Multiple sequence alignment - TraesCS6A01G356700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G356700 chr6A 100.000 4838 0 0 1 4838 587693869 587689032 0.000000e+00 8935
1 TraesCS6A01G356700 chr6A 84.121 2456 325 33 1071 3495 587745716 587743295 0.000000e+00 2314
2 TraesCS6A01G356700 chr6A 91.285 459 40 0 190 648 587748365 587747907 1.140000e-175 627
3 TraesCS6A01G356700 chr6A 92.079 101 8 0 3891 3991 587743109 587743009 5.050000e-30 143
4 TraesCS6A01G356700 chr6B 89.301 2346 215 21 920 3233 664064962 664062621 0.000000e+00 2909
5 TraesCS6A01G356700 chr6B 91.792 1791 130 11 1017 2796 664024146 664022362 0.000000e+00 2477
6 TraesCS6A01G356700 chr6B 86.527 1143 133 10 2371 3497 664001511 664000374 0.000000e+00 1238
7 TraesCS6A01G356700 chr6B 87.657 794 52 13 3840 4616 664000157 663999393 0.000000e+00 881
8 TraesCS6A01G356700 chr6B 90.733 464 43 0 190 653 664025548 664025085 1.910000e-173 619
9 TraesCS6A01G356700 chr6B 91.028 457 40 1 197 653 664067954 664067499 2.470000e-172 616
10 TraesCS6A01G356700 chr6B 83.274 562 70 9 2948 3493 664022366 664021813 3.360000e-136 496
11 TraesCS6A01G356700 chr6B 82.521 349 38 9 3297 3626 664062171 664061827 7.930000e-73 285
12 TraesCS6A01G356700 chr6B 93.617 188 4 2 4656 4838 663999396 663999212 1.720000e-69 274
13 TraesCS6A01G356700 chr6B 95.152 165 8 0 729 893 664024949 664024785 1.340000e-65 261
14 TraesCS6A01G356700 chr6B 90.909 165 13 2 729 893 664065594 664065432 2.270000e-53 220
15 TraesCS6A01G356700 chr6D 86.574 1229 157 6 2120 3344 438836492 438835268 0.000000e+00 1349
16 TraesCS6A01G356700 chr6D 93.943 875 48 4 1252 2123 438837523 438836651 0.000000e+00 1317
17 TraesCS6A01G356700 chr6D 77.826 1150 120 70 3726 4838 438834909 438833858 1.940000e-163 586
18 TraesCS6A01G356700 chr6D 89.440 464 49 0 190 653 438838550 438838087 1.940000e-163 586
19 TraesCS6A01G356700 chr6D 93.939 165 8 1 729 893 438837954 438837792 1.040000e-61 248
20 TraesCS6A01G356700 chr4A 77.157 823 161 20 1379 2185 729746143 729746954 2.050000e-123 453
21 TraesCS6A01G356700 chr4A 76.478 778 159 17 1379 2143 728831411 728832177 7.540000e-108 401
22 TraesCS6A01G356700 chr4A 78.909 550 96 14 1649 2185 729147732 729148274 5.960000e-94 355
23 TraesCS6A01G356700 chr4A 91.129 124 5 1 1 124 599109604 599109721 3.870000e-36 163
24 TraesCS6A01G356700 chr4A 91.129 124 5 1 1 124 599187416 599187533 3.870000e-36 163
25 TraesCS6A01G356700 chr4A 91.129 124 5 1 1 124 599230410 599230527 3.870000e-36 163
26 TraesCS6A01G356700 chr4A 94.624 93 4 1 3620 3712 536887987 536888078 5.050000e-30 143
27 TraesCS6A01G356700 chr7D 77.232 773 155 16 1379 2140 10038720 10039482 2.670000e-117 433
28 TraesCS6A01G356700 chr1A 76.556 755 159 14 1396 2141 580741805 580741060 9.760000e-107 398
29 TraesCS6A01G356700 chr1A 73.442 1043 244 28 1447 2471 580630459 580629432 1.280000e-95 361
30 TraesCS6A01G356700 chr1D 74.156 1037 220 39 1452 2464 483693208 483692196 2.110000e-103 387
31 TraesCS6A01G356700 chr1D 75.521 768 164 20 1389 2141 483874007 483873249 5.960000e-94 355
32 TraesCS6A01G356700 chr1D 75.163 769 169 19 1389 2142 483881195 483880434 4.640000e-90 342
33 TraesCS6A01G356700 chr1D 81.897 232 40 2 256 486 483697049 483696819 1.370000e-45 195
34 TraesCS6A01G356700 chr1B 75.635 788 174 17 1387 2162 673863548 673862767 4.570000e-100 375
35 TraesCS6A01G356700 chr4B 77.656 546 107 13 1649 2185 646578336 646577797 7.810000e-83 318
36 TraesCS6A01G356700 chrUn 91.129 124 5 1 1 124 216659291 216659408 3.870000e-36 163
37 TraesCS6A01G356700 chr7B 95.652 92 3 1 3624 3714 487811773 487811864 3.900000e-31 147
38 TraesCS6A01G356700 chr5A 93.814 97 4 2 3625 3721 285846639 285846733 1.400000e-30 145
39 TraesCS6A01G356700 chr3B 95.604 91 2 2 3621 3711 672737289 672737201 1.400000e-30 145
40 TraesCS6A01G356700 chr4D 93.750 96 4 2 3616 3711 190532985 190533078 5.050000e-30 143
41 TraesCS6A01G356700 chr4D 92.708 96 5 2 3628 3723 437299985 437299892 2.350000e-28 137
42 TraesCS6A01G356700 chr3A 95.556 90 2 2 3621 3710 39237398 39237311 5.050000e-30 143
43 TraesCS6A01G356700 chr3A 95.556 90 2 2 3621 3710 481865765 481865678 5.050000e-30 143
44 TraesCS6A01G356700 chr2A 91.919 99 6 2 3613 3710 187514283 187514380 2.350000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G356700 chr6A 587689032 587693869 4837 True 8935.000000 8935 100.000000 1 4838 1 chr6A.!!$R1 4837
1 TraesCS6A01G356700 chr6A 587743009 587748365 5356 True 1028.000000 2314 89.161667 190 3991 3 chr6A.!!$R2 3801
2 TraesCS6A01G356700 chr6B 664061827 664067954 6127 True 1007.500000 2909 88.439750 197 3626 4 chr6B.!!$R3 3429
3 TraesCS6A01G356700 chr6B 664021813 664025548 3735 True 963.250000 2477 90.237750 190 3493 4 chr6B.!!$R2 3303
4 TraesCS6A01G356700 chr6B 663999212 664001511 2299 True 797.666667 1238 89.267000 2371 4838 3 chr6B.!!$R1 2467
5 TraesCS6A01G356700 chr6D 438833858 438838550 4692 True 817.200000 1349 88.344400 190 4838 5 chr6D.!!$R1 4648
6 TraesCS6A01G356700 chr4A 729746143 729746954 811 False 453.000000 453 77.157000 1379 2185 1 chr4A.!!$F7 806
7 TraesCS6A01G356700 chr4A 728831411 728832177 766 False 401.000000 401 76.478000 1379 2143 1 chr4A.!!$F5 764
8 TraesCS6A01G356700 chr4A 729147732 729148274 542 False 355.000000 355 78.909000 1649 2185 1 chr4A.!!$F6 536
9 TraesCS6A01G356700 chr7D 10038720 10039482 762 False 433.000000 433 77.232000 1379 2140 1 chr7D.!!$F1 761
10 TraesCS6A01G356700 chr1A 580741060 580741805 745 True 398.000000 398 76.556000 1396 2141 1 chr1A.!!$R2 745
11 TraesCS6A01G356700 chr1A 580629432 580630459 1027 True 361.000000 361 73.442000 1447 2471 1 chr1A.!!$R1 1024
12 TraesCS6A01G356700 chr1D 483873249 483874007 758 True 355.000000 355 75.521000 1389 2141 1 chr1D.!!$R1 752
13 TraesCS6A01G356700 chr1D 483880434 483881195 761 True 342.000000 342 75.163000 1389 2142 1 chr1D.!!$R2 753
14 TraesCS6A01G356700 chr1D 483692196 483697049 4853 True 291.000000 387 78.026500 256 2464 2 chr1D.!!$R3 2208
15 TraesCS6A01G356700 chr1B 673862767 673863548 781 True 375.000000 375 75.635000 1387 2162 1 chr1B.!!$R1 775
16 TraesCS6A01G356700 chr4B 646577797 646578336 539 True 318.000000 318 77.656000 1649 2185 1 chr4B.!!$R1 536

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 5918 0.036105 AGTGCGATCATGAGCCAACA 60.036 50.0 5.18 0.0 0.00 3.33 F
1303 6872 0.502275 CATTTGCGTGGCGTGTTTTC 59.498 50.0 0.00 0.0 0.00 2.29 F
1855 7498 1.005340 CTCTTCATCTCCGCACTTGC 58.995 55.0 0.00 0.0 37.78 4.01 F
3607 9959 0.111446 TGGTTTGAGAAATGGCCGGA 59.889 50.0 5.05 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2609 8440 0.541998 TCCAGCGAACTCCTCTCCAA 60.542 55.000 0.00 0.0 0.0 3.53 R
2682 8513 1.142262 TGCACTCATCATCATCCCAGG 59.858 52.381 0.00 0.0 0.0 4.45 R
3697 10049 0.108756 GCTTGTGTACTCCCTCCGTC 60.109 60.000 0.00 0.0 0.0 4.79 R
4543 11161 0.833287 CGGGAACTGACTCCATGGAT 59.167 55.000 16.63 5.6 37.2 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.625747 TGTACATGTACATCCAAATATCAACAT 57.374 29.630 30.31 0.00 40.77 2.71
39 40 9.882996 GTACATGTACATCCAAATATCAACATG 57.117 33.333 27.37 9.81 45.22 3.21
