAATAATTCAG 58.070 34.615 0.00 0.00 0.00 3.02
3531 6358 5.963176 TTGTACATGGTACGTACTTGAGA 57.037 39.130 24.07 12.76 39.96 3.27
3532 6359 6.519679 TTGTACATGGTACGTACTTGAGAT 57.480 37.500 24.07 9.85 39.96 2.75
3535 6362 8.229253 TGTACATGGTACGTACTTGAGATATT 57.771 34.615 24.07 8.68 39.96 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.300956 TGGCTTTGGATGTTGGCTTA 57.699 45.000 0.00 0.00 0.00 3.09
88 89 3.821600 TGATACCTTCTAGCGTCTGGATC 59.178 47.826 0.00 0.00 0.00 3.36
96 97 2.611473 CCTGCCATGATACCTTCTAGCG 60.611 54.545 0.00 0.00 0.00 4.26
153 161 9.860898 GTAAATCAAGACTCCATTTGCTAAATT 57.139 29.630 3.01 0.00 0.00 1.82
160 168 6.127897 GGTCAGGTAAATCAAGACTCCATTTG 60.128 42.308 0.00 0.00 0.00 2.32
183 191 6.958767 ACTTACCTATGAATAAGTTGCTGGT 58.041 36.000 0.00 0.00 38.23 4.00
185 193 9.378551 TGTAACTTACCTATGAATAAGTTGCTG 57.621 33.333 18.98 0.00 46.25 4.41
290 299 9.096160 GTTCTATAATCTGCACATGATAGATGG 57.904 37.037 9.24 0.23 31.89 3.51
291 300 9.096160 GGTTCTATAATCTGCACATGATAGATG 57.904 37.037 9.24 0.00 31.89 2.90
293 302 7.577616 CGGGTTCTATAATCTGCACATGATAGA 60.578 40.741 5.20 5.20 0.00 1.98
298 307 4.631131 TCGGGTTCTATAATCTGCACATG 58.369 43.478 0.00 0.00 0.00 3.21
300 309 3.958147 TCTCGGGTTCTATAATCTGCACA 59.042 43.478 0.00 0.00 0.00 4.57
329 339 8.671921 GTTGATTGAAGCGGAATATCATGATAT 58.328 33.333 20.42 20.42 35.63 1.63
350 360 0.396139 ATGGCGAGGCAATGGTTGAT 60.396 50.000 2.86 0.00 0.00 2.57
357 367 0.968405 AAAACACATGGCGAGGCAAT 59.032 45.000 2.86 0.00 0.00 3.56
404 415 6.652900 TCATTCCAACGAAATCAATAGACACA 59.347 34.615 0.00 0.00 0.00 3.72
409 420 9.571810 TCAATTTCATTCCAACGAAATCAATAG 57.428 29.630 0.00 0.00 40.15 1.73
456 469 2.415090 CCTTGAAGCAGAATCTTTGCCG 60.415 50.000 0.00 0.00 42.48 5.69
519 562 8.319057 TGTAAGGGTTGAGAGTTGATACATAT 57.681 34.615 0.00 0.00 0.00 1.78
532 575 7.219484 ACAATTCTGATTTGTAAGGGTTGAG 57.781 36.000 14.35 0.00 0.00 3.02
533 576 7.721842 TGTACAATTCTGATTTGTAAGGGTTGA 59.278 33.333 20.49 2.74 0.00 3.18
547 590 5.408299 CCGTGATGAGTTTGTACAATTCTGA 59.592 40.000 9.56 6.08 0.00 3.27
548 591 5.408299 TCCGTGATGAGTTTGTACAATTCTG 59.592 40.000 9.56 0.00 0.00 3.02
556 599 2.028476 CCACCTCCGTGATGAGTTTGTA 60.028 50.000 0.00 0.00 43.14 2.41
557 600 1.270839 CCACCTCCGTGATGAGTTTGT 60.271 52.381 0.00 0.00 43.14 2.83
564 607 0.895530 AGTGTACCACCTCCGTGATG 59.104 55.000 0.00 0.00 43.14 3.07
565 608 1.549170 GAAGTGTACCACCTCCGTGAT 59.451 52.381 0.00 0.00 43.14 3.06
608 651 4.796312 CGATAATTTCCGGCGTTTGATTTT 59.204 37.500 6.01 0.00 0.00 1.82
610 653 3.242936 CCGATAATTTCCGGCGTTTGATT 60.243 43.478 6.01 3.35 39.22 2.57
612 655 1.666700 CCGATAATTTCCGGCGTTTGA 59.333 47.619 6.01 0.00 39.22 2.69
613 656 1.268335 CCCGATAATTTCCGGCGTTTG 60.268 52.381 6.01 0.00 44.07 2.93
614 657 1.018910 CCCGATAATTTCCGGCGTTT 58.981 50.000 6.01 0.00 44.07 3.60
616 659 0.178533 TTCCCGATAATTTCCGGCGT 59.821 50.000 6.01 0.00 44.07 5.68
617 660 0.865769 CTTCCCGATAATTTCCGGCG 59.134 55.000 0.00 0.00 44.07 6.46
618 661 2.249844 TCTTCCCGATAATTTCCGGC 57.750 50.000 11.37 0.00 44.07 6.13
619 662 4.819630 TCAAATCTTCCCGATAATTTCCGG 59.180 41.667 0.00 0.00 44.94 5.14
621 664 8.996024 TTTTTCAAATCTTCCCGATAATTTCC 57.004 30.769 0.00 0.00 0.00 3.13
643 702 6.794534 AGAGAATGGAGGGAGTAATGTTTTT 58.205 36.000 0.00 0.00 0.00 1.94
649 708 8.798975 TTGTATAAGAGAATGGAGGGAGTAAT 57.201 34.615 0.00 0.00 0.00 1.89
653 712 5.512232 GCCTTGTATAAGAGAATGGAGGGAG 60.512 48.000 0.00 0.00 35.92 4.30
655 714 4.505742 GGCCTTGTATAAGAGAATGGAGGG 60.506 50.000 0.00 0.00 35.92 4.30
656 715 4.103153 TGGCCTTGTATAAGAGAATGGAGG 59.897 45.833 3.32 0.00 35.92 4.30
658 717 4.473196 TGTGGCCTTGTATAAGAGAATGGA 59.527 41.667 3.32 0.00 35.92 3.41
660 719 6.375455 AGTTTGTGGCCTTGTATAAGAGAATG 59.625 38.462 3.32 0.00 35.92 2.67
661 720 6.485171 AGTTTGTGGCCTTGTATAAGAGAAT 58.515 36.000 3.32 0.00 35.92 2.40
662 721 5.876357 AGTTTGTGGCCTTGTATAAGAGAA 58.124 37.500 3.32 0.00 35.92 2.87
663 722 5.012664 TGAGTTTGTGGCCTTGTATAAGAGA 59.987 40.000 3.32 0.00 35.92 3.10
664 723 5.245531 TGAGTTTGTGGCCTTGTATAAGAG 58.754 41.667 3.32 0.00 35.92 2.85
665 724 5.235850 TGAGTTTGTGGCCTTGTATAAGA 57.764 39.130 3.32 0.00 35.92 2.10
