Multiple sequence alignment - TraesCS6A01G357300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G357300 chr6A 100.000 4477 0 0 372 4848 587800542 587796066 0.000000e+00 8268.0
1 TraesCS6A01G357300 chr6A 100.000 570 0 0 5270 5839 587795644 587795075 0.000000e+00 1053.0
2 TraesCS6A01G357300 chr6A 100.000 271 0 0 1 271 587800913 587800643 8.740000e-138 501.0
3 TraesCS6A01G357300 chr6D 92.530 3976 179 52 916 4848 438908723 438904823 0.000000e+00 5589.0
4 TraesCS6A01G357300 chr6D 98.246 570 10 0 5270 5839 438904108 438903539 0.000000e+00 998.0
5 TraesCS6A01G357300 chr6D 91.304 69 4 1 720 788 438908865 438908799 6.230000e-15 93.5
6 TraesCS6A01G357300 chr6B 96.024 3270 98 17 1596 4848 664232768 664229514 0.000000e+00 5289.0
7 TraesCS6A01G357300 chr6B 97.719 570 13 0 5270 5839 664228963 664228394 0.000000e+00 981.0
8 TraesCS6A01G357300 chr6B 87.176 694 49 15 865 1536 664233438 664232763 0.000000e+00 752.0
9 TraesCS6A01G357300 chr6B 79.433 282 27 13 429 707 664234006 664233753 2.800000e-38 171.0
10 TraesCS6A01G357300 chrUn 100.000 72 0 0 372 443 471088231 471088302 3.670000e-27 134.0
11 TraesCS6A01G357300 chrUn 100.000 51 0 0 377 427 50586983 50586933 1.730000e-15 95.3
12 TraesCS6A01G357300 chrUn 100.000 51 0 0 377 427 243391370 243391320 1.730000e-15 95.3
13 TraesCS6A01G357300 chrUn 100.000 51 0 0 377 427 278339214 278339264 1.730000e-15 95.3
14 TraesCS6A01G357300 chrUn 100.000 51 0 0 377 427 278346491 278346541 1.730000e-15 95.3
15 TraesCS6A01G357300 chr3A 92.208 77 2 4 377 450 68123037 68123112 8.000000e-19 106.0
16 TraesCS6A01G357300 chr2B 100.000 52 0 0 377 428 184408776 184408827 4.820000e-16 97.1
17 TraesCS6A01G357300 chr5D 92.647 68 2 3 377 441 303929189 303929122 1.730000e-15 95.3
18 TraesCS6A01G357300 chr5A 100.000 51 0 0 377 427 616480346 616480396 1.730000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G357300 chr6A 587795075 587800913 5838 True 3274.000000 8268 100.000000 1 5839 3 chr6A.!!$R1 5838
1 TraesCS6A01G357300 chr6D 438903539 438908865 5326 True 2226.833333 5589 94.026667 720 5839 3 chr6D.!!$R1 5119
2 TraesCS6A01G357300 chr6B 664228394 664234006 5612 True 1798.250000 5289 90.088000 429 5839 4 chr6B.!!$R1 5410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.037419 CCCATGTTTTCCTTTGCGGG 60.037 55.000 0.00 0.00 0.00 6.13 F
265 266 0.037882 CTCAGACCGTGCATGTCAGT 60.038 55.000 18.14 4.33 35.15 3.41 F
270 271 0.106708 ACCGTGCATGTCAGTGTCTT 59.893 50.000 4.96 0.00 0.00 3.01 F
420 421 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70 F
585 588 0.235926 GTGAAAGCAACTGACGGCTC 59.764 55.000 0.00 0.00 40.01 4.70 F
1303 1488 0.249363 GGCGGATAACGTTCCCTCTC 60.249 60.000 2.82 0.17 46.52 3.20 F
1847 2048 0.459585 GCCTTGCGAACGATACCTCA 60.460 55.000 0.00 0.00 0.00 3.86 F
2184 2386 0.734889 CGAAATGGTCCACTGCATCC 59.265 55.000 0.00 0.00 0.00 3.51 F
3314 3528 0.603569 CGAGGAGATGGTATTCCGGG 59.396 60.000 0.00 0.00 38.54 5.73 F
4520 4735 1.888512 GTTGCCTGCAATTCCTCTGAA 59.111 47.619 7.94 0.00 38.28 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1765 0.108851 GGCCAGGGTGTAAAAATGCG 60.109 55.000 0.00 0.0 0.00 4.73 R
2174 2376 0.325933 TGGACTTCAGGATGCAGTGG 59.674 55.000 0.00 0.0 44.30 4.00 R
2184 2386 3.223661 AGCTTTCGCTGGACTTCAG 57.776 52.632 0.00 0.0 46.86 3.02 R
2282 2484 1.673033 CCCAGGTACAACAAGAGAGCG 60.673 57.143 0.00 0.0 0.00 5.03 R
2357 2559 3.923461 GTGAGAACATCTCCAAGAACTCG 59.077 47.826 5.00 0.0 42.73 4.18 R
3082 3294 2.293122 ACGCAATTTTCACAGCTTAGCA 59.707 40.909 7.07 0.0 0.00 3.49 R
3314 3528 2.032799 TGAAAGCGGTGTTGAACATGAC 59.967 45.455 0.00 0.0 0.00 3.06 R
3650 3865 2.194597 GGGGTGTGTCCAGTGCAA 59.805 61.111 0.00 0.0 38.11 4.08 R
4601 4816 1.167943 TATAGGAGGAGGGGGAGGTG 58.832 60.000 0.00 0.0 0.00 4.00 R
5357 5868 0.248289 CGGTGGTCGGGTTACTGATT 59.752 55.000 0.00 0.0 33.82 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.429141 CAGCAGTTGGAGCGGCAG 61.429 66.667 1.45 0.00 37.01 4.85
45 46 2.659731 GCAGCTAGCAACGATCAATC 57.340 50.000 18.83 0.00 44.79 2.67
58 59 3.940657 GATCAATCGAAGTGCTGGAAG 57.059 47.619 0.00 0.00 0.00 3.46
59 60 2.839486 TCAATCGAAGTGCTGGAAGT 57.161 45.000 0.00 0.00 35.30 3.01
60 61 2.688507 TCAATCGAAGTGCTGGAAGTC 58.311 47.619 0.00 0.00 35.30 3.01
61 62 1.391485 CAATCGAAGTGCTGGAAGTCG 59.609 52.381 0.00 0.00 35.30 4.18
62 63 0.888619 ATCGAAGTGCTGGAAGTCGA 59.111 50.000 7.66 7.66 41.06 4.20
63 64 0.671796 TCGAAGTGCTGGAAGTCGAA 59.328 50.000 3.52 0.00 35.27 3.71
64 65 0.784778 CGAAGTGCTGGAAGTCGAAC 59.215 55.000 0.00 0.00 31.27 3.95
65 66 1.865865 GAAGTGCTGGAAGTCGAACA 58.134 50.000 0.00 0.00 35.30 3.18
66 67 2.417719 GAAGTGCTGGAAGTCGAACAT 58.582 47.619 0.00 0.00 35.30 2.71
67 68 1.800805 AGTGCTGGAAGTCGAACATG 58.199 50.000 0.00 0.00 35.30 3.21
68 69 1.344438 AGTGCTGGAAGTCGAACATGA 59.656 47.619 0.00 0.00 35.30 3.07
69 70 2.027745 AGTGCTGGAAGTCGAACATGAT 60.028 45.455 0.00 0.00 35.30 2.45
70 71 2.094894 GTGCTGGAAGTCGAACATGATG 59.905 50.000 0.00 0.00 35.30 3.07
71 72 2.028203 TGCTGGAAGTCGAACATGATGA 60.028 45.455 0.00 0.00 35.30 2.92
72 73 2.349886 GCTGGAAGTCGAACATGATGAC 59.650 50.000 0.00 4.13 35.30 3.06
73 74 3.588955 CTGGAAGTCGAACATGATGACA 58.411 45.455 0.00 0.00 35.09 3.58
74 75 3.996363 CTGGAAGTCGAACATGATGACAA 59.004 43.478 0.00 0.00 35.09 3.18
75 76 4.578871 TGGAAGTCGAACATGATGACAAT 58.421 39.130 0.00 0.00 35.09 2.71
76 77 4.392754 TGGAAGTCGAACATGATGACAATG 59.607 41.667 0.00 0.00 35.09 2.82
77 78 4.201851 GGAAGTCGAACATGATGACAATGG 60.202 45.833 0.00 0.00 35.09 3.16
78 79 4.206477 AGTCGAACATGATGACAATGGA 57.794 40.909 0.00 0.00 35.09 3.41
79 80 3.935203 AGTCGAACATGATGACAATGGAC 59.065 43.478 0.00 0.05 35.09 4.02
80 81 3.684305 GTCGAACATGATGACAATGGACA 59.316 43.478 0.00 0.00 32.91 4.02
81 82 4.154015 GTCGAACATGATGACAATGGACAA 59.846 41.667 0.00 0.00 32.91 3.18
82 83 4.154015 TCGAACATGATGACAATGGACAAC 59.846 41.667 0.00 0.00 0.00 3.32
83 84 4.406069 GAACATGATGACAATGGACAACG 58.594 43.478 0.00 0.00 0.00 4.10
84 85 2.162208 ACATGATGACAATGGACAACGC 59.838 45.455 0.00 0.00 0.00 4.84
85 86 0.795698 TGATGACAATGGACAACGCG 59.204 50.000 3.53 3.53 0.00 6.01
86 87 0.796312 GATGACAATGGACAACGCGT 59.204 50.000 5.58 5.58 0.00 6.01
87 88 0.796312 ATGACAATGGACAACGCGTC 59.204 50.000 14.44 0.00 44.57 5.19
88 89 1.129809 GACAATGGACAACGCGTCG 59.870 57.895 14.44 2.72 46.42 5.12
89 90 2.222953 GACAATGGACAACGCGTCGG 62.223 60.000 14.44 11.19 46.42 4.79
90 91 3.419759 AATGGACAACGCGTCGGC 61.420 61.111 14.44 1.65 46.42 5.54
91 92 3.876589 AATGGACAACGCGTCGGCT 62.877 57.895 14.44 0.00 46.42 5.52
92 93 2.495366 AATGGACAACGCGTCGGCTA 62.495 55.000 14.44 0.00 46.42 3.93
93 94 2.879462 GGACAACGCGTCGGCTAG 60.879 66.667 14.44 0.93 46.42 3.42
94 95 2.177531 GACAACGCGTCGGCTAGA 59.822 61.111 14.44 0.00 34.19 2.43
95 96 1.868251 GACAACGCGTCGGCTAGAG 60.868 63.158 14.44 0.00 34.19 2.43