40 41 7.944061 ACATGTACATCCAAATATCAACATGG 58.056 34.615 5.07 0.00 44.44 3.66
41 42 7.779326 ACATGTACATCCAAATATCAACATGGA 59.221 33.333 5.07 0.00 44.44 3.41
42 43 7.566760 TGTACATCCAAATATCAACATGGAC 57.433 36.000 0.00 0.00 44.25 4.02
43 44 5.756195 ACATCCAAATATCAACATGGACG 57.244 39.130 0.00 0.00 44.25 4.79
44 45 5.192927 ACATCCAAATATCAACATGGACGT 58.807 37.500 0.00 0.00 44.25 4.34
45 46 5.066375 ACATCCAAATATCAACATGGACGTG 59.934 40.000 0.00 0.00 44.25 4.49
46 47 4.584874 TCCAAATATCAACATGGACGTGT 58.415 39.130 0.00 0.00 37.05 4.49
47 48 5.735766 TCCAAATATCAACATGGACGTGTA 58.264 37.500 0.00 0.00 37.05 2.90
48 49 6.174049 TCCAAATATCAACATGGACGTGTAA 58.826 36.000 0.00 0.00 37.05 2.41
49 50 6.092944 TCCAAATATCAACATGGACGTGTAAC 59.907 38.462 0.00 0.00 37.05 2.50
50 51 6.093495 CCAAATATCAACATGGACGTGTAACT 59.907 38.462 0.00 0.00 34.82 2.24
51 52 7.361713 CCAAATATCAACATGGACGTGTAACTT 60.362 37.037 0.00 0.00 34.82 2.66
52 53 6.662414 ATATCAACATGGACGTGTAACTTG 57.338 37.500 0.00 0.00 31.75 3.16
53 54 2.546368 TCAACATGGACGTGTAACTTGC 59.454 45.455 0.00 0.00 31.75 4.01
54 55 2.248280 ACATGGACGTGTAACTTGCA 57.752 45.000 0.00 0.00 41.32 4.08
55 56 1.871039 ACATGGACGTGTAACTTGCAC 59.129 47.619 0.00 0.12 39.62 4.57
56 57 2.143122 CATGGACGTGTAACTTGCACT 58.857 47.619 8.19 0.00 39.62 4.40
57 58 3.243941 ACATGGACGTGTAACTTGCACTA 60.244 43.478 8.19 0.00 39.62 2.74
58 59 3.455990 TGGACGTGTAACTTGCACTAA 57.544 42.857 8.19 0.00 29.96 2.24
59 60 3.794717 TGGACGTGTAACTTGCACTAAA 58.205 40.909 8.19 0.00 29.96 1.85
60 61 4.190001 TGGACGTGTAACTTGCACTAAAA 58.810 39.130 8.19 0.00 29.96 1.52
61 62 4.634883 TGGACGTGTAACTTGCACTAAAAA 59.365 37.500 8.19 0.00 29.96 1.94
94 95 9.453572 AAATTGCATGTAGACTTAGATTTCTGA 57.546 29.630 0.00 0.00 0.00 3.27
95 96 9.453572 AATTGCATGTAGACTTAGATTTCTGAA 57.546 29.630 0.00 0.00 0.00 3.02
96 97 8.846943 TTGCATGTAGACTTAGATTTCTGAAA 57.153 30.769 5.15 5.15 0.00 2.69
97 98 8.484641 TGCATGTAGACTTAGATTTCTGAAAG 57.515 34.615 8.95 0.00 0.00 2.62
98 99 7.550551 TGCATGTAGACTTAGATTTCTGAAAGG 59.449 37.037 8.95 0.02 0.00 3.11
99 100 7.766278 GCATGTAGACTTAGATTTCTGAAAGGA 59.234 37.037 8.95 0.00 0.00 3.36
100 101 9.658799 CATGTAGACTTAGATTTCTGAAAGGAA 57.341 33.333 8.95 2.27 34.64 3.36
101 102 9.883142 ATGTAGACTTAGATTTCTGAAAGGAAG 57.117 33.333 8.95 12.54 32.76 3.46
102 103 9.090103 TGTAGACTTAGATTTCTGAAAGGAAGA 57.910 33.333 19.75 3.52 32.76 2.87
103 104 9.930693 GTAGACTTAGATTTCTGAAAGGAAGAA 57.069 33.333 19.75 6.87 32.76 2.52
105 106 7.606073 AGACTTAGATTTCTGAAAGGAAGAAGC 59.394 37.037 19.75 12.34 32.76 3.86
106 107 7.227156 ACTTAGATTTCTGAAAGGAAGAAGCA 58.773 34.615 19.75 0.00 32.76 3.91
107 108 5.956068 AGATTTCTGAAAGGAAGAAGCAC 57.044 39.130 8.95 0.00 32.76 4.40
108 109 5.380043 AGATTTCTGAAAGGAAGAAGCACA 58.620 37.500 8.95 0.00 32.76 4.57
109 110 5.829924 AGATTTCTGAAAGGAAGAAGCACAA 59.170 36.000 8.95 0.00 32.76 3.33
110 111 5.913137 TTTCTGAAAGGAAGAAGCACAAA 57.087 34.783 0.00 0.00 35.20 2.83
111 112 5.913137 TTCTGAAAGGAAGAAGCACAAAA 57.087 34.783 0.00 0.00 0.00 2.44
112 113 5.913137 TCTGAAAGGAAGAAGCACAAAAA 57.087 34.783 0.00 0.00 0.00 1.94
113 114 5.650543 TCTGAAAGGAAGAAGCACAAAAAC 58.349 37.500 0.00 0.00 0.00 2.43
114 115 5.184864 TCTGAAAGGAAGAAGCACAAAAACA 59.815 36.000 0.00 0.00 0.00 2.83
115 116 5.167845 TGAAAGGAAGAAGCACAAAAACAC 58.832 37.500 0.00 0.00 0.00 3.32
116 117 4.799564 AAGGAAGAAGCACAAAAACACA 57.200 36.364 0.00 0.00 0.00 3.72
117 118 5.343307 AAGGAAGAAGCACAAAAACACAT 57.657 34.783 0.00 0.00 0.00 3.21
118 119 4.936891 AGGAAGAAGCACAAAAACACATC 58.063 39.130 0.00 0.00 0.00 3.06
119 120 4.402155 AGGAAGAAGCACAAAAACACATCA 59.598 37.500 0.00 0.00 0.00 3.07
120 121 5.105392 AGGAAGAAGCACAAAAACACATCAA 60.105 36.000 0.00 0.00 0.00 2.57
121 122 5.580297 GGAAGAAGCACAAAAACACATCAAA 59.420 36.000 0.00 0.00 0.00 2.69
122 123 6.407475 AAGAAGCACAAAAACACATCAAAC 57.593 33.333 0.00 0.00 0.00 2.93
123 124 5.477510 AGAAGCACAAAAACACATCAAACA 58.522 33.333 0.00 0.00 0.00 2.83
124 125 5.577945 AGAAGCACAAAAACACATCAAACAG 59.422 36.000 0.00 0.00 0.00 3.16
125 126 4.819769 AGCACAAAAACACATCAAACAGT 58.180 34.783 0.00 0.00 0.00 3.55
126 127 5.237048 AGCACAAAAACACATCAAACAGTT 58.763 33.333 0.00 0.00 0.00 3.16
127 128 5.348451 AGCACAAAAACACATCAAACAGTTC 59.652 36.000 0.00 0.00 0.00 3.01
128 129 5.348451 GCACAAAAACACATCAAACAGTTCT 59.652 36.000 0.00 0.00 0.00 3.01
129 130 6.670452 GCACAAAAACACATCAAACAGTTCTG 60.670 38.462 0.00 0.00 0.00 3.02
130 131 5.348451 ACAAAAACACATCAAACAGTTCTGC 59.652 36.000 0.00 0.00 0.00 4.26
131 132 4.717233 AAACACATCAAACAGTTCTGCA 57.283 36.364 0.00 0.00 0.00 4.41
132 133 4.924305 AACACATCAAACAGTTCTGCAT 57.076 36.364 0.00 0.00 0.00 3.96
133 134 4.924305 ACACATCAAACAGTTCTGCATT 57.076 36.364 0.00 0.00 0.00 3.56
134 135 4.613944 ACACATCAAACAGTTCTGCATTG 58.386 39.130 10.60 10.60 0.00 2.82
135 136 4.338964 ACACATCAAACAGTTCTGCATTGA 59.661 37.500 17.48 17.48 34.80 2.57
136 137 4.915667 CACATCAAACAGTTCTGCATTGAG 59.084 41.667 18.92 14.96 33.91 3.02
137 138 4.022589 ACATCAAACAGTTCTGCATTGAGG 60.023 41.667 20.80 20.80 37.68 3.86
138 139 2.294233 TCAAACAGTTCTGCATTGAGGC 59.706 45.455 13.68 0.00 0.00 4.70
139 140 1.985473 AACAGTTCTGCATTGAGGCA 58.015 45.000 0.00 0.00 42.53 4.75
140 141 1.985473 ACAGTTCTGCATTGAGGCAA 58.015 45.000 0.00 0.00 44.40 4.52
141 142 1.884579 ACAGTTCTGCATTGAGGCAAG 59.115 47.619 0.00 0.00 44.40 4.01
142 143 1.201647 CAGTTCTGCATTGAGGCAAGG 59.798 52.381 0.00 0.00 44.40 3.61
143 144 1.074405 AGTTCTGCATTGAGGCAAGGA 59.926 47.619 0.00 0.00 44.40 3.36
144 145 1.200948 GTTCTGCATTGAGGCAAGGAC 59.799 52.381 0.00 0.00 44.40 3.85
145 146 0.322816 TCTGCATTGAGGCAAGGACC 60.323 55.000 0.00 0.00 44.40 4.46
146 147 0.323178 CTGCATTGAGGCAAGGACCT 60.323 55.000 0.00 0.00 44.40 3.85
147 148 0.112995 TGCATTGAGGCAAGGACCTT 59.887 50.000 0.00 0.00 41.32 3.50
148 149 0.813821 GCATTGAGGCAAGGACCTTC 59.186 55.000 2.91 0.00 41.32 3.46
149 150 1.615384 GCATTGAGGCAAGGACCTTCT 60.615 52.381 2.91 0.00 41.32 2.85
150 151 2.356125 GCATTGAGGCAAGGACCTTCTA 60.356 50.000 2.91 0.00 41.32 2.10
151 152 3.686691 GCATTGAGGCAAGGACCTTCTAT 60.687 47.826 2.91 0.00 41.32 1.98
152 153 3.634397 TTGAGGCAAGGACCTTCTATG 57.366 47.619 2.91 0.00 41.32 2.23
153 154 2.551270 TGAGGCAAGGACCTTCTATGT 58.449 47.619 2.91 0.00 41.32 2.29
154 155 2.501723 TGAGGCAAGGACCTTCTATGTC 59.498 50.000 2.91 0.00 41.32 3.06
159 160 3.218974 GGACCTTCTATGTCCCCGA 57.781 57.895 0.00 0.00 45.38 5.14
160 161 1.718280 GGACCTTCTATGTCCCCGAT 58.282 55.000 0.00 0.00 45.38 4.18
161 162 2.047830 GGACCTTCTATGTCCCCGATT 58.952 52.381 0.00 0.00 45.38 3.34
162 163 2.037381 GGACCTTCTATGTCCCCGATTC 59.963 54.545 0.00 0.00 45.38 2.52
163 164 2.966516 GACCTTCTATGTCCCCGATTCT 59.033 50.000 0.00 0.00 0.00 2.40
164 165 3.385115 ACCTTCTATGTCCCCGATTCTT 58.615 45.455 0.00 0.00 0.00 2.52
165 166 3.388350 ACCTTCTATGTCCCCGATTCTTC 59.612 47.826 0.00 0.00 0.00 2.87
166 167 3.244249 CCTTCTATGTCCCCGATTCTTCC 60.244 52.174 0.00 0.00 0.00 3.46
167 168 2.326428 TCTATGTCCCCGATTCTTCCC 58.674 52.381 0.00 0.00 0.00 3.97
168 169 1.000955 CTATGTCCCCGATTCTTCCCG 59.999 57.143 0.00 0.00 0.00 5.14
