Multiple sequence alignment - TraesCS6A01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G355800 chr6A 100.000 2267 0 0 1 2267 586876669 586878935 0.000000e+00 4187.0
1 TraesCS6A01G355800 chr6A 97.170 212 5 1 708 919 615704975 615704765 7.700000e-95 357.0
2 TraesCS6A01G355800 chr6A 86.890 328 28 12 1788 2108 587565626 587565945 9.960000e-94 353.0
3 TraesCS6A01G355800 chr6A 88.321 274 15 13 1530 1791 587564386 587564654 1.690000e-81 313.0
4 TraesCS6A01G355800 chr6A 80.338 473 41 21 1082 1512 587563944 587564406 6.080000e-81 311.0
5 TraesCS6A01G355800 chr6A 93.421 152 10 0 923 1074 587563824 587563975 2.270000e-55 226.0
6 TraesCS6A01G355800 chr6A 84.322 236 26 8 1561 1791 587762629 587762400 1.050000e-53 220.0
7 TraesCS6A01G355800 chr6A 85.714 112 11 3 970 1077 587728828 587728718 1.840000e-21 113.0
8 TraesCS6A01G355800 chr6A 87.143 70 5 3 97 164 587563143 587563210 2.410000e-10 76.8
9 TraesCS6A01G355800 chr6D 86.246 698 35 22 16 697 438459978 438460630 0.000000e+00 701.0
10 TraesCS6A01G355800 chr6D 87.480 615 45 4 923 1506 438460739 438461352 0.000000e+00 680.0
11 TraesCS6A01G355800 chr6D 87.609 460 28 7 1082 1512 438805146 438805605 7.230000e-140 507.0
12 TraesCS6A01G355800 chr6D 90.288 278 15 8 1522 1791 438805577 438805850 9.960000e-94 353.0
13 TraesCS6A01G355800 chr6D 84.894 331 31 13 1788 2108 438806818 438807139 1.310000e-82 316.0
14 TraesCS6A01G355800 chr6D 90.110 182 14 3 1520 1698 438461328 438461508 1.350000e-57 233.0
15 TraesCS6A01G355800 chr6D 93.431 137 5 3 2134 2267 438557652 438557787 1.370000e-47 200.0
16 TraesCS6A01G355800 chr6D 83.505 97 6 6 68 164 438802868 438802954 5.190000e-12 82.4
17 TraesCS6A01G355800 chr6B 87.805 615 49 17 923 1512 663800343 663800956 0.000000e+00 697.0
18 TraesCS6A01G355800 chr6B 91.185 329 22 6 376 697 663799905 663800233 7.430000e-120 440.0
19 TraesCS6A01G355800 chr6B 88.385 353 17 10 1 337 663799553 663799897 9.750000e-109 403.0
20 TraesCS6A01G355800 chr6B 90.036 281 15 9 1520 1791 663840582 663840858 3.580000e-93 351.0
21 TraesCS6A01G355800 chr6B 86.751 317 22 8 266 581 608037656 608037953 3.610000e-88 335.0
22 TraesCS6A01G355800 chr6B 94.681 188 10 0 923 1110 608038439 608038626 2.200000e-75 292.0
23 TraesCS6A01G355800 chr6B 81.793 357 24 16 1192 1512 663840261 663840612 6.210000e-66 261.0
24 TraesCS6A01G355800 chr6B 77.754 463 51 26 1839 2267 664028267 664027823 1.050000e-58 237.0
25 TraesCS6A01G355800 chr6B 76.596 235 22 5 98 319 664031808 664031594 5.150000e-17 99.0
26 TraesCS6A01G355800 chr3B 87.586 435 33 8 266 699 588909379 588909793 3.390000e-133 484.0
27 TraesCS6A01G355800 chr3B 96.651 209 7 0 708 916 434718755 434718963 4.630000e-92 348.0
28 TraesCS6A01G355800 chr3B 94.681 188 10 0 923 1110 588909899 588910086 2.200000e-75 292.0
29 TraesCS6A01G355800 chr3B 100.000 28 0 0 238 265 588909338 588909365 4.000000e-03 52.8
30 TraesCS6A01G355800 chr7B 87.356 435 35 8 266 699 651560995 651561410 4.380000e-132 481.0
31 TraesCS6A01G355800 chr7B 87.126 435 36 8 266 699 651736007 651736422 2.040000e-130 475.0
32 TraesCS6A01G355800 chr7B 95.745 188 8 0 923 1110 651561516 651561703 1.020000e-78 303.0
33 TraesCS6A01G355800 chr7B 95.745 188 8 0 923 1110 651736528 651736715 1.020000e-78 303.0
34 TraesCS6A01G355800 chr1A 99.057 212 2 0 708 919 3436777 3436988 4.570000e-102 381.0
35 TraesCS6A01G355800 chr2A 96.789 218 6 1 707 923 778640442 778640225 1.660000e-96 363.0
36 TraesCS6A01G355800 chr2A 97.183 213 6 0 708 920 750196547 750196759 5.950000e-96 361.0
37 TraesCS6A01G355800 chr2A 100.000 29 0 0 238 266 500244673 500244701 1.000000e-03 54.7
38 TraesCS6A01G355800 chr7A 96.759 216 7 0 708 923 1429396 1429611 5.950000e-96 361.0
39 TraesCS6A01G355800 chr5B 96.714 213 6 1 708 920 382233503 382233714 9.960000e-94 353.0
40 TraesCS6A01G355800 chr4A 96.244 213 8 0 708 920 36395392 36395180 1.290000e-92 350.0
41 TraesCS6A01G355800 chr2B 96.190 210 8 0 711 920 773428076 773427867 6.000000e-91 344.0
42 TraesCS6A01G355800 chr4B 94.444 72 4 0 266 337 667298471 667298542 6.620000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G355800 chr6A 586876669 586878935 2266 False 4187.000000 4187 100.000000 1 2267 1 chr6A.!!$F1 2266
1 TraesCS6A01G355800 chr6A 587563143 587565945 2802 False 255.960000 353 87.222600 97 2108 5 chr6A.!!$F2 2011
2 TraesCS6A01G355800 chr6D 438459978 438461508 1530 False 538.000000 701 87.945333 16 1698 3 chr6D.!!$F2 1682
3 TraesCS6A01G355800 chr6D 438802868 438807139 4271 False 314.600000 507 86.574000 68 2108 4 chr6D.!!$F3 2040
4 TraesCS6A01G355800 chr6B 663799553 663800956 1403 False 513.333333 697 89.125000 1 1512 3 chr6B.!!$F2 1511
5 TraesCS6A01G355800 chr6B 608037656 608038626 970 False 313.500000 335 90.716000 266 1110 2 chr6B.!!$F1 844
6 TraesCS6A01G355800 chr6B 663840261 663840858 597 False 306.000000 351 85.914500 1192 1791 2 chr6B.!!$F3 599
7 TraesCS6A01G355800 chr3B 588909338 588910086 748 False 276.266667 484 94.089000 238 1110 3 chr3B.!!$F2 872
8 TraesCS6A01G355800 chr7B 651560995 651561703 708 False 392.000000 481 91.550500 266 1110 2 chr7B.!!$F1 844
9 TraesCS6A01G355800 chr7B 651736007 651736715 708 False 389.000000 475 91.435500 266 1110 2 chr7B.!!$F2 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 1189 0.033601 TTGTGGCTTGTGGAGGTTGT 60.034 50.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2247 5100 0.037326 CCGGTGAGTGTGTGTAGCAT 60.037 55.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 112 5.625150 CCCCAAGAAGAAGAAGAAGAAGAA 58.375 41.667 0.00 0.00 0.00 2.52
108 113 6.064717 CCCCAAGAAGAAGAAGAAGAAGAAA 58.935 40.000 0.00 0.00 0.00 2.52
109 114 6.547510 CCCCAAGAAGAAGAAGAAGAAGAAAA 59.452 38.462 0.00 0.00 0.00 2.29
113 118 9.934190 CAAGAAGAAGAAGAAGAAGAAAAAGAG 57.066 33.333 0.00 0.00 0.00 2.85