96 97 2.579787 CAACGCGTCGGCTAGAGG 60.580 66.667 14.44 0.00 36.88 3.69
97 98 2.749044 AACGCGTCGGCTAGAGGA 60.749 61.111 14.44 0.00 36.91 3.71
98 99 2.762234 AACGCGTCGGCTAGAGGAG 61.762 63.158 14.44 5.84 39.79 3.69
99 100 3.955101 CGCGTCGGCTAGAGGAGG 61.955 72.222 0.00 0.00 36.91 4.30
105 106 2.915137 GGCTAGAGGAGGCCGGAG 60.915 72.222 5.05 0.00 45.09 4.63
106 107 3.611674 GCTAGAGGAGGCCGGAGC 61.612 72.222 5.05 0.00 38.76 4.70
118 119 4.020617 CGGAGCCTGTTGCCCTGA 62.021 66.667 0.00 0.00 42.71 3.86
119 120 2.436109 GGAGCCTGTTGCCCTGAA 59.564 61.111 0.00 0.00 42.71 3.02
120 121 1.676967 GGAGCCTGTTGCCCTGAAG 60.677 63.158 0.00 0.00 42.71 3.02
121 122 1.073897 GAGCCTGTTGCCCTGAAGT 59.926 57.895 0.00 0.00 42.71 3.01
122 123 0.324943 GAGCCTGTTGCCCTGAAGTA 59.675 55.000 0.00 0.00 42.71 2.24
123 124 0.771127 AGCCTGTTGCCCTGAAGTAA 59.229 50.000 0.00 0.00 42.71 2.24
124 125 0.881796 GCCTGTTGCCCTGAAGTAAC 59.118 55.000 0.00 0.00 33.47 2.50
125 126 1.545651 GCCTGTTGCCCTGAAGTAACT 60.546 52.381 0.00 0.00 33.95 2.24
126 127 2.154462 CCTGTTGCCCTGAAGTAACTG 58.846 52.381 0.00 0.00 33.95 3.16
127 128 2.224523 CCTGTTGCCCTGAAGTAACTGA 60.225 50.000 0.00 0.00 34.67 3.41
128 129 3.476552 CTGTTGCCCTGAAGTAACTGAA 58.523 45.455 0.00 0.00 34.67 3.02
129 130 3.476552 TGTTGCCCTGAAGTAACTGAAG 58.523 45.455 0.00 0.00 33.95 3.02
130 131 3.118038 TGTTGCCCTGAAGTAACTGAAGT 60.118 43.478 0.00 0.00 33.95 3.01
131 132 3.126001 TGCCCTGAAGTAACTGAAGTG 57.874 47.619 0.00 0.00 0.00 3.16
132 133 1.807142 GCCCTGAAGTAACTGAAGTGC 59.193 52.381 0.00 0.00 0.00 4.40
133 134 2.551071 GCCCTGAAGTAACTGAAGTGCT 60.551 50.000 0.00 0.00 0.00 4.40
134 135 3.330267 CCCTGAAGTAACTGAAGTGCTC 58.670 50.000 0.00 0.00 0.00 4.26
135 136 3.007398 CCCTGAAGTAACTGAAGTGCTCT 59.993 47.826 0.00 0.00 0.00 4.09
136 137 4.503991 CCCTGAAGTAACTGAAGTGCTCTT 60.504 45.833 0.00 0.00 36.51 2.85
137 138 5.279506 CCCTGAAGTAACTGAAGTGCTCTTA 60.280 44.000 0.04 0.00 33.64 2.10
138 139 6.223852 CCTGAAGTAACTGAAGTGCTCTTAA 58.776 40.000 0.04 0.00 33.64 1.85
139 140 6.876257 CCTGAAGTAACTGAAGTGCTCTTAAT 59.124 38.462 0.04 0.00 33.64 1.40
140 141 7.389053 CCTGAAGTAACTGAAGTGCTCTTAATT 59.611 37.037 0.04 0.00 33.64 1.40
141 142 8.677148 TGAAGTAACTGAAGTGCTCTTAATTT 57.323 30.769 0.04 0.00 33.64 1.82
142 143 8.559536 TGAAGTAACTGAAGTGCTCTTAATTTG 58.440 33.333 0.04 0.00 33.64 2.32
143 144 8.677148 AAGTAACTGAAGTGCTCTTAATTTGA 57.323 30.769 0.04 0.00 33.64 2.69
144 145 8.316640 AGTAACTGAAGTGCTCTTAATTTGAG 57.683 34.615 0.04 4.40 33.64 3.02
153 154 3.614092 CTCTTAATTTGAGCTCCCTGCA 58.386 45.455 12.15 0.00 45.94 4.41
154 155 4.012374 CTCTTAATTTGAGCTCCCTGCAA 58.988 43.478 12.15 0.00 45.94 4.08
155 156 4.406456 TCTTAATTTGAGCTCCCTGCAAA 58.594 39.130 12.15 5.59 45.94 3.68
156 157 4.832266 TCTTAATTTGAGCTCCCTGCAAAA 59.168 37.500 12.15 4.11 45.94 2.44
157 158 5.481473 TCTTAATTTGAGCTCCCTGCAAAAT 59.519 36.000 12.15 6.45 45.94 1.82
158 159 3.604875 ATTTGAGCTCCCTGCAAAATG 57.395 42.857 12.15 0.00 45.94 2.32
159 160 1.999648 TTGAGCTCCCTGCAAAATGT 58.000 45.000 12.15 0.00 45.94 2.71
160 161 1.250328 TGAGCTCCCTGCAAAATGTG 58.750 50.000 12.15 0.00 45.94 3.21
161 162 0.529378 GAGCTCCCTGCAAAATGTGG 59.471 55.000 0.87 0.00 45.94 4.17
162 163 0.901580 AGCTCCCTGCAAAATGTGGG 60.902 55.000 0.00 0.00 45.94 4.61
163 164 1.891722 GCTCCCTGCAAAATGTGGGG 61.892 60.000 6.61 2.67 42.31 4.96
164 165 1.891722 CTCCCTGCAAAATGTGGGGC 61.892 60.000 6.61 0.00 40.05 5.80
165 166 2.664398 CCTGCAAAATGTGGGGCC 59.336 61.111 0.00 0.00 0.00 5.80
166 167 2.664398 CTGCAAAATGTGGGGCCC 59.336 61.111 18.17 18.17 0.00 5.80
167 168 1.914764 CTGCAAAATGTGGGGCCCT 60.915 57.895 25.93 0.00 0.00 5.19
168 169 2.175035 CTGCAAAATGTGGGGCCCTG 62.175 60.000 25.93 13.75 0.00 4.45
169 170 2.216331 GCAAAATGTGGGGCCCTGT 61.216 57.895 25.93 6.61 0.00 4.00
170 171 1.672898 CAAAATGTGGGGCCCTGTG 59.327 57.895 25.93 4.47 0.00 3.66
171 172 2.216331 AAAATGTGGGGCCCTGTGC 61.216 57.895 25.93 11.82 40.16 4.57
188 189 3.542676 CGGCCGCACACCCCTATA 61.543 66.667 14.67 0.00 0.00 1.31
189 190 2.426023 GGCCGCACACCCCTATAG 59.574 66.667 0.00 0.00 0.00 1.31
190 191 2.426023 GCCGCACACCCCTATAGG 59.574 66.667 12.27 12.27 0.00 2.57
191 192 2.426023 CCGCACACCCCTATAGGC 59.574 66.667 13.85 0.00 0.00 3.93
192 193 2.439960 CCGCACACCCCTATAGGCA 61.440 63.158 13.85 0.00 0.00 4.75
193 194 1.227556 CGCACACCCCTATAGGCAC 60.228 63.158 13.85 0.00 0.00 5.01
194 195 1.227556 GCACACCCCTATAGGCACG 60.228 63.158 13.85 5.70 0.00 5.34
195 196 1.445942 CACACCCCTATAGGCACGG 59.554 63.158 13.85 11.78 0.00 4.94
196 197 2.426023 CACCCCTATAGGCACGGC 59.574 66.667 13.85 0.00 0.00 5.68
206 207 3.216292 GGCACGGCCTTGTGTTGT 61.216 61.111 11.38 0.00 46.69 3.32
207 208 1.894756 GGCACGGCCTTGTGTTGTA 60.895 57.895 11.38 0.00 46.69 2.41
208 209 1.281656 GCACGGCCTTGTGTTGTAC 59.718 57.895 11.38 0.00 41.94 2.90
209 210 1.440938 GCACGGCCTTGTGTTGTACA 61.441 55.000 11.38 0.00 41.94 2.90
210 211 1.018148 CACGGCCTTGTGTTGTACAA 58.982 50.000 3.59 3.59 46.62 2.41
211 212 1.018910 ACGGCCTTGTGTTGTACAAC 58.981 50.000 28.13 28.13 44.07 3.32
212 213 0.309612 CGGCCTTGTGTTGTACAACC 59.690 55.000 30.68 22.74 44.07 3.77
213 214 0.671796 GGCCTTGTGTTGTACAACCC 59.328 55.000 30.68 22.61 44.07 4.11
214 215 0.671796 GCCTTGTGTTGTACAACCCC 59.328 55.000 30.68 22.39 44.07 4.95
215 216 1.752788 GCCTTGTGTTGTACAACCCCT 60.753 52.381 30.68 0.00 44.07 4.79
216 217 2.487625 GCCTTGTGTTGTACAACCCCTA 60.488 50.000 30.68 18.55 44.07 3.53
217 218 3.812882 GCCTTGTGTTGTACAACCCCTAT 60.813 47.826 30.68 0.00 44.07 2.57
218 219 4.007659 CCTTGTGTTGTACAACCCCTATC 58.992 47.826 30.68 16.27 44.07 2.08
219 220 3.706600 TGTGTTGTACAACCCCTATCC 57.293 47.619 30.68 13.19 40.46 2.59
220 221 2.306512 TGTGTTGTACAACCCCTATCCC 59.693 50.000 30.68 8.01 40.46 3.85
221 222 2.306512 GTGTTGTACAACCCCTATCCCA 59.693 50.000 30.68 10.42 40.46 4.37
222 223 3.053917 GTGTTGTACAACCCCTATCCCAT 60.054 47.826 30.68 0.00 40.46 4.00
223 224 3.053991 TGTTGTACAACCCCTATCCCATG 60.054 47.826 30.68 0.00 40.46 3.66
224 225 2.853430 TGTACAACCCCTATCCCATGT 58.147 47.619 0.00 0.00 0.00 3.21
225 226 3.194620 TGTACAACCCCTATCCCATGTT 58.805 45.455 0.00 0.00 0.00 2.71
226 227 3.594232 TGTACAACCCCTATCCCATGTTT 59.406 43.478 0.00 0.00 0.00 2.83
227 228 3.845109 ACAACCCCTATCCCATGTTTT 57.155 42.857 0.00 0.00 0.00 2.43
228 229 3.708451 ACAACCCCTATCCCATGTTTTC 58.292 45.455 0.00 0.00 0.00 2.29
229 230 3.031013 CAACCCCTATCCCATGTTTTCC 58.969 50.000 0.00 0.00 0.00 3.13
230 231 2.584773 ACCCCTATCCCATGTTTTCCT 58.415 47.619 0.00 0.00 0.00 3.36
231 232 2.933139 ACCCCTATCCCATGTTTTCCTT 59.067 45.455 0.00 0.00 0.00 3.36
232 233 3.339742 ACCCCTATCCCATGTTTTCCTTT 59.660 43.478 0.00 0.00 0.00 3.11
233 234 3.706086 CCCCTATCCCATGTTTTCCTTTG 59.294 47.826 0.00 0.00 0.00 2.77
234 235 3.132824 CCCTATCCCATGTTTTCCTTTGC 59.867 47.826 0.00 0.00 0.00 3.68
235 236 3.181487 CCTATCCCATGTTTTCCTTTGCG 60.181 47.826 0.00 0.00 0.00 4.85