169 170 1.696097 ATGTCCCCGATTCTTCCCGG 61.696 60.000 0.00 0.00 44.94 5.73
173 174 2.504519 CCGATTCTTCCCGGGGTC 59.495 66.667 23.50 10.39 41.89 4.46
174 175 2.363975 CCGATTCTTCCCGGGGTCA 61.364 63.158 23.50 3.93 41.89 4.02
175 176 1.153429 CGATTCTTCCCGGGGTCAC 60.153 63.158 23.50 6.94 0.00 3.67
176 177 1.614241 CGATTCTTCCCGGGGTCACT 61.614 60.000 23.50 2.58 0.00 3.41
177 178 0.618981 GATTCTTCCCGGGGTCACTT 59.381 55.000 23.50 0.90 0.00 3.16
178 179 0.328258 ATTCTTCCCGGGGTCACTTG 59.672 55.000 23.50 3.32 0.00 3.16
179 180 1.057851 TTCTTCCCGGGGTCACTTGT 61.058 55.000 23.50 0.00 0.00 3.16
180 181 1.057851 TCTTCCCGGGGTCACTTGTT 61.058 55.000 23.50 0.00 0.00 2.83
181 182 0.605589 CTTCCCGGGGTCACTTGTTC 60.606 60.000 23.50 0.00 0.00 3.18
182 183 1.057851 TTCCCGGGGTCACTTGTTCT 61.058 55.000 23.50 0.00 0.00 3.01
183 184 1.057851 TCCCGGGGTCACTTGTTCTT 61.058 55.000 23.50 0.00 0.00 2.52
184 185 0.605589 CCCGGGGTCACTTGTTCTTC 60.606 60.000 14.71 0.00 0.00 2.87
185 186 0.107831 CCGGGGTCACTTGTTCTTCA 59.892 55.000 0.00 0.00 0.00 3.02
186 187 1.226746 CGGGGTCACTTGTTCTTCAC 58.773 55.000 0.00 0.00 0.00 3.18
187 188 1.202651 CGGGGTCACTTGTTCTTCACT 60.203 52.381 0.00 0.00 0.00 3.41
188 189 2.495084 GGGGTCACTTGTTCTTCACTC 58.505 52.381 0.00 0.00 0.00 3.51
221 222 6.186957 ACATATGCAATTGTAACTTCCTCCA 58.813 36.000 7.40 0.00 0.00 3.86
268 269 7.557358 AGGTACAAGATTGATGATTGCAATACA 59.443 33.333 12.97 12.41 36.19 2.29
280 281 1.885887 TGCAATACAAGTTGTGGCTCC 59.114 47.619 18.90 4.02 0.00 4.70
314 315 2.311462 CTCGGATTTGAGCGATCTACG 58.689 52.381 0.90 0.00 45.66 3.51
363 364 0.112412 GGCCCAAAGAAGGAGGTTGA 59.888 55.000 0.00 0.00 0.00 3.18
364 365 1.272704 GGCCCAAAGAAGGAGGTTGAT 60.273 52.381 0.00 0.00 0.00 2.57
377 378 5.690865 AGGAGGTTGATAGTTTGTTGACAA 58.309 37.500 0.00 0.00 0.00 3.18
419 420 0.463833 GGTGTCCATCGTGGGATTCC 60.464 60.000 0.00 0.00 39.62 3.01
439 440 2.416431 CCGAGGACTGGGTAAAACTACG 60.416 54.545 0.00 0.00 0.00 3.51
465 466 7.148340 GCTTGCTAATCAGGTGTATAATGATCC 60.148 40.741 0.00 0.00 32.59 3.36
475 476 4.278419 GTGTATAATGATCCCAAAGGGCAC 59.722 45.833 0.00 0.00 43.94 5.01
508 509 6.998968 AAGGCATTTATTTCTGTCTCTCAG 57.001 37.500 0.00 0.00 44.85 3.35
564 583 6.721318 TGAGACTAAAGCTTGGGATAAATGT 58.279 36.000 0.00 0.00 0.00 2.71
568 587 6.245408 ACTAAAGCTTGGGATAAATGTGTCA 58.755 36.000 0.00 0.00 0.00 3.58
581 600 8.345565 GGATAAATGTGTCATCTGGTATTTGTC 58.654 37.037 0.00 0.00 0.00 3.18
602 627 2.559668 CAGGTGCAAGACATCATTGGTT 59.440 45.455 0.00 0.00 0.00 3.67
621 646 6.243216 TGGTTAACTTAGAGAACACCTTGT 57.757 37.500 5.42 0.00 0.00 3.16
694 775 8.618677 GTTTAGCTTGATTTAAGTATACACCCC 58.381 37.037 5.50 0.00 38.70 4.95
907 5918 0.036105 AGTGCGATCATGAGCCAACA 60.036 50.000 5.18 0.00 0.00 3.33
969 6485 5.810587 AGTAGGTCGCTTGTATGTAACATTG 59.189 40.000 0.00 0.00 38.10 2.82
980 6496 9.236691 CTTGTATGTAACATTGGACAAATATGC 57.763 33.333 0.00 0.00 38.10 3.14
1012 6534 9.936759 TGATATCTGCAAATGTTTATATACGGA 57.063 29.630 3.98 0.00 0.00 4.69
1029 6578 1.593006 CGGAGTATTTCATGCGGTGTC 59.407 52.381 0.00 0.00 0.00 3.67
1099 6667 3.704566 ACCATATTGACCGCTCTCAGTAA 59.295 43.478 0.00 0.00 0.00 2.24
1101 6669 5.538813 ACCATATTGACCGCTCTCAGTAATA 59.461 40.000 0.00 0.00 0.00 0.98
1111 6679 5.450550 CCGCTCTCAGTAATAGATGTGTCAA 60.451 44.000 0.00 0.00 0.00 3.18
1114 6682 6.254589 GCTCTCAGTAATAGATGTGTCAACAC 59.745 42.308 6.33 6.33 46.59 3.32
1167 6736 5.472148 TGGCAATGATCTGTTTTGATGAAC 58.528 37.500 0.00 0.00 0.00 3.18
1227 6796 4.374702 CACGCCACGCAAGCTGTC 62.375 66.667 0.00 0.00 45.62 3.51
1303 6872 0.502275 CATTTGCGTGGCGTGTTTTC 59.498 50.000 0.00 0.00 0.00 2.29
1557 7198 5.005740 TGAGCACATCTACAAAATGAAGCT 58.994 37.500 7.25 7.25 39.68 3.74
1625 7268 3.077359 GGGTCTGAGAACAAATGTCCAG 58.923 50.000 0.00 0.00 0.00 3.86
1855 7498 1.005340 CTCTTCATCTCCGCACTTGC 58.995 55.000 0.00 0.00 37.78 4.01
1869 7512 2.608016 GCACTTGCTTCCTTTACCTTGC 60.608 50.000 0.00 0.00 38.21 4.01
2271 8085 1.940613 GTCATTGGTATGGTTCGGAGC 59.059 52.381 0.00 0.00 32.40 4.70
2337 8153 7.963981 TGTGTGTTATCTTTTGAAGATCGATC 58.036 34.615 17.91 17.91 44.79 3.69
2368 8199 1.832608 ACGTCTGGACCTCACTGCA 60.833 57.895 0.00 0.00 0.00 4.41
2378 8209 1.250328 CCTCACTGCAATCAGCCAAA 58.750 50.000 0.00 0.00 44.10 3.28
2408 8239 8.754991 TCAACTGAGGTATTTAAAGGTTTCAA 57.245 30.769 0.00 0.00 0.00 2.69
2474 8305 4.334203 TGCATTTGGATACGTTGGATGTAC 59.666 41.667 0.00 0.00 42.51 2.90
2512 8343 1.134995 TCAGACATAGAGCACTTGCCG 60.135 52.381 0.00 0.00 43.38 5.69
2559 8390 2.728013 TGTATGAGGGGATAGGGCTACT 59.272 50.000 0.00 0.00 0.00 2.57
2609 8440 2.095768 CGCACACTCGATGGTTTCAAAT 60.096 45.455 0.00 0.00 0.00 2.32
2678 8509 6.581712 ACTAATCTGAGGAATCTGAAGCTTC 58.418 40.000 19.89 19.89 0.00 3.86
2679 8510 5.432680 AATCTGAGGAATCTGAAGCTTCA 57.567 39.130 26.87 26.87 35.57 3.02
2682 8513 5.911752 TCTGAGGAATCTGAAGCTTCATAC 58.088 41.667 28.57 15.55 36.46 2.39
2734 8572 2.997485 AGGCGAAGTTTGATGCTTTC 57.003 45.000 0.00 0.00 0.00 2.62
2775 8613 3.627395 ACGCAACCTCAAATATCTCCA 57.373 42.857 0.00 0.00 0.00 3.86
2833 8674 1.556911 GGCTCAGTTTCAGATCCTCCA 59.443 52.381 0.00 0.00 0.00 3.86
2878 8719 3.842007 ATCAGCTGGAAGATCTTGAGG 57.158 47.619 14.00 3.38 34.07 3.86
2889 8730 6.676632 TGGAAGATCTTGAGGGTTCCTAAATA 59.323 38.462 14.00 0.00 38.02 1.40
2900 8741 5.012148 AGGGTTCCTAAATAGATCGGTGATG 59.988 44.000 0.00 0.00 28.47 3.07
2937 8778 3.395941 AGCCTGGAATTATCTGTTAGGGG 59.604 47.826 0.00 0.00 0.00 4.79
2952 8793 1.358152 AGGGGGACGAAAACTGATGA 58.642 50.000 0.00 0.00 0.00 2.92
3031 8872 1.705186 TGCCCTAAAGAAGAGGCTGTT 59.295 47.619 0.00 0.00 40.39 3.16
3077 8918 0.901827 TCTGGAGCGCCTTACATTCA 59.098 50.000 8.34 0.00 34.31 2.57
3088 8932 4.047822 GCCTTACATTCATCTCTGACGAG 58.952 47.826 0.00 0.00 38.67 4.18
3095 8939 2.248248 TCATCTCTGACGAGGGTGTTT 58.752 47.619 0.00 0.00 37.86 2.83
3106 8950 5.099042 ACGAGGGTGTTTTAGCATATCTT 57.901 39.130 0.00 0.00 0.00 2.40
3108 8952 5.116180 CGAGGGTGTTTTAGCATATCTTGA 58.884 41.667 0.00 0.00 0.00 3.02
3142 8986 1.870167 GCTATGCCCAAGCTACGAGAC 60.870 57.143 0.00 0.00 40.80 3.36
3161 9005 2.485814 GACCTCATTCTGCAAGTCAACC 59.514 50.000 0.00 0.00 33.76 3.77
3163 9007 2.886523 CCTCATTCTGCAAGTCAACCAA 59.113 45.455 0.00 0.00 33.76 3.67
3168 9012 1.064758 TCTGCAAGTCAACCAACCACT 60.065 47.619 0.00 0.00 33.76 4.00
3197 9041 2.268920 CTACACCAGCCGGCATGT 59.731 61.111 31.54 28.97 34.57 3.21
3198 9042 1.377202 CTACACCAGCCGGCATGTT 60.377 57.895 31.54 16.47 34.57 2.71
3234 9078 4.479619 CTCCAGCAAATCAGTTTTACTGC 58.520 43.478 1.98 0.00 45.54 4.40
3237 9081 4.624024 CCAGCAAATCAGTTTTACTGCATG 59.376 41.667 1.98 0.00 45.54 4.06
3257 9101 0.523072 CGGCAACCACAAGGAATCTG 59.477 55.000 0.00 0.00 38.69 2.90
3277 9121 2.607635 TGTTGAACAAGTGAAGCTCGAC 59.392 45.455 0.00 0.00 0.00 4.20
3278 9122 2.595124 TGAACAAGTGAAGCTCGACA 57.405 45.000 0.00 0.00 0.00 4.35
3350 9597 7.133133 TCCTTGGATATTAACTGTTACTCCC 57.867 40.000 15.18 9.68 0.00 4.30
3352 9599 4.952460 TGGATATTAACTGTTACTCCCGC 58.048 43.478 15.18 0.72 0.00 6.13
3353 9600 4.406326 TGGATATTAACTGTTACTCCCGCA 59.594 41.667 15.18 0.00 0.00 5.69
3354 9601 5.104859 TGGATATTAACTGTTACTCCCGCAA 60.105 40.000 15.18 0.00 0.00 4.85