666 725 5.957842 TTGAGTTTGTGGCCTTGTATAAG 57.042 39.130 3.32 0.00 0.00 1.73
667 726 6.909550 ATTTGAGTTTGTGGCCTTGTATAA 57.090 33.333 3.32 0.00 0.00 0.98
669 728 5.806654 AATTTGAGTTTGTGGCCTTGTAT 57.193 34.783 3.32 0.00 0.00 2.29
670 729 5.594725 TGTAATTTGAGTTTGTGGCCTTGTA 59.405 36.000 3.32 0.00 0.00 2.41
671 730 4.404073 TGTAATTTGAGTTTGTGGCCTTGT 59.596 37.500 3.32 0.00 0.00 3.16
674 733 3.573967 CCTGTAATTTGAGTTTGTGGCCT 59.426 43.478 3.32 0.00 0.00 5.19
675 734 3.320826 ACCTGTAATTTGAGTTTGTGGCC 59.679 43.478 0.00 0.00 0.00 5.36
676 735 4.584327 ACCTGTAATTTGAGTTTGTGGC 57.416 40.909 0.00 0.00 0.00 5.01
677 736 5.533154 TGGTACCTGTAATTTGAGTTTGTGG 59.467 40.000 14.36 0.00 0.00 4.17
679 738 7.057894 TCTTGGTACCTGTAATTTGAGTTTGT 58.942 34.615 14.36 0.00 0.00 2.83
680 739 7.504924 TCTTGGTACCTGTAATTTGAGTTTG 57.495 36.000 14.36 0.00 0.00 2.93
681 740 9.802039 TTATCTTGGTACCTGTAATTTGAGTTT 57.198 29.630 14.36 0.00 0.00 2.66
707 766 9.545105 TGACTTGCAAAATCAGTCATTAAATTT 57.455 25.926 12.98 0.00 35.00 1.82
708 767 9.545105 TTGACTTGCAAAATCAGTCATTAAATT 57.455 25.926 16.71 0.00 38.95 1.82
709 768 9.715121 ATTGACTTGCAAAATCAGTCATTAAAT 57.285 25.926 16.71 6.75 40.48 1.40
710 769 9.545105 AATTGACTTGCAAAATCAGTCATTAAA 57.455 25.926 16.71 4.91 40.48 1.52
713 772 9.715121 AATAATTGACTTGCAAAATCAGTCATT 57.285 25.926 16.71 11.57 40.48 2.57
714 773 9.362539 GAATAATTGACTTGCAAAATCAGTCAT 57.637 29.630 16.71 7.64 40.48 3.06
715 774 8.579006 AGAATAATTGACTTGCAAAATCAGTCA 58.421 29.630 12.98 12.98 40.48 3.41
716 775 8.976986 AGAATAATTGACTTGCAAAATCAGTC 57.023 30.769 11.68 10.08 40.48 3.51
717 776 9.768662 AAAGAATAATTGACTTGCAAAATCAGT 57.231 25.926 11.68 7.59 40.48 3.41
720 779 9.731519 CGAAAAGAATAATTGACTTGCAAAATC 57.268 29.630 0.00 1.74 40.48 2.17
721 780 9.260002 ACGAAAAGAATAATTGACTTGCAAAAT 57.740 25.926 0.00 0.00 40.48 1.82
722 781 8.641499 ACGAAAAGAATAATTGACTTGCAAAA 57.359 26.923 0.00 0.00 40.48 2.44
723 782 8.641499 AACGAAAAGAATAATTGACTTGCAAA 57.359 26.923 0.00 0.00 40.48 3.68
724 783 9.393249 CTAACGAAAAGAATAATTGACTTGCAA 57.607 29.630 0.00 0.00 41.53 4.08
725 784 8.564574 ACTAACGAAAAGAATAATTGACTTGCA 58.435 29.630 0.00 0.00 0.00 4.08
726 785 8.950403 ACTAACGAAAAGAATAATTGACTTGC 57.050 30.769 0.00 0.00 0.00 4.01
727 786 9.250986 CGACTAACGAAAAGAATAATTGACTTG 57.749 33.333 0.00 0.00 45.77 3.16
728 787 8.440833 CCGACTAACGAAAAGAATAATTGACTT 58.559 33.333 0.00 0.00 45.77 3.01
729 788 7.064253 CCCGACTAACGAAAAGAATAATTGACT 59.936 37.037 0.00 0.00 45.77 3.41
730 789 7.063780 TCCCGACTAACGAAAAGAATAATTGAC 59.936 37.037 0.00 0.00 45.77 3.18
731 790 7.098477 TCCCGACTAACGAAAAGAATAATTGA 58.902 34.615 0.00 0.00 45.77 2.57
732 791 7.298507 TCCCGACTAACGAAAAGAATAATTG 57.701 36.000 0.00 0.00 45.77 2.32
733 792 7.767198 TGATCCCGACTAACGAAAAGAATAATT 59.233 33.333 0.00 0.00 45.77 1.40
734 793 7.270047 TGATCCCGACTAACGAAAAGAATAAT 58.730 34.615 0.00 0.00 45.77 1.28
735 794 6.632909 TGATCCCGACTAACGAAAAGAATAA 58.367 36.000 0.00 0.00 45.77 1.40
736 795 6.211587 TGATCCCGACTAACGAAAAGAATA 57.788 37.500 0.00 0.00 45.77 1.75
737 796 5.080969 TGATCCCGACTAACGAAAAGAAT 57.919 39.130 0.00 0.00 45.77 2.40
738 797 4.524316 TGATCCCGACTAACGAAAAGAA 57.476 40.909 0.00 0.00 45.77 2.52
739 798 4.730949 ATGATCCCGACTAACGAAAAGA 57.269 40.909 0.00 0.00 45.77 2.52
740 799 6.897259 TTAATGATCCCGACTAACGAAAAG 57.103 37.500 0.00 0.00 45.77 2.27
741 800 7.167968 CGTATTAATGATCCCGACTAACGAAAA 59.832 37.037 0.00 0.00 45.77 2.29
742 801 6.638063 CGTATTAATGATCCCGACTAACGAAA 59.362 38.462 0.00 0.00 45.77 3.46
743 802 6.144854 CGTATTAATGATCCCGACTAACGAA 58.855 40.000 0.00 0.00 45.77 3.85
744 803 5.692814 CGTATTAATGATCCCGACTAACGA 58.307 41.667 0.00 0.00 45.77 3.85
745 804 4.322804 GCGTATTAATGATCCCGACTAACG 59.677 45.833 0.00 0.00 42.18 3.18
746 805 4.624452 GGCGTATTAATGATCCCGACTAAC 59.376 45.833 0.00 0.00 0.00 2.34
747 806 4.616604 CGGCGTATTAATGATCCCGACTAA 60.617 45.833 0.00 0.00 36.55 2.24
748 807 3.119743 CGGCGTATTAATGATCCCGACTA 60.120 47.826 0.00 0.00 36.55 2.59
749 808 2.352421 CGGCGTATTAATGATCCCGACT 60.352 50.000 0.00 0.00 36.55 4.18
750 809 1.990563 CGGCGTATTAATGATCCCGAC 59.009 52.381 0.00 2.39 36.55 4.79