236 237 0.965439 TCCCATGTTTTCCTTTGCGG 59.035 50.000 0.00 0.00 0.00 5.69
237 238 0.037419 CCCATGTTTTCCTTTGCGGG 60.037 55.000 0.00 0.00 0.00 6.13
238 239 0.037419 CCATGTTTTCCTTTGCGGGG 60.037 55.000 0.00 0.00 0.00 5.73
239 240 0.670239 CATGTTTTCCTTTGCGGGGC 60.670 55.000 0.00 0.00 0.00 5.80
240 241 2.049526 GTTTTCCTTTGCGGGGCG 60.050 61.111 0.00 0.00 0.00 6.13
241 242 3.299190 TTTTCCTTTGCGGGGCGG 61.299 61.111 0.00 0.00 0.00 6.13
242 243 4.589675 TTTCCTTTGCGGGGCGGT 62.590 61.111 0.00 0.00 0.00 5.68
246 247 3.508840 CTTTGCGGGGCGGTGATC 61.509 66.667 0.00 0.00 0.00 2.92
247 248 3.976701 CTTTGCGGGGCGGTGATCT 62.977 63.158 0.00 0.00 0.00 2.75
248 249 3.969250 TTTGCGGGGCGGTGATCTC 62.969 63.158 0.00 0.00 0.00 2.75
250 251 4.899239 GCGGGGCGGTGATCTCAG 62.899 72.222 0.00 0.00 0.00 3.35
251 252 3.147595 CGGGGCGGTGATCTCAGA 61.148 66.667 0.00 0.00 0.00 3.27
252 253 2.501610 GGGGCGGTGATCTCAGAC 59.498 66.667 0.00 0.00 0.00 3.51
253 254 2.501610 GGGCGGTGATCTCAGACC 59.498 66.667 3.97 3.97 0.00 3.85
257 258 4.504132 GGTGATCTCAGACCGTGC 57.496 61.111 0.00 0.00 0.00 5.34
258 259 1.591703 GGTGATCTCAGACCGTGCA 59.408 57.895 0.00 0.00 0.00 4.57
259 260 0.176680 GGTGATCTCAGACCGTGCAT 59.823 55.000 0.00 0.00 0.00 3.96
260 261 1.284657 GTGATCTCAGACCGTGCATG 58.715 55.000 0.00 0.00 0.00 4.06
261 262 0.897621 TGATCTCAGACCGTGCATGT 59.102 50.000 4.96 0.00 0.00 3.21
262 263 1.134995 TGATCTCAGACCGTGCATGTC 60.135 52.381 4.96 8.14 0.00 3.06
263 264 0.897621 ATCTCAGACCGTGCATGTCA 59.102 50.000 18.14 1.99 35.15 3.58
264 265 0.244721 TCTCAGACCGTGCATGTCAG 59.755 55.000 18.14 12.04 35.15 3.51
265 266 0.037882 CTCAGACCGTGCATGTCAGT 60.038 55.000 18.14 4.33 35.15 3.41
266 267 0.319813 TCAGACCGTGCATGTCAGTG 60.320 55.000 18.14 10.61 35.15 3.66
267 268 0.601046 CAGACCGTGCATGTCAGTGT 60.601 55.000 18.14 3.65 35.15 3.55
268 269 0.319900 AGACCGTGCATGTCAGTGTC 60.320 55.000 18.14 11.68 35.15 3.67
269 270 0.319900 GACCGTGCATGTCAGTGTCT 60.320 55.000 12.85 0.00 32.91 3.41
270 271 0.106708 ACCGTGCATGTCAGTGTCTT 59.893 50.000 4.96 0.00 0.00 3.01
392 393 4.269523 GCACCTGTCAGTGGCCCA 62.270 66.667 0.00 0.00 38.24 5.36
393 394 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
394 395 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
395 396 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
397 398 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
398 399 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
413 414 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
414 415 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
415 416 2.970639 GCCCTGCAGTACGTCAGA 59.029 61.111 13.81 0.00 32.26 3.27
416 417 1.153745 GCCCTGCAGTACGTCAGAG 60.154 63.158 13.81 6.74 32.26 3.35
417 418 1.513158 CCCTGCAGTACGTCAGAGG 59.487 63.158 13.81 12.06 32.26 3.69
418 419 0.965866 CCCTGCAGTACGTCAGAGGA 60.966 60.000 13.81 0.00 32.26 3.71
419 420 0.453793 CCTGCAGTACGTCAGAGGAG 59.546 60.000 13.81 0.00 32.26 3.69
420 421 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70
421 422 1.139947 GCAGTACGTCAGAGGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
422 423 1.316706 GCAGTACGTCAGAGGAGCCT 61.317 60.000 0.00 0.00 0.00 4.58
423 424 0.736053 CAGTACGTCAGAGGAGCCTC 59.264 60.000 8.50 8.50 43.03 4.70
424 425 0.745128 AGTACGTCAGAGGAGCCTCG 60.745 60.000 10.69 6.49 46.90 4.63
425 426 1.025647 GTACGTCAGAGGAGCCTCGT 61.026 60.000 10.69 8.30 46.90 4.18
426 427 0.743701 TACGTCAGAGGAGCCTCGTC 60.744 60.000 10.69 6.30 46.90 4.20
427 428 2.041115 CGTCAGAGGAGCCTCGTCA 61.041 63.158 16.09 0.00 46.90 4.35
438 439 1.343789 AGCCTCGTCATCCTCATCATG 59.656 52.381 0.00 0.00 0.00 3.07
443 444 1.607509 CGTCATCCTCATCATGCCCTC 60.608 57.143 0.00 0.00 0.00 4.30
445 446 1.697982 TCATCCTCATCATGCCCTCTG 59.302 52.381 0.00 0.00 0.00 3.35
446 447 1.420514 CATCCTCATCATGCCCTCTGT 59.579 52.381 0.00 0.00 0.00 3.41
451 454 3.629398 CCTCATCATGCCCTCTGTTTTAC 59.371 47.826 0.00 0.00 0.00 2.01
453 456 3.266772 TCATCATGCCCTCTGTTTTACCT 59.733 43.478 0.00 0.00 0.00 3.08
458 461 1.628846 GCCCTCTGTTTTACCTCCTGA 59.371 52.381 0.00 0.00 0.00 3.86
471 474 9.639601 GTTTTACCTCCTGATTTTTAAATCCTG 57.360 33.333 11.54 5.82 43.19 3.86
472 475 8.950007 TTTACCTCCTGATTTTTAAATCCTGT 57.050 30.769 11.54 5.55 43.19 4.00
488 491 1.197721 CCTGTTGTCACCGCTTTGATC 59.802 52.381 0.00 0.00 0.00 2.92
490 493 3.325870 CTGTTGTCACCGCTTTGATCTA 58.674 45.455 0.00 0.00 0.00 1.98
515 518 2.433604 TGCAAATCAGAGCACCCAAAAA 59.566 40.909 0.00 0.00 35.51 1.94
534 537 5.612725 AAAAAGATTGGCCAGAAACAGAA 57.387 34.783 5.11 0.00 0.00 3.02
577 580 5.835113 AACTATTGTGTGTGAAAGCAACT 57.165 34.783 0.00 0.00 0.00 3.16
579 582 4.881273 ACTATTGTGTGTGAAAGCAACTGA 59.119 37.500 0.00 0.00 0.00 3.41
581 584 1.396648 TGTGTGTGAAAGCAACTGACG 59.603 47.619 0.00 0.00 0.00 4.35
583 586 0.317020 GTGTGAAAGCAACTGACGGC 60.317 55.000 0.00 0.00 0.00 5.68
584 587 0.463654 TGTGAAAGCAACTGACGGCT 60.464 50.000 0.00 0.00 43.46 5.52
585 588 0.235926 GTGAAAGCAACTGACGGCTC 59.764 55.000 0.00 0.00 40.01 4.70
586 589 0.884704 TGAAAGCAACTGACGGCTCC 60.885 55.000 0.00 0.00 40.01 4.70
587 590 0.603975 GAAAGCAACTGACGGCTCCT 60.604 55.000 0.00 0.00 40.01 3.69
588 591 0.603975 AAAGCAACTGACGGCTCCTC 60.604 55.000 0.00 0.00 40.01 3.71
589 592 2.435059 GCAACTGACGGCTCCTCC 60.435 66.667 0.00 0.00 0.00 4.30
590 593 2.948720 GCAACTGACGGCTCCTCCT 61.949 63.158 0.00 0.00 0.00 3.69
591 594 1.216710 CAACTGACGGCTCCTCCTC 59.783 63.158 0.00 0.00 0.00 3.71
592 595 2.344203 AACTGACGGCTCCTCCTCG 61.344 63.158 0.00 0.00 0.00 4.63
593 596 2.438614 CTGACGGCTCCTCCTCGA 60.439 66.667 0.00 0.00 0.00 4.04
594 597 2.750637 TGACGGCTCCTCCTCGAC 60.751 66.667 0.00 0.00 0.00 4.20
595 598 3.519930 GACGGCTCCTCCTCGACC 61.520 72.222 0.00 0.00 0.00 4.79
596 599 3.999297 GACGGCTCCTCCTCGACCT 62.999 68.421 0.00 0.00 0.00 3.85
597 600 3.213402 CGGCTCCTCCTCGACCTC 61.213 72.222 0.00 0.00 0.00 3.85
598 601 2.835895 GGCTCCTCCTCGACCTCC 60.836 72.222 0.00 0.00 0.00 4.30
599 602 2.043852 GCTCCTCCTCGACCTCCA 60.044 66.667 0.00 0.00 0.00 3.86
616 619 1.631388 TCCACCATGGTAAACCGACAT 59.369 47.619 19.28 0.00 39.03 3.06
639 642 3.760537 GTGTTCTTAACGCAACAACCAA 58.239 40.909 0.00 0.00 41.43 3.67
640 643 3.789224 GTGTTCTTAACGCAACAACCAAG 59.211 43.478 0.00 0.00 41.43 3.61
642 645 1.335496 TCTTAACGCAACAACCAAGGC 59.665 47.619 0.00 0.00 0.00 4.35
643 646 1.066303 CTTAACGCAACAACCAAGGCA 59.934 47.619 0.00 0.00 0.00 4.75
667 670 1.140252 ACAGTCAGCGGTTTACCTTGT 59.860 47.619 0.00 0.00 0.00 3.16
707 710 8.472683 TTTACCAGTTCTGATTTTGTTTGTTG 57.527 30.769 1.00 0.00 0.00 3.33
708 711 4.869861 ACCAGTTCTGATTTTGTTTGTTGC 59.130 37.500 1.00 0.00 0.00 4.17
709 712 4.270808 CCAGTTCTGATTTTGTTTGTTGCC 59.729 41.667 1.00 0.00 0.00 4.52
711 714 6.272318 CAGTTCTGATTTTGTTTGTTGCCTA 58.728 36.000 0.00 0.00 0.00 3.93