3364 9611 2.270352 ACTCCCGCAAATGAGTGAAA 57.730 45.000 0.00 0.00 40.23 2.69
3389 9636 2.421739 GGACCACGTGCACTGAGT 59.578 61.111 16.19 8.75 0.00 3.41
3451 9711 8.486210 TCATTTCCTCTGCTATATGTTGTACTT 58.514 33.333 0.00 0.00 0.00 2.24
3452 9712 8.768955 CATTTCCTCTGCTATATGTTGTACTTC 58.231 37.037 0.00 0.00 0.00 3.01
3459 9720 8.869897 TCTGCTATATGTTGTACTTCTTTTTCG 58.130 33.333 0.00 0.00 0.00 3.46
3482 9746 7.974675 TCGATCATTTCTCTGGTGTTTAATTC 58.025 34.615 0.00 0.00 0.00 2.17
3498 9770 7.646526 GTGTTTAATTCCTTGAGTGTTGTTACC 59.353 37.037 0.00 0.00 0.00 2.85
3500 9772 8.357402 GTTTAATTCCTTGAGTGTTGTTACCAT 58.643 33.333 0.00 0.00 0.00 3.55
3501 9773 5.964958 ATTCCTTGAGTGTTGTTACCATG 57.035 39.130 0.00 0.00 0.00 3.66
3502 9774 3.750371 TCCTTGAGTGTTGTTACCATGG 58.250 45.455 11.19 11.19 0.00 3.66
3503 9775 2.819608 CCTTGAGTGTTGTTACCATGGG 59.180 50.000 18.09 0.00 0.00 4.00
3506 9778 4.919774 TGAGTGTTGTTACCATGGGTAT 57.080 40.909 18.09 0.00 38.05 2.73
3534 9886 5.539574 TGAAACCTCAACCATTCATTCATGT 59.460 36.000 0.00 0.00 0.00 3.21
3552 9904 4.589216 ATGTTTTCCACATGTTCCTGTG 57.411 40.909 0.00 0.00 45.12 3.66
3567 9919 4.927267 TCCTGTGTATCCAGAAAACCAT 57.073 40.909 0.00 0.00 34.23 3.55
3578 9930 5.964758 TCCAGAAAACCATGTGATTAATGC 58.035 37.500 0.00 0.00 0.00 3.56
3581 9933 2.869233 AACCATGTGATTAATGCGGC 57.131 45.000 0.00 0.00 0.00 6.53
3607 9959 0.111446 TGGTTTGAGAAATGGCCGGA 59.889 50.000 5.05 0.00 0.00 5.14
3635 9987 7.191593 ACGGTTAGTTTATTATTCCCTCTGT 57.808 36.000 0.00 0.00 0.00 3.41
3636 9988 7.270779 ACGGTTAGTTTATTATTCCCTCTGTC 58.729 38.462 0.00 0.00 0.00 3.51
3637 9989 6.704937 CGGTTAGTTTATTATTCCCTCTGTCC 59.295 42.308 0.00 0.00 0.00 4.02
3638 9990 6.996879 GGTTAGTTTATTATTCCCTCTGTCCC 59.003 42.308 0.00 0.00 0.00 4.46
3640 9992 6.652205 AGTTTATTATTCCCTCTGTCCCAA 57.348 37.500 0.00 0.00 0.00 4.12
3641 9993 7.039722 AGTTTATTATTCCCTCTGTCCCAAA 57.960 36.000 0.00 0.00 0.00 3.28
3642 9994 7.475299 AGTTTATTATTCCCTCTGTCCCAAAA 58.525 34.615 0.00 0.00 0.00 2.44
3644 9996 9.416284 GTTTATTATTCCCTCTGTCCCAAAATA 57.584 33.333 0.00 0.00 0.00 1.40
3649 10001 6.901615 TTCCCTCTGTCCCAAAATATAAGA 57.098 37.500 0.00 0.00 0.00 2.10
3650 10002 6.901615 TCCCTCTGTCCCAAAATATAAGAA 57.098 37.500 0.00 0.00 0.00 2.52
3651 10003 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
3652 10004 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
3653 10005 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
3654 10006 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
3655 10007 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
3656 10008 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
3657 10009 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
3702 10054 9.635404 AAAAATGTTCTTATATTATGGGACGGA 57.365 29.630 0.00 0.00 0.00 4.69
3703 10055 8.848474 AAATGTTCTTATATTATGGGACGGAG 57.152 34.615 0.00 0.00 0.00 4.63
3704 10056 6.354794 TGTTCTTATATTATGGGACGGAGG 57.645 41.667 0.00 0.00 0.00 4.30
3705 10057 5.247564 TGTTCTTATATTATGGGACGGAGGG 59.752 44.000 0.00 0.00 0.00 4.30
3706 10058 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3707 10059 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3708 10060 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3710 10062 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
3711 10063 0.928505 TATGGGACGGAGGGAGTACA 59.071 55.000 0.00 0.00 0.00 2.90
3712 10064 0.686769 ATGGGACGGAGGGAGTACAC 60.687 60.000 0.00 0.00 0.00 2.90
3713 10065 1.304713 GGGACGGAGGGAGTACACA 60.305 63.158 0.00 0.00 0.00 3.72
3714 10066 0.901580 GGGACGGAGGGAGTACACAA 60.902 60.000 0.00 0.00 0.00 3.33
3715 10067 0.531200 GGACGGAGGGAGTACACAAG 59.469 60.000 0.00 0.00 0.00 3.16
3716 10068 0.108756 GACGGAGGGAGTACACAAGC 60.109 60.000 0.00 0.00 0.00 4.01
3717 10069 0.542232 ACGGAGGGAGTACACAAGCT 60.542 55.000 0.00 0.00 0.00 3.74
3718 10070 1.272313 ACGGAGGGAGTACACAAGCTA 60.272 52.381 0.00 0.00 0.00 3.32
3719 10071 2.032620 CGGAGGGAGTACACAAGCTAT 58.967 52.381 0.00 0.00 0.00 2.97
3720 10072 3.220110 CGGAGGGAGTACACAAGCTATA 58.780 50.000 0.00 0.00 0.00 1.31
3721 10073 3.253677 CGGAGGGAGTACACAAGCTATAG 59.746 52.174 0.00 0.00 0.00 1.31
3724 10076 5.241285 GGAGGGAGTACACAAGCTATAGTAC 59.759 48.000 12.18 12.18 37.65 2.73
3731 10280 7.556844 AGTACACAAGCTATAGTACTTTGCAT 58.443 34.615 15.36 0.00 43.20 3.96
3763 10312 3.819564 AAACTGGTCTTTGAAAAGCCC 57.180 42.857 11.32 5.21 34.72 5.19
3764 10313 1.704641 ACTGGTCTTTGAAAAGCCCC 58.295 50.000 0.70 3.20 33.22 5.80
3767 10316 2.036346 CTGGTCTTTGAAAAGCCCCAAG 59.964 50.000 12.28 0.00 36.77 3.61
3768 10317 2.039418 GGTCTTTGAAAAGCCCCAAGT 58.961 47.619 0.00 0.00 35.99 3.16
3770 10319 3.639561 GGTCTTTGAAAAGCCCCAAGTTA 59.360 43.478 0.00 0.00 35.99 2.24
3772 10321 5.221641 GGTCTTTGAAAAGCCCCAAGTTAAT 60.222 40.000 0.00 0.00 35.99 1.40
3778 10327 6.836242 TGAAAAGCCCCAAGTTAATTTTGAT 58.164 32.000 4.71 0.00 0.00 2.57
3816 10365 9.801873 TTCAAATCTTAGTTTCTGGTTTTTCTG 57.198 29.630 0.00 0.00 0.00 3.02
3852 10401 6.481954 GCTAAAGCAGTAAAGCTAACAAGA 57.518 37.500 0.00 0.00 45.89 3.02
3854 10403 6.963805 GCTAAAGCAGTAAAGCTAACAAGATG 59.036 38.462 0.00 0.00 45.89 2.90
3856 10405 4.326826 AGCAGTAAAGCTAACAAGATGCA 58.673 39.130 11.31 0.00 44.50 3.96
3857 10406 4.946157 AGCAGTAAAGCTAACAAGATGCAT 59.054 37.500 0.00 0.00 44.50 3.96
3858 10407 5.032863 GCAGTAAAGCTAACAAGATGCATG 58.967 41.667 2.46 0.00 0.00 4.06
3859 10408 5.575957 CAGTAAAGCTAACAAGATGCATGG 58.424 41.667 2.46 0.00 0.00 3.66
3860 10409 5.124457 CAGTAAAGCTAACAAGATGCATGGT 59.876 40.000 2.46 0.00 0.00 3.55
3861 10410 5.711976 AGTAAAGCTAACAAGATGCATGGTT 59.288 36.000 2.46 8.54 0.00 3.67
3862 10411 6.884295 AGTAAAGCTAACAAGATGCATGGTTA 59.116 34.615 2.46 9.27 0.00 2.85
3863 10412 5.567138 AAGCTAACAAGATGCATGGTTAC 57.433 39.130 2.46 5.68 0.00 2.50
3888 10437 1.785951 CTGCACACTGATGTCTGCG 59.214 57.895 0.00 0.00 40.28 5.18
4025 10574 3.128764 TGAGTGACGAGTAGCGATGAAAT 59.871 43.478 0.00 0.00 44.57 2.17
4026 10575 4.106197 GAGTGACGAGTAGCGATGAAATT 58.894 43.478 0.00 0.00 44.57 1.82
4028 10577 4.929808 AGTGACGAGTAGCGATGAAATTTT 59.070 37.500 0.00 0.00 44.57 1.82
4041 10590 9.601217 AGCGATGAAATTTTAGTACTGATTACT 57.399 29.630 5.39 0.00 43.89 2.24
4048 10597 8.507524 AATTTTAGTACTGATTACTTGAGGCC 57.492 34.615 5.39 0.00 41.60 5.19
4054 10603 7.299134 AGTACTGATTACTTGAGGCCTAGTAT 58.701 38.462 14.82 6.75 37.85 2.12
4074 10623 1.135139 TCTAGCGTCTTCCATGAGTGC 59.865 52.381 0.00 0.00 0.00 4.40
4083 10632 2.756840 TCCATGAGTGCTCTCTGTTG 57.243 50.000 16.23 10.86 40.98 3.33
4153 10702 0.031994 CAACGCAAAACCAGGGGAAG 59.968 55.000 0.00 0.00 0.00 3.46
4158 10707 1.351076 CAAAACCAGGGGAAGCCATT 58.649 50.000 0.00 0.00 0.00 3.16
4159 10708 1.002315 CAAAACCAGGGGAAGCCATTG 59.998 52.381 0.00 0.00 0.00 2.82
4160 10709 0.545071 AAACCAGGGGAAGCCATTGG 60.545 55.000 0.00 0.00 35.54 3.16
4161 10710 1.442886 AACCAGGGGAAGCCATTGGA 61.443 55.000 6.95 0.00 34.20 3.53
4199 10749 1.205064 CCGTTGCAACTGCTCTTCG 59.795 57.895 26.09 11.05 42.66 3.79
4213 10763 2.745884 TTCGGGCGGTGAATGCAG 60.746 61.111 0.00 0.00 0.00 4.41