114 119 8.675705 AGAAGAAGAAGAAGAAGAAAAAGAGG 57.324 34.615 0.00 0.00 0.00 3.69
116 121 6.360618 AGAAGAAGAAGAAGAAAAAGAGGCA 58.639 36.000 0.00 0.00 0.00 4.75
119 124 3.142174 AGAAGAAGAAAAAGAGGCACGG 58.858 45.455 0.00 0.00 0.00 4.94
312 339 1.447314 CTGTTTAGTCCCCGCGGTC 60.447 63.158 26.12 14.05 0.00 4.79
337 369 3.434319 CGTGCGGGCTCTGCAAAT 61.434 61.111 9.85 0.00 45.23 2.32
339 371 1.439353 CGTGCGGGCTCTGCAAATAT 61.439 55.000 9.85 0.00 45.23 1.28
340 372 1.593196 GTGCGGGCTCTGCAAATATA 58.407 50.000 9.85 0.00 45.23 0.86
341 373 1.264288 GTGCGGGCTCTGCAAATATAC 59.736 52.381 9.85 0.00 45.23 1.47
342 374 1.140852 TGCGGGCTCTGCAAATATACT 59.859 47.619 6.26 0.00 39.87 2.12
343 375 1.801178 GCGGGCTCTGCAAATATACTC 59.199 52.381 1.59 0.00 0.00 2.59
344 376 2.061773 CGGGCTCTGCAAATATACTCG 58.938 52.381 0.00 0.00 0.00 4.18
347 379 3.467803 GGCTCTGCAAATATACTCGGTT 58.532 45.455 0.00 0.00 0.00 4.44
348 380 3.877508 GGCTCTGCAAATATACTCGGTTT 59.122 43.478 0.00 0.00 0.00 3.27
350 382 5.177696 GGCTCTGCAAATATACTCGGTTTAG 59.822 44.000 0.00 0.00 0.00 1.85
351 383 5.753921 GCTCTGCAAATATACTCGGTTTAGT 59.246 40.000 0.00 0.00 0.00 2.24
353 385 7.108841 TCTGCAAATATACTCGGTTTAGTCT 57.891 36.000 0.00 0.00 0.00 3.24
354 386 7.553334 TCTGCAAATATACTCGGTTTAGTCTT 58.447 34.615 0.00 0.00 0.00 3.01
355 387 8.038944 TCTGCAAATATACTCGGTTTAGTCTTT 58.961 33.333 0.00 0.00 0.00 2.52
356 388 8.556213 TGCAAATATACTCGGTTTAGTCTTTT 57.444 30.769 0.00 0.00 0.00 2.27
357 389 9.005777 TGCAAATATACTCGGTTTAGTCTTTTT 57.994 29.630 0.00 0.00 0.00 1.94
358 390 9.274065 GCAAATATACTCGGTTTAGTCTTTTTG 57.726 33.333 0.00 0.00 32.62 2.44
362 394 7.797038 ATACTCGGTTTAGTCTTTTTGTTGT 57.203 32.000 0.00 0.00 0.00 3.32
363 395 6.505044 ACTCGGTTTAGTCTTTTTGTTGTT 57.495 33.333 0.00 0.00 0.00 2.83
364 396 6.549061 ACTCGGTTTAGTCTTTTTGTTGTTC 58.451 36.000 0.00 0.00 0.00 3.18
365 397 5.561993 TCGGTTTAGTCTTTTTGTTGTTCG 58.438 37.500 0.00 0.00 0.00 3.95
366 398 4.203563 CGGTTTAGTCTTTTTGTTGTTCGC 59.796 41.667 0.00 0.00 0.00 4.70
367 399 5.337554 GGTTTAGTCTTTTTGTTGTTCGCT 58.662 37.500 0.00 0.00 0.00 4.93
368 400 5.803461 GGTTTAGTCTTTTTGTTGTTCGCTT 59.197 36.000 0.00 0.00 0.00 4.68
369 401 6.309494 GGTTTAGTCTTTTTGTTGTTCGCTTT 59.691 34.615 0.00 0.00 0.00 3.51
370 402 7.148705 GGTTTAGTCTTTTTGTTGTTCGCTTTT 60.149 33.333 0.00 0.00 0.00 2.27
371 403 7.876896 TTAGTCTTTTTGTTGTTCGCTTTTT 57.123 28.000 0.00 0.00 0.00 1.94
615 929 6.933521 CAGGTTATTATCTCATCTCCCTGTTG 59.066 42.308 0.00 0.00 33.82 3.33
616 930 5.703130 GGTTATTATCTCATCTCCCTGTTGC 59.297 44.000 0.00 0.00 0.00 4.17
617 931 3.459232 TTATCTCATCTCCCTGTTGCG 57.541 47.619 0.00 0.00 0.00 4.85
684 1018 8.895932 AATATTATCAGTTTTTGTTCGTCAGC 57.104 30.769 0.00 0.00 0.00 4.26
710 1117 9.994432 CAAGTTCAGAGGACAACATAATATTTC 57.006 33.333 0.00 0.00 0.00 2.17
711 1118 9.965902 AAGTTCAGAGGACAACATAATATTTCT 57.034 29.630 0.00 0.00 0.00 2.52
712 1119 9.388506 AGTTCAGAGGACAACATAATATTTCTG 57.611 33.333 0.00 0.00 0.00 3.02
713 1120 7.792374 TCAGAGGACAACATAATATTTCTGC 57.208 36.000 0.00 0.00 31.90 4.26
714 1121 7.568349 TCAGAGGACAACATAATATTTCTGCT 58.432 34.615 0.00 0.00 31.90 4.24
715 1122 8.704668 TCAGAGGACAACATAATATTTCTGCTA 58.295 33.333 0.00 0.00 31.90 3.49
716 1123 8.768955 CAGAGGACAACATAATATTTCTGCTAC 58.231 37.037 0.00 0.00 0.00 3.58
717 1124 8.486210 AGAGGACAACATAATATTTCTGCTACA 58.514 33.333 0.00 0.00 0.00 2.74
718 1125 9.277783 GAGGACAACATAATATTTCTGCTACAT 57.722 33.333 0.00 0.00 0.00 2.29
731 1138 7.603180 TTTCTGCTACATATGATCCTAGTGT 57.397 36.000 10.38 0.00 0.00 3.55
732 1139 6.581171 TCTGCTACATATGATCCTAGTGTG 57.419 41.667 10.38 0.00 0.00 3.82
733 1140 5.478332 TCTGCTACATATGATCCTAGTGTGG 59.522 44.000 10.38 0.00 0.00 4.17
734 1141 5.393866 TGCTACATATGATCCTAGTGTGGA 58.606 41.667 10.38 0.00 40.82 4.02
735 1142 5.478332 TGCTACATATGATCCTAGTGTGGAG 59.522 44.000 10.38 0.00 39.78 3.86
736 1143 5.478679 GCTACATATGATCCTAGTGTGGAGT 59.521 44.000 10.38 0.00 39.78 3.85
737 1144 5.798125 ACATATGATCCTAGTGTGGAGTG 57.202 43.478 10.38 0.00 39.78 3.51
738 1145 4.039730 ACATATGATCCTAGTGTGGAGTGC 59.960 45.833 10.38 0.00 39.78 4.40
739 1146 2.238084 TGATCCTAGTGTGGAGTGCT 57.762 50.000 0.00 0.00 39.78 4.40
740 1147 2.103373 TGATCCTAGTGTGGAGTGCTC 58.897 52.381 0.00 0.00 39.78 4.26
741 1148 1.066303 GATCCTAGTGTGGAGTGCTCG 59.934 57.143 0.00 0.00 39.78 5.03
742 1149 0.965866 TCCTAGTGTGGAGTGCTCGG 60.966 60.000 0.00 0.00 0.00 4.63
743 1150 1.153745 CTAGTGTGGAGTGCTCGGC 60.154 63.158 0.00 0.00 0.00 5.54
744 1151 2.564553 CTAGTGTGGAGTGCTCGGCC 62.565 65.000 0.00 0.00 0.00 6.13
745 1152 4.008933 GTGTGGAGTGCTCGGCCT 62.009 66.667 0.00 0.00 0.00 5.19
746 1153 3.241530 TGTGGAGTGCTCGGCCTT 61.242 61.111 0.00 0.00 0.00 4.35
747 1154 2.032681 GTGGAGTGCTCGGCCTTT 59.967 61.111 0.00 0.00 0.00 3.11
748 1155 1.295423 GTGGAGTGCTCGGCCTTTA 59.705 57.895 0.00 0.00 0.00 1.85
749 1156 1.019805 GTGGAGTGCTCGGCCTTTAC 61.020 60.000 0.00 0.00 0.00 2.01
750 1157 1.192146 TGGAGTGCTCGGCCTTTACT 61.192 55.000 0.00 0.00 0.00 2.24
751 1158 0.822164 GGAGTGCTCGGCCTTTACTA 59.178 55.000 0.00 0.00 0.00 1.82
752 1159 1.202428 GGAGTGCTCGGCCTTTACTAG 60.202 57.143 0.00 0.00 0.00 2.57
753 1160 0.175989 AGTGCTCGGCCTTTACTAGC 59.824 55.000 0.00 0.57 0.00 3.42
754 1161 0.175989 GTGCTCGGCCTTTACTAGCT 59.824 55.000 0.00 0.00 34.28 3.32
755 1162 0.175760 TGCTCGGCCTTTACTAGCTG 59.824 55.000 0.00 0.00 36.68 4.24
756 1163 0.175989 GCTCGGCCTTTACTAGCTGT 59.824 55.000 0.00 0.00 36.71 4.40
757 1164 1.407979 GCTCGGCCTTTACTAGCTGTA 59.592 52.381 0.00 0.00 36.71 2.74
758 1165 2.159142 GCTCGGCCTTTACTAGCTGTAA 60.159 50.000 0.00 0.25 39.17 2.41
759 1166 3.492829 GCTCGGCCTTTACTAGCTGTAAT 60.493 47.826 0.00 0.00 40.41 1.89
760 1167 4.299978 CTCGGCCTTTACTAGCTGTAATC 58.700 47.826 0.00 0.00 40.41 1.75