712 715 6.418819 CAGTTCTGATTTTGTTTGTTGCCTAG 59.581 38.462 0.00 0.00 0.00 3.02
713 716 6.096846 AGTTCTGATTTTGTTTGTTGCCTAGT 59.903 34.615 0.00 0.00 0.00 2.57
714 717 7.284489 AGTTCTGATTTTGTTTGTTGCCTAGTA 59.716 33.333 0.00 0.00 0.00 1.82
715 718 6.966021 TCTGATTTTGTTTGTTGCCTAGTAC 58.034 36.000 0.00 0.00 0.00 2.73
716 719 6.770785 TCTGATTTTGTTTGTTGCCTAGTACT 59.229 34.615 0.00 0.00 0.00 2.73
717 720 6.734137 TGATTTTGTTTGTTGCCTAGTACTG 58.266 36.000 5.39 0.00 0.00 2.74
718 721 5.508200 TTTTGTTTGTTGCCTAGTACTGG 57.492 39.130 5.39 1.52 0.00 4.00
723 757 4.425180 TTGTTGCCTAGTACTGGTTCAA 57.575 40.909 5.39 6.37 0.00 2.69
728 762 6.653320 TGTTGCCTAGTACTGGTTCAATAAAG 59.347 38.462 5.39 0.00 0.00 1.85
732 766 6.351966 GCCTAGTACTGGTTCAATAAAGGACT 60.352 42.308 5.39 0.00 37.57 3.85
738 772 4.579869 TGGTTCAATAAAGGACTGCTCTC 58.420 43.478 0.00 0.00 0.00 3.20
799 833 6.073819 GCATGAAGTTGACCCAACAAATAAAC 60.074 38.462 11.73 0.00 45.66 2.01
1002 1174 3.246619 GCGCCGGAAAACAATTAATCAA 58.753 40.909 5.05 0.00 0.00 2.57
1015 1195 9.469807 AAACAATTAATCAATTAGTCAAACGCA 57.530 25.926 0.00 0.00 32.96 5.24
1059 1242 2.015726 TCCCTCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
1163 1347 2.586357 GTCGAGCAATCCGGAGCC 60.586 66.667 11.34 0.00 0.00 4.70
1292 1476 3.168528 GGCTCCAGGGGCGGATAA 61.169 66.667 4.81 0.00 33.56 1.75
1296 1481 1.968050 CTCCAGGGGCGGATAACGTT 61.968 60.000 5.88 5.88 46.52 3.99
1301 1486 1.227468 GGGCGGATAACGTTCCCTC 60.227 63.158 2.82 2.37 46.52 4.30
1303 1488 0.249363 GGCGGATAACGTTCCCTCTC 60.249 60.000 2.82 0.17 46.52 3.20
1304 1489 0.594284 GCGGATAACGTTCCCTCTCG 60.594 60.000 2.82 7.77 46.52 4.04
1310 1495 4.493747 CGTTCCCTCTCGGCGTCC 62.494 72.222 6.85 0.00 0.00 4.79
1488 1674 1.690219 GGGTGCTCCTCATCACGGAT 61.690 60.000 4.53 0.00 34.20 4.18
1594 1781 5.365403 TTTACTCGCATTTTTACACCCTG 57.635 39.130 0.00 0.00 0.00 4.45
1614 1801 4.153655 CCTGGCCGTTTTAGTAGAAGAAAC 59.846 45.833 0.00 0.00 0.00 2.78
1615 1802 4.706035 TGGCCGTTTTAGTAGAAGAAACA 58.294 39.130 0.00 0.00 33.93 2.83
1616 1803 4.753107 TGGCCGTTTTAGTAGAAGAAACAG 59.247 41.667 0.00 0.00 33.93 3.16
1617 1804 4.153655 GGCCGTTTTAGTAGAAGAAACAGG 59.846 45.833 0.00 0.00 33.93 4.00
1618 1805 4.753610 GCCGTTTTAGTAGAAGAAACAGGT 59.246 41.667 0.00 0.00 33.93 4.00
1619 1806 5.237996 GCCGTTTTAGTAGAAGAAACAGGTT 59.762 40.000 0.00 0.00 33.93 3.50
1620 1807 6.238566 GCCGTTTTAGTAGAAGAAACAGGTTT 60.239 38.462 0.00 0.00 33.93 3.27
1621 1808 7.130269 CCGTTTTAGTAGAAGAAACAGGTTTG 58.870 38.462 1.52 0.00 33.93 2.93
1622 1809 7.011669 CCGTTTTAGTAGAAGAAACAGGTTTGA 59.988 37.037 1.52 0.00 33.93 2.69
1651 1838 2.624838 AGTTTGGTTGATCTGTTGCTGG 59.375 45.455 0.00 0.00 0.00 4.85
1677 1871 4.504461 CCAAGTAGTATAAGCAACTGAGCG 59.496 45.833 0.00 0.00 40.15 5.03
1683 1877 5.721232 AGTATAAGCAACTGAGCGTAGTTT 58.279 37.500 5.99 0.00 38.78 2.66
1689 1883 4.755123 AGCAACTGAGCGTAGTTTAAATGT 59.245 37.500 5.99 0.00 38.78 2.71
1741 1935 9.620259 CTAGCTGGTTTAGAGAAGGAATTTAAT 57.380 33.333 0.00 0.00 0.00 1.40
1743 1937 8.109634 AGCTGGTTTAGAGAAGGAATTTAATCA 58.890 33.333 0.00 0.00 0.00 2.57
1765 1959 5.013079 TCAGAGAGTTTCCTCCATTTTAGCA 59.987 40.000 0.00 0.00 38.58 3.49
1768 1962 7.011857 CAGAGAGTTTCCTCCATTTTAGCATAC 59.988 40.741 0.00 0.00 38.58 2.39
1771 1965 9.685979 AGAGTTTCCTCCATTTTAGCATACGCT 62.686 40.741 0.00 0.00 44.67 5.07
1803 2003 5.505792 GCTTATCAGTTACCGCGTTTTAAAC 59.494 40.000 4.92 0.00 0.00 2.01
1804 2004 3.876242 TCAGTTACCGCGTTTTAAACC 57.124 42.857 4.92 0.00 0.00 3.27
1813 2013 3.057806 CCGCGTTTTAAACCAGGAAATCT 60.058 43.478 4.92 0.00 0.00 2.40
1814 2014 3.911964 CGCGTTTTAAACCAGGAAATCTG 59.088 43.478 0.00 0.00 43.00 2.90
1815 2015 4.319911 CGCGTTTTAAACCAGGAAATCTGA 60.320 41.667 0.00 0.00 46.18 3.27
1823 2024 8.662781 TTAAACCAGGAAATCTGATAGATTCG 57.337 34.615 4.68 0.00 43.67 3.34
1825 2026 6.978674 ACCAGGAAATCTGATAGATTCGTA 57.021 37.500 4.68 0.00 43.67 3.43
1833 2034 5.048153 TCTGATAGATTCGTATCGCCTTG 57.952 43.478 0.00 0.00 35.85 3.61
1846 2047 2.298593 GCCTTGCGAACGATACCTC 58.701 57.895 0.00 0.00 0.00 3.85
1847 2048 0.459585 GCCTTGCGAACGATACCTCA 60.460 55.000 0.00 0.00 0.00 3.86
1851 2052 2.273370 TGCGAACGATACCTCACTTC 57.727 50.000 0.00 0.00 0.00 3.01
1965 2167 5.917462 TCGATCATTGCTTCTCCTTGAATA 58.083 37.500 0.00 0.00 33.71 1.75
2184 2386 0.734889 CGAAATGGTCCACTGCATCC 59.265 55.000 0.00 0.00 0.00 3.51
2222 2424 2.583520 CTCTCTCTGGGCCAGCAC 59.416 66.667 29.02 0.00 0.00 4.40
2303 2505 1.946283 GCTCTCTTGTTGTACCTGGGC 60.946 57.143 0.00 0.00 0.00 5.36
2357 2559 6.690194 ATGCTCTACAAACAATCATCTTCC 57.310 37.500 0.00 0.00 0.00 3.46
2816 3018 8.798402 GCTCCGCTACCTCATATAGATATATTT 58.202 37.037 0.00 0.00 0.00 1.40
2924 3133 4.096984 AGACTTCAACTGTGCCTTTTTCAG 59.903 41.667 0.00 0.00 35.60 3.02
3082 3294 5.570320 TCAATAGCTTTTTAGGACCTTGCT 58.430 37.500 0.00 5.20 0.00 3.91
3314 3528 0.603569 CGAGGAGATGGTATTCCGGG 59.396 60.000 0.00 0.00 38.54 5.73
3462 3677 8.779354 ATTAACTTGAGAACTAGCCTACTTTG 57.221 34.615 0.00 0.00 0.00 2.77
3650 3865 4.457094 TGGTTGGATGGGGATATGGATAT 58.543 43.478 0.00 0.00 0.00 1.63
4170 4385 7.438459 CCTTCACCTCTTATGGTAACTAAATCG 59.562 40.741 0.00 0.00 38.45 3.34
4252 4467 3.191371 CACTGTTTCATTAGCCCCTGTTC 59.809 47.826 0.00 0.00 0.00 3.18
4427 4642 3.876274 TCTCAAGTCACTGCCTGATAC 57.124 47.619 0.00 0.00 0.00 2.24
4459 4674 6.538444 GCTTCAGCTTCTTCAGTTTGTATAC 58.462 40.000 0.00 0.00 38.21 1.47
4499 4714 2.496899 AAAGCATCTTCACCGGTGAT 57.503 45.000 36.52 20.56 39.64 3.06
4520 4735 1.888512 GTTGCCTGCAATTCCTCTGAA 59.111 47.619 7.94 0.00 38.28 3.02
4565 4780 4.352009 ACTCCAGTCACAAGATCAGATCT 58.648 43.478 7.15 7.15 42.61 2.75
4599 4814 4.329545 CTCCCACCACCACCACCG 62.330 72.222 0.00 0.00 0.00 4.94
4715 4930 3.480679 CTCCACCAGCACTGCCACA 62.481 63.158 0.00 0.00 0.00 4.17
5357 5868 3.196463 CCAGCAATGCTTCACAAAAACA 58.804 40.909 4.36 0.00 36.40 2.83
5409 5920 1.847088 GGCCCACCTCCTAAGAATTCT 59.153 52.381 0.88 0.88 0.00 2.40
5454 5965 2.203337 GTTGTCAGTGCTGCCCCA 60.203 61.111 0.00 0.00 0.00 4.96
5590 6101 4.813296 CACTGGGTAAAAGTGTCAAGAC 57.187 45.455 0.00 0.00 40.17 3.01
5677 6188 7.763172 ATTTTGTTGCGACATTCTTTGTTAA 57.237 28.000 7.83 0.00 39.18 2.01
5722 6233 5.445939 GCACTTTGATATGTTAGTCCACACG 60.446 44.000 0.00 0.00 0.00 4.49
5741 6252 4.039488 ACACGTATGTTTAACAGGACTCCA 59.961 41.667 3.63 0.00 34.46 3.86
5794 6305 5.894298 TTCTCAGTATCCATGCCAAGTAT 57.106 39.130 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.429141 CTGCCGCTCCAACTGCTG 61.429 66.667 0.00 0.00 0.00 4.41
14 15 3.958147 TAGCTGCCGCTCCAACTGC 62.958 63.158 5.68 0.00 45.15 4.40
15 16 1.812922 CTAGCTGCCGCTCCAACTG 60.813 63.158 5.68 0.00 45.15 3.16
16 17 2.581354 CTAGCTGCCGCTCCAACT 59.419 61.111 5.68 0.00 45.15 3.16
17 18 3.198489 GCTAGCTGCCGCTCCAAC 61.198 66.667 5.68 0.00 45.15 3.77
18 19 3.252627 TTGCTAGCTGCCGCTCCAA 62.253 57.895 17.23 8.84 45.15 3.53