751 810 1.670674 GCGGCGTATTAATGATCCCGA 60.671 52.381 9.37 0.00 36.55 5.14
752 811 0.719465 GCGGCGTATTAATGATCCCG 59.281 55.000 9.37 6.30 37.43 5.14
753 812 1.803334 TGCGGCGTATTAATGATCCC 58.197 50.000 9.37 0.00 0.00 3.85
754 813 2.476185 GCATGCGGCGTATTAATGATCC 60.476 50.000 8.02 0.00 0.00 3.36
755 814 2.774007 GCATGCGGCGTATTAATGATC 58.226 47.619 8.02 0.00 0.00 2.92
756 815 2.900122 GCATGCGGCGTATTAATGAT 57.100 45.000 8.02 0.00 0.00 2.45
781 840 3.308035 ACTTCCTTCCCGTTCCTTTTT 57.692 42.857 0.00 0.00 0.00 1.94
782 841 2.956333 CAACTTCCTTCCCGTTCCTTTT 59.044 45.455 0.00 0.00 0.00 2.27
783 842 2.092049 ACAACTTCCTTCCCGTTCCTTT 60.092 45.455 0.00 0.00 0.00 3.11
784 843 1.493446 ACAACTTCCTTCCCGTTCCTT 59.507 47.619 0.00 0.00 0.00 3.36
785 844 1.137697 ACAACTTCCTTCCCGTTCCT 58.862 50.000 0.00 0.00 0.00 3.36
786 845 2.038164 AGTACAACTTCCTTCCCGTTCC 59.962 50.000 0.00 0.00 0.00 3.62
787 846 3.397849 AGTACAACTTCCTTCCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
788 847 3.306571 GCTAGTACAACTTCCTTCCCGTT 60.307 47.826 0.00 0.00 0.00 4.44
789 848 2.233186 GCTAGTACAACTTCCTTCCCGT 59.767 50.000 0.00 0.00 0.00 5.28
790 849 2.232941 TGCTAGTACAACTTCCTTCCCG 59.767 50.000 0.00 0.00 0.00 5.14
791 850 3.007614 TGTGCTAGTACAACTTCCTTCCC 59.992 47.826 11.58 0.00 0.00 3.97
792 851 4.246458 CTGTGCTAGTACAACTTCCTTCC 58.754 47.826 14.85 0.00 0.00 3.46
793 852 3.680458 GCTGTGCTAGTACAACTTCCTTC 59.320 47.826 14.85 0.00 0.00 3.46
794 853 3.665190 GCTGTGCTAGTACAACTTCCTT 58.335 45.455 14.85 0.00 0.00 3.36
795 854 2.352814 CGCTGTGCTAGTACAACTTCCT 60.353 50.000 14.85 0.00 0.00 3.36
796 855 1.993370 CGCTGTGCTAGTACAACTTCC 59.007 52.381 14.85 1.19 0.00 3.46
797 856 2.673833 ACGCTGTGCTAGTACAACTTC 58.326 47.619 14.85 4.11 0.00 3.01
798 857 2.814280 ACGCTGTGCTAGTACAACTT 57.186 45.000 14.85 1.33 0.00 2.66
799 858 2.814280 AACGCTGTGCTAGTACAACT 57.186 45.000 14.85 0.00 0.00 3.16
800 859 3.057734 AGAAACGCTGTGCTAGTACAAC 58.942 45.455 14.85 9.55 0.00 3.32
801 860 3.380479 AGAAACGCTGTGCTAGTACAA 57.620 42.857 14.85 0.00 0.00 2.41
802 861 3.380479 AAGAAACGCTGTGCTAGTACA 57.620 42.857 13.33 13.33 0.00 2.90
803 862 5.834239 TTTAAGAAACGCTGTGCTAGTAC 57.166 39.130 3.70 3.70 0.00 2.73
804 863 6.160684 TGATTTAAGAAACGCTGTGCTAGTA 58.839 36.000 0.00 0.00 0.00 1.82
805 864 4.994852 TGATTTAAGAAACGCTGTGCTAGT 59.005 37.500 0.00 0.00 0.00 2.57
806 865 5.530519 TGATTTAAGAAACGCTGTGCTAG 57.469 39.130 0.00 0.00 0.00 3.42
807 866 5.106712 CCTTGATTTAAGAAACGCTGTGCTA 60.107 40.000 0.00 0.00 38.76 3.49
808 867 4.320494 CCTTGATTTAAGAAACGCTGTGCT 60.320 41.667 0.00 0.00 38.76 4.40
809 868 3.914364 CCTTGATTTAAGAAACGCTGTGC 59.086 43.478 0.00 0.00 38.76 4.57
810 869 4.215399 TCCCTTGATTTAAGAAACGCTGTG 59.785 41.667 0.00 0.00 38.76 3.66
900 960 7.360946 GCGCATATTTATAAGGAGACGGAAATT 60.361 37.037 0.30 0.00 0.00 1.82
947 1015 1.040646 CGAGGGGATTCGAGGAATGA 58.959 55.000 0.00 0.00 43.03 2.57
986 1054 0.390998 TGCCATTTGCGATCGAGACA 60.391 50.000 21.57 4.29 45.60 3.41
1009 1077 3.296709 TTTCCGCCGTGCTCCTCTC 62.297 63.158 0.00 0.00 0.00 3.20
1091 1159 1.303888 CAGGCAGCATTGGTGAGGT 60.304 57.895 19.53 0.00 32.22 3.85
1278 1349 2.357034 TTGCTCGCCACGACCTTC 60.357 61.111 0.00 0.00 0.00 3.46
1358 1435 4.318332 CAATCACTAACTCAGCCAGTTCA 58.682 43.478 1.95 0.00 42.07 3.18
1397 1478 2.733319 TAACCACGCCACGCCATTGA 62.733 55.000 0.00 0.00 0.00 2.57
1622 1703 4.124351 GCCCCGTCGTCGACATGA 62.124 66.667 24.13 2.35 39.71 3.07
1637 1718 4.373116 TCCTTGACGACGCTGGCC 62.373 66.667 0.00 0.00 0.00 5.36
1692 1773 3.039588 CGAACCACGGGACAACGG 61.040 66.667 0.00 0.00 38.39 4.44
1760 1841 1.137675 GCTTCCATTTGATCCAAGGCC 59.862 52.381 0.00 0.00 0.00 5.19
1764 1845 2.756760 GCTCTGCTTCCATTTGATCCAA 59.243 45.455 0.00 0.00 0.00 3.53
1834 1915 1.207329 GCGGTCTAACACATTCCTCCT 59.793 52.381 0.00 0.00 0.00 3.69
1841 1922 2.508439 CGCCGCGGTCTAACACAT 60.508 61.111 28.70 0.00 0.00 3.21
1842 1923 3.620300 CTCGCCGCGGTCTAACACA 62.620 63.158 28.70 0.67 0.00 3.72
1843 1924 2.609183 ATCTCGCCGCGGTCTAACAC 62.609 60.000 28.70 6.83 0.00 3.32
1844 1925 2.332362 GATCTCGCCGCGGTCTAACA 62.332 60.000 28.70 6.56 0.00 2.41
1845 1926 1.657794 GATCTCGCCGCGGTCTAAC 60.658 63.158 28.70 8.50 0.00 2.34