761 1168 3.958798 TCGGCCTTTACTAGCTGTAATCT 59.041 43.478 0.00 0.00 40.41 2.40
762 1169 4.404715 TCGGCCTTTACTAGCTGTAATCTT 59.595 41.667 0.00 0.00 40.41 2.40
763 1170 5.105064 TCGGCCTTTACTAGCTGTAATCTTT 60.105 40.000 0.00 0.00 40.41 2.52
764 1171 5.585047 CGGCCTTTACTAGCTGTAATCTTTT 59.415 40.000 0.00 0.00 40.41 2.27
765 1172 6.456988 CGGCCTTTACTAGCTGTAATCTTTTG 60.457 42.308 0.00 0.00 40.41 2.44
766 1173 6.374613 GGCCTTTACTAGCTGTAATCTTTTGT 59.625 38.462 0.00 0.00 40.41 2.83
767 1174 7.244192 GCCTTTACTAGCTGTAATCTTTTGTG 58.756 38.462 0.00 0.00 40.41 3.33
768 1175 7.626452 GCCTTTACTAGCTGTAATCTTTTGTGG 60.626 40.741 0.00 0.00 40.41 4.17
769 1176 6.737254 TTACTAGCTGTAATCTTTTGTGGC 57.263 37.500 0.00 0.00 36.33 5.01
770 1177 4.911390 ACTAGCTGTAATCTTTTGTGGCT 58.089 39.130 0.00 0.00 0.00 4.75
771 1178 5.316987 ACTAGCTGTAATCTTTTGTGGCTT 58.683 37.500 0.00 0.00 0.00 4.35
772 1179 4.510038 AGCTGTAATCTTTTGTGGCTTG 57.490 40.909 0.00 0.00 0.00 4.01
773 1180 3.891366 AGCTGTAATCTTTTGTGGCTTGT 59.109 39.130 0.00 0.00 0.00 3.16
774 1181 3.983344 GCTGTAATCTTTTGTGGCTTGTG 59.017 43.478 0.00 0.00 0.00 3.33
775 1182 4.549458 CTGTAATCTTTTGTGGCTTGTGG 58.451 43.478 0.00 0.00 0.00 4.17
776 1183 4.211125 TGTAATCTTTTGTGGCTTGTGGA 58.789 39.130 0.00 0.00 0.00 4.02
777 1184 4.278170 TGTAATCTTTTGTGGCTTGTGGAG 59.722 41.667 0.00 0.00 0.00 3.86
778 1185 1.691196 TCTTTTGTGGCTTGTGGAGG 58.309 50.000 0.00 0.00 0.00 4.30
779 1186 1.064017 TCTTTTGTGGCTTGTGGAGGT 60.064 47.619 0.00 0.00 0.00 3.85
780 1187 1.756538 CTTTTGTGGCTTGTGGAGGTT 59.243 47.619 0.00 0.00 0.00 3.50
781 1188 1.110442 TTTGTGGCTTGTGGAGGTTG 58.890 50.000 0.00 0.00 0.00 3.77
782 1189 0.033601 TTGTGGCTTGTGGAGGTTGT 60.034 50.000 0.00 0.00 0.00 3.32
783 1190 0.840617 TGTGGCTTGTGGAGGTTGTA 59.159 50.000 0.00 0.00 0.00 2.41
784 1191 1.202758 TGTGGCTTGTGGAGGTTGTAG 60.203 52.381 0.00 0.00 0.00 2.74
785 1192 1.136828 TGGCTTGTGGAGGTTGTAGT 58.863 50.000 0.00 0.00 0.00 2.73
786 1193 1.202758 TGGCTTGTGGAGGTTGTAGTG 60.203 52.381 0.00 0.00 0.00 2.74
787 1194 1.071699 GGCTTGTGGAGGTTGTAGTGA 59.928 52.381 0.00 0.00 0.00 3.41
788 1195 2.417719 GCTTGTGGAGGTTGTAGTGAG 58.582 52.381 0.00 0.00 0.00 3.51
789 1196 2.224305 GCTTGTGGAGGTTGTAGTGAGT 60.224 50.000 0.00 0.00 0.00 3.41
790 1197 3.006537 GCTTGTGGAGGTTGTAGTGAGTA 59.993 47.826 0.00 0.00 0.00 2.59
791 1198 4.810790 CTTGTGGAGGTTGTAGTGAGTAG 58.189 47.826 0.00 0.00 0.00 2.57
792 1199 3.840991 TGTGGAGGTTGTAGTGAGTAGT 58.159 45.455 0.00 0.00 0.00 2.73
793 1200 3.825014 TGTGGAGGTTGTAGTGAGTAGTC 59.175 47.826 0.00 0.00 0.00 2.59
794 1201 4.080687 GTGGAGGTTGTAGTGAGTAGTCT 58.919 47.826 0.00 0.00 0.00 3.24
795 1202 4.523558 GTGGAGGTTGTAGTGAGTAGTCTT 59.476 45.833 0.00 0.00 0.00 3.01
796 1203 5.010820 GTGGAGGTTGTAGTGAGTAGTCTTT 59.989 44.000 0.00 0.00 0.00 2.52
797 1204 5.243283 TGGAGGTTGTAGTGAGTAGTCTTTC 59.757 44.000 0.00 0.00 0.00 2.62
798 1205 5.336610 GGAGGTTGTAGTGAGTAGTCTTTCC 60.337 48.000 0.00 0.00 0.00 3.13
799 1206 5.145564 AGGTTGTAGTGAGTAGTCTTTCCA 58.854 41.667 0.00 0.00 0.00 3.53
800 1207 5.244178 AGGTTGTAGTGAGTAGTCTTTCCAG 59.756 44.000 0.00 0.00 0.00 3.86
801 1208 5.010820 GGTTGTAGTGAGTAGTCTTTCCAGT 59.989 44.000 0.00 0.00 0.00 4.00
802 1209 5.707242 TGTAGTGAGTAGTCTTTCCAGTG 57.293 43.478 0.00 0.00 0.00 3.66
803 1210 5.138276 TGTAGTGAGTAGTCTTTCCAGTGT 58.862 41.667 0.00 0.00 0.00 3.55
804 1211 5.597182 TGTAGTGAGTAGTCTTTCCAGTGTT 59.403 40.000 0.00 0.00 0.00 3.32
805 1212 5.203060 AGTGAGTAGTCTTTCCAGTGTTC 57.797 43.478 0.00 0.00 0.00 3.18
806 1213 4.039366 AGTGAGTAGTCTTTCCAGTGTTCC 59.961 45.833 0.00 0.00 0.00 3.62
807 1214 3.323979 TGAGTAGTCTTTCCAGTGTTCCC 59.676 47.826 0.00 0.00 0.00 3.97
808 1215 2.638363 AGTAGTCTTTCCAGTGTTCCCC 59.362 50.000 0.00 0.00 0.00 4.81
809 1216 0.396811 AGTCTTTCCAGTGTTCCCCG 59.603 55.000 0.00 0.00 0.00 5.73
810 1217 0.108019 GTCTTTCCAGTGTTCCCCGT 59.892 55.000 0.00 0.00 0.00 5.28
811 1218 0.841289 TCTTTCCAGTGTTCCCCGTT 59.159 50.000 0.00 0.00 0.00 4.44
812 1219 0.951558 CTTTCCAGTGTTCCCCGTTG 59.048 55.000 0.00 0.00 0.00 4.10
813 1220 0.256464 TTTCCAGTGTTCCCCGTTGT 59.744 50.000 0.00 0.00 0.00 3.32
814 1221 1.129917 TTCCAGTGTTCCCCGTTGTA 58.870 50.000 0.00 0.00 0.00 2.41
815 1222 1.354101 TCCAGTGTTCCCCGTTGTAT 58.646 50.000 0.00 0.00 0.00 2.29
816 1223 1.276989 TCCAGTGTTCCCCGTTGTATC 59.723 52.381 0.00 0.00 0.00 2.24
820 1227 1.728425 GTGTTCCCCGTTGTATCGTTC 59.272 52.381 0.00 0.00 0.00 3.95
822 1229 1.997606 GTTCCCCGTTGTATCGTTCTG 59.002 52.381 0.00 0.00 0.00 3.02
833 1240 4.478699 TGTATCGTTCTGACCGTTGTAAG 58.521 43.478 0.00 0.00 0.00 2.34
834 1241 3.655276 ATCGTTCTGACCGTTGTAAGT 57.345 42.857 0.00 0.00 0.00 2.24
837 1244 2.861935 CGTTCTGACCGTTGTAAGTTGT 59.138 45.455 0.00 0.00 0.00 3.32
838 1245 3.307782 CGTTCTGACCGTTGTAAGTTGTT 59.692 43.478 0.00 0.00 0.00 2.83
839 1246 4.201744 CGTTCTGACCGTTGTAAGTTGTTT 60.202 41.667 0.00 0.00 0.00 2.83
840 1247 5.633927 GTTCTGACCGTTGTAAGTTGTTTT 58.366 37.500 0.00 0.00 0.00 2.43
841 1248 5.224562 TCTGACCGTTGTAAGTTGTTTTG 57.775 39.130 0.00 0.00 0.00 2.44
842 1249 4.696402 TCTGACCGTTGTAAGTTGTTTTGT 59.304 37.500 0.00 0.00 0.00 2.83
843 1250 4.972201 TGACCGTTGTAAGTTGTTTTGTC 58.028 39.130 0.00 0.00 0.00 3.18
844 1251 4.696402 TGACCGTTGTAAGTTGTTTTGTCT 59.304 37.500 0.00 0.00 0.00 3.41
846 1253 3.789224 CCGTTGTAAGTTGTTTTGTCTGC 59.211 43.478 0.00 0.00 0.00 4.26
847 1254 4.438200 CCGTTGTAAGTTGTTTTGTCTGCT 60.438 41.667 0.00 0.00 0.00 4.24
848 1255 4.495472 CGTTGTAAGTTGTTTTGTCTGCTG 59.505 41.667 0.00 0.00 0.00 4.41
851 1258 6.745159 TGTAAGTTGTTTTGTCTGCTGTAA 57.255 33.333 0.00 0.00 0.00 2.41
852 1259 7.328277 TGTAAGTTGTTTTGTCTGCTGTAAT 57.672 32.000 0.00 0.00 0.00 1.89
868 2682 1.676006 GTAATTCCTGGCCGGTTGATG 59.324 52.381 11.58 0.00 0.00 3.07