19 20 3.705289 TTGCTAGCTGCCGCTCCA 61.705 61.111 17.23 2.43 45.15 3.86
20 21 3.198489 GTTGCTAGCTGCCGCTCC 61.198 66.667 17.23 0.00 45.15 4.70
21 22 3.558411 CGTTGCTAGCTGCCGCTC 61.558 66.667 17.23 0.00 45.15 5.03
23 24 2.875786 GATCGTTGCTAGCTGCCGC 61.876 63.158 17.23 0.00 42.00 6.53
24 25 1.083806 TTGATCGTTGCTAGCTGCCG 61.084 55.000 17.23 14.64 42.00 5.69
25 26 1.262683 GATTGATCGTTGCTAGCTGCC 59.737 52.381 17.23 2.55 42.00 4.85
26 27 1.070975 CGATTGATCGTTGCTAGCTGC 60.071 52.381 17.23 7.62 44.74 5.25
27 28 2.918656 CGATTGATCGTTGCTAGCTG 57.081 50.000 17.23 6.07 44.74 4.24
38 39 3.265791 ACTTCCAGCACTTCGATTGATC 58.734 45.455 0.00 0.00 0.00 2.92
39 40 3.265791 GACTTCCAGCACTTCGATTGAT 58.734 45.455 0.00 0.00 0.00 2.57
40 41 2.688507 GACTTCCAGCACTTCGATTGA 58.311 47.619 0.00 0.00 0.00 2.57
41 42 1.391485 CGACTTCCAGCACTTCGATTG 59.609 52.381 0.00 0.00 0.00 2.67
42 43 1.272490 TCGACTTCCAGCACTTCGATT 59.728 47.619 0.00 0.00 33.95 3.34
43 44 0.888619 TCGACTTCCAGCACTTCGAT 59.111 50.000 0.00 0.00 33.95 3.59
44 45 0.671796 TTCGACTTCCAGCACTTCGA 59.328 50.000 0.00 0.00 36.95 3.71
45 46 0.784778 GTTCGACTTCCAGCACTTCG 59.215 55.000 0.00 0.00 0.00 3.79
46 47 1.865865 TGTTCGACTTCCAGCACTTC 58.134 50.000 0.00 0.00 0.00 3.01
47 48 2.146342 CATGTTCGACTTCCAGCACTT 58.854 47.619 0.00 0.00 0.00 3.16
48 49 1.344438 TCATGTTCGACTTCCAGCACT 59.656 47.619 0.00 0.00 0.00 4.40
49 50 1.795768 TCATGTTCGACTTCCAGCAC 58.204 50.000 0.00 0.00 0.00 4.40
50 51 2.028203 TCATCATGTTCGACTTCCAGCA 60.028 45.455 0.00 0.00 0.00 4.41
51 52 2.349886 GTCATCATGTTCGACTTCCAGC 59.650 50.000 0.00 0.00 0.00 4.85
52 53 3.588955 TGTCATCATGTTCGACTTCCAG 58.411 45.455 11.34 0.00 0.00 3.86
53 54 3.676291 TGTCATCATGTTCGACTTCCA 57.324 42.857 11.34 0.00 0.00 3.53
54 55 4.201851 CCATTGTCATCATGTTCGACTTCC 60.202 45.833 11.34 0.00 0.00 3.46
55 56 4.631377 TCCATTGTCATCATGTTCGACTTC 59.369 41.667 11.34 0.00 0.00 3.01
56 57 4.393062 GTCCATTGTCATCATGTTCGACTT 59.607 41.667 11.34 0.53 0.00 3.01
57 58 3.935203 GTCCATTGTCATCATGTTCGACT 59.065 43.478 11.34 0.00 0.00 4.18
58 59 3.684305 TGTCCATTGTCATCATGTTCGAC 59.316 43.478 0.00 0.00 0.00 4.20
59 60 3.936564 TGTCCATTGTCATCATGTTCGA 58.063 40.909 0.00 0.00 0.00 3.71
60 61 4.406069 GTTGTCCATTGTCATCATGTTCG 58.594 43.478 0.00 0.00 0.00 3.95
61 62 4.406069 CGTTGTCCATTGTCATCATGTTC 58.594 43.478 0.00 0.00 0.00 3.18
62 63 3.366273 GCGTTGTCCATTGTCATCATGTT 60.366 43.478 0.00 0.00 0.00 2.71
63 64 2.162208 GCGTTGTCCATTGTCATCATGT 59.838 45.455 0.00 0.00 0.00 3.21
64 65 2.788750 CGCGTTGTCCATTGTCATCATG 60.789 50.000 0.00 0.00 0.00 3.07
65 66 1.398041 CGCGTTGTCCATTGTCATCAT 59.602 47.619 0.00 0.00 0.00 2.45
66 67 0.795698 CGCGTTGTCCATTGTCATCA 59.204 50.000 0.00 0.00 0.00 3.07
67 68 0.796312 ACGCGTTGTCCATTGTCATC 59.204 50.000 5.58 0.00 0.00 2.92
68 69 0.796312 GACGCGTTGTCCATTGTCAT 59.204 50.000 15.53 0.00 42.04 3.06
69 70 1.553195 CGACGCGTTGTCCATTGTCA 61.553 55.000 15.53 0.00 45.23 3.58
70 71 1.129809 CGACGCGTTGTCCATTGTC 59.870 57.895 15.53 0.00 45.23 3.18
71 72 2.314647 CCGACGCGTTGTCCATTGT 61.315 57.895 24.28 0.00 45.23 2.71
72 73 2.474266 CCGACGCGTTGTCCATTG 59.526 61.111 24.28 4.80 45.23 2.82
73 74 2.495366 TAGCCGACGCGTTGTCCATT 62.495 55.000 24.28 7.97 45.23 3.16
74 75 2.884087 CTAGCCGACGCGTTGTCCAT 62.884 60.000 24.28 9.95 45.23 3.41
75 76 3.620300 CTAGCCGACGCGTTGTCCA 62.620 63.158 24.28 0.00 45.23 4.02
76 77 2.879462 CTAGCCGACGCGTTGTCC 60.879 66.667 24.28 14.82 45.23 4.02
77 78 1.868251 CTCTAGCCGACGCGTTGTC 60.868 63.158 24.28 12.97 44.53 3.18
78 79 2.178521 CTCTAGCCGACGCGTTGT 59.821 61.111 24.28 10.14 41.18 3.32
79 80 2.579787 CCTCTAGCCGACGCGTTG 60.580 66.667 19.89 19.89 41.18 4.10
80 81 2.749044 TCCTCTAGCCGACGCGTT 60.749 61.111 15.53 0.00 41.18 4.84
81 82 3.203412 CTCCTCTAGCCGACGCGT 61.203 66.667 13.85 13.85 41.18 6.01
82 83 3.955101 CCTCCTCTAGCCGACGCG 61.955 72.222 3.53 3.53 41.18 6.01
83 84 4.273257 GCCTCCTCTAGCCGACGC 62.273 72.222 0.00 0.00 0.00 5.19
84 85 3.597728 GGCCTCCTCTAGCCGACG 61.598 72.222 0.00 0.00 39.87 5.12
88 89 2.915137 CTCCGGCCTCCTCTAGCC 60.915 72.222 0.00 0.00 46.17 3.93
89 90 3.611674 GCTCCGGCCTCCTCTAGC 61.612 72.222 0.00 0.00 0.00 3.42
103 104 0.324943 TACTTCAGGGCAACAGGCTC 59.675 55.000 0.00 0.00 46.29 4.70
104 105 0.771127 TTACTTCAGGGCAACAGGCT 59.229 50.000 0.00 0.00 44.01 4.58
105 106 0.881796 GTTACTTCAGGGCAACAGGC 59.118 55.000 0.00 0.00 43.74 4.85
106 107 2.154462 CAGTTACTTCAGGGCAACAGG 58.846 52.381 0.00 0.00 39.74 4.00
107 108 3.126001 TCAGTTACTTCAGGGCAACAG 57.874 47.619 0.00 0.00 39.74 3.16
108 109 3.118038 ACTTCAGTTACTTCAGGGCAACA 60.118 43.478 0.00 0.00 39.74 3.33
109 110 3.251004 CACTTCAGTTACTTCAGGGCAAC 59.749 47.826 0.00 0.00 0.00 4.17
110 111 3.476552 CACTTCAGTTACTTCAGGGCAA 58.523 45.455 0.00 0.00 0.00 4.52
111 112 2.810400 GCACTTCAGTTACTTCAGGGCA 60.810 50.000 9.30 0.00 33.82 5.36
112 113 1.807142 GCACTTCAGTTACTTCAGGGC 59.193 52.381 0.00 0.00 0.00 5.19
113 114 3.007398 AGAGCACTTCAGTTACTTCAGGG 59.993 47.826 0.00 0.00 0.00 4.45
114 115 4.264460 AGAGCACTTCAGTTACTTCAGG 57.736 45.455 0.00 0.00 0.00 3.86
115 116 7.897575 ATTAAGAGCACTTCAGTTACTTCAG 57.102 36.000 0.00 0.00 37.53 3.02
116 117 8.559536 CAAATTAAGAGCACTTCAGTTACTTCA 58.440 33.333 0.00 0.00 37.53 3.02
117 118 8.774586 TCAAATTAAGAGCACTTCAGTTACTTC 58.225 33.333 0.00 0.00 37.53 3.01
118 119 8.677148 TCAAATTAAGAGCACTTCAGTTACTT 57.323 30.769 0.00 0.00 37.53 2.24
119 120 8.316640 CTCAAATTAAGAGCACTTCAGTTACT 57.683 34.615 0.00 0.00 37.53 2.24
132 133 3.614092 TGCAGGGAGCTCAAATTAAGAG 58.386 45.455 17.19 3.99 45.94 2.85
133 134 3.719268 TGCAGGGAGCTCAAATTAAGA 57.281 42.857 17.19 0.00 45.94 2.10
134 135 4.789012 TTTGCAGGGAGCTCAAATTAAG 57.211 40.909 17.19 0.00 45.94 1.85
135 136 5.011943 ACATTTTGCAGGGAGCTCAAATTAA 59.988 36.000 17.19 1.95 45.94 1.40
136 137 4.527816 ACATTTTGCAGGGAGCTCAAATTA 59.472 37.500 17.19 0.00 45.94 1.40
137 138 3.325716 ACATTTTGCAGGGAGCTCAAATT 59.674 39.130 17.19 1.52 45.94 1.82
138 139 2.901839 ACATTTTGCAGGGAGCTCAAAT 59.098 40.909 17.19 8.73 45.94 2.32
139 140 2.036217 CACATTTTGCAGGGAGCTCAAA 59.964 45.455 17.19 6.58 45.94 2.69
140 141 1.614903 CACATTTTGCAGGGAGCTCAA 59.385 47.619 17.19 0.00 45.94 3.02
141 142 1.250328 CACATTTTGCAGGGAGCTCA 58.750 50.000 17.19 0.00 45.94 4.26
142 143 0.529378 CCACATTTTGCAGGGAGCTC 59.471 55.000 4.71 4.71 45.94 4.09
143 144 0.901580 CCCACATTTTGCAGGGAGCT 60.902 55.000 0.00 0.00 45.94 4.09
144 145 1.593265 CCCACATTTTGCAGGGAGC 59.407 57.895 0.00 0.00 38.01 4.70
145 146 1.891722 GCCCCACATTTTGCAGGGAG 61.892 60.000 9.05 0.74 38.01 4.30
146 147 1.912763 GCCCCACATTTTGCAGGGA 60.913 57.895 9.05 0.00 38.01 4.20
147 148 2.664398 GCCCCACATTTTGCAGGG 59.336 61.111 0.55 0.55 36.40 4.45
148 149 2.664398 GGCCCCACATTTTGCAGG 59.336 61.111 0.00 0.00 0.00 4.85
149 150 1.914764 AGGGCCCCACATTTTGCAG 60.915 57.895 21.43 0.00 0.00 4.41