1846 1927 2.116533 TGATCTCGCCGCGGTCTAA 61.117 57.895 28.70 11.05 0.00 2.10
1847 1928 2.515290 TGATCTCGCCGCGGTCTA 60.515 61.111 28.70 11.57 0.00 2.59
1911 2196 1.160329 AATTGACATAGAGCGGGCGC 61.160 55.000 0.00 0.00 42.33 6.53
1912 2197 1.003545 CAAATTGACATAGAGCGGGCG 60.004 52.381 0.00 0.00 0.00 6.13
1913 2198 2.032178 GTCAAATTGACATAGAGCGGGC 59.968 50.000 20.08 0.00 46.22 6.13
1914 2199 3.951979 GTCAAATTGACATAGAGCGGG 57.048 47.619 20.08 0.00 46.22 6.13
1952 2237 5.283717 CCGACTGCAAATTAAAGTTCAATCG 59.716 40.000 0.00 0.00 0.00 3.34
1953 2238 6.378582 TCCGACTGCAAATTAAAGTTCAATC 58.621 36.000 0.00 0.00 0.00 2.67
1954 2239 6.325919 TCCGACTGCAAATTAAAGTTCAAT 57.674 33.333 0.00 0.00 0.00 2.57
2000 2289 3.322318 AAGCAAGGGAGCCGCTCTC 62.322 63.158 19.68 16.49 41.15 3.20
2001 2290 3.325753 AAGCAAGGGAGCCGCTCT 61.326 61.111 19.68 0.00 34.11 4.09
2002 2291 3.130160 CAAGCAAGGGAGCCGCTC 61.130 66.667 12.27 12.27 34.11 5.03
2006 2295 3.435186 GACGCAAGCAAGGGAGCC 61.435 66.667 0.00 0.00 45.62 4.70
2007 2296 3.793144 CGACGCAAGCAAGGGAGC 61.793 66.667 0.00 0.00 45.62 4.70
2008 2297 2.048222 TCGACGCAAGCAAGGGAG 60.048 61.111 0.00 0.00 45.62 4.30
2009 2298 2.357034 GTCGACGCAAGCAAGGGA 60.357 61.111 0.00 0.00 45.62 4.20
2010 2299 0.739462 TATGTCGACGCAAGCAAGGG 60.739 55.000 11.62 0.00 45.62 3.95
2011 2300 0.647410 CTATGTCGACGCAAGCAAGG 59.353 55.000 11.62 0.00 45.62 3.61
2012 2301 1.321743 GTCTATGTCGACGCAAGCAAG 59.678 52.381 11.62 0.63 45.62 4.01
2013 2302 1.346365 GTCTATGTCGACGCAAGCAA 58.654 50.000 11.62 0.00 45.62 3.91
2014 2303 3.030209 GTCTATGTCGACGCAAGCA 57.970 52.632 11.62 0.00 45.62 3.91
2021 2310 0.806868 TGGTCACCGTCTATGTCGAC 59.193 55.000 9.11 9.11 0.00 4.20
2022 2311 1.471287 CTTGGTCACCGTCTATGTCGA 59.529 52.381 0.00 0.00 0.00 4.20
2023 2312 1.471287 TCTTGGTCACCGTCTATGTCG 59.529 52.381 0.00 0.00 0.00 4.35
2024 2313 2.230508 TGTCTTGGTCACCGTCTATGTC 59.769 50.000 0.00 0.00 0.00 3.06
2025 2314 2.244695 TGTCTTGGTCACCGTCTATGT 58.755 47.619 0.00 0.00 0.00 2.29
2026 2315 3.526931 ATGTCTTGGTCACCGTCTATG 57.473 47.619 0.00 0.00 0.00 2.23
2027 2316 4.338682 GTCTATGTCTTGGTCACCGTCTAT 59.661 45.833 0.00 0.00 0.00 1.98
2028 2317 3.693085 GTCTATGTCTTGGTCACCGTCTA 59.307 47.826 0.00 0.00 0.00 2.59
2029 2318 2.492484 GTCTATGTCTTGGTCACCGTCT 59.508 50.000 0.00 0.00 0.00 4.18
2030 2319 2.731341 CGTCTATGTCTTGGTCACCGTC 60.731 54.545 0.00 0.00 0.00 4.79
2031 2320 1.201647 CGTCTATGTCTTGGTCACCGT 59.798 52.381 0.00 0.00 0.00 4.83
2032 2321 1.909376 CGTCTATGTCTTGGTCACCG 58.091 55.000 0.00 0.00 0.00 4.94
2033 2322 1.641577 GCGTCTATGTCTTGGTCACC 58.358 55.000 0.00 0.00 0.00 4.02
2034 2323 1.269166 CGCGTCTATGTCTTGGTCAC 58.731 55.000 0.00 0.00 0.00 3.67
2035 2324 0.172578 CCGCGTCTATGTCTTGGTCA 59.827 55.000 4.92 0.00 0.00 4.02
2036 2325 1.146358 GCCGCGTCTATGTCTTGGTC 61.146 60.000 4.92 0.00 0.00 4.02
2037 2326 1.153628 GCCGCGTCTATGTCTTGGT 60.154 57.895 4.92 0.00 0.00 3.67
2038 2327 0.739462 TTGCCGCGTCTATGTCTTGG 60.739 55.000 4.92 0.00 0.00 3.61
2039 2328 0.370273 GTTGCCGCGTCTATGTCTTG 59.630 55.000 4.92 0.00 0.00 3.02
2040 2329 0.037697 TGTTGCCGCGTCTATGTCTT 60.038 50.000 4.92 0.00 0.00 3.01
2041 2330 0.458543 CTGTTGCCGCGTCTATGTCT 60.459 55.000 4.92 0.00 0.00 3.41
2042 2331 0.457853 TCTGTTGCCGCGTCTATGTC 60.458 55.000 4.92 0.00 0.00 3.06
2043 2332 0.037697 TTCTGTTGCCGCGTCTATGT 60.038 50.000 4.92 0.00 0.00 2.29
2044 2333 1.004610 CATTCTGTTGCCGCGTCTATG 60.005 52.381 4.92 0.00 0.00 2.23
2045 2334 1.290203 CATTCTGTTGCCGCGTCTAT 58.710 50.000 4.92 0.00 0.00 1.98
2046 2335 1.358725 GCATTCTGTTGCCGCGTCTA 61.359 55.000 4.92 0.00 36.60 2.59
2047 2336 2.680913 GCATTCTGTTGCCGCGTCT 61.681 57.895 4.92 0.00 36.60 4.18
2048 2337 2.202349 GCATTCTGTTGCCGCGTC 60.202 61.111 4.92 0.00 36.60 5.19
2049 2338 2.462255 CTTGCATTCTGTTGCCGCGT 62.462 55.000 4.92 0.00 42.06 6.01
2050 2339 1.798725 CTTGCATTCTGTTGCCGCG 60.799 57.895 0.00 0.00 42.06 6.46
2051 2340 1.444895 CCTTGCATTCTGTTGCCGC 60.445 57.895 0.00 0.00 42.06 6.53
2052 2341 0.597568 TTCCTTGCATTCTGTTGCCG 59.402 50.000 0.00 0.00 42.06 5.69
2053 2342 1.340889 TGTTCCTTGCATTCTGTTGCC 59.659 47.619 0.00 0.00 42.06 4.52