869 2683 0.684153 AATTCCTGGCCGGTTGATGG 60.684 55.000 11.58 0.00 0.00 3.51
897 2711 1.026718 ATTCAAAGCCGGGCTCTTCG 61.027 55.000 24.08 11.07 38.25 3.79
898 2712 3.804193 CAAAGCCGGGCTCTTCGC 61.804 66.667 24.08 0.00 38.25 4.70
1066 2880 0.240945 CATTGTGAACGAAGGCCCAC 59.759 55.000 0.00 0.00 0.00 4.61
1122 2936 2.267324 GCTCCTGCCACTGACTCC 59.733 66.667 0.00 0.00 0.00 3.85
1128 2942 2.360475 GCCACTGACTCCAAGCCC 60.360 66.667 0.00 0.00 0.00 5.19
1170 2984 2.046892 CCCGACACCAAGAGGCTG 60.047 66.667 0.00 0.00 39.06 4.85
1176 2990 0.972883 ACACCAAGAGGCTGAGAGAC 59.027 55.000 0.00 0.00 39.06 3.36
1276 3090 5.704978 GGCTTCAAAGTCTGATTCTTCTCTT 59.295 40.000 0.00 0.00 32.78 2.85
1279 3093 7.386299 GCTTCAAAGTCTGATTCTTCTCTTGTA 59.614 37.037 0.00 0.00 32.78 2.41
1385 3216 5.266242 GTTTAATGGTTAGCGAGCTTGATG 58.734 41.667 4.70 0.00 0.00 3.07
1513 3372 8.506168 TTCCTGATGTGGAAATTTGATAGTAC 57.494 34.615 0.00 0.00 42.51 2.73
1514 3373 7.054124 TCCTGATGTGGAAATTTGATAGTACC 58.946 38.462 0.00 0.00 32.39 3.34
1515 3374 6.017934 CCTGATGTGGAAATTTGATAGTACCG 60.018 42.308 0.00 0.00 0.00 4.02
1516 3375 5.820423 TGATGTGGAAATTTGATAGTACCGG 59.180 40.000 0.00 0.00 0.00 5.28
1517 3376 5.423704 TGTGGAAATTTGATAGTACCGGA 57.576 39.130 9.46 0.00 0.00 5.14
1518 3377 5.424757 TGTGGAAATTTGATAGTACCGGAG 58.575 41.667 9.46 0.00 0.00 4.63
1519 3378 5.046159 TGTGGAAATTTGATAGTACCGGAGT 60.046 40.000 9.46 0.00 0.00 3.85
1520 3379 6.154877 TGTGGAAATTTGATAGTACCGGAGTA 59.845 38.462 9.46 0.00 0.00 2.59
1557 3416 9.346725 GATATGGAAATTTCAGTGAAAACTGAC 57.653 33.333 21.57 11.72 45.32 3.51
1576 3439 8.627208 AACTGACAAGACAACATCAAGAATAT 57.373 30.769 0.00 0.00 0.00 1.28
1579 3442 9.591792 CTGACAAGACAACATCAAGAATATAGA 57.408 33.333 0.00 0.00 0.00 1.98
1641 3504 2.948115 TCCATGGCATAATCACCCTTG 58.052 47.619 6.96 0.00 0.00 3.61
1662 3525 5.832539 TGTTCTCTTCTCATCCTTTTCCT 57.167 39.130 0.00 0.00 0.00 3.36
1673 3536 3.025322 TCCTTTTCCTCAGCACCAAAA 57.975 42.857 0.00 0.00 0.00 2.44
1683 3546 2.622942 TCAGCACCAAAACAATCACTCC 59.377 45.455 0.00 0.00 0.00 3.85
1755 3622 5.272402 TCACTCTCTCCATCCATCTTACAA 58.728 41.667 0.00 0.00 0.00 2.41
1756 3623 5.127845 TCACTCTCTCCATCCATCTTACAAC 59.872 44.000 0.00 0.00 0.00 3.32
1757 3624 5.026121 ACTCTCTCCATCCATCTTACAACA 58.974 41.667 0.00 0.00 0.00 3.33
1758 3625 5.128499 ACTCTCTCCATCCATCTTACAACAG 59.872 44.000 0.00 0.00 0.00 3.16
1759 3626 5.026121 TCTCTCCATCCATCTTACAACAGT 58.974 41.667 0.00 0.00 0.00 3.55
1769 3639 5.048713 CCATCTTACAACAGTTTTCAGACCC 60.049 44.000 0.00 0.00 0.00 4.46
1837 4684 2.202919 CGGAGATCATGGCGTGCA 60.203 61.111 0.65 0.00 0.00 4.57
1902 4749 4.974438 ACCGCCTTCCCCACCTGA 62.974 66.667 0.00 0.00 0.00 3.86
1903 4750 4.101448 CCGCCTTCCCCACCTGAG 62.101 72.222 0.00 0.00 0.00 3.35
1904 4751 3.322466 CGCCTTCCCCACCTGAGT 61.322 66.667 0.00 0.00 0.00 3.41
1905 4752 1.987855 CGCCTTCCCCACCTGAGTA 60.988 63.158 0.00 0.00 0.00 2.59
1918 4765 4.402474 CCACCTGAGTAGTACATCATCACA 59.598 45.833 2.52 0.00 0.00 3.58
1922 4769 6.183360 ACCTGAGTAGTACATCATCACAATCC 60.183 42.308 2.52 0.00 0.00 3.01
1926 4773 6.577103 AGTAGTACATCATCACAATCCACAG 58.423 40.000 2.52 0.00 0.00 3.66
1928 4775 5.668471 AGTACATCATCACAATCCACAGAG 58.332 41.667 0.00 0.00 0.00 3.35
1930 4777 4.511527 ACATCATCACAATCCACAGAGAC 58.488 43.478 0.00 0.00 0.00 3.36
1933 4780 5.937975 TCATCACAATCCACAGAGACATA 57.062 39.130 0.00 0.00 0.00 2.29
1934 4781 6.298441 TCATCACAATCCACAGAGACATAA 57.702 37.500 0.00 0.00 0.00 1.90
1938 4785 6.533730 TCACAATCCACAGAGACATAAAAGT 58.466 36.000 0.00 0.00 0.00 2.66
1940 4787 7.041167 TCACAATCCACAGAGACATAAAAGTTG 60.041 37.037 0.00 0.00 0.00 3.16
1941 4788 6.998074 ACAATCCACAGAGACATAAAAGTTGA 59.002 34.615 0.00 0.00 0.00 3.18
1942 4789 7.041098 ACAATCCACAGAGACATAAAAGTTGAC 60.041 37.037 0.00 0.00 0.00 3.18
1943 4790 5.924356 TCCACAGAGACATAAAAGTTGACA 58.076 37.500 0.00 0.00 0.00 3.58
1946 4793 6.427853 CCACAGAGACATAAAAGTTGACATGA 59.572 38.462 0.00 0.00 0.00 3.07
1949 4796 7.933577 ACAGAGACATAAAAGTTGACATGAGAA 59.066 33.333 0.00 0.00 0.00 2.87
1950 4797 8.944029 CAGAGACATAAAAGTTGACATGAGAAT 58.056 33.333 0.00 0.00 0.00 2.40
1951 4798 8.944029 AGAGACATAAAAGTTGACATGAGAATG 58.056 33.333 0.00 0.00 0.00 2.67
1961 4808 1.233019 CATGAGAATGCGATCCACCC 58.767 55.000 0.00 0.00 0.00 4.61
1962 4809 0.839277 ATGAGAATGCGATCCACCCA 59.161 50.000 0.00 0.00 0.00 4.51
1963 4810 0.107703 TGAGAATGCGATCCACCCAC 60.108 55.000 0.00 0.00 0.00 4.61
1964 4811 0.179000 GAGAATGCGATCCACCCACT 59.821 55.000 0.00 0.00 0.00 4.00
1966 4813 1.718757 GAATGCGATCCACCCACTGC 61.719 60.000 0.00 0.00 0.00 4.40
1976 4823 3.818787 CCCACTGCGGAATGCTGC 61.819 66.667 0.00 0.00 45.63 5.25
2015 4866 1.680249 GGTGCTCACAAGGATTCCCTC 60.680 57.143 0.00 0.00 43.48 4.30
2016 4867 0.620556 TGCTCACAAGGATTCCCTCC 59.379 55.000 0.00 0.00 43.48 4.30
2031 4882 1.289160 CCTCCAGGTTGATGAAGGGA 58.711 55.000 0.00 0.00 0.00 4.20
2037 4888 1.916181 AGGTTGATGAAGGGATTCGGT 59.084 47.619 0.00 0.00 0.00 4.69
2066 4918 3.504906 TGTTGTACTCGACGATCTTCCTT 59.495 43.478 0.00 0.00 0.00 3.36
2104 4957 3.017442 GTGGCCTGGAGATAAAAGGAAC 58.983 50.000 3.32 0.00 32.43 3.62
2108 4961 4.567747 GGCCTGGAGATAAAAGGAACTGAA 60.568 45.833 0.00 0.00 40.86 3.02
2109 4962 5.196695 GCCTGGAGATAAAAGGAACTGAAT 58.803 41.667 0.00 0.00 40.86 2.57
2110 4963 5.067023 GCCTGGAGATAAAAGGAACTGAATG 59.933 44.000 0.00 0.00 40.86 2.67
2111 4964 6.418101 CCTGGAGATAAAAGGAACTGAATGA 58.582 40.000 0.00 0.00 40.86 2.57
2112 4965 6.886459 CCTGGAGATAAAAGGAACTGAATGAA 59.114 38.462 0.00 0.00 40.86 2.57
2113 4966 7.394359 CCTGGAGATAAAAGGAACTGAATGAAA 59.606 37.037 0.00 0.00 40.86 2.69
2114 4967 8.340618 TGGAGATAAAAGGAACTGAATGAAAG 57.659 34.615 0.00 0.00 40.86 2.62
2115 4968 7.944554 TGGAGATAAAAGGAACTGAATGAAAGT 59.055 33.333 0.00 0.00 40.86 2.66