150 151 2.203750 AGGGCCCCACATTTTGCA 59.796 55.556 21.43 0.00 0.00 4.08
151 152 2.216331 ACAGGGCCCCACATTTTGC 61.216 57.895 21.43 0.00 0.00 3.68
152 153 1.672898 CACAGGGCCCCACATTTTG 59.327 57.895 21.43 11.23 0.00 2.44
153 154 2.216331 GCACAGGGCCCCACATTTT 61.216 57.895 21.43 0.00 36.11 1.82
154 155 2.604382 GCACAGGGCCCCACATTT 60.604 61.111 21.43 0.00 36.11 2.32
171 172 3.515316 CTATAGGGGTGTGCGGCCG 62.515 68.421 24.05 24.05 0.00 6.13
172 173 2.426023 CTATAGGGGTGTGCGGCC 59.574 66.667 0.00 0.00 0.00 6.13
173 174 2.426023 CCTATAGGGGTGTGCGGC 59.574 66.667 11.33 0.00 0.00 6.53
174 175 2.426023 GCCTATAGGGGTGTGCGG 59.574 66.667 20.58 0.00 35.18 5.69
175 176 1.227556 GTGCCTATAGGGGTGTGCG 60.228 63.158 20.58 0.00 35.18 5.34
176 177 1.227556 CGTGCCTATAGGGGTGTGC 60.228 63.158 20.58 5.25 35.18 4.57
177 178 1.445942 CCGTGCCTATAGGGGTGTG 59.554 63.158 20.58 0.00 35.18 3.82
178 179 2.440817 GCCGTGCCTATAGGGGTGT 61.441 63.158 20.58 0.00 35.18 4.16
179 180 2.426023 GCCGTGCCTATAGGGGTG 59.574 66.667 20.58 0.00 35.18 4.61
180 181 2.847715 GGCCGTGCCTATAGGGGT 60.848 66.667 20.58 0.00 46.69 4.95
190 191 1.281656 GTACAACACAAGGCCGTGC 59.718 57.895 19.37 0.00 40.73 5.34
191 192 1.018148 TTGTACAACACAAGGCCGTG 58.982 50.000 17.83 17.83 42.29 4.94
192 193 3.480342 TTGTACAACACAAGGCCGT 57.520 47.368 3.59 0.00 42.29 5.68
198 199 3.244981 GGGATAGGGGTTGTACAACACAA 60.245 47.826 35.22 25.18 46.17 3.33
199 200 2.306512 GGGATAGGGGTTGTACAACACA 59.693 50.000 35.22 20.80 46.17 3.72
200 201 2.306512 TGGGATAGGGGTTGTACAACAC 59.693 50.000 33.42 31.44 43.73 3.32
201 202 2.633692 TGGGATAGGGGTTGTACAACA 58.366 47.619 33.42 17.88 42.85 3.33
202 203 3.053917 ACATGGGATAGGGGTTGTACAAC 60.054 47.826 27.20 27.20 40.45 3.32
203 204 3.194620 ACATGGGATAGGGGTTGTACAA 58.805 45.455 3.59 3.59 0.00 2.41
204 205 2.853430 ACATGGGATAGGGGTTGTACA 58.147 47.619 0.00 0.00 0.00 2.90
205 206 3.945640 AACATGGGATAGGGGTTGTAC 57.054 47.619 0.00 0.00 0.00 2.90
206 207 4.325501 GGAAAACATGGGATAGGGGTTGTA 60.326 45.833 0.00 0.00 0.00 2.41
207 208 3.565670 GGAAAACATGGGATAGGGGTTGT 60.566 47.826 0.00 0.00 0.00 3.32
208 209 3.031013 GGAAAACATGGGATAGGGGTTG 58.969 50.000 0.00 0.00 0.00 3.77
209 210 2.933139 AGGAAAACATGGGATAGGGGTT 59.067 45.455 0.00 0.00 0.00 4.11
210 211 2.584773 AGGAAAACATGGGATAGGGGT 58.415 47.619 0.00 0.00 0.00 4.95
211 212 3.688049 AAGGAAAACATGGGATAGGGG 57.312 47.619 0.00 0.00 0.00 4.79
212 213 3.132824 GCAAAGGAAAACATGGGATAGGG 59.867 47.826 0.00 0.00 0.00 3.53
213 214 3.181487 CGCAAAGGAAAACATGGGATAGG 60.181 47.826 0.00 0.00 0.00 2.57
214 215 3.181487 CCGCAAAGGAAAACATGGGATAG 60.181 47.826 0.00 0.00 45.00 2.08
215 216 2.757868 CCGCAAAGGAAAACATGGGATA 59.242 45.455 0.00 0.00 45.00 2.59
216 217 1.550072 CCGCAAAGGAAAACATGGGAT 59.450 47.619 0.00 0.00 45.00 3.85
217 218 0.965439 CCGCAAAGGAAAACATGGGA 59.035 50.000 0.00 0.00 45.00 4.37
218 219 0.037419 CCCGCAAAGGAAAACATGGG 60.037 55.000 0.00 0.00 45.00 4.00
219 220 0.037419 CCCCGCAAAGGAAAACATGG 60.037 55.000 0.00 0.00 45.00 3.66
220 221 0.670239 GCCCCGCAAAGGAAAACATG 60.670 55.000 0.00 0.00 45.00 3.21
221 222 1.671166 GCCCCGCAAAGGAAAACAT 59.329 52.632 0.00 0.00 45.00 2.71
222 223 2.851071 CGCCCCGCAAAGGAAAACA 61.851 57.895 0.00 0.00 45.00 2.83
223 224 2.049526 CGCCCCGCAAAGGAAAAC 60.050 61.111 0.00 0.00 45.00 2.43
224 225 3.299190 CCGCCCCGCAAAGGAAAA 61.299 61.111 0.00 0.00 45.00 2.29
225 226 4.589675 ACCGCCCCGCAAAGGAAA 62.590 61.111 0.00 0.00 45.00 3.13
229 230 3.508840 GATCACCGCCCCGCAAAG 61.509 66.667 0.00 0.00 0.00 2.77
230 231 3.969250 GAGATCACCGCCCCGCAAA 62.969 63.158 0.00 0.00 0.00 3.68
231 232 4.467084 GAGATCACCGCCCCGCAA 62.467 66.667 0.00 0.00 0.00 4.85
233 234 4.899239 CTGAGATCACCGCCCCGC 62.899 72.222 0.00 0.00 0.00 6.13
234 235 3.147595 TCTGAGATCACCGCCCCG 61.148 66.667 0.00 0.00 0.00 5.73
235 236 2.501610 GTCTGAGATCACCGCCCC 59.498 66.667 0.00 0.00 0.00 5.80
236 237 2.501610 GGTCTGAGATCACCGCCC 59.498 66.667 0.00 0.00 0.00 6.13
240 241 0.176680 ATGCACGGTCTGAGATCACC 59.823 55.000 0.00 0.00 0.00 4.02
241 242 1.284657 CATGCACGGTCTGAGATCAC 58.715 55.000 0.00 0.00 0.00 3.06
242 243 0.897621 ACATGCACGGTCTGAGATCA 59.102 50.000 0.00 0.00 0.00 2.92
243 244 1.134995 TGACATGCACGGTCTGAGATC 60.135 52.381 18.11 0.00 36.26 2.75
244 245 0.897621 TGACATGCACGGTCTGAGAT 59.102 50.000 18.11 0.00 36.26 2.75
245 246 0.244721 CTGACATGCACGGTCTGAGA 59.755 55.000 18.11 1.26 36.63 3.27
246 247 0.037882 ACTGACATGCACGGTCTGAG 60.038 55.000 24.58 15.73 37.56 3.35
247 248 0.319813 CACTGACATGCACGGTCTGA 60.320 55.000 24.58 7.06 37.56 3.27
248 249 0.601046 ACACTGACATGCACGGTCTG 60.601 55.000 19.29 19.29 39.32 3.51
249 250 0.319900 GACACTGACATGCACGGTCT 60.320 55.000 18.11 1.71 36.26 3.85
250 251 0.319900 AGACACTGACATGCACGGTC 60.320 55.000 12.25 12.25 35.83 4.79
251 252 0.106708 AAGACACTGACATGCACGGT 59.893 50.000 0.00 0.00 0.00 4.83
252 253 2.918571 AAGACACTGACATGCACGG 58.081 52.632 0.00 0.00 0.00 4.94
371 372 2.281761 CCACTGACAGGTGCCCAC 60.282 66.667 7.51 0.00 36.03 4.61
372 373 4.269523 GCCACTGACAGGTGCCCA 62.270 66.667 7.51 0.00 36.03 5.36
375 376 3.790416 TTGGGCCACTGACAGGTGC 62.790 63.158 5.23 8.57 36.03 5.01
376 377 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
377 378 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
378 379 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
379 380 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
380 381 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
381 382 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
396 397 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
397 398 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
398 399 1.153745 CTCTGACGTACTGCAGGGC 60.154 63.158 19.93 9.18 33.05 5.19
399 400 0.965866 TCCTCTGACGTACTGCAGGG 60.966 60.000 19.93 9.39 33.05 4.45
400 401 0.453793 CTCCTCTGACGTACTGCAGG 59.546 60.000 19.93 2.38 33.05 4.85
401 402 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
402 403 1.595993 GGCTCCTCTGACGTACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
403 404 1.139947 GGCTCCTCTGACGTACTGC 59.860 63.158 0.00 0.00 0.00 4.40
404 405 0.736053 GAGGCTCCTCTGACGTACTG 59.264 60.000 2.15 0.00 39.80 2.74
405 406 0.745128 CGAGGCTCCTCTGACGTACT 60.745 60.000 9.32 0.00 40.69 2.73
406 407 1.025647 ACGAGGCTCCTCTGACGTAC 61.026 60.000 9.32 0.00 40.69 3.67
407 408 0.743701 GACGAGGCTCCTCTGACGTA 60.744 60.000 9.32 0.00 40.69 3.57
408 409 2.034376 ACGAGGCTCCTCTGACGT 59.966 61.111 9.32 4.69 40.69 4.34
409 410 1.380403 ATGACGAGGCTCCTCTGACG 61.380 60.000 9.32 4.08 40.69 4.35
410 411 0.383949 GATGACGAGGCTCCTCTGAC 59.616 60.000 9.32 8.28 40.69 3.51
411 412 0.753479 GGATGACGAGGCTCCTCTGA 60.753 60.000 9.32 0.00 40.69 3.27
412 413 0.754957 AGGATGACGAGGCTCCTCTG 60.755 60.000 9.32 9.55 40.69 3.35
413 414 1.618030 AGGATGACGAGGCTCCTCT 59.382 57.895 9.32 1.64 40.69 3.69