2054 2343 2.397549 GTGTTCCTTGCATTCTGTTGC 58.602 47.619 0.00 0.00 43.07 4.17
2055 2344 2.290367 TCGTGTTCCTTGCATTCTGTTG 59.710 45.455 0.00 0.00 0.00 3.33
2056 2345 2.571212 TCGTGTTCCTTGCATTCTGTT 58.429 42.857 0.00 0.00 0.00 3.16
2057 2346 2.254546 TCGTGTTCCTTGCATTCTGT 57.745 45.000 0.00 0.00 0.00 3.41
2058 2347 2.807967 TCTTCGTGTTCCTTGCATTCTG 59.192 45.455 0.00 0.00 0.00 3.02
2059 2348 2.808543 GTCTTCGTGTTCCTTGCATTCT 59.191 45.455 0.00 0.00 0.00 2.40
2060 2349 2.548057 TGTCTTCGTGTTCCTTGCATTC 59.452 45.455 0.00 0.00 0.00 2.67
2061 2350 2.571212 TGTCTTCGTGTTCCTTGCATT 58.429 42.857 0.00 0.00 0.00 3.56
2062 2351 2.254546 TGTCTTCGTGTTCCTTGCAT 57.745 45.000 0.00 0.00 0.00 3.96
2063 2352 1.668751 GTTGTCTTCGTGTTCCTTGCA 59.331 47.619 0.00 0.00 0.00 4.08
2064 2353 1.332904 CGTTGTCTTCGTGTTCCTTGC 60.333 52.381 0.00 0.00 0.00 4.01
2065 2354 2.198406 TCGTTGTCTTCGTGTTCCTTG 58.802 47.619 0.00 0.00 0.00 3.61
2066 2355 2.470821 CTCGTTGTCTTCGTGTTCCTT 58.529 47.619 0.00 0.00 0.00 3.36
2067 2356 1.269621 CCTCGTTGTCTTCGTGTTCCT 60.270 52.381 0.00 0.00 0.00 3.36
2068 2357 1.137513 CCTCGTTGTCTTCGTGTTCC 58.862 55.000 0.00 0.00 0.00 3.62
2069 2358 2.052157 CTCCTCGTTGTCTTCGTGTTC 58.948 52.381 0.00 0.00 0.00 3.18
2070 2359 1.269621 CCTCCTCGTTGTCTTCGTGTT 60.270 52.381 0.00 0.00 0.00 3.32
2071 2360 0.314302 CCTCCTCGTTGTCTTCGTGT 59.686 55.000 0.00 0.00 0.00 4.49
2072 2361 0.596577 TCCTCCTCGTTGTCTTCGTG 59.403 55.000 0.00 0.00 0.00 4.35
2073 2362 0.597072 GTCCTCCTCGTTGTCTTCGT 59.403 55.000 0.00 0.00 0.00 3.85
2074 2363 0.454620 CGTCCTCCTCGTTGTCTTCG 60.455 60.000 0.00 0.00 0.00 3.79
2075 2364 0.879765 TCGTCCTCCTCGTTGTCTTC 59.120 55.000 0.00 0.00 0.00 2.87
2076 2365 1.202582 CATCGTCCTCCTCGTTGTCTT 59.797 52.381 0.00 0.00 0.00 3.01
2077 2366 0.811915 CATCGTCCTCCTCGTTGTCT 59.188 55.000 0.00 0.00 0.00 3.41
2078 2367 0.809385 TCATCGTCCTCCTCGTTGTC 59.191 55.000 0.00 0.00 32.27 3.18
2079 2368 0.811915 CTCATCGTCCTCCTCGTTGT 59.188 55.000 0.00 0.00 32.27 3.32
2080 2369 0.101399 CCTCATCGTCCTCCTCGTTG 59.899 60.000 0.00 0.00 0.00 4.10
2081 2370 0.034380 TCCTCATCGTCCTCCTCGTT 60.034 55.000 0.00 0.00 0.00 3.85
2082 2371 0.464735 CTCCTCATCGTCCTCCTCGT 60.465 60.000 0.00 0.00 0.00 4.18
2083 2372 1.169661 CCTCCTCATCGTCCTCCTCG 61.170 65.000 0.00 0.00 0.00 4.63
2084 2373 0.183971 TCCTCCTCATCGTCCTCCTC 59.816 60.000 0.00 0.00 0.00 3.71
2085 2374 0.631753 TTCCTCCTCATCGTCCTCCT 59.368 55.000 0.00 0.00 0.00 3.69
2086 2375 1.342819 CATTCCTCCTCATCGTCCTCC 59.657 57.143 0.00 0.00 0.00 4.30
2087 2376 1.270041 GCATTCCTCCTCATCGTCCTC 60.270 57.143 0.00 0.00 0.00 3.71
2088 2377 0.755686 GCATTCCTCCTCATCGTCCT 59.244 55.000 0.00 0.00 0.00 3.85
2089 2378 0.598680 CGCATTCCTCCTCATCGTCC 60.599 60.000 0.00 0.00 0.00 4.79
2090 2379 0.103208 ACGCATTCCTCCTCATCGTC 59.897 55.000 0.00 0.00 0.00 4.20
2091 2380 0.179100 CACGCATTCCTCCTCATCGT 60.179 55.000 0.00 0.00 0.00 3.73
2092 2381 0.103026 TCACGCATTCCTCCTCATCG 59.897 55.000 0.00 0.00 0.00 3.84
2093 2382 1.410517 TCTCACGCATTCCTCCTCATC 59.589 52.381 0.00 0.00 0.00 2.92
2094 2383 1.137872 GTCTCACGCATTCCTCCTCAT 59.862 52.381 0.00 0.00 0.00 2.90
2095 2384 0.532573 GTCTCACGCATTCCTCCTCA 59.467 55.000 0.00 0.00 0.00 3.86
2096 2385 0.179097 GGTCTCACGCATTCCTCCTC 60.179 60.000 0.00 0.00 0.00 3.71
2097 2386 1.901085 GGTCTCACGCATTCCTCCT 59.099 57.895 0.00 0.00 0.00 3.69
2098 2387 1.519455 CGGTCTCACGCATTCCTCC 60.519 63.158 0.00 0.00 0.00 4.30
2099 2388 4.094684 CGGTCTCACGCATTCCTC 57.905 61.111 0.00 0.00 0.00 3.71
2108 2397 4.194720 ATCTCGCCGCGGTCTCAC 62.195 66.667 28.70 8.50 0.00 3.51
2109 2398 3.889044 GATCTCGCCGCGGTCTCA 61.889 66.667 28.70 9.36 0.00 3.27
2110 2399 3.889044 TGATCTCGCCGCGGTCTC 61.889 66.667 28.70 16.02 0.00 3.36
2111 2400 4.194720 GTGATCTCGCCGCGGTCT 62.195 66.667 28.70 6.90 0.00 3.85
2112 2401 3.982372 TTGTGATCTCGCCGCGGTC 62.982 63.158 28.70 16.55 0.00 4.79
2113 2402 3.989698 CTTGTGATCTCGCCGCGGT 62.990 63.158 28.70 5.80 0.00 5.68
2114 2403 3.257561 CTTGTGATCTCGCCGCGG 61.258 66.667 24.05 24.05 0.00 6.46
2115 2404 3.918220 GCTTGTGATCTCGCCGCG 61.918 66.667 6.39 6.39 0.00 6.46
2116 2405 2.510238 AGCTTGTGATCTCGCCGC 60.510 61.111 0.00 0.00 0.00 6.53