4244 10794 2.527951 ATCGAGAGTGTTGGCCAGGC 62.528 60.000 5.11 1.26 0.00 4.85
4281 10832 1.145803 GGTGGCGTGTTTCTGAGTAC 58.854 55.000 0.00 0.00 0.00 2.73
4286 10837 1.337821 CGTGTTTCTGAGTACGGCTC 58.662 55.000 2.79 2.79 44.36 4.70
4350 10917 3.700970 TCGATGTTGCCGCCCTCA 61.701 61.111 0.00 0.00 0.00 3.86
4365 10983 2.944094 GCCCTCACCGTCCATAATGTTT 60.944 50.000 0.00 0.00 0.00 2.83
4368 10986 3.756434 CCTCACCGTCCATAATGTTTGTT 59.244 43.478 0.00 0.00 0.00 2.83
4371 10989 3.086282 ACCGTCCATAATGTTTGTTCCC 58.914 45.455 0.00 0.00 0.00 3.97
4425 11043 1.516386 GCATGTGACCGTCGACGAT 60.516 57.895 37.65 24.77 43.02 3.73
4464 11082 2.328099 CGGCCCACTGCTCAAACTC 61.328 63.158 0.00 0.00 40.92 3.01
4538 11156 3.532896 ACGGCGAGTGAATGAACAT 57.467 47.368 16.62 0.00 0.00 2.71
4541 11159 1.935873 CGGCGAGTGAATGAACATGAT 59.064 47.619 0.00 0.00 0.00 2.45
4543 11161 2.938451 GGCGAGTGAATGAACATGATGA 59.062 45.455 0.00 0.00 0.00 2.92
4548 11166 5.469084 CGAGTGAATGAACATGATGATCCAT 59.531 40.000 0.00 0.00 0.00 3.41
4559 11177 4.412796 TGATGATCCATGGAGTCAGTTC 57.587 45.455 21.33 16.90 0.00 3.01
4562 11180 0.833287 ATCCATGGAGTCAGTTCCCG 59.167 55.000 21.33 0.00 36.35 5.14
4564 11182 1.264749 CCATGGAGTCAGTTCCCGGA 61.265 60.000 5.56 0.00 36.35 5.14
4565 11183 0.833287 CATGGAGTCAGTTCCCGGAT 59.167 55.000 0.73 0.00 36.35 4.18
4566 11184 1.123928 ATGGAGTCAGTTCCCGGATC 58.876 55.000 0.73 0.00 36.35 3.36
4567 11185 1.320344 TGGAGTCAGTTCCCGGATCG 61.320 60.000 0.73 0.00 36.35 3.69
4569 11187 2.202892 GTCAGTTCCCGGATCGGC 60.203 66.667 0.73 0.00 46.86 5.54
4570 11188 3.467226 TCAGTTCCCGGATCGGCC 61.467 66.667 0.73 0.00 46.86 6.13
4602 11220 1.303074 CTGCAGCCACATCCACTGT 60.303 57.895 0.00 0.00 39.20 3.55
4641 11259 1.747206 GCCGAGTAGGATGCCACAAAT 60.747 52.381 0.00 0.00 45.00 2.32
4645 11263 3.804325 CGAGTAGGATGCCACAAATACAG 59.196 47.826 0.00 0.00 0.00 2.74
4647 11265 4.517285 AGTAGGATGCCACAAATACAGTG 58.483 43.478 0.00 0.00 36.76 3.66
4738 11362 8.742554 AAAATACATACAGCAACTTTTAGCAC 57.257 30.769 0.00 0.00 0.00 4.40
4787 11411 1.275657 CACGCGCATACCGATTTCC 59.724 57.895 5.73 0.00 40.02 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.121811 TGTACATGTACATGCATGCACATA 58.878 37.500 34.36 22.68 43.91 2.29
13 14 9.882996 CATGTTGATATTTGGATGTACATGTAC 57.117 33.333 25.99 25.99 37.75 2.90
14 15 9.065798 CCATGTTGATATTTGGATGTACATGTA 57.934 33.333 14.43 0.08 39.75 2.29
15 16 7.779326 TCCATGTTGATATTTGGATGTACATGT 59.221 33.333 14.43 2.69 39.75 3.21
16 17 8.077991 GTCCATGTTGATATTTGGATGTACATG 58.922 37.037 14.43 0.00 40.22 3.21
17 18 7.041167 CGTCCATGTTGATATTTGGATGTACAT 60.041 37.037 8.43 8.43 40.22 2.29
18 19 6.259829 CGTCCATGTTGATATTTGGATGTACA 59.740 38.462 0.00 0.00 40.22 2.90
19 20 6.658831 CGTCCATGTTGATATTTGGATGTAC 58.341 40.000 0.00 0.00 40.22 2.90
20 21 6.859420 CGTCCATGTTGATATTTGGATGTA 57.141 37.500 0.00 0.00 40.22 2.29
21 22 5.756195 CGTCCATGTTGATATTTGGATGT 57.244 39.130 0.00 0.00 40.22 3.06
22 23 5.066375 ACACGTCCATGTTGATATTTGGATG 59.934 40.000 8.16 8.16 46.27 3.51
23 24 5.192927 ACACGTCCATGTTGATATTTGGAT 58.807 37.500 0.00 0.00 40.22 3.41
24 25 4.584874 ACACGTCCATGTTGATATTTGGA 58.415 39.130 0.00 0.00 35.93 3.53
25 26 4.963276 ACACGTCCATGTTGATATTTGG 57.037 40.909 0.00 0.00 0.00 3.28
26 27 7.072177 AGTTACACGTCCATGTTGATATTTG 57.928 36.000 0.00 0.00 33.85 2.32
27 28 7.526608 CAAGTTACACGTCCATGTTGATATTT 58.473 34.615 0.00 0.00 33.85 1.40
28 29 6.403200 GCAAGTTACACGTCCATGTTGATATT 60.403 38.462 0.00 0.00 33.85 1.28
29 30 5.064707 GCAAGTTACACGTCCATGTTGATAT 59.935 40.000 0.00 0.00 33.85 1.63
30 31 4.390603 GCAAGTTACACGTCCATGTTGATA 59.609 41.667 0.00 0.00 33.85 2.15
31 32 3.188460 GCAAGTTACACGTCCATGTTGAT 59.812 43.478 0.00 0.00 33.85 2.57
32 33 2.546368 GCAAGTTACACGTCCATGTTGA 59.454 45.455 0.00 0.00 33.85 3.18
33 34 2.289274 TGCAAGTTACACGTCCATGTTG 59.711 45.455 0.00 0.00 33.85 3.33
34 35 2.289547 GTGCAAGTTACACGTCCATGTT 59.710 45.455 0.00 0.00 33.85 2.71
35 36 1.871039 GTGCAAGTTACACGTCCATGT 59.129 47.619 0.00 0.00 36.56 3.21
36 37 2.143122 AGTGCAAGTTACACGTCCATG 58.857 47.619 0.53 0.00 42.94 3.66
37 38 2.543777 AGTGCAAGTTACACGTCCAT 57.456 45.000 0.53 0.00 42.94 3.41
38 39 3.455990 TTAGTGCAAGTTACACGTCCA 57.544 42.857 0.53 0.00 42.94 4.02
39 40 4.799419 TTTTAGTGCAAGTTACACGTCC 57.201 40.909 0.53 0.00 42.94 4.79
68 69 9.453572 TCAGAAATCTAAGTCTACATGCAATTT 57.546 29.630 0.00 0.00 0.00 1.82
69 70 9.453572 TTCAGAAATCTAAGTCTACATGCAATT 57.546 29.630 0.00 0.00 0.00 2.32
70 71 9.453572 TTTCAGAAATCTAAGTCTACATGCAAT 57.546 29.630 0.00 0.00 0.00 3.56
71 72 8.846943 TTTCAGAAATCTAAGTCTACATGCAA 57.153 30.769 0.00 0.00 0.00 4.08
72 73 7.550551 CCTTTCAGAAATCTAAGTCTACATGCA 59.449 37.037 0.00 0.00 0.00 3.96
73 74 7.766278 TCCTTTCAGAAATCTAAGTCTACATGC 59.234 37.037 0.00 0.00 0.00 4.06
74 75 9.658799 TTCCTTTCAGAAATCTAAGTCTACATG 57.341 33.333 0.00 0.00 0.00 3.21
75 76 9.883142 CTTCCTTTCAGAAATCTAAGTCTACAT 57.117 33.333 0.00 0.00 0.00 2.29
76 77 9.090103 TCTTCCTTTCAGAAATCTAAGTCTACA 57.910 33.333 0.00 0.00 0.00 2.74
77 78 9.930693 TTCTTCCTTTCAGAAATCTAAGTCTAC 57.069 33.333 0.00 0.00 0.00 2.59
79 80 7.606073 GCTTCTTCCTTTCAGAAATCTAAGTCT 59.394 37.037 0.00 0.00 29.74 3.24
80 81 7.389053 TGCTTCTTCCTTTCAGAAATCTAAGTC 59.611 37.037 0.00 0.00 29.74 3.01
81 82 7.174080 GTGCTTCTTCCTTTCAGAAATCTAAGT 59.826 37.037 0.00 0.00 29.74 2.24
82 83 7.173907 TGTGCTTCTTCCTTTCAGAAATCTAAG 59.826 37.037 0.00 1.59 29.74 2.18
83 84 6.998074 TGTGCTTCTTCCTTTCAGAAATCTAA 59.002 34.615 0.00 0.00 29.74 2.10
84 85 6.533730 TGTGCTTCTTCCTTTCAGAAATCTA 58.466 36.000 0.00 0.00 29.74 1.98
85 86 5.380043 TGTGCTTCTTCCTTTCAGAAATCT 58.620 37.500 0.00 0.00 29.74 2.40
86 87 5.695851 TGTGCTTCTTCCTTTCAGAAATC 57.304 39.130 0.00 0.00 29.74 2.17
87 88 6.469782 TTTGTGCTTCTTCCTTTCAGAAAT 57.530 33.333 0.00 0.00 29.74 2.17
88 89 5.913137 TTTGTGCTTCTTCCTTTCAGAAA 57.087 34.783 0.00 0.00 29.74 2.52
89 90 5.913137 TTTTGTGCTTCTTCCTTTCAGAA 57.087 34.783 0.00 0.00 0.00 3.02
90 91 5.184864 TGTTTTTGTGCTTCTTCCTTTCAGA 59.815 36.000 0.00 0.00 0.00 3.27
91 92 5.289434 GTGTTTTTGTGCTTCTTCCTTTCAG 59.711 40.000 0.00 0.00 0.00 3.02
92 93 5.167845 GTGTTTTTGTGCTTCTTCCTTTCA 58.832 37.500 0.00 0.00 0.00 2.69
93 94 5.167845 TGTGTTTTTGTGCTTCTTCCTTTC 58.832 37.500 0.00 0.00 0.00 2.62
94 95 5.146010 TGTGTTTTTGTGCTTCTTCCTTT 57.854 34.783 0.00 0.00 0.00 3.11
95 96 4.799564 TGTGTTTTTGTGCTTCTTCCTT 57.200 36.364 0.00 0.00 0.00 3.36
96 97 4.402155 TGATGTGTTTTTGTGCTTCTTCCT 59.598 37.500 0.00 0.00 0.00 3.36
97 98 4.681744 TGATGTGTTTTTGTGCTTCTTCC 58.318 39.130 0.00 0.00 0.00 3.46
98 99 6.090628 TGTTTGATGTGTTTTTGTGCTTCTTC 59.909 34.615 0.00 0.00 0.00 2.87
99 100 5.931146 TGTTTGATGTGTTTTTGTGCTTCTT 59.069 32.000 0.00 0.00 0.00 2.52
100 101 5.477510 TGTTTGATGTGTTTTTGTGCTTCT 58.522 33.333 0.00 0.00 0.00 2.85
101 102 5.348451 ACTGTTTGATGTGTTTTTGTGCTTC 59.652 36.000 0.00 0.00 0.00 3.86
102 103 5.237048 ACTGTTTGATGTGTTTTTGTGCTT 58.763 33.333 0.00 0.00 0.00 3.91
103 104 4.819769 ACTGTTTGATGTGTTTTTGTGCT 58.180 34.783 0.00 0.00 0.00 4.40
104 105 5.348451 AGAACTGTTTGATGTGTTTTTGTGC 59.652 36.000 0.00 0.00 0.00 4.57
105 106 6.670452 GCAGAACTGTTTGATGTGTTTTTGTG 60.670 38.462 0.00 0.00 0.00 3.33