414 415 2.037871 GAGGATGACGAGGCTCCTC 58.962 63.158 9.32 7.77 46.01 3.71
415 416 0.105760 ATGAGGATGACGAGGCTCCT 60.106 55.000 9.32 0.00 42.12 3.69
416 417 0.316841 GATGAGGATGACGAGGCTCC 59.683 60.000 9.32 0.00 0.00 4.70
417 418 1.035923 TGATGAGGATGACGAGGCTC 58.964 55.000 3.87 3.87 0.00 4.70
418 419 1.343789 CATGATGAGGATGACGAGGCT 59.656 52.381 0.00 0.00 0.00 4.58
419 420 1.793258 CATGATGAGGATGACGAGGC 58.207 55.000 0.00 0.00 0.00 4.70
420 421 1.607509 GGCATGATGAGGATGACGAGG 60.608 57.143 0.00 0.00 0.00 4.63
421 422 1.607509 GGGCATGATGAGGATGACGAG 60.608 57.143 0.00 0.00 28.44 4.18
422 423 0.394192 GGGCATGATGAGGATGACGA 59.606 55.000 0.00 0.00 28.44 4.20
423 424 0.395686 AGGGCATGATGAGGATGACG 59.604 55.000 0.00 0.00 28.44 4.35
424 425 1.698532 AGAGGGCATGATGAGGATGAC 59.301 52.381 0.00 0.00 0.00 3.06
425 426 1.697982 CAGAGGGCATGATGAGGATGA 59.302 52.381 0.00 0.00 0.00 2.92
426 427 1.420514 ACAGAGGGCATGATGAGGATG 59.579 52.381 0.00 0.00 0.00 3.51
427 428 1.817087 ACAGAGGGCATGATGAGGAT 58.183 50.000 0.00 0.00 0.00 3.24
438 439 1.628846 TCAGGAGGTAAAACAGAGGGC 59.371 52.381 0.00 0.00 0.00 5.19
443 444 9.639601 GGATTTAAAAATCAGGAGGTAAAACAG 57.360 33.333 15.36 0.00 45.10 3.16
445 446 9.639601 CAGGATTTAAAAATCAGGAGGTAAAAC 57.360 33.333 15.36 0.00 45.10 2.43
446 447 9.374711 ACAGGATTTAAAAATCAGGAGGTAAAA 57.625 29.630 15.36 0.00 45.10 1.52
451 454 7.039784 TGACAACAGGATTTAAAAATCAGGAGG 60.040 37.037 15.36 6.12 45.10 4.30
453 456 7.255801 GGTGACAACAGGATTTAAAAATCAGGA 60.256 37.037 15.36 0.00 45.10 3.86
458 461 5.010617 AGCGGTGACAACAGGATTTAAAAAT 59.989 36.000 0.00 0.00 0.00 1.82
467 470 0.179234 TCAAAGCGGTGACAACAGGA 59.821 50.000 0.00 0.00 0.00 3.86
471 474 2.094417 GCTAGATCAAAGCGGTGACAAC 59.906 50.000 4.53 0.00 0.00 3.32
472 475 2.346803 GCTAGATCAAAGCGGTGACAA 58.653 47.619 4.53 0.00 0.00 3.18
488 491 1.362768 TGCTCTGATTTGCACGCTAG 58.637 50.000 0.00 0.00 33.94 3.42
490 493 4.384599 TGCTCTGATTTGCACGCT 57.615 50.000 0.00 0.00 33.94 5.07
495 498 2.818130 TTTTGGGTGCTCTGATTTGC 57.182 45.000 0.00 0.00 0.00 3.68
515 518 5.612725 TTTTTCTGTTTCTGGCCAATCTT 57.387 34.783 7.01 0.00 0.00 2.40
549 552 9.593134 TTGCTTTCACACACAATAGTTAAAATT 57.407 25.926 0.00 0.00 0.00 1.82
550 553 9.030301 GTTGCTTTCACACACAATAGTTAAAAT 57.970 29.630 0.00 0.00 0.00 1.82
551 554 8.247562 AGTTGCTTTCACACACAATAGTTAAAA 58.752 29.630 0.00 0.00 0.00 1.52
552 555 7.700234 CAGTTGCTTTCACACACAATAGTTAAA 59.300 33.333 0.00 0.00 0.00 1.52
558 561 4.260579 CGTCAGTTGCTTTCACACACAATA 60.261 41.667 0.00 0.00 0.00 1.90
577 580 2.750637 GTCGAGGAGGAGCCGTCA 60.751 66.667 0.00 0.00 43.43 4.35
579 582 3.999297 GAGGTCGAGGAGGAGCCGT 62.999 68.421 0.00 0.00 43.43 5.68
581 584 2.835895 GGAGGTCGAGGAGGAGCC 60.836 72.222 0.00 0.00 35.06 4.70
583 586 1.755008 GGTGGAGGTCGAGGAGGAG 60.755 68.421 0.00 0.00 0.00 3.69
584 587 1.875422 ATGGTGGAGGTCGAGGAGGA 61.875 60.000 0.00 0.00 0.00 3.71
585 588 1.381872 ATGGTGGAGGTCGAGGAGG 60.382 63.158 0.00 0.00 0.00 4.30
586 589 1.680522 CCATGGTGGAGGTCGAGGAG 61.681 65.000 2.57 0.00 40.96 3.69
587 590 1.685765 CCATGGTGGAGGTCGAGGA 60.686 63.158 2.57 0.00 40.96 3.71
588 591 0.686441 TACCATGGTGGAGGTCGAGG 60.686 60.000 28.17 0.00 40.96 4.63
589 592 1.191535 TTACCATGGTGGAGGTCGAG 58.808 55.000 28.17 0.00 40.96 4.04
590 593 1.276989 GTTTACCATGGTGGAGGTCGA 59.723 52.381 28.17 0.91 40.96 4.20
591 594 1.677820 GGTTTACCATGGTGGAGGTCG 60.678 57.143 28.17 0.00 40.96 4.79
592 595 1.677820 CGGTTTACCATGGTGGAGGTC 60.678 57.143 28.17 10.60 40.96 3.85
593 596 0.326927 CGGTTTACCATGGTGGAGGT 59.673 55.000 28.17 0.93 40.96 3.85
594 597 0.616371 TCGGTTTACCATGGTGGAGG 59.384 55.000 28.17 12.41 40.96 4.30
595 598 1.002659 TGTCGGTTTACCATGGTGGAG 59.997 52.381 28.17 13.53 40.96 3.86
596 599 1.057471 TGTCGGTTTACCATGGTGGA 58.943 50.000 28.17 13.08 40.96 4.02
597 600 2.122783 ATGTCGGTTTACCATGGTGG 57.877 50.000 28.17 11.01 45.02 4.61
598 601 2.817258 ACAATGTCGGTTTACCATGGTG 59.183 45.455 28.17 10.35 35.14 4.17
599 602 2.817258 CACAATGTCGGTTTACCATGGT 59.183 45.455 23.55 23.55 35.14 3.55
616 619 3.190744 TGGTTGTTGCGTTAAGAACACAA 59.809 39.130 13.51 0.00 42.58 3.33
632 635 2.564947 TGACTGTTTTTGCCTTGGTTGT 59.435 40.909 0.00 0.00 0.00 3.32
635 638 1.136891 GCTGACTGTTTTTGCCTTGGT 59.863 47.619 0.00 0.00 0.00 3.67
637 640 1.480205 CGCTGACTGTTTTTGCCTTG 58.520 50.000 0.00 0.00 0.00 3.61
639 642 0.751643 ACCGCTGACTGTTTTTGCCT 60.752 50.000 0.00 0.00 0.00 4.75
640 643 0.102300 AACCGCTGACTGTTTTTGCC 59.898 50.000 0.00 0.00 0.00 4.52
642 645 3.066203 AGGTAAACCGCTGACTGTTTTTG 59.934 43.478 0.00 0.00 42.08 2.44
643 646 3.284617 AGGTAAACCGCTGACTGTTTTT 58.715 40.909 0.00 0.00 42.08 1.94
667 670 4.202631 ACTGGTAAAAGGGTATTTGCAGGA 60.203 41.667 0.00 0.00 0.00 3.86
707 710 5.816258 GTCCTTTATTGAACCAGTACTAGGC 59.184 44.000 10.26 0.00 0.00 3.93
708 711 7.042335 CAGTCCTTTATTGAACCAGTACTAGG 58.958 42.308 0.00 2.26 0.00 3.02
709 712 6.535508 GCAGTCCTTTATTGAACCAGTACTAG 59.464 42.308 0.00 0.00 0.00 2.57
711 714 5.013183 AGCAGTCCTTTATTGAACCAGTACT 59.987 40.000 0.00 0.00 0.00 2.73
712 715 5.246307 AGCAGTCCTTTATTGAACCAGTAC 58.754 41.667 0.00 0.00 0.00 2.73
713 716 5.248477 AGAGCAGTCCTTTATTGAACCAGTA 59.752 40.000 0.00 0.00 0.00 2.74
714 717 4.042187 AGAGCAGTCCTTTATTGAACCAGT 59.958 41.667 0.00 0.00 0.00 4.00
715 718 4.583871 AGAGCAGTCCTTTATTGAACCAG 58.416 43.478 0.00 0.00 0.00 4.00
716 719 4.579869 GAGAGCAGTCCTTTATTGAACCA 58.420 43.478 0.00 0.00 0.00 3.67
717 720 3.619038 CGAGAGCAGTCCTTTATTGAACC 59.381 47.826 0.00 0.00 0.00 3.62
718 721 4.849111 CGAGAGCAGTCCTTTATTGAAC 57.151 45.455 0.00 0.00 0.00 3.18
845 884 5.417266 TCGATTCCAAAAATACTTGCCATGA 59.583 36.000 0.00 0.00 0.00 3.07
846 885 5.649557 TCGATTCCAAAAATACTTGCCATG 58.350 37.500 0.00 0.00 0.00 3.66
847 886 5.652014 TCTCGATTCCAAAAATACTTGCCAT 59.348 36.000 0.00 0.00 0.00 4.40
848 887 5.007034 TCTCGATTCCAAAAATACTTGCCA 58.993 37.500 0.00 0.00 0.00 4.92
849 888 5.560966 TCTCGATTCCAAAAATACTTGCC 57.439 39.130 0.00 0.00 0.00 4.52
1002 1174 2.806288 GCGATGTGCGTTTGACTAAT 57.194 45.000 0.00 0.00 43.41 1.73
1015 1195 0.603569 AAGACGACCAGAAGCGATGT 59.396 50.000 0.00 0.00 0.00 3.06
1059 1242 4.214327 GGAGAAGCTCGGCGAGGG 62.214 72.222 35.03 15.28 0.00 4.30
1069 1252 1.294857 GAAATGGCGAGAGGAGAAGC 58.705 55.000 0.00 0.00 0.00 3.86
1121 1305 3.087988 GGGGGAGAGGGGTTTGAC 58.912 66.667 0.00 0.00 0.00 3.18
1163 1347 2.962253 GGAATCTTCGCGCGGAGG 60.962 66.667 35.99 22.18 0.00 4.30
1212 1396 2.905807 GATACGGCGGGAGAGTCGG 61.906 68.421 13.24 0.00 0.00 4.79
1215 1399 3.593794 GCGATACGGCGGGAGAGT 61.594 66.667 13.24 0.00 0.00 3.24
1216 1400 3.288290 AGCGATACGGCGGGAGAG 61.288 66.667 13.24 0.00 38.18 3.20
1278 1462 1.963464 GAACGTTATCCGCCCCTGGA 61.963 60.000 0.00 0.00 43.58 3.86
1279 1463 1.523032 GAACGTTATCCGCCCCTGG 60.523 63.158 0.00 0.00 41.42 4.45
1283 1467 1.227468 GAGGGAACGTTATCCGCCC 60.227 63.158 12.92 12.92 40.62 6.13