2117 2406 2.226896 CGAGCTTGTGATCTCGCCG 61.227 63.158 0.00 0.00 44.30 6.46
2118 2407 3.698382 CGAGCTTGTGATCTCGCC 58.302 61.111 0.00 0.00 44.30 5.54
2121 2410 2.223618 GGTACCTCGAGCTTGTGATCTC 60.224 54.545 6.99 0.00 0.00 2.75
2122 2411 1.751924 GGTACCTCGAGCTTGTGATCT 59.248 52.381 6.99 0.00 0.00 2.75
2123 2412 1.534175 CGGTACCTCGAGCTTGTGATC 60.534 57.143 10.90 0.00 0.00 2.92
2124 2413 0.456221 CGGTACCTCGAGCTTGTGAT 59.544 55.000 10.90 0.00 0.00 3.06
2125 2414 0.892358 ACGGTACCTCGAGCTTGTGA 60.892 55.000 10.90 0.00 0.00 3.58
2126 2415 0.456312 GACGGTACCTCGAGCTTGTG 60.456 60.000 10.90 0.00 0.00 3.33
2127 2416 1.593296 GGACGGTACCTCGAGCTTGT 61.593 60.000 10.90 2.14 0.00 3.16
2128 2417 1.139095 GGACGGTACCTCGAGCTTG 59.861 63.158 10.90 0.00 0.00 4.01
2129 2418 1.303888 TGGACGGTACCTCGAGCTT 60.304 57.895 10.90 0.00 0.00 3.74
2130 2419 2.045131 GTGGACGGTACCTCGAGCT 61.045 63.158 10.90 0.00 0.00 4.09
2131 2420 1.991099 GAGTGGACGGTACCTCGAGC 61.991 65.000 10.90 0.00 0.00 5.03
2132 2421 1.703438 CGAGTGGACGGTACCTCGAG 61.703 65.000 19.96 5.13 36.57 4.04
2133 2422 1.742880 CGAGTGGACGGTACCTCGA 60.743 63.158 19.96 1.26 36.57 4.04
2134 2423 2.037136 ACGAGTGGACGGTACCTCG 61.037 63.158 21.81 21.81 39.77 4.63
2135 2424 1.505353 CACGAGTGGACGGTACCTC 59.495 63.158 10.90 6.58 37.61 3.85
2136 2425 2.633509 GCACGAGTGGACGGTACCT 61.634 63.158 10.90 0.00 37.61 3.08
2137 2426 2.126189 GCACGAGTGGACGGTACC 60.126 66.667 0.16 0.16 37.61 3.34
2138 2427 2.126189 GGCACGAGTGGACGGTAC 60.126 66.667 5.32 0.00 37.61 3.34
2185 2474 0.730494 GCGTCAAATTGGCACAGAGC 60.730 55.000 0.00 0.00 42.39 4.09
2186 2475 0.877071 AGCGTCAAATTGGCACAGAG 59.123 50.000 0.00 0.00 42.39 3.35
2187 2476 0.592637 CAGCGTCAAATTGGCACAGA 59.407 50.000 0.00 0.00 42.39 3.41
2188 2477 0.311790 ACAGCGTCAAATTGGCACAG 59.688 50.000 0.00 0.00 42.39 3.66
2189 2478 0.310543 GACAGCGTCAAATTGGCACA 59.689 50.000 0.00 0.00 32.09 4.57
2190 2479 0.387239 GGACAGCGTCAAATTGGCAC 60.387 55.000 0.00 0.00 33.68 5.01
2191 2480 0.537143 AGGACAGCGTCAAATTGGCA 60.537 50.000 0.00 0.00 33.68 4.92
2192 2481 0.109597 CAGGACAGCGTCAAATTGGC 60.110 55.000 10.14 0.00 33.68 4.52
2193 2482 1.522668 TCAGGACAGCGTCAAATTGG 58.477 50.000 10.14 0.00 33.68 3.16
2194 2483 2.549754 AGTTCAGGACAGCGTCAAATTG 59.450 45.455 10.14 0.00 33.68 2.32
2195 2484 2.549754 CAGTTCAGGACAGCGTCAAATT 59.450 45.455 10.14 0.00 33.68 1.82
2196 2485 2.146342 CAGTTCAGGACAGCGTCAAAT 58.854 47.619 10.14 0.00 33.68 2.32
2197 2486 1.138069 TCAGTTCAGGACAGCGTCAAA 59.862 47.619 10.14 0.65 33.68 2.69
2198 2487 0.750249 TCAGTTCAGGACAGCGTCAA 59.250 50.000 10.14 0.00 33.68 3.18
2199 2488 0.750249 TTCAGTTCAGGACAGCGTCA 59.250 50.000 10.14 0.00 33.68 4.35
2200 2489 2.086054 ATTCAGTTCAGGACAGCGTC 57.914 50.000 0.79 0.79 0.00 5.19
2201 2490 2.417719 GAATTCAGTTCAGGACAGCGT 58.582 47.619 0.00 0.00 36.80 5.07
2202 2491 1.734465 GGAATTCAGTTCAGGACAGCG 59.266 52.381 7.93 0.00 38.64 5.18
2203 2492 2.087646 GGGAATTCAGTTCAGGACAGC 58.912 52.381 7.93 0.00 38.64 4.40
2204 2493 3.423539 TGGGAATTCAGTTCAGGACAG 57.576 47.619 7.93 0.00 38.64 3.51
2205 2494 4.081406 CAATGGGAATTCAGTTCAGGACA 58.919 43.478 7.93 0.00 38.64 4.02
2206 2495 4.335416 TCAATGGGAATTCAGTTCAGGAC 58.665 43.478 7.93 0.00 38.64 3.85
2207 2496 4.656100 TCAATGGGAATTCAGTTCAGGA 57.344 40.909 7.93 0.50 38.64 3.86
2208 2497 5.927281 AATCAATGGGAATTCAGTTCAGG 57.073 39.130 7.93 0.00 38.64 3.86
2209 2498 6.091713 GCAAAATCAATGGGAATTCAGTTCAG 59.908 38.462 7.93 0.00 38.64 3.02
2210 2499 5.933463 GCAAAATCAATGGGAATTCAGTTCA 59.067 36.000 7.93 0.44 38.64 3.18
2211 2500 5.933463 TGCAAAATCAATGGGAATTCAGTTC 59.067 36.000 7.93 0.00 36.04 3.01
2212 2501 5.867330 TGCAAAATCAATGGGAATTCAGTT 58.133 33.333 7.93 0.00 0.00 3.16
2213 2502 5.012354 ACTGCAAAATCAATGGGAATTCAGT 59.988 36.000 7.93 0.00 0.00 3.41
2214 2503 5.484715 ACTGCAAAATCAATGGGAATTCAG 58.515 37.500 7.93 0.00 0.00 3.02
2215 2504 5.481105 GACTGCAAAATCAATGGGAATTCA 58.519 37.500 7.93 0.00 0.00 2.57
2216 2505 4.872124 GGACTGCAAAATCAATGGGAATTC 59.128 41.667 0.00 0.00 0.00 2.17
2217 2506 4.621274 CGGACTGCAAAATCAATGGGAATT 60.621 41.667 0.00 0.00 0.00 2.17
2218 2507 3.119029 CGGACTGCAAAATCAATGGGAAT 60.119 43.478 0.00 0.00 0.00 3.01