2116 4969 8.797438 GGAGATAAAAGGAACTGAATGAAAGTT 58.203 33.333 0.00 0.00 40.86 2.66
2122 4975 6.319141 AGGAACTGAATGAAAGTTACTTGC 57.681 37.500 0.00 0.00 44.79 4.01
2123 4976 5.241728 AGGAACTGAATGAAAGTTACTTGCC 59.758 40.000 0.00 0.00 44.79 4.52
2124 4977 5.009610 GGAACTGAATGAAAGTTACTTGCCA 59.990 40.000 0.00 0.62 37.98 4.92
2125 4978 5.695851 ACTGAATGAAAGTTACTTGCCAG 57.304 39.130 0.00 2.52 0.00 4.85
2126 4979 4.520492 ACTGAATGAAAGTTACTTGCCAGG 59.480 41.667 10.93 0.00 0.00 4.45
2127 4980 4.469657 TGAATGAAAGTTACTTGCCAGGT 58.530 39.130 0.00 0.00 0.00 4.00
2128 4981 4.278170 TGAATGAAAGTTACTTGCCAGGTG 59.722 41.667 0.00 0.00 0.00 4.00
2129 4982 3.569194 TGAAAGTTACTTGCCAGGTGA 57.431 42.857 0.00 0.00 0.00 4.02
2130 4983 3.211045 TGAAAGTTACTTGCCAGGTGAC 58.789 45.455 0.00 0.00 0.00 3.67
2131 4984 3.211045 GAAAGTTACTTGCCAGGTGACA 58.789 45.455 4.74 0.00 0.00 3.58
2132 4985 2.256117 AGTTACTTGCCAGGTGACAC 57.744 50.000 4.74 0.00 0.00 3.67
2133 4986 1.768870 AGTTACTTGCCAGGTGACACT 59.231 47.619 5.39 0.00 0.00 3.55
2134 4987 1.873591 GTTACTTGCCAGGTGACACTG 59.126 52.381 5.39 2.10 38.21 3.66
2145 4998 4.504858 CAGGTGACACTGGTAATACTTCC 58.495 47.826 5.39 0.00 34.84 3.46
2146 4999 4.223032 CAGGTGACACTGGTAATACTTCCT 59.777 45.833 5.39 0.00 34.84 3.36
2147 5000 4.223032 AGGTGACACTGGTAATACTTCCTG 59.777 45.833 5.39 0.00 0.00 3.86
2148 5001 4.020485 GGTGACACTGGTAATACTTCCTGT 60.020 45.833 5.39 0.00 36.57 4.00
2149 5002 5.169295 GTGACACTGGTAATACTTCCTGTC 58.831 45.833 0.00 0.00 34.52 3.51
2150 5003 4.836175 TGACACTGGTAATACTTCCTGTCA 59.164 41.667 8.54 8.54 36.92 3.58
2151 5004 5.483937 TGACACTGGTAATACTTCCTGTCAT 59.516 40.000 8.54 0.00 35.49 3.06
2152 5005 6.013725 TGACACTGGTAATACTTCCTGTCATT 60.014 38.462 8.54 0.00 35.49 2.57
2153 5006 6.173339 ACACTGGTAATACTTCCTGTCATTG 58.827 40.000 0.00 0.00 34.52 2.82
2154 5007 6.173339 CACTGGTAATACTTCCTGTCATTGT 58.827 40.000 0.00 0.00 34.52 2.71
2155 5008 6.092670 CACTGGTAATACTTCCTGTCATTGTG 59.907 42.308 0.00 0.00 34.52 3.33
2156 5009 4.941263 TGGTAATACTTCCTGTCATTGTGC 59.059 41.667 0.00 0.00 0.00 4.57
2157 5010 5.186198 GGTAATACTTCCTGTCATTGTGCT 58.814 41.667 0.00 0.00 0.00 4.40
2158 5011 6.070481 TGGTAATACTTCCTGTCATTGTGCTA 60.070 38.462 0.00 0.00 0.00 3.49
2159 5012 6.258068 GGTAATACTTCCTGTCATTGTGCTAC 59.742 42.308 0.00 0.00 0.00 3.58
2160 5013 5.683876 ATACTTCCTGTCATTGTGCTACT 57.316 39.130 0.00 0.00 0.00 2.57
2161 5014 3.668447 ACTTCCTGTCATTGTGCTACTG 58.332 45.455 0.00 0.00 0.00 2.74
2162 5015 3.071602 ACTTCCTGTCATTGTGCTACTGT 59.928 43.478 0.00 0.00 0.00 3.55
2163 5016 3.044235 TCCTGTCATTGTGCTACTGTG 57.956 47.619 0.00 0.00 0.00 3.66
2164 5017 2.632512 TCCTGTCATTGTGCTACTGTGA 59.367 45.455 0.00 0.00 0.00 3.58
2165 5018 2.738846 CCTGTCATTGTGCTACTGTGAC 59.261 50.000 12.70 12.70 39.58 3.67
2166 5019 2.403259 TGTCATTGTGCTACTGTGACG 58.597 47.619 13.71 0.00 41.45 4.35
2167 5020 1.726791 GTCATTGTGCTACTGTGACGG 59.273 52.381 0.00 0.00 31.15 4.79
2168 5021 1.343142 TCATTGTGCTACTGTGACGGT 59.657 47.619 1.37 1.37 0.00 4.83
2169 5022 2.559231 TCATTGTGCTACTGTGACGGTA 59.441 45.455 3.97 3.97 0.00 4.02
2170 5023 3.006003 TCATTGTGCTACTGTGACGGTAA 59.994 43.478 5.69 0.00 0.00 2.85
2171 5024 3.671008 TTGTGCTACTGTGACGGTAAT 57.329 42.857 5.69 0.00 0.00 1.89
2172 5025 3.226346 TGTGCTACTGTGACGGTAATC 57.774 47.619 5.69 1.69 0.00 1.75
2173 5026 2.559231 TGTGCTACTGTGACGGTAATCA 59.441 45.455 5.69 4.21 0.00 2.57
2174 5027 3.194755 TGTGCTACTGTGACGGTAATCAT 59.805 43.478 5.69 0.00 0.00 2.45
2175 5028 4.399934 TGTGCTACTGTGACGGTAATCATA 59.600 41.667 5.69 2.91 0.00 2.15
2176 5029 4.976731 GTGCTACTGTGACGGTAATCATAG 59.023 45.833 5.69 0.00 42.02 2.23
2177 5030 4.885325 TGCTACTGTGACGGTAATCATAGA 59.115 41.667 5.69 0.00 39.50 1.98
2178 5031 5.535030 TGCTACTGTGACGGTAATCATAGAT 59.465 40.000 5.69 0.00 39.50 1.98
2179 5032 6.040504 TGCTACTGTGACGGTAATCATAGATT 59.959 38.462 5.69 0.00 39.50 2.40
2180 5033 6.924060 GCTACTGTGACGGTAATCATAGATTT 59.076 38.462 5.69 0.00 39.50 2.17
2181 5034 7.438459 GCTACTGTGACGGTAATCATAGATTTT 59.562 37.037 5.69 0.00 39.50 1.82
2182 5035 7.772332 ACTGTGACGGTAATCATAGATTTTC 57.228 36.000 0.00 0.00 39.50 2.29
2183 5036 7.556844 ACTGTGACGGTAATCATAGATTTTCT 58.443 34.615 0.00 0.00 39.50 2.52
2184 5037 8.041323 ACTGTGACGGTAATCATAGATTTTCTT 58.959 33.333 0.00 0.00 39.50 2.52
2185 5038 8.420374 TGTGACGGTAATCATAGATTTTCTTC 57.580 34.615 0.00 0.00 0.00 2.87
2186 5039 8.258007 TGTGACGGTAATCATAGATTTTCTTCT 58.742 33.333 0.00 0.00 0.00 2.85
2187 5040 9.099454 GTGACGGTAATCATAGATTTTCTTCTT 57.901 33.333 0.00 0.00 0.00 2.52
2188 5041 9.314321 TGACGGTAATCATAGATTTTCTTCTTC 57.686 33.333 0.00 0.00 0.00 2.87
2189 5042 9.535878 GACGGTAATCATAGATTTTCTTCTTCT 57.464 33.333 0.00 0.00 0.00 2.85
2190 5043 9.319143 ACGGTAATCATAGATTTTCTTCTTCTG 57.681 33.333 0.00 0.00 0.00 3.02
2191 5044 8.768955 CGGTAATCATAGATTTTCTTCTTCTGG 58.231 37.037 0.00 0.00 0.00 3.86
2192 5045 8.563732 GGTAATCATAGATTTTCTTCTTCTGGC 58.436 37.037 0.00 0.00 0.00 4.85
2193 5046 6.857777 ATCATAGATTTTCTTCTTCTGGCG 57.142 37.500 0.00 0.00 0.00 5.69
2194 5047 4.572389 TCATAGATTTTCTTCTTCTGGCGC 59.428 41.667 0.00 0.00 0.00 6.53
2195 5048 3.064900 AGATTTTCTTCTTCTGGCGCT 57.935 42.857 7.64 0.00 0.00 5.92
2196 5049 3.006247 AGATTTTCTTCTTCTGGCGCTC 58.994 45.455 7.64 0.00 0.00 5.03
2197 5050 2.550830 TTTTCTTCTTCTGGCGCTCT 57.449 45.000 7.64 0.00 0.00 4.09
2198 5051 1.800805 TTTCTTCTTCTGGCGCTCTG 58.199 50.000 7.64 1.60 0.00 3.35
2199 5052 0.671781 TTCTTCTTCTGGCGCTCTGC 60.672 55.000 7.64 0.00 45.38 4.26
2200 5053 1.079266 CTTCTTCTGGCGCTCTGCT 60.079 57.895 7.64 0.00 45.43 4.24
2201 5054 1.079543 TTCTTCTGGCGCTCTGCTC 60.080 57.895 7.64 0.00 45.43 4.26
2202 5055 1.539560 TTCTTCTGGCGCTCTGCTCT 61.540 55.000 7.64 0.00 45.43 4.09