106 107 5.348451 GCAGAACTGTTTGATGTGTTTTTGT 59.652 36.000 0.00 0.00 0.00 2.83
107 108 5.348179 TGCAGAACTGTTTGATGTGTTTTTG 59.652 36.000 0.00 0.00 0.00 2.44
108 109 5.477510 TGCAGAACTGTTTGATGTGTTTTT 58.522 33.333 0.00 0.00 0.00 1.94
109 110 5.070770 TGCAGAACTGTTTGATGTGTTTT 57.929 34.783 0.00 0.00 0.00 2.43
110 111 4.717233 TGCAGAACTGTTTGATGTGTTT 57.283 36.364 0.00 0.00 0.00 2.83
111 112 4.924305 ATGCAGAACTGTTTGATGTGTT 57.076 36.364 0.00 0.00 0.00 3.32
112 113 4.338964 TCAATGCAGAACTGTTTGATGTGT 59.661 37.500 13.78 0.00 33.32 3.72
113 114 4.862350 TCAATGCAGAACTGTTTGATGTG 58.138 39.130 13.78 0.00 33.32 3.21
114 115 4.022589 CCTCAATGCAGAACTGTTTGATGT 60.023 41.667 16.27 0.00 35.72 3.06
115 116 4.482386 CCTCAATGCAGAACTGTTTGATG 58.518 43.478 16.27 12.43 35.72 3.07
116 117 3.057033 GCCTCAATGCAGAACTGTTTGAT 60.057 43.478 16.27 0.23 35.72 2.57
117 118 2.294233 GCCTCAATGCAGAACTGTTTGA 59.706 45.455 15.59 15.59 35.32 2.69
118 119 2.034939 TGCCTCAATGCAGAACTGTTTG 59.965 45.455 0.00 8.05 36.04 2.93
119 120 2.309613 TGCCTCAATGCAGAACTGTTT 58.690 42.857 0.00 0.00 36.04 2.83
120 121 1.985473 TGCCTCAATGCAGAACTGTT 58.015 45.000 0.00 0.00 36.04 3.16
121 122 1.884579 CTTGCCTCAATGCAGAACTGT 59.115 47.619 0.00 0.00 43.21 3.55
122 123 1.201647 CCTTGCCTCAATGCAGAACTG 59.798 52.381 0.00 0.00 43.21 3.16
123 124 1.074405 TCCTTGCCTCAATGCAGAACT 59.926 47.619 0.00 0.00 43.21 3.01
124 125 1.200948 GTCCTTGCCTCAATGCAGAAC 59.799 52.381 0.00 0.00 43.21 3.01
125 126 1.538047 GTCCTTGCCTCAATGCAGAA 58.462 50.000 0.00 0.00 43.21 3.02
126 127 0.322816 GGTCCTTGCCTCAATGCAGA 60.323 55.000 0.00 0.00 43.21 4.26
127 128 0.323178 AGGTCCTTGCCTCAATGCAG 60.323 55.000 0.00 0.00 43.21 4.41
128 129 0.112995 AAGGTCCTTGCCTCAATGCA 59.887 50.000 2.38 0.00 38.03 3.96
129 130 0.813821 GAAGGTCCTTGCCTCAATGC 59.186 55.000 9.46 0.00 38.03 3.56
130 131 2.503895 AGAAGGTCCTTGCCTCAATG 57.496 50.000 9.46 0.00 38.03 2.82
131 132 3.525199 ACATAGAAGGTCCTTGCCTCAAT 59.475 43.478 9.46 0.00 38.03 2.57
132 133 2.912956 ACATAGAAGGTCCTTGCCTCAA 59.087 45.455 9.46 0.00 38.03 3.02
133 134 2.501723 GACATAGAAGGTCCTTGCCTCA 59.498 50.000 9.46 0.00 38.03 3.86
134 135 3.186702 GACATAGAAGGTCCTTGCCTC 57.813 52.381 9.46 0.00 38.03 4.70
142 143 2.966516 AGAATCGGGGACATAGAAGGTC 59.033 50.000 0.00 0.00 34.52 3.85
143 144 3.047695 AGAATCGGGGACATAGAAGGT 57.952 47.619 0.00 0.00 0.00 3.50
144 145 3.244249 GGAAGAATCGGGGACATAGAAGG 60.244 52.174 0.00 0.00 0.00 3.46
145 146 3.244249 GGGAAGAATCGGGGACATAGAAG 60.244 52.174 0.00 0.00 0.00 2.85
146 147 2.704065 GGGAAGAATCGGGGACATAGAA 59.296 50.000 0.00 0.00 0.00 2.10
147 148 2.326428 GGGAAGAATCGGGGACATAGA 58.674 52.381 0.00 0.00 0.00 1.98
148 149 1.000955 CGGGAAGAATCGGGGACATAG 59.999 57.143 0.00 0.00 0.00 2.23
149 150 1.045407 CGGGAAGAATCGGGGACATA 58.955 55.000 0.00 0.00 0.00 2.29
150 151 1.696097 CCGGGAAGAATCGGGGACAT 61.696 60.000 0.00 0.00 42.32 3.06
151 152 2.363975 CCGGGAAGAATCGGGGACA 61.364 63.158 0.00 0.00 42.32 4.02
152 153 2.504519 CCGGGAAGAATCGGGGAC 59.495 66.667 0.00 0.00 42.32 4.46
156 157 2.363975 TGACCCCGGGAAGAATCGG 61.364 63.158 26.32 4.48 45.29 4.18
157 158 1.153429 GTGACCCCGGGAAGAATCG 60.153 63.158 26.32 5.39 0.00 3.34
158 159 0.618981 AAGTGACCCCGGGAAGAATC 59.381 55.000 26.32 11.77 0.00 2.52
159 160 0.328258 CAAGTGACCCCGGGAAGAAT 59.672 55.000 26.32 0.94 0.00 2.40
160 161 1.057851 ACAAGTGACCCCGGGAAGAA 61.058 55.000 26.32 0.56 0.00 2.52
161 162 1.057851 AACAAGTGACCCCGGGAAGA 61.058 55.000 26.32 0.52 0.00 2.87
162 163 0.605589 GAACAAGTGACCCCGGGAAG 60.606 60.000 26.32 9.05 0.00 3.46
163 164 1.057851 AGAACAAGTGACCCCGGGAA 61.058 55.000 26.32 3.73 0.00 3.97
164 165 1.057851 AAGAACAAGTGACCCCGGGA 61.058 55.000 26.32 0.00 0.00 5.14
165 166 0.605589 GAAGAACAAGTGACCCCGGG 60.606 60.000 15.80 15.80 0.00 5.73
166 167 0.107831 TGAAGAACAAGTGACCCCGG 59.892 55.000 0.00 0.00 0.00 5.73
167 168 1.202651 AGTGAAGAACAAGTGACCCCG 60.203 52.381 0.00 0.00 0.00 5.73
168 169 2.104963 AGAGTGAAGAACAAGTGACCCC 59.895 50.000 0.00 0.00 0.00 4.95
169 170 3.134458 CAGAGTGAAGAACAAGTGACCC 58.866 50.000 0.00 0.00 0.00 4.46
170 171 3.557595 CACAGAGTGAAGAACAAGTGACC 59.442 47.826 0.00 0.00 35.23 4.02
171 172 4.433615 TCACAGAGTGAAGAACAAGTGAC 58.566 43.478 0.00 0.00 39.78 3.67
172 173 4.402474 TCTCACAGAGTGAAGAACAAGTGA 59.598 41.667 1.19 0.00 42.26 3.41
173 174 4.686972 TCTCACAGAGTGAAGAACAAGTG 58.313 43.478 1.19 0.00 42.26 3.16
174 175 5.344743 TTCTCACAGAGTGAAGAACAAGT 57.655 39.130 1.19 0.00 42.26 3.16
175 176 5.582269 TGTTTCTCACAGAGTGAAGAACAAG 59.418 40.000 17.89 1.59 42.26 3.16
176 177 5.487433 TGTTTCTCACAGAGTGAAGAACAA 58.513 37.500 17.89 8.24 42.26 2.83
177 178 5.084818 TGTTTCTCACAGAGTGAAGAACA 57.915 39.130 16.97 16.97 42.26 3.18
178 179 7.623089 GCATATGTTTCTCACAGAGTGAAGAAC 60.623 40.741 4.29 13.74 42.26 3.01
179 180 6.369890 GCATATGTTTCTCACAGAGTGAAGAA 59.630 38.462 4.29 5.03 42.26 2.52
180 181 5.871524 GCATATGTTTCTCACAGAGTGAAGA 59.128 40.000 4.29 0.00 42.26 2.87
181 182 5.640783 TGCATATGTTTCTCACAGAGTGAAG 59.359 40.000 4.29 0.00 42.26 3.02
182 183 5.550290 TGCATATGTTTCTCACAGAGTGAA 58.450 37.500 4.29 0.00 42.26 3.18
183 184 5.151297 TGCATATGTTTCTCACAGAGTGA 57.849 39.130 4.29 0.00 39.40 3.41
184 185 5.868043 TTGCATATGTTTCTCACAGAGTG 57.132 39.130 4.29 0.00 39.40 3.51
185 186 6.432162 ACAATTGCATATGTTTCTCACAGAGT 59.568 34.615 5.05 0.00 39.40 3.24
186 187 6.849502 ACAATTGCATATGTTTCTCACAGAG 58.150 36.000 5.05 0.00 39.40 3.35
187 188 6.822667 ACAATTGCATATGTTTCTCACAGA 57.177 33.333 5.05 0.00 39.40 3.41
188 189 8.239314 AGTTACAATTGCATATGTTTCTCACAG 58.761 33.333 5.05 0.00 39.40 3.66
221 222 9.125026 GTACCTGGAATTGATTAGAATGTCAAT 57.875 33.333 0.00 0.00 44.55 2.57
268 269 0.981183 TATCCACGGAGCCACAACTT 59.019 50.000 0.00 0.00 0.00 2.66
303 304 2.773329 GCGTCTTCGTAGATCGCTC 58.227 57.895 21.93 0.75 42.39 5.03
314 315 0.601311 ACAAGTCCAGCAGCGTCTTC 60.601 55.000 0.00 0.00 0.00 2.87
377 378 3.135530 ACCTTGAGCTTCTTCTCAGTGTT 59.864 43.478 0.00 0.00 43.23 3.32
419 420 2.872370 CGTAGTTTTACCCAGTCCTCG 58.128 52.381 0.00 0.00 0.00 4.63
439 440 7.148340 GGATCATTATACACCTGATTAGCAAGC 60.148 40.741 0.00 0.00 30.00 4.01
475 476 8.299570 ACAGAAATAAATGCCTTACAGTCAAAG 58.700 33.333 0.00 0.00 0.00 2.77
508 509 0.517316 GCCGTGTCATGTCTGGTTTC 59.483 55.000 0.00 0.00 0.00 2.78
564 583 4.578871 CACCTGACAAATACCAGATGACA 58.421 43.478 0.00 0.00 32.37 3.58
568 587 3.719268 TGCACCTGACAAATACCAGAT 57.281 42.857 0.00 0.00 32.37 2.90
581 600 2.165167 ACCAATGATGTCTTGCACCTG 58.835 47.619 0.00 0.00 0.00 4.00
673 754 6.546034 ACATGGGGTGTATACTTAAATCAAGC 59.454 38.462 4.17 0.00 39.91 4.01
686 767 2.823154 CGTTTGGAAACATGGGGTGTAT 59.177 45.455 0.00 0.00 41.14 2.29
907 5918 9.088987 ACAACTTTGTTTATAAATGACCCATCT 57.911 29.630 0.31 0.00 38.47 2.90
938 6454 3.678056 ACAAGCGACCTACTTCATCAA 57.322 42.857 0.00 0.00 0.00 2.57
969 6485 5.934625 AGATATCAACTCCGCATATTTGTCC 59.065 40.000 5.32 0.00 0.00 4.02
980 6496 5.490139 AACATTTGCAGATATCAACTCCG 57.510 39.130 5.32 0.00 0.00 4.63
1008 6530 1.066430 ACACCGCATGAAATACTCCGT 60.066 47.619 0.00 0.00 0.00 4.69