1285 1469 0.594284 CGAGAGGGAACGTTATCCGC 60.594 60.000 0.00 8.27 40.62 5.54
1388 1573 4.066139 GCCCCACCAATCCCTGCT 62.066 66.667 0.00 0.00 0.00 4.24
1488 1674 6.551975 TCCATCTCCATTTACCGTAGATGTTA 59.448 38.462 7.97 0.00 32.91 2.41
1559 1746 2.412089 GCGAGTAAAAATGCAGTCGTCT 59.588 45.455 0.00 0.00 39.30 4.18
1560 1747 2.156891 TGCGAGTAAAAATGCAGTCGTC 59.843 45.455 0.00 0.00 39.30 4.20
1567 1754 6.400621 GGGTGTAAAAATGCGAGTAAAAATGC 60.401 38.462 0.00 0.00 0.00 3.56
1568 1755 6.866248 AGGGTGTAAAAATGCGAGTAAAAATG 59.134 34.615 0.00 0.00 0.00 2.32
1569 1756 6.866248 CAGGGTGTAAAAATGCGAGTAAAAAT 59.134 34.615 0.00 0.00 0.00 1.82
1570 1757 6.210078 CAGGGTGTAAAAATGCGAGTAAAAA 58.790 36.000 0.00 0.00 0.00 1.94
1571 1758 5.278561 CCAGGGTGTAAAAATGCGAGTAAAA 60.279 40.000 0.00 0.00 0.00 1.52
1572 1759 4.216687 CCAGGGTGTAAAAATGCGAGTAAA 59.783 41.667 0.00 0.00 0.00 2.01
1573 1760 3.754323 CCAGGGTGTAAAAATGCGAGTAA 59.246 43.478 0.00 0.00 0.00 2.24
1574 1761 3.340034 CCAGGGTGTAAAAATGCGAGTA 58.660 45.455 0.00 0.00 0.00 2.59
1575 1762 2.159382 CCAGGGTGTAAAAATGCGAGT 58.841 47.619 0.00 0.00 0.00 4.18
1576 1763 1.135402 GCCAGGGTGTAAAAATGCGAG 60.135 52.381 0.00 0.00 0.00 5.03
1577 1764 0.885196 GCCAGGGTGTAAAAATGCGA 59.115 50.000 0.00 0.00 0.00 5.10
1578 1765 0.108851 GGCCAGGGTGTAAAAATGCG 60.109 55.000 0.00 0.00 0.00 4.73
1594 1781 4.153655 CCTGTTTCTTCTACTAAAACGGCC 59.846 45.833 0.00 0.00 37.75 6.13
1614 1801 4.081697 ACCAAACTGAAACCTTCAAACCTG 60.082 41.667 0.00 0.00 39.58 4.00
1615 1802 4.093743 ACCAAACTGAAACCTTCAAACCT 58.906 39.130 0.00 0.00 39.58 3.50
1616 1803 4.465632 ACCAAACTGAAACCTTCAAACC 57.534 40.909 0.00 0.00 39.58 3.27
1617 1804 5.474825 TCAACCAAACTGAAACCTTCAAAC 58.525 37.500 0.00 0.00 39.58 2.93
1618 1805 5.730296 TCAACCAAACTGAAACCTTCAAA 57.270 34.783 0.00 0.00 39.58 2.69
1619 1806 5.656416 AGATCAACCAAACTGAAACCTTCAA 59.344 36.000 0.00 0.00 39.58 2.69
1620 1807 5.067674 CAGATCAACCAAACTGAAACCTTCA 59.932 40.000 0.00 0.00 38.17 3.02
1621 1808 5.067805 ACAGATCAACCAAACTGAAACCTTC 59.932 40.000 0.00 0.00 34.88 3.46
1622 1809 4.956075 ACAGATCAACCAAACTGAAACCTT 59.044 37.500 0.00 0.00 34.88 3.50
1651 1838 5.974108 TCAGTTGCTTATACTACTTGGGAC 58.026 41.667 0.00 0.00 0.00 4.46
1677 1871 7.201266 CGCAGCTCAAATCAACATTTAAACTAC 60.201 37.037 0.00 0.00 30.51 2.73
1683 1877 3.505680 ACCGCAGCTCAAATCAACATTTA 59.494 39.130 0.00 0.00 30.51 1.40
1689 1883 1.159285 CTCACCGCAGCTCAAATCAA 58.841 50.000 0.00 0.00 0.00 2.57
1748 1942 4.598062 GCGTATGCTAAAATGGAGGAAAC 58.402 43.478 0.00 0.00 38.39 2.78
1765 1959 4.123497 TGATAAGCAGACACAAGCGTAT 57.877 40.909 0.00 0.00 37.96 3.06
1778 1972 2.373540 AACGCGGTAACTGATAAGCA 57.626 45.000 12.47 0.00 0.00 3.91
1803 2003 6.749578 CGATACGAATCTATCAGATTTCCTGG 59.250 42.308 3.09 0.00 44.41 4.45
1804 2004 6.252441 GCGATACGAATCTATCAGATTTCCTG 59.748 42.308 3.09 0.00 44.41 3.86
1813 2013 3.575630 GCAAGGCGATACGAATCTATCA 58.424 45.455 0.00 0.00 0.00 2.15
1833 2034 2.273370 TGAAGTGAGGTATCGTTCGC 57.727 50.000 0.00 0.00 0.00 4.70
1835 2036 6.369065 ACTGAAAATGAAGTGAGGTATCGTTC 59.631 38.462 0.00 0.00 0.00 3.95
1836 2037 6.147821 CACTGAAAATGAAGTGAGGTATCGTT 59.852 38.462 0.00 0.00 45.43 3.85
1838 2039 5.063944 CCACTGAAAATGAAGTGAGGTATCG 59.936 44.000 4.43 0.00 45.43 2.92
1839 2040 5.163713 GCCACTGAAAATGAAGTGAGGTATC 60.164 44.000 4.43 0.00 45.43 2.24
1842 2043 2.887152 GCCACTGAAAATGAAGTGAGGT 59.113 45.455 4.43 0.00 45.43 3.85
1846 2047 6.749118 GCTATTTAGCCACTGAAAATGAAGTG 59.251 38.462 0.00 0.00 43.39 3.16
1847 2048 6.856895 GCTATTTAGCCACTGAAAATGAAGT 58.143 36.000 0.00 0.00 43.39 3.01
1877 2078 8.770438 AATACTCAACTCTGTTCTGAATTCTC 57.230 34.615 7.05 0.00 0.00 2.87
1878 2079 9.868277 CTAATACTCAACTCTGTTCTGAATTCT 57.132 33.333 7.05 0.00 0.00 2.40
1879 2080 8.599774 GCTAATACTCAACTCTGTTCTGAATTC 58.400 37.037 0.00 0.00 0.00 2.17
1883 2084 6.590234 TGCTAATACTCAACTCTGTTCTGA 57.410 37.500 0.00 0.00 0.00 3.27
1965 2167 0.763223 AACTGGTCCTCTTCCGGTGT 60.763 55.000 0.00 0.00 42.92 4.16
2052 2254 2.633509 CCCGAGTCCCGAAGTTCGT 61.634 63.158 22.87 5.15 41.76 3.85
2174 2376 0.325933 TGGACTTCAGGATGCAGTGG 59.674 55.000 0.00 0.00 44.30 4.00
2184 2386 3.223661 AGCTTTCGCTGGACTTCAG 57.776 52.632 0.00 0.00 46.86 3.02
2222 2424 4.329801 TCGCAGTGCATTATGAGTAAGTTG 59.670 41.667 16.83 0.00 0.00 3.16
2282 2484 1.673033 CCCAGGTACAACAAGAGAGCG 60.673 57.143 0.00 0.00 0.00 5.03
2303 2505 5.645067 TGTTTTCTGCTCATCTGAATACTGG 59.355 40.000 0.00 0.00 36.39 4.00
2357 2559 3.923461 GTGAGAACATCTCCAAGAACTCG 59.077 47.826 5.00 0.00 42.73 4.18
2510 2712 4.081917 GGACAAAAACCACCTTGACTTTGA 60.082 41.667 0.00 0.00 0.00 2.69
2846 3048 2.818130 ATGTTTTTGCCAAGTCGCAT 57.182 40.000 0.00 0.00 38.87 4.73
2924 3133 9.262358 GACTAAGAAATATGGATGTTGGAGTAC 57.738 37.037 0.00 0.00 0.00 2.73
3082 3294 2.293122 ACGCAATTTTCACAGCTTAGCA 59.707 40.909 7.07 0.00 0.00 3.49
3097 3309 4.036971 TGCAGTAACAAGGTTTTACGCAAT 59.963 37.500 8.34 0.00 36.72 3.56
3314 3528 2.032799 TGAAAGCGGTGTTGAACATGAC 59.967 45.455 0.00 0.00 0.00 3.06
3650 3865 2.194597 GGGGTGTGTCCAGTGCAA 59.805 61.111 0.00 0.00 38.11 4.08
3752 3967 6.151817 ACCAGAGAAATTATCAAAGCCAAGTC 59.848 38.462 0.00 0.00 0.00 3.01
3994 4209 5.512576 GGGGTGTAACTGTAACTGAAGATGT 60.513 44.000 0.00 0.00 36.74 3.06
4170 4385 5.006386 GGTATCCAAGATGTTGATGATCCC 58.994 45.833 3.74 0.00 35.46 3.85
4252 4467 5.167921 AGTATTTATGGGTAAGGTAGGGGG 58.832 45.833 0.00 0.00 0.00 5.40
4368 4583 6.385649 TCTTGTGATTTAACCAGTTGTTCC 57.614 37.500 0.00 0.00 38.42 3.62
4459 4674 7.070821 TGCTTTAGGGGTACTAGATTCCTTTAG 59.929 40.741 0.00 1.09 32.16 1.85
4499 4714 1.202915 TCAGAGGAATTGCAGGCAACA 60.203 47.619 9.13 0.00 38.88 3.33
4520 4735 2.122768 CTAAGGGCCCTGAGTCTGAAT 58.877 52.381 29.50 8.87 0.00 2.57
4565 4780 2.822255 GCGGCGATGCTGGGTTAA 60.822 61.111 12.98 0.00 35.15 2.01
4600 4815 1.679969 ATAGGAGGAGGGGGAGGTGG 61.680 65.000 0.00 0.00 0.00 4.61
4601 4816 1.167943 TATAGGAGGAGGGGGAGGTG 58.832 60.000 0.00 0.00 0.00 4.00
4692 4907 2.448542 AGTGCTGGTGGAGGTGGT 60.449 61.111 0.00 0.00 0.00 4.16
4715 4930 5.049828 GTGTAGCATTTTCAAAAGGTGCTT 58.950 37.500 14.62 2.29 40.12 3.91
5357 5868 0.248289 CGGTGGTCGGGTTACTGATT 59.752 55.000 0.00 0.00 33.82 2.57
5409 5920 3.883830 TTGCTTGGCAAAGAGTTTGAA 57.116 38.095 4.56 0.00 45.96 2.69
5454 5965 1.119574 ATAATGTAGGAGGCGGCGGT 61.120 55.000 9.78 0.00 0.00 5.68
5457 5968 2.770164 ATGATAATGTAGGAGGCGGC 57.230 50.000 0.00 0.00 0.00 6.53
5590 6101 2.094675 CCATAAGCTTCCCTGTGTTGG 58.905 52.381 0.00 0.00 0.00 3.77
5677 6188 2.632512 CCCGGCCCATTGCTATTTTAAT 59.367 45.455 0.00 0.00 40.92 1.40
5722 6233 6.282199 TCTCTGGAGTCCTGTTAAACATAC 57.718 41.667 11.33 0.00 0.00 2.39
5741 6252 4.710865 TCAAGCTCAGACAGATCAATCTCT 59.289 41.667 0.00 0.00 34.22 3.10
5794 6305 1.945522 CGTGTCCGTTTTGCATCCA 59.054 52.632 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.