2203 5056 1.810441 CTTCTGGCGCTCTGCTCTG 60.810 63.158 7.64 0.00 45.43 3.35
2204 5057 2.223200 CTTCTGGCGCTCTGCTCTGA 62.223 60.000 7.64 0.00 45.43 3.27
2205 5058 1.820010 TTCTGGCGCTCTGCTCTGAA 61.820 55.000 7.64 2.20 45.43 3.02
2206 5059 1.375140 CTGGCGCTCTGCTCTGAAA 60.375 57.895 7.64 0.00 45.43 2.69
2207 5060 1.360194 CTGGCGCTCTGCTCTGAAAG 61.360 60.000 7.64 0.00 45.43 2.62
2222 5075 4.170292 CTGAAAGCCAGAACAATGGAAG 57.830 45.455 0.00 0.00 45.78 3.46
2223 5076 2.892852 TGAAAGCCAGAACAATGGAAGG 59.107 45.455 0.00 0.00 43.57 3.46
2224 5077 2.978156 AAGCCAGAACAATGGAAGGA 57.022 45.000 0.00 0.00 43.57 3.36
2225 5078 2.978156 AGCCAGAACAATGGAAGGAA 57.022 45.000 0.00 0.00 43.57 3.36
2226 5079 3.243359 AGCCAGAACAATGGAAGGAAA 57.757 42.857 0.00 0.00 43.57 3.13
2227 5080 3.160269 AGCCAGAACAATGGAAGGAAAG 58.840 45.455 0.00 0.00 43.57 2.62
2228 5081 2.353109 GCCAGAACAATGGAAGGAAAGC 60.353 50.000 0.00 0.00 43.57 3.51
2229 5082 3.160269 CCAGAACAATGGAAGGAAAGCT 58.840 45.455 0.00 0.00 43.57 3.74
2230 5083 4.335416 CCAGAACAATGGAAGGAAAGCTA 58.665 43.478 0.00 0.00 43.57 3.32
2231 5084 4.156739 CCAGAACAATGGAAGGAAAGCTAC 59.843 45.833 0.00 0.00 43.57 3.58
2232 5085 4.156739 CAGAACAATGGAAGGAAAGCTACC 59.843 45.833 2.08 2.08 0.00 3.18
2233 5086 3.806949 ACAATGGAAGGAAAGCTACCA 57.193 42.857 11.59 0.00 35.09 3.25
2234 5087 4.322057 ACAATGGAAGGAAAGCTACCAT 57.678 40.909 11.59 0.00 42.17 3.55
2235 5088 5.450818 ACAATGGAAGGAAAGCTACCATA 57.549 39.130 11.59 0.00 39.93 2.74
2236 5089 5.193679 ACAATGGAAGGAAAGCTACCATAC 58.806 41.667 11.59 2.20 39.93 2.39
2237 5090 5.044846 ACAATGGAAGGAAAGCTACCATACT 60.045 40.000 11.59 0.00 39.93 2.12
2238 5091 4.487714 TGGAAGGAAAGCTACCATACTG 57.512 45.455 11.59 0.00 0.00 2.74
2239 5092 3.199946 TGGAAGGAAAGCTACCATACTGG 59.800 47.826 11.59 0.00 45.02 4.00
2240 5093 3.433740 GGAAGGAAAGCTACCATACTGGG 60.434 52.174 11.59 0.00 43.37 4.45
2241 5094 2.846950 AGGAAAGCTACCATACTGGGT 58.153 47.619 11.59 0.00 43.37 4.51
2242 5095 3.190439 AGGAAAGCTACCATACTGGGTT 58.810 45.455 11.59 0.00 43.37 4.11
2243 5096 3.200165 AGGAAAGCTACCATACTGGGTTC 59.800 47.826 11.59 0.00 43.37 3.62
2244 5097 3.542648 GAAAGCTACCATACTGGGTTCC 58.457 50.000 0.00 0.00 43.37 3.62
2245 5098 1.508256 AGCTACCATACTGGGTTCCC 58.492 55.000 0.12 0.12 43.37 3.97
2246 5099 1.209621 GCTACCATACTGGGTTCCCA 58.790 55.000 10.37 10.37 43.37 4.37
2247 5100 1.562475 GCTACCATACTGGGTTCCCAA 59.438 52.381 11.94 0.00 43.37 4.12
2248 5101 2.174854 GCTACCATACTGGGTTCCCAAT 59.825 50.000 11.94 4.47 43.37 3.16
2249 5102 2.826674 ACCATACTGGGTTCCCAATG 57.173 50.000 11.94 12.55 43.37 2.82
2250 5103 1.341976 ACCATACTGGGTTCCCAATGC 60.342 52.381 11.94 0.00 43.37 3.56
2251 5104 1.063717 CCATACTGGGTTCCCAATGCT 60.064 52.381 11.94 0.00 35.46 3.79
2252 5105 2.174639 CCATACTGGGTTCCCAATGCTA 59.825 50.000 11.94 0.42 35.46 3.49
2253 5106 3.214328 CATACTGGGTTCCCAATGCTAC 58.786 50.000 11.94 0.00 35.46 3.58
2254 5107 1.072266 ACTGGGTTCCCAATGCTACA 58.928 50.000 11.94 0.00 35.46 2.74
2255 5108 1.271926 ACTGGGTTCCCAATGCTACAC 60.272 52.381 11.94 0.00 35.46 2.90
2256 5109 0.774276 TGGGTTCCCAATGCTACACA 59.226 50.000 8.26 0.00 32.48 3.72
2257 5110 1.173913 GGGTTCCCAATGCTACACAC 58.826 55.000 2.59 0.00 0.00 3.82
2258 5111 1.546773 GGGTTCCCAATGCTACACACA 60.547 52.381 2.59 0.00 0.00 3.72
2259 5112 1.539827 GGTTCCCAATGCTACACACAC 59.460 52.381 0.00 0.00 0.00 3.82
2260 5113 2.504367 GTTCCCAATGCTACACACACT 58.496 47.619 0.00 0.00 0.00 3.55
2261 5114 2.472695 TCCCAATGCTACACACACTC 57.527 50.000 0.00 0.00 0.00 3.51
2262 5115 1.696884 TCCCAATGCTACACACACTCA 59.303 47.619 0.00 0.00 0.00 3.41
2263 5116 1.806542 CCCAATGCTACACACACTCAC 59.193 52.381 0.00 0.00 0.00 3.51
2264 5117 1.806542 CCAATGCTACACACACTCACC 59.193 52.381 0.00 0.00 0.00 4.02
2265 5118 1.460743 CAATGCTACACACACTCACCG 59.539 52.381 0.00 0.00 0.00 4.94
2266 5119 0.037326 ATGCTACACACACTCACCGG 60.037 55.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 112 2.668550 GCCGTCCGTGCCTCTTTT 60.669 61.111 0.00 0.00 0.00 2.27
108 113 4.699522 GGCCGTCCGTGCCTCTTT 62.700 66.667 10.62 0.00 45.70 2.52
287 305 1.802880 CGGGGACTAAACAGAGATGCG 60.803 57.143 0.00 0.00 0.00 4.73
337 369 8.891671 ACAACAAAAAGACTAAACCGAGTATA 57.108 30.769 0.00 0.00 0.00 1.47
339 371 7.464444 CGAACAACAAAAAGACTAAACCGAGTA 60.464 37.037 0.00 0.00 0.00 2.59
340 372 6.505044 AACAACAAAAAGACTAAACCGAGT 57.495 33.333 0.00 0.00 0.00 4.18
341 373 5.675444 CGAACAACAAAAAGACTAAACCGAG 59.325 40.000 0.00 0.00 0.00 4.63
342 374 5.561993 CGAACAACAAAAAGACTAAACCGA 58.438 37.500 0.00 0.00 0.00 4.69
343 375 4.203563 GCGAACAACAAAAAGACTAAACCG 59.796 41.667 0.00 0.00 0.00 4.44
344 376 5.337554 AGCGAACAACAAAAAGACTAAACC 58.662 37.500 0.00 0.00 0.00 3.27
347 379 7.876896 AAAAAGCGAACAACAAAAAGACTAA 57.123 28.000 0.00 0.00 0.00 2.24
368 400 5.067936 TCGAAGGCCTAAATCAACACAAAAA 59.932 36.000 5.16 0.00 0.00 1.94
369 401 4.580995 TCGAAGGCCTAAATCAACACAAAA 59.419 37.500 5.16 0.00 0.00 2.44
370 402 4.138290 TCGAAGGCCTAAATCAACACAAA 58.862 39.130 5.16 0.00 0.00 2.83
371 403 3.745799 TCGAAGGCCTAAATCAACACAA 58.254 40.909 5.16 0.00 0.00 3.33
372 404 3.244422 ACTCGAAGGCCTAAATCAACACA 60.244 43.478 5.16 0.00 0.00 3.72
373 405 3.335579 ACTCGAAGGCCTAAATCAACAC 58.664 45.455 5.16 0.00 0.00 3.32
374 406 3.695830 ACTCGAAGGCCTAAATCAACA 57.304 42.857 5.16 0.00 0.00 3.33
399 431 3.452627 AGATAACCACGAAGATCCTGCTT 59.547 43.478 0.00 0.00 0.00 3.91
408 452 3.510388 TGAGCAGAGATAACCACGAAG 57.490 47.619 0.00 0.00 0.00 3.79
684 1018 9.994432 GAAATATTATGTTGTCCTCTGAACTTG 57.006 33.333 0.00 0.00 0.00 3.16
710 1117 5.478332 TCCACACTAGGATCATATGTAGCAG 59.522 44.000 1.90 0.00 31.23 4.24
711 1118 5.393866 TCCACACTAGGATCATATGTAGCA 58.606 41.667 1.90 0.00 31.23 3.49
712 1119 5.478679 ACTCCACACTAGGATCATATGTAGC 59.521 44.000 1.90 0.00 36.99 3.58