1009 6531 1.593006 GACACCGCATGAAATACTCCG 59.407 52.381 0.00 0.00 0.00 4.63
1011 6533 4.678509 TTTGACACCGCATGAAATACTC 57.321 40.909 0.00 0.00 0.00 2.59
1012 6534 5.643379 AATTTGACACCGCATGAAATACT 57.357 34.783 0.00 0.00 0.00 2.12
1013 6535 5.971202 CCTAATTTGACACCGCATGAAATAC 59.029 40.000 0.00 0.00 0.00 1.89
1015 6537 4.704540 TCCTAATTTGACACCGCATGAAAT 59.295 37.500 0.00 0.00 0.00 2.17
1029 6578 7.591165 CAGATCACTGGCATATTCCTAATTTG 58.409 38.462 0.00 0.00 40.14 2.32
1111 6679 2.931325 CAATTGTTTTGCTGCTGTGTGT 59.069 40.909 0.00 0.00 0.00 3.72
1114 6682 5.333492 CCATAACAATTGTTTTGCTGCTGTG 60.333 40.000 27.66 11.92 39.31 3.66
1194 6763 5.553581 CGTGGCGTGTTAAAATTTGACTTTG 60.554 40.000 2.43 0.00 0.00 2.77
1227 6796 7.700234 TGTAATATTCAAGCCAAAATAACAGCG 59.300 33.333 0.00 0.00 0.00 5.18
1277 6846 0.866906 CGCCACGCAAATGCCATTAG 60.867 55.000 0.00 0.00 37.91 1.73
1278 6847 1.138459 CGCCACGCAAATGCCATTA 59.862 52.632 0.00 0.00 37.91 1.90
1303 6872 9.328845 CATCAATAAAATCAAATAACCTTGGGG 57.671 33.333 0.00 0.00 38.88 4.96
1625 7268 8.816640 TCATTTGAAACTTCCTCAAAATTAGC 57.183 30.769 2.43 0.00 43.87 3.09
1855 7498 6.591935 TGGATACATAGCAAGGTAAAGGAAG 58.408 40.000 0.00 0.00 46.17 3.46
2229 8043 4.100963 ACCGAACTTGTGATATGCTATCCA 59.899 41.667 0.00 0.00 0.00 3.41
2271 8085 4.148128 AGATGAGGTATGGACTTGCAAG 57.852 45.455 24.84 24.84 0.00 4.01
2330 8146 7.113684 CAGACGTGTCCTAATTAAAGATCGATC 59.886 40.741 17.91 17.91 0.00 3.69
2337 8153 4.868734 GGTCCAGACGTGTCCTAATTAAAG 59.131 45.833 0.00 0.00 0.00 1.85
2342 8158 2.100989 GAGGTCCAGACGTGTCCTAAT 58.899 52.381 0.00 0.00 0.00 1.73
2348 8164 2.041976 CAGTGAGGTCCAGACGTGT 58.958 57.895 0.00 0.00 0.00 4.49
2368 8199 5.510179 CCTCAGTTGAAACATTTGGCTGATT 60.510 40.000 0.00 0.00 32.16 2.57
2378 8209 8.706322 ACCTTTAAATACCTCAGTTGAAACAT 57.294 30.769 0.00 0.00 0.00 2.71
2408 8239 7.506938 AGTGGGAAGCATTGCATAGTAATAAAT 59.493 33.333 11.91 0.00 38.65 1.40
2424 8255 1.533625 CCGAATTTCAGTGGGAAGCA 58.466 50.000 0.00 0.00 36.72 3.91
2474 8305 1.077501 ACGGGATGCTTCCACATGG 60.078 57.895 19.49 6.24 44.60 3.66
2547 8378 4.561734 CGATCCTTTCAAGTAGCCCTATCC 60.562 50.000 0.00 0.00 0.00 2.59
2559 8390 2.777114 TCCATGATCCCGATCCTTTCAA 59.223 45.455 0.00 0.00 37.02 2.69
2609 8440 0.541998 TCCAGCGAACTCCTCTCCAA 60.542 55.000 0.00 0.00 0.00 3.53
2678 8509 4.576879 CACTCATCATCATCCCAGGTATG 58.423 47.826 0.00 0.00 0.00 2.39
2679 8510 3.008813 GCACTCATCATCATCCCAGGTAT 59.991 47.826 0.00 0.00 0.00 2.73
2682 8513 1.142262 TGCACTCATCATCATCCCAGG 59.858 52.381 0.00 0.00 0.00 4.45
2734 8572 4.441415 CGTAGCTTACAAATAGAAGAGGCG 59.559 45.833 0.00 0.00 0.00 5.52
2775 8613 7.176865 CCTTATCATCATGATTGCCTTTGATCT 59.823 37.037 5.19 0.00 38.26 2.75
2833 8674 3.071167 GGTACATTTCCTCGATAAGGGCT 59.929 47.826 0.00 0.00 46.23 5.19
2859 8700 1.836166 CCCTCAAGATCTTCCAGCTGA 59.164 52.381 17.39 0.00 0.00 4.26
2878 8719 5.855045 ACATCACCGATCTATTTAGGAACC 58.145 41.667 0.00 0.00 0.00 3.62
2889 8730 2.092753 AGGCAATTGACATCACCGATCT 60.093 45.455 15.18 0.00 0.00 2.75
2900 8741 3.953201 GGCTATGCAGGCAATTGAC 57.047 52.632 10.34 6.35 46.44 3.18
2937 8778 8.649973 AATAGTAATCTCATCAGTTTTCGTCC 57.350 34.615 0.00 0.00 0.00 4.79
2952 8793 5.071115 GGCAGTCCTCCAAGAATAGTAATCT 59.929 44.000 0.00 0.00 0.00 2.40
3031 8872 4.894784 GGAATAATCCCTTGCTGACGATA 58.105 43.478 0.00 0.00 40.10 2.92
3088 8932 6.912591 CGAAATCAAGATATGCTAAAACACCC 59.087 38.462 0.00 0.00 0.00 4.61
3095 8939 5.610398 TGCCTCGAAATCAAGATATGCTAA 58.390 37.500 0.00 0.00 0.00 3.09
3106 8950 1.485124 TAGCTCCTGCCTCGAAATCA 58.515 50.000 0.00 0.00 40.80 2.57
3108 8952 1.542108 GCATAGCTCCTGCCTCGAAAT 60.542 52.381 9.50 0.00 40.80 2.17
3142 8986 2.507484 TGGTTGACTTGCAGAATGAGG 58.493 47.619 0.00 0.00 39.69 3.86
3168 9012 3.894832 GTGTAGGTCCACCCCACA 58.105 61.111 10.04 4.52 37.93 4.17
3179 9023 2.514592 CATGCCGGCTGGTGTAGG 60.515 66.667 29.70 3.21 37.67 3.18
3197 9041 1.902508 CTGGAGGTCTAAGAGGTGCAA 59.097 52.381 0.00 0.00 0.00 4.08
3198 9042 1.561643 CTGGAGGTCTAAGAGGTGCA 58.438 55.000 0.00 0.00 0.00 4.57
3234 9078 1.804396 TTCCTTGTGGTTGCCGCATG 61.804 55.000 2.04 5.12 43.92 4.06
3237 9081 1.212751 GATTCCTTGTGGTTGCCGC 59.787 57.895 0.00 0.00 34.23 6.53
3257 9101 2.607635 TGTCGAGCTTCACTTGTTCAAC 59.392 45.455 0.00 0.00 0.00 3.18
3277 9121 2.672961 TCCTAAACGCAGACTGGATG 57.327 50.000 4.26 0.00 0.00 3.51
3278 9122 2.973945 GTTCCTAAACGCAGACTGGAT 58.026 47.619 4.26 0.00 0.00 3.41
3308 9547 2.505364 GAAGGAGGGCTTGGGTGCAT 62.505 60.000 0.00 0.00 34.04 3.96
3350 9597 3.358700 CGTTCATGTTTCACTCATTTGCG 59.641 43.478 0.00 0.00 0.00 4.85
3352 9599 4.911610 GTCCGTTCATGTTTCACTCATTTG 59.088 41.667 0.00 0.00 0.00 2.32
3353 9600 4.023193 GGTCCGTTCATGTTTCACTCATTT 60.023 41.667 0.00 0.00 0.00 2.32
3354 9601 3.502211 GGTCCGTTCATGTTTCACTCATT 59.498 43.478 0.00 0.00 0.00 2.57
3389 9636 1.112113 GGCCGTCCAGAGACAGATTA 58.888 55.000 0.00 0.00 43.73 1.75
3451 9711 5.997746 ACACCAGAGAAATGATCGAAAAAGA 59.002 36.000 0.00 0.00 0.00 2.52
3452 9712 6.246420 ACACCAGAGAAATGATCGAAAAAG 57.754 37.500 0.00 0.00 0.00 2.27
3459 9720 8.286191 AGGAATTAAACACCAGAGAAATGATC 57.714 34.615 0.00 0.00 0.00 2.92
3498 9770 7.230747 TGGTTGAGGTTTCATATATACCCATG 58.769 38.462 0.30 0.00 31.15 3.66
3500 9772 6.833346 TGGTTGAGGTTTCATATATACCCA 57.167 37.500 0.30 0.00 31.15 4.51
3501 9773 7.942341 TGAATGGTTGAGGTTTCATATATACCC 59.058 37.037 0.30 0.00 31.15 3.69
3502 9774 8.918202 TGAATGGTTGAGGTTTCATATATACC 57.082 34.615 0.00 0.00 32.29 2.73
3506 9778 9.645128 ATGAATGAATGGTTGAGGTTTCATATA 57.355 29.630 0.00 0.00 37.72 0.86
3530 9882 4.300803 CACAGGAACATGTGGAAAACATG 58.699 43.478 15.12 15.12 45.53 3.21
3547 9899 4.156556 CACATGGTTTTCTGGATACACAGG 59.843 45.833 0.00 0.00 46.17 4.00
3552 9904 7.649306 GCATTAATCACATGGTTTTCTGGATAC 59.351 37.037 0.00 0.00 0.00 2.24
3567 9919 5.163468 ACCAAATAATGCCGCATTAATCACA 60.163 36.000 25.62 8.01 39.34 3.58
3578 9930 5.291614 CCATTTCTCAAACCAAATAATGCCG 59.708 40.000 0.00 0.00 0.00 5.69
3581 9933 5.291614 CGGCCATTTCTCAAACCAAATAATG 59.708 40.000 2.24 0.00 0.00 1.90
3607 9959 9.524496 AGAGGGAATAATAAACTAACCGTTTTT 57.476 29.630 0.00 0.00 43.06 1.94
3626 9978 6.901615 TCTTATATTTTGGGACAGAGGGAA 57.098 37.500 0.00 0.00 42.39 3.97
3628 9980 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
3630 9982 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
3631 9983 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3676 10028 9.635404 TCCGTCCCATAATATAAGAACATTTTT 57.365 29.630 0.00 0.00 0.00 1.94
3677 10029 9.284968 CTCCGTCCCATAATATAAGAACATTTT 57.715 33.333 0.00 0.00 0.00 1.82
3681 10033 5.247564 CCCTCCGTCCCATAATATAAGAACA 59.752 44.000 0.00 0.00 0.00 3.18
3682 10034 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3683 10035 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3684 10036 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3685 10037 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3686 10038 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3687 10039 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3688 10040 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3692 10044 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3694 10046 1.304713 GTGTACTCCCTCCGTCCCA 60.305 63.158 0.00 0.00 0.00 4.37