2219 2508 2.230992 CGGACTGCAAAATCAATGGGAA 59.769 45.455 0.00 0.00 0.00 3.97
2220 2509 1.818060 CGGACTGCAAAATCAATGGGA 59.182 47.619 0.00 0.00 0.00 4.37
2221 2510 1.818060 TCGGACTGCAAAATCAATGGG 59.182 47.619 0.00 0.00 0.00 4.00
2222 2511 2.159338 CCTCGGACTGCAAAATCAATGG 60.159 50.000 0.00 0.00 0.00 3.16
2223 2512 2.733227 GCCTCGGACTGCAAAATCAATG 60.733 50.000 0.00 0.00 0.00 2.82
2224 2513 1.474077 GCCTCGGACTGCAAAATCAAT 59.526 47.619 0.00 0.00 0.00 2.57
2225 2514 0.881118 GCCTCGGACTGCAAAATCAA 59.119 50.000 0.00 0.00 0.00 2.57
2226 2515 1.298157 CGCCTCGGACTGCAAAATCA 61.298 55.000 0.00 0.00 0.00 2.57
2227 2516 1.019278 TCGCCTCGGACTGCAAAATC 61.019 55.000 0.00 0.00 0.00 2.17
2228 2517 0.605319 TTCGCCTCGGACTGCAAAAT 60.605 50.000 0.00 0.00 0.00 1.82
2229 2518 1.227704 TTCGCCTCGGACTGCAAAA 60.228 52.632 0.00 0.00 0.00 2.44
2230 2519 1.667830 CTTCGCCTCGGACTGCAAA 60.668 57.895 0.00 0.00 0.00 3.68
2231 2520 2.048222 CTTCGCCTCGGACTGCAA 60.048 61.111 0.00 0.00 0.00 4.08
2232 2521 2.989253 TCTTCGCCTCGGACTGCA 60.989 61.111 0.00 0.00 0.00 4.41
2233 2522 2.202676 CTCTTCGCCTCGGACTGC 60.203 66.667 0.00 0.00 0.00 4.40
2234 2523 2.202676 GCTCTTCGCCTCGGACTG 60.203 66.667 0.00 0.00 0.00 3.51
2235 2524 3.816524 CGCTCTTCGCCTCGGACT 61.817 66.667 0.00 0.00 34.21 3.85
2236 2525 3.812019 TCGCTCTTCGCCTCGGAC 61.812 66.667 0.00 0.00 38.27 4.79
2237 2526 3.812019 GTCGCTCTTCGCCTCGGA 61.812 66.667 0.00 0.00 38.27 4.55
2238 2527 3.417275 ATGTCGCTCTTCGCCTCGG 62.417 63.158 0.00 0.00 38.27 4.63
2239 2528 1.941734 GATGTCGCTCTTCGCCTCG 60.942 63.158 0.00 0.00 38.27 4.63
2240 2529 0.593773 GAGATGTCGCTCTTCGCCTC 60.594 60.000 0.00 0.00 38.27 4.70
2241 2530 1.435515 GAGATGTCGCTCTTCGCCT 59.564 57.895 0.00 0.00 38.27 5.52
2242 2531 1.590259 GGAGATGTCGCTCTTCGCC 60.590 63.158 0.00 2.18 38.27 5.54
2243 2532 0.593773 GAGGAGATGTCGCTCTTCGC 60.594 60.000 0.00 0.00 38.27 4.70
2244 2533 3.542825 GAGGAGATGTCGCTCTTCG 57.457 57.895 0.00 0.00 32.44 3.79
2245 2534 0.030101 CCGAGGAGATGTCGCTCTTC 59.970 60.000 0.00 0.00 37.58 2.87
2246 2535 0.394488 TCCGAGGAGATGTCGCTCTT 60.394 55.000 6.74 0.00 36.06 2.85
2247 2536 0.817634 CTCCGAGGAGATGTCGCTCT 60.818 60.000 13.69 0.00 44.53 4.09
2248 2537 0.816018 TCTCCGAGGAGATGTCGCTC 60.816 60.000 17.24 0.00 45.26 5.03
2249 2538 1.224870 TCTCCGAGGAGATGTCGCT 59.775 57.895 17.24 0.00 45.26 4.93
2250 2539 3.829048 TCTCCGAGGAGATGTCGC 58.171 61.111 17.24 0.00 45.26 5.19
2380 2681 4.681421 CACGCCTTGCTCTCTTCA 57.319 55.556 0.00 0.00 0.00 3.02
2554 2855 0.250513 GGTTGGAGACGAGATTGGCT 59.749 55.000 0.00 0.00 0.00 4.75
2560 2861 0.679505 CCTTGTGGTTGGAGACGAGA 59.320 55.000 0.00 0.00 0.00 4.04
2570 2871 2.494059 CAACGACTCATCCTTGTGGTT 58.506 47.619 0.00 0.00 35.96 3.67
2581 2882 1.905637 TCTACCTGAGCAACGACTCA 58.094 50.000 7.21 7.21 44.32 3.41
2588 2889 1.270625 CCGTTGGTTCTACCTGAGCAA 60.271 52.381 0.00 0.00 39.58 3.91
2623 2924 9.774413 GTGGGTTGCTAGTAGTGTTAATTATAT 57.226 33.333 0.00 0.00 0.00 0.86
2624 2925 8.760735 TGTGGGTTGCTAGTAGTGTTAATTATA 58.239 33.333 0.00 0.00 0.00 0.98
2625 2926 7.626390 TGTGGGTTGCTAGTAGTGTTAATTAT 58.374 34.615 0.00 0.00 0.00 1.28
2626 2927 7.006865 TGTGGGTTGCTAGTAGTGTTAATTA 57.993 36.000 0.00 0.00 0.00 1.40
2627 2928 5.871834 TGTGGGTTGCTAGTAGTGTTAATT 58.128 37.500 0.00 0.00 0.00 1.40
2630 2931 4.285003 ACATGTGGGTTGCTAGTAGTGTTA 59.715 41.667 0.00 0.00 0.00 2.41
2631 2932 3.072476 ACATGTGGGTTGCTAGTAGTGTT 59.928 43.478 0.00 0.00 0.00 3.32
2632 2933 2.637872 ACATGTGGGTTGCTAGTAGTGT 59.362 45.455 0.00 0.00 0.00 3.55
2634 2935 3.197116 GGTACATGTGGGTTGCTAGTAGT 59.803 47.826 9.11 0.00 0.00 2.73
2636 2937 3.174779 TGGTACATGTGGGTTGCTAGTA 58.825 45.455 9.11 0.00 0.00 1.82
2637 2938 1.982226 TGGTACATGTGGGTTGCTAGT 59.018 47.619 9.11 0.00 0.00 2.57
2639 2940 3.265737 AGATTGGTACATGTGGGTTGCTA 59.734 43.478 9.11 0.00 39.30 3.49
2640 2941 2.041620 AGATTGGTACATGTGGGTTGCT 59.958 45.455 9.11 0.00 39.30 3.91
2642 2943 5.105917 GGTTTAGATTGGTACATGTGGGTTG 60.106 44.000 9.11 0.00 39.30 3.77
2643 2944 5.014202 GGTTTAGATTGGTACATGTGGGTT 58.986 41.667 9.11 0.00 39.30 4.11
2644 2945 4.291249 AGGTTTAGATTGGTACATGTGGGT 59.709 41.667 9.11 0.00 39.30 4.51