713 1120 6.571344 GCACTCCACACTAGGATCATATGTAG 60.571 46.154 1.90 0.00 36.99 2.74
714 1121 5.243954 GCACTCCACACTAGGATCATATGTA 59.756 44.000 1.90 0.00 36.99 2.29
715 1122 4.039730 GCACTCCACACTAGGATCATATGT 59.960 45.833 1.90 0.00 36.99 2.29
716 1123 4.282957 AGCACTCCACACTAGGATCATATG 59.717 45.833 0.00 0.00 36.99 1.78
717 1124 4.487804 AGCACTCCACACTAGGATCATAT 58.512 43.478 0.00 0.00 36.99 1.78
718 1125 3.891977 GAGCACTCCACACTAGGATCATA 59.108 47.826 0.00 0.00 36.99 2.15
719 1126 2.697751 GAGCACTCCACACTAGGATCAT 59.302 50.000 0.00 0.00 36.99 2.45
720 1127 2.103373 GAGCACTCCACACTAGGATCA 58.897 52.381 0.00 0.00 36.99 2.92
721 1128 1.066303 CGAGCACTCCACACTAGGATC 59.934 57.143 0.00 0.00 36.99 3.36
722 1129 1.107114 CGAGCACTCCACACTAGGAT 58.893 55.000 0.00 0.00 36.99 3.24
723 1130 0.965866 CCGAGCACTCCACACTAGGA 60.966 60.000 0.00 0.00 36.00 2.94
724 1131 1.513158 CCGAGCACTCCACACTAGG 59.487 63.158 0.00 0.00 0.00 3.02
725 1132 1.153745 GCCGAGCACTCCACACTAG 60.154 63.158 0.00 0.00 0.00 2.57
726 1133 2.646175 GGCCGAGCACTCCACACTA 61.646 63.158 0.00 0.00 0.00 2.74
727 1134 4.008933 GGCCGAGCACTCCACACT 62.009 66.667 0.00 0.00 0.00 3.55
728 1135 3.537206 AAGGCCGAGCACTCCACAC 62.537 63.158 0.00 0.00 0.00 3.82
729 1136 1.476845 TAAAGGCCGAGCACTCCACA 61.477 55.000 0.00 0.00 0.00 4.17
730 1137 1.019805 GTAAAGGCCGAGCACTCCAC 61.020 60.000 0.00 0.00 0.00 4.02
731 1138 1.192146 AGTAAAGGCCGAGCACTCCA 61.192 55.000 0.00 0.00 0.00 3.86
732 1139 0.822164 TAGTAAAGGCCGAGCACTCC 59.178 55.000 0.00 0.00 0.00 3.85
733 1140 1.803252 GCTAGTAAAGGCCGAGCACTC 60.803 57.143 0.00 0.00 33.26 3.51
734 1141 0.175989 GCTAGTAAAGGCCGAGCACT 59.824 55.000 0.00 2.11 33.26 4.40
735 1142 0.175989 AGCTAGTAAAGGCCGAGCAC 59.824 55.000 0.00 0.00 35.55 4.40
736 1143 0.175760 CAGCTAGTAAAGGCCGAGCA 59.824 55.000 0.00 0.00 35.55 4.26
737 1144 0.175989 ACAGCTAGTAAAGGCCGAGC 59.824 55.000 0.00 0.64 0.00 5.03
738 1145 3.795623 TTACAGCTAGTAAAGGCCGAG 57.204 47.619 0.00 0.00 39.66 4.63
739 1146 3.958798 AGATTACAGCTAGTAAAGGCCGA 59.041 43.478 11.18 0.00 45.25 5.54
740 1147 4.323553 AGATTACAGCTAGTAAAGGCCG 57.676 45.455 11.18 0.00 45.25 6.13
741 1148 6.374613 ACAAAAGATTACAGCTAGTAAAGGCC 59.625 38.462 11.18 0.00 45.25 5.19
742 1149 7.244192 CACAAAAGATTACAGCTAGTAAAGGC 58.756 38.462 11.18 6.11 45.25 4.35
743 1150 7.626452 GCCACAAAAGATTACAGCTAGTAAAGG 60.626 40.741 11.18 0.00 45.25 3.11
744 1151 7.119846 AGCCACAAAAGATTACAGCTAGTAAAG 59.880 37.037 11.18 0.00 45.25 1.85
745 1152 6.940298 AGCCACAAAAGATTACAGCTAGTAAA 59.060 34.615 11.18 0.00 45.25 2.01
746 1153 6.472887 AGCCACAAAAGATTACAGCTAGTAA 58.527 36.000 10.01 10.01 46.10 2.24
747 1154 6.049955 AGCCACAAAAGATTACAGCTAGTA 57.950 37.500 0.00 0.00 0.00 1.82
748 1155 4.911390 AGCCACAAAAGATTACAGCTAGT 58.089 39.130 0.00 0.00 0.00 2.57
749 1156 5.182001 ACAAGCCACAAAAGATTACAGCTAG 59.818 40.000 0.00 0.00 0.00 3.42
750 1157 5.048782 CACAAGCCACAAAAGATTACAGCTA 60.049 40.000 0.00 0.00 0.00 3.32
751 1158 3.891366 ACAAGCCACAAAAGATTACAGCT 59.109 39.130 0.00 0.00 0.00 4.24
752 1159 3.983344 CACAAGCCACAAAAGATTACAGC 59.017 43.478 0.00 0.00 0.00 4.40
753 1160 4.278170 TCCACAAGCCACAAAAGATTACAG 59.722 41.667 0.00 0.00 0.00 2.74
754 1161 4.211125 TCCACAAGCCACAAAAGATTACA 58.789 39.130 0.00 0.00 0.00 2.41
755 1162 4.321230 CCTCCACAAGCCACAAAAGATTAC 60.321 45.833 0.00 0.00 0.00 1.89
756 1163 3.826157 CCTCCACAAGCCACAAAAGATTA 59.174 43.478 0.00 0.00 0.00 1.75
757 1164 2.629617 CCTCCACAAGCCACAAAAGATT 59.370 45.455 0.00 0.00 0.00 2.40
758 1165 2.242043 CCTCCACAAGCCACAAAAGAT 58.758 47.619 0.00 0.00 0.00 2.40
759 1166 1.064017 ACCTCCACAAGCCACAAAAGA 60.064 47.619 0.00 0.00 0.00 2.52
760 1167 1.402787 ACCTCCACAAGCCACAAAAG 58.597 50.000 0.00 0.00 0.00 2.27
761 1168 1.480137 CAACCTCCACAAGCCACAAAA 59.520 47.619 0.00 0.00 0.00 2.44
762 1169 1.110442 CAACCTCCACAAGCCACAAA 58.890 50.000 0.00 0.00 0.00 2.83
763 1170 0.033601 ACAACCTCCACAAGCCACAA 60.034 50.000 0.00 0.00 0.00 3.33
764 1171 0.840617 TACAACCTCCACAAGCCACA 59.159 50.000 0.00 0.00 0.00 4.17
765 1172 1.202770 ACTACAACCTCCACAAGCCAC 60.203 52.381 0.00 0.00 0.00 5.01
766 1173 1.136828 ACTACAACCTCCACAAGCCA 58.863 50.000 0.00 0.00 0.00 4.75
767 1174 1.071699 TCACTACAACCTCCACAAGCC 59.928 52.381 0.00 0.00 0.00 4.35
768 1175 2.224305 ACTCACTACAACCTCCACAAGC 60.224 50.000 0.00 0.00 0.00 4.01
769 1176 3.753294 ACTCACTACAACCTCCACAAG 57.247 47.619 0.00 0.00 0.00 3.16
770 1177 4.220724 ACTACTCACTACAACCTCCACAA 58.779 43.478 0.00 0.00 0.00 3.33
771 1178 3.825014 GACTACTCACTACAACCTCCACA 59.175 47.826 0.00 0.00 0.00 4.17
772 1179 4.080687 AGACTACTCACTACAACCTCCAC 58.919 47.826 0.00 0.00 0.00 4.02
773 1180 4.383931 AGACTACTCACTACAACCTCCA 57.616 45.455 0.00 0.00 0.00 3.86
774 1181 5.336610 GGAAAGACTACTCACTACAACCTCC 60.337 48.000 0.00 0.00 0.00 4.30
775 1182 5.243283 TGGAAAGACTACTCACTACAACCTC 59.757 44.000 0.00 0.00 0.00 3.85
776 1183 5.145564 TGGAAAGACTACTCACTACAACCT 58.854 41.667 0.00 0.00 0.00 3.50
777 1184 5.010820 ACTGGAAAGACTACTCACTACAACC 59.989 44.000 0.00 0.00 0.00 3.77
778 1185 5.921408 CACTGGAAAGACTACTCACTACAAC 59.079 44.000 0.00 0.00 0.00 3.32
779 1186 5.597182 ACACTGGAAAGACTACTCACTACAA 59.403 40.000 0.00 0.00 0.00 2.41
780 1187 5.138276 ACACTGGAAAGACTACTCACTACA 58.862 41.667 0.00 0.00 0.00 2.74
781 1188 5.708877 ACACTGGAAAGACTACTCACTAC 57.291 43.478 0.00 0.00 0.00 2.73
782 1189 5.243283 GGAACACTGGAAAGACTACTCACTA 59.757 44.000 0.00 0.00 0.00 2.74
783 1190 4.039366 GGAACACTGGAAAGACTACTCACT 59.961 45.833 0.00 0.00 0.00 3.41
784 1191 4.308265 GGAACACTGGAAAGACTACTCAC 58.692 47.826 0.00 0.00 0.00 3.51
785 1192 3.323979 GGGAACACTGGAAAGACTACTCA 59.676 47.826 0.00 0.00 0.00 3.41
786 1193 3.306849 GGGGAACACTGGAAAGACTACTC 60.307 52.174 0.00 0.00 0.00 2.59
787 1194 2.638363 GGGGAACACTGGAAAGACTACT 59.362 50.000 0.00 0.00 0.00 2.57