3695 10047 0.901580 TTGTGTACTCCCTCCGTCCC 60.902 60.000 0.00 0.00 0.00 4.46
3696 10048 0.531200 CTTGTGTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
3697 10049 0.108756 GCTTGTGTACTCCCTCCGTC 60.109 60.000 0.00 0.00 0.00 4.79
3698 10050 0.542232 AGCTTGTGTACTCCCTCCGT 60.542 55.000 0.00 0.00 0.00 4.69
3699 10051 1.471119 TAGCTTGTGTACTCCCTCCG 58.529 55.000 0.00 0.00 0.00 4.63
3700 10052 4.216708 ACTATAGCTTGTGTACTCCCTCC 58.783 47.826 0.00 0.00 0.00 4.30
3701 10053 6.063404 AGTACTATAGCTTGTGTACTCCCTC 58.937 44.000 15.14 0.00 40.82 4.30
3702 10054 6.015991 AGTACTATAGCTTGTGTACTCCCT 57.984 41.667 15.14 0.63 40.82 4.20
3703 10055 6.712179 AAGTACTATAGCTTGTGTACTCCC 57.288 41.667 18.82 0.55 42.99 4.30
3704 10056 6.476053 GCAAAGTACTATAGCTTGTGTACTCC 59.524 42.308 18.82 10.99 42.99 3.85
3705 10057 7.033791 TGCAAAGTACTATAGCTTGTGTACTC 58.966 38.462 18.82 11.37 42.99 2.59
3706 10058 6.931838 TGCAAAGTACTATAGCTTGTGTACT 58.068 36.000 15.14 15.14 44.87 2.73
3707 10059 7.772332 ATGCAAAGTACTATAGCTTGTGTAC 57.228 36.000 13.21 12.12 36.48 2.90
3708 10060 8.909923 TCTATGCAAAGTACTATAGCTTGTGTA 58.090 33.333 13.21 0.00 0.00 2.90
3710 10062 7.706607 TGTCTATGCAAAGTACTATAGCTTGTG 59.293 37.037 13.21 0.35 0.00 3.33
3711 10063 7.782049 TGTCTATGCAAAGTACTATAGCTTGT 58.218 34.615 13.21 0.00 0.00 3.16
3712 10064 8.543774 GTTGTCTATGCAAAGTACTATAGCTTG 58.456 37.037 13.21 7.54 0.00 4.01
3713 10065 7.711339 GGTTGTCTATGCAAAGTACTATAGCTT 59.289 37.037 13.21 10.19 0.00 3.74
3714 10066 7.070074 AGGTTGTCTATGCAAAGTACTATAGCT 59.930 37.037 13.21 0.00 0.00 3.32
3715 10067 7.210873 AGGTTGTCTATGCAAAGTACTATAGC 58.789 38.462 0.00 1.19 0.00 2.97
3718 10070 9.953565 TTTAAGGTTGTCTATGCAAAGTACTAT 57.046 29.630 0.00 0.00 0.00 2.12
3719 10071 9.781633 TTTTAAGGTTGTCTATGCAAAGTACTA 57.218 29.630 0.00 0.00 0.00 1.82
3720 10072 8.565416 GTTTTAAGGTTGTCTATGCAAAGTACT 58.435 33.333 0.00 0.00 0.00 2.73
3721 10073 8.565416 AGTTTTAAGGTTGTCTATGCAAAGTAC 58.435 33.333 0.00 0.00 0.00 2.73
3724 10076 6.863126 CCAGTTTTAAGGTTGTCTATGCAAAG 59.137 38.462 0.00 0.00 0.00 2.77
3731 10280 7.340256 TCAAAGACCAGTTTTAAGGTTGTCTA 58.660 34.615 0.00 0.00 38.50 2.59
3791 10340 8.966868 ACAGAAAAACCAGAAACTAAGATTTGA 58.033 29.630 0.00 0.00 0.00 2.69
3794 10343 8.753497 AGACAGAAAAACCAGAAACTAAGATT 57.247 30.769 0.00 0.00 0.00 2.40
3795 10344 8.753497 AAGACAGAAAAACCAGAAACTAAGAT 57.247 30.769 0.00 0.00 0.00 2.40
3807 10356 3.791353 CACAAGCGAAAGACAGAAAAACC 59.209 43.478 0.00 0.00 0.00 3.27
3837 10386 5.256474 ACCATGCATCTTGTTAGCTTTACT 58.744 37.500 0.00 0.00 0.00 2.24
3838 10387 5.567138 ACCATGCATCTTGTTAGCTTTAC 57.433 39.130 0.00 0.00 0.00 2.01
3839 10388 6.884295 AGTAACCATGCATCTTGTTAGCTTTA 59.116 34.615 11.36 0.00 0.00 1.85
3840 10389 5.711976 AGTAACCATGCATCTTGTTAGCTTT 59.288 36.000 11.36 0.19 0.00 3.51
3846 10395 4.333649 CGATCAGTAACCATGCATCTTGTT 59.666 41.667 0.00 3.58 0.00 2.83
3847 10396 3.873361 CGATCAGTAACCATGCATCTTGT 59.127 43.478 0.00 0.00 0.00 3.16
3850 10399 2.103771 AGCGATCAGTAACCATGCATCT 59.896 45.455 0.00 0.00 0.00 2.90
3852 10401 2.216046 CAGCGATCAGTAACCATGCAT 58.784 47.619 0.00 0.00 0.00 3.96
3854 10403 0.305922 GCAGCGATCAGTAACCATGC 59.694 55.000 0.00 0.00 0.00 4.06
3856 10405 1.066215 TGTGCAGCGATCAGTAACCAT 60.066 47.619 0.00 0.00 0.00 3.55
3857 10406 0.320050 TGTGCAGCGATCAGTAACCA 59.680 50.000 0.00 0.00 0.00 3.67
3858 10407 0.721718 GTGTGCAGCGATCAGTAACC 59.278 55.000 0.00 0.00 0.00 2.85
3859 10408 1.391485 CAGTGTGCAGCGATCAGTAAC 59.609 52.381 0.00 0.00 0.00 2.50
3860 10409 1.272212 TCAGTGTGCAGCGATCAGTAA 59.728 47.619 0.00 0.00 0.00 2.24
3861 10410 0.887933 TCAGTGTGCAGCGATCAGTA 59.112 50.000 0.00 0.00 0.00 2.74
3862 10411 0.248565 ATCAGTGTGCAGCGATCAGT 59.751 50.000 0.00 0.00 0.00 3.41
3863 10412 0.651031 CATCAGTGTGCAGCGATCAG 59.349 55.000 0.00 0.00 0.00 2.90
3888 10437 5.460419 CAGACATCTTATTGACGAGGTAAGC 59.540 44.000 0.00 0.00 0.00 3.09
4025 10574 7.253905 AGGCCTCAAGTAATCAGTACTAAAA 57.746 36.000 0.00 0.00 42.55 1.52
4026 10575 6.869206 AGGCCTCAAGTAATCAGTACTAAA 57.131 37.500 0.00 0.00 42.55 1.85
4028 10577 6.670617 ACTAGGCCTCAAGTAATCAGTACTA 58.329 40.000 9.68 0.00 42.55 1.82
4041 10590 3.147629 GACGCTAGATACTAGGCCTCAA 58.852 50.000 9.68 0.00 0.00 3.02
4048 10597 5.703592 ACTCATGGAAGACGCTAGATACTAG 59.296 44.000 0.00 0.00 0.00 2.57
4054 10603 1.135139 GCACTCATGGAAGACGCTAGA 59.865 52.381 0.00 0.00 0.00 2.43
4074 10623 3.256879 TCAGTTAGTCAGCCAACAGAGAG 59.743 47.826 0.00 0.00 0.00 3.20
4083 10632 6.094048 TCAATTGCTAATTCAGTTAGTCAGCC 59.906 38.462 0.00 0.00 41.55 4.85
4153 10702 0.533951 CCCTCTGCTTTTCCAATGGC 59.466 55.000 0.00 0.00 0.00 4.40
4158 10707 1.259609 CAATGCCCTCTGCTTTTCCA 58.740 50.000 0.00 0.00 42.00 3.53
4159 10708 0.108472 GCAATGCCCTCTGCTTTTCC 60.108 55.000 0.00 0.00 42.00 3.13
4160 10709 0.457337 CGCAATGCCCTCTGCTTTTC 60.457 55.000 0.00 0.00 42.00 2.29
4161 10710 1.588082 CGCAATGCCCTCTGCTTTT 59.412 52.632 0.00 0.00 42.00 2.27
4187 10737 3.121030 CCGCCCGAAGAGCAGTTG 61.121 66.667 0.00 0.00 0.00 3.16
4190 10740 2.859273 ATTCACCGCCCGAAGAGCAG 62.859 60.000 0.00 0.00 0.00 4.24
4199 10749 2.275380 AAACCTGCATTCACCGCCC 61.275 57.895 0.00 0.00 0.00 6.13
4213 10763 2.670414 CACTCTCGATCTTCTGCAAACC 59.330 50.000 0.00 0.00 0.00 3.27
4227 10777 2.743928 GCCTGGCCAACACTCTCG 60.744 66.667 7.01 0.00 0.00 4.04
4244 10794 2.816087 CACCACTTCAATCTTGACCTGG 59.184 50.000 11.19 11.19 38.83 4.45
4249 10800 1.202758 ACGCCACCACTTCAATCTTGA 60.203 47.619 0.00 0.00 34.92 3.02
4281 10832 1.808411 TTTTGCCTTAGAGTGAGCCG 58.192 50.000 0.00 0.00 0.00 5.52
4347 10914 4.142687 GGAACAAACATTATGGACGGTGAG 60.143 45.833 0.00 0.00 0.00 3.51
4350 10917 3.086282 GGGAACAAACATTATGGACGGT 58.914 45.455 0.00 0.00 0.00 4.83
4365 10983 1.227321 GTGTCCAACGTCGGGAACA 60.227 57.895 10.20 8.39 35.88 3.18
4368 10986 3.618750 GGGTGTCCAACGTCGGGA 61.619 66.667 4.89 4.89 0.00 5.14
4371 10989 4.657824 AGCGGGTGTCCAACGTCG 62.658 66.667 0.00 0.00 0.00 5.12
4410 11028 1.500396 CTCATCGTCGACGGTCACA 59.500 57.895 35.05 18.02 40.29 3.58
4535 11153 3.715315 ACTGACTCCATGGATCATCATGT 59.285 43.478 16.63 7.65 42.02 3.21
4536 11154 4.353383 ACTGACTCCATGGATCATCATG 57.647 45.455 16.63 14.17 42.92 3.07
4538 11156 3.135348 GGAACTGACTCCATGGATCATCA 59.865 47.826 16.63 17.44 35.36 3.07
4541 11159 1.839994 GGGAACTGACTCCATGGATCA 59.160 52.381 16.63 18.48 37.20 2.92
4543 11161 0.833287 CGGGAACTGACTCCATGGAT 59.167 55.000 16.63 5.60 37.20 3.41
4548 11166 1.320344 CGATCCGGGAACTGACTCCA 61.320 60.000 0.00 0.00 37.20 3.86
4581 11199 1.748122 GTGGATGTGGCTGCAGGAG 60.748 63.158 17.12 0.00 0.00 3.69
4641 11259 0.963225 TAGCAAGACCGCACACTGTA 59.037 50.000 0.00 0.00 0.00 2.74
4645 11263 2.295253 ATAGTAGCAAGACCGCACAC 57.705 50.000 0.00 0.00 0.00 3.82
4647 11265 3.063588 GGAAAATAGTAGCAAGACCGCAC 59.936 47.826 0.00 0.00 0.00 5.34
4723 11347 3.969117 TCACTGTGCTAAAAGTTGCTG 57.031 42.857 2.12 0.00 0.00 4.41
4738 11362 6.930667 TCAATCCAACACATATGATCACTG 57.069 37.500 10.38 1.06 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.