2645 2946 4.640201 CAGGTTTAGATTGGTACATGTGGG 59.360 45.833 9.11 0.00 39.30 4.61
2646 2947 5.253330 ACAGGTTTAGATTGGTACATGTGG 58.747 41.667 9.11 0.00 39.30 4.17
2647 2948 5.063438 CGACAGGTTTAGATTGGTACATGTG 59.937 44.000 9.11 0.00 39.30 3.21
2648 2949 5.046878 TCGACAGGTTTAGATTGGTACATGT 60.047 40.000 2.69 2.69 39.30 3.21
2649 2950 5.416083 TCGACAGGTTTAGATTGGTACATG 58.584 41.667 0.00 0.00 39.30 3.21
2650 2951 5.670792 TCGACAGGTTTAGATTGGTACAT 57.329 39.130 0.00 0.00 39.30 2.29
2653 2954 8.316214 ACTTTTATCGACAGGTTTAGATTGGTA 58.684 33.333 0.00 0.00 0.00 3.25
2654 2955 7.166167 ACTTTTATCGACAGGTTTAGATTGGT 58.834 34.615 0.00 0.00 0.00 3.67
2662 2964 6.527423 TGGTTCTACTTTTATCGACAGGTTT 58.473 36.000 0.00 0.00 0.00 3.27
2664 2966 5.733620 TGGTTCTACTTTTATCGACAGGT 57.266 39.130 0.00 0.00 0.00 4.00
2666 2968 5.061808 CCGTTGGTTCTACTTTTATCGACAG 59.938 44.000 0.00 0.00 0.00 3.51
2690 2992 4.265073 ACTTTTATCTGAGCATGGTGACC 58.735 43.478 0.00 0.00 0.00 4.02
2693 3698 6.037610 GGTTCTACTTTTATCTGAGCATGGTG 59.962 42.308 0.00 0.00 0.00 4.17
2695 3700 6.115446 TGGTTCTACTTTTATCTGAGCATGG 58.885 40.000 0.00 0.00 0.00 3.66
2696 3701 7.467623 GTTGGTTCTACTTTTATCTGAGCATG 58.532 38.462 0.00 0.00 0.00 4.06
2698 3703 5.637810 CGTTGGTTCTACTTTTATCTGAGCA 59.362 40.000 0.00 0.00 0.00 4.26
2699 3704 5.063564 CCGTTGGTTCTACTTTTATCTGAGC 59.936 44.000 0.00 0.00 0.00 4.26
2700 3705 6.310711 GTCCGTTGGTTCTACTTTTATCTGAG 59.689 42.308 0.00 0.00 0.00 3.35
2701 3706 6.161381 GTCCGTTGGTTCTACTTTTATCTGA 58.839 40.000 0.00 0.00 0.00 3.27
2702 3707 5.350640 GGTCCGTTGGTTCTACTTTTATCTG 59.649 44.000 0.00 0.00 0.00 2.90
2703 3708 5.485620 GGTCCGTTGGTTCTACTTTTATCT 58.514 41.667 0.00 0.00 0.00 1.98
2705 3710 4.248058 CGGTCCGTTGGTTCTACTTTTAT 58.752 43.478 2.08 0.00 0.00 1.40
2706 3711 3.652274 CGGTCCGTTGGTTCTACTTTTA 58.348 45.455 2.08 0.00 0.00 1.52
2710 5442 1.291272 GCGGTCCGTTGGTTCTACT 59.709 57.895 13.94 0.00 0.00 2.57
2712 5444 2.259204 CGCGGTCCGTTGGTTCTA 59.741 61.111 13.94 0.00 0.00 2.10
2713 5445 4.675029 CCGCGGTCCGTTGGTTCT 62.675 66.667 19.50 0.00 34.38 3.01
2714 5446 4.668118 TCCGCGGTCCGTTGGTTC 62.668 66.667 27.15 0.12 34.38 3.62
2764 5496 1.064389 GGGAGTAGAAAAGCCAGCCAT 60.064 52.381 0.00 0.00 0.00 4.40
2765 5497 0.328258 GGGAGTAGAAAAGCCAGCCA 59.672 55.000 0.00 0.00 0.00 4.75
2767 5499 1.407575 GGAGGGAGTAGAAAAGCCAGC 60.408 57.143 0.00 0.00 0.00 4.85
2824 5598 9.466497 AATATGTAATGAAATCACACTGAGGTT 57.534 29.630 0.00 0.00 0.00 3.50
2859 5637 0.729116 GGAGTTCGGTGTGCATGATG 59.271 55.000 0.00 0.00 0.00 3.07
2871 5649 8.553459 AAAAGGCTTATATATCATGGAGTTCG 57.447 34.615 0.00 0.00 0.00 3.95
2894 5672 7.640597 TGTCTCTACCGATGAAATCTCTAAA 57.359 36.000 0.00 0.00 42.58 1.85
2900 5678 6.978659 TGTATGTTGTCTCTACCGATGAAATC 59.021 38.462 0.00 0.00 40.89 2.17
2904 5682 5.190677 TCTGTATGTTGTCTCTACCGATGA 58.809 41.667 0.00 0.00 0.00 2.92
2910 5688 7.255312 CCCTCTACATCTGTATGTTGTCTCTAC 60.255 44.444 0.00 0.00 44.07 2.59
2916 5694 5.955959 TGTACCCTCTACATCTGTATGTTGT 59.044 40.000 0.00 0.00 44.07 3.32
2918 5696 7.344612 TGAATGTACCCTCTACATCTGTATGTT 59.655 37.037 0.00 0.00 44.07 2.71
2921 5699 7.069986 AGTGAATGTACCCTCTACATCTGTAT 58.930 38.462 0.00 0.00 37.18 2.29
2957 5735 8.319057 AGAGATTTCAATACGGGCCATATATA 57.681 34.615 4.39 0.00 0.00 0.86
2958 5736 7.200434 AGAGATTTCAATACGGGCCATATAT 57.800 36.000 4.39 0.00 0.00 0.86
3007 5785 6.567687 ACAGTCACTATAGGATCGAATGAG 57.432 41.667 14.14 0.00 0.00 2.90
3008 5786 6.961360 AACAGTCACTATAGGATCGAATGA 57.039 37.500 14.14 1.84 0.00 2.57
3009 5787 9.698309 ATAAAACAGTCACTATAGGATCGAATG 57.302 33.333 4.43 7.08 0.00 2.67
3022 5838 9.209175 CTAGACAAAGCTAATAAAACAGTCACT 57.791 33.333 0.00 0.00 0.00 3.41
3152 5970 1.480954 AGCGATCCGTCCAAATACACT 59.519 47.619 0.00 0.00 0.00 3.55
3165 5983 1.227002 GTCAAGGGTCGAGCGATCC 60.227 63.158 14.07 14.07 45.49 3.36
3183 6001 3.077695 ACCCCTGATAGATACCTAGTGGG 59.922 52.174 0.00 0.00 41.89 4.61
3200 6018 1.228154 GGTCAAGTTTGCGACCCCT 60.228 57.895 0.00 0.00 45.03 4.79
3301 6119 2.415491 CCGACAGCGTCATCAAAGTCTA 60.415 50.000 8.91 0.00 35.23 2.59
3565 6392 5.979517 GCAGGCATTCAAATATTCAAGGTAC 59.020 40.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.