788 1195 2.612221 CGGGGAACACTGGAAAGACTAC 60.612 54.545 0.00 0.00 0.00 2.73
789 1196 1.621814 CGGGGAACACTGGAAAGACTA 59.378 52.381 0.00 0.00 0.00 2.59
790 1197 0.396811 CGGGGAACACTGGAAAGACT 59.603 55.000 0.00 0.00 0.00 3.24
791 1198 0.108019 ACGGGGAACACTGGAAAGAC 59.892 55.000 0.00 0.00 0.00 3.01
792 1199 0.841289 AACGGGGAACACTGGAAAGA 59.159 50.000 0.00 0.00 0.00 2.52
793 1200 0.951558 CAACGGGGAACACTGGAAAG 59.048 55.000 0.00 0.00 0.00 2.62
794 1201 0.256464 ACAACGGGGAACACTGGAAA 59.744 50.000 0.00 0.00 0.00 3.13
795 1202 1.129917 TACAACGGGGAACACTGGAA 58.870 50.000 0.00 0.00 0.00 3.53
796 1203 1.276989 GATACAACGGGGAACACTGGA 59.723 52.381 0.00 0.00 0.00 3.86
797 1204 1.734163 GATACAACGGGGAACACTGG 58.266 55.000 0.00 0.00 0.00 4.00
798 1205 1.337447 ACGATACAACGGGGAACACTG 60.337 52.381 0.00 0.00 37.61 3.66
799 1206 0.971386 ACGATACAACGGGGAACACT 59.029 50.000 0.00 0.00 37.61 3.55
800 1207 1.728425 GAACGATACAACGGGGAACAC 59.272 52.381 0.00 0.00 37.61 3.32
801 1208 1.619827 AGAACGATACAACGGGGAACA 59.380 47.619 0.00 0.00 37.61 3.18
802 1209 1.997606 CAGAACGATACAACGGGGAAC 59.002 52.381 0.00 0.00 37.61 3.62
803 1210 1.894466 TCAGAACGATACAACGGGGAA 59.106 47.619 0.00 0.00 37.61 3.97
804 1211 1.203052 GTCAGAACGATACAACGGGGA 59.797 52.381 0.00 0.00 37.61 4.81
805 1212 1.636988 GTCAGAACGATACAACGGGG 58.363 55.000 0.00 0.00 37.61 5.73
806 1213 1.636988 GGTCAGAACGATACAACGGG 58.363 55.000 0.00 0.00 37.61 5.28
807 1214 1.265568 CGGTCAGAACGATACAACGG 58.734 55.000 0.00 0.00 37.61 4.44
808 1215 1.973138 ACGGTCAGAACGATACAACG 58.027 50.000 16.66 0.00 39.31 4.10
809 1216 3.054878 ACAACGGTCAGAACGATACAAC 58.945 45.455 16.66 0.00 34.93 3.32
810 1217 3.374220 ACAACGGTCAGAACGATACAA 57.626 42.857 16.66 0.00 34.93 2.41
811 1218 4.022935 ACTTACAACGGTCAGAACGATACA 60.023 41.667 16.66 0.00 34.93 2.29
812 1219 4.479619 ACTTACAACGGTCAGAACGATAC 58.520 43.478 16.66 0.00 34.93 2.24
813 1220 4.771590 ACTTACAACGGTCAGAACGATA 57.228 40.909 16.66 0.83 34.93 2.92
814 1221 3.655276 ACTTACAACGGTCAGAACGAT 57.345 42.857 16.66 0.00 34.93 3.73
815 1222 3.117794 CAACTTACAACGGTCAGAACGA 58.882 45.455 16.66 0.00 34.93 3.85
816 1223 2.861935 ACAACTTACAACGGTCAGAACG 59.138 45.455 6.24 6.24 37.36 3.95
820 1227 4.976987 ACAAAACAACTTACAACGGTCAG 58.023 39.130 0.00 0.00 0.00 3.51
822 1229 5.025826 CAGACAAAACAACTTACAACGGTC 58.974 41.667 0.00 0.00 0.00 4.79
833 1240 5.687285 CAGGAATTACAGCAGACAAAACAAC 59.313 40.000 0.00 0.00 0.00 3.32
834 1241 5.221224 CCAGGAATTACAGCAGACAAAACAA 60.221 40.000 0.00 0.00 0.00 2.83
837 1244 3.255642 GCCAGGAATTACAGCAGACAAAA 59.744 43.478 0.00 0.00 0.00 2.44
838 1245 2.819608 GCCAGGAATTACAGCAGACAAA 59.180 45.455 0.00 0.00 0.00 2.83
839 1246 2.436417 GCCAGGAATTACAGCAGACAA 58.564 47.619 0.00 0.00 0.00 3.18
840 1247 1.340017 GGCCAGGAATTACAGCAGACA 60.340 52.381 0.00 0.00 0.00 3.41
841 1248 1.383523 GGCCAGGAATTACAGCAGAC 58.616 55.000 0.00 0.00 0.00 3.51
842 1249 0.107703 CGGCCAGGAATTACAGCAGA 60.108 55.000 2.24 0.00 0.00 4.26
843 1250 1.097547 CCGGCCAGGAATTACAGCAG 61.098 60.000 2.24 1.14 45.00 4.24
844 1251 1.077787 CCGGCCAGGAATTACAGCA 60.078 57.895 2.24 0.00 45.00 4.41
846 1253 1.094785 CAACCGGCCAGGAATTACAG 58.905 55.000 18.74 0.00 45.00 2.74
847 1254 0.693622 TCAACCGGCCAGGAATTACA 59.306 50.000 18.74 0.00 45.00 2.41
848 1255 1.676006 CATCAACCGGCCAGGAATTAC 59.324 52.381 18.74 0.00 45.00 1.89
851 1258 1.076777 CCATCAACCGGCCAGGAAT 60.077 57.895 18.74 7.56 45.00 3.01
852 1259 2.354729 CCATCAACCGGCCAGGAA 59.645 61.111 18.74 5.81 45.00 3.36
918 2732 7.587037 TTCACTTCAGTCTCCATTGATTTTT 57.413 32.000 0.00 0.00 0.00 1.94
919 2733 7.771927 ATTCACTTCAGTCTCCATTGATTTT 57.228 32.000 0.00 0.00 0.00 1.82
920 2734 7.771927 AATTCACTTCAGTCTCCATTGATTT 57.228 32.000 0.00 0.00 0.00 2.17
921 2735 7.771927 AAATTCACTTCAGTCTCCATTGATT 57.228 32.000 0.00 0.00 0.00 2.57
927 2741 6.179906 AGAGAAAATTCACTTCAGTCTCCA 57.820 37.500 0.00 0.00 32.27 3.86
965 2779 2.026262 ACTCGGGTATGACCTGCAAATT 60.026 45.455 0.00 0.00 44.40 1.82
1122 2936 4.036498 CAGCATATCTTCTTCTTGGGCTTG 59.964 45.833 0.00 0.00 0.00 4.01
1260 3074 5.186797 CAGGGTACAAGAGAAGAATCAGACT 59.813 44.000 0.00 0.00 0.00 3.24
1276 3090 3.685265 GCAACATCCATGATCAGGGTACA 60.685 47.826 24.83 7.52 33.26 2.90
1279 3093 1.285667 TGCAACATCCATGATCAGGGT 59.714 47.619 24.83 10.58 33.26 4.34
1320 3151 2.802787 ACAAGACAACTCCTCTGACG 57.197 50.000 0.00 0.00 0.00 4.35
1524 3383 9.958180 TTCACTGAAATTTCCATATCAAGAGTA 57.042 29.630 15.48 0.00 0.00 2.59
1525 3384 8.868522 TTCACTGAAATTTCCATATCAAGAGT 57.131 30.769 15.48 6.04 0.00 3.24
1527 3386 9.912634 GTTTTCACTGAAATTTCCATATCAAGA 57.087 29.630 15.48 0.48 31.34 3.02
1528 3387 9.918630 AGTTTTCACTGAAATTTCCATATCAAG 57.081 29.630 15.48 6.79 31.34 3.02
1545 3404 5.647658 TGATGTTGTCTTGTCAGTTTTCACT 59.352 36.000 0.00 0.00 0.00 3.41
1546 3405 5.879237 TGATGTTGTCTTGTCAGTTTTCAC 58.121 37.500 0.00 0.00 0.00 3.18
1547 3406 6.374053 TCTTGATGTTGTCTTGTCAGTTTTCA 59.626 34.615 0.00 0.00 0.00 2.69
1576 3439 6.228258 ACGAGCAAATAAACTTGGAAGTCTA 58.772 36.000 0.00 0.00 38.57 2.59
1579 3442 5.519722 CAACGAGCAAATAAACTTGGAAGT 58.480 37.500 0.00 0.00 42.04 3.01
1641 3504 5.799213 TGAGGAAAAGGATGAGAAGAGAAC 58.201 41.667 0.00 0.00 0.00 3.01
1662 3525 2.622942 GGAGTGATTGTTTTGGTGCTGA 59.377 45.455 0.00 0.00 0.00 4.26
1673 3536 4.780021 AGTTCATAGGTGAGGAGTGATTGT 59.220 41.667 0.00 0.00 35.39 2.71
1718 3585 3.947196 AGAGAGTGATGTAGAGTGCTCAG 59.053 47.826 1.82 0.00 0.00 3.35
1719 3586 3.944650 GAGAGAGTGATGTAGAGTGCTCA 59.055 47.826 1.82 0.00 0.00 4.26
1720 3587 3.315191 GGAGAGAGTGATGTAGAGTGCTC 59.685 52.174 0.00 0.00 0.00 4.26
1755 3622 4.020128 CCTAGCTAAGGGTCTGAAAACTGT 60.020 45.833 0.00 0.00 42.32 3.55
1756 3623 4.508662 CCTAGCTAAGGGTCTGAAAACTG 58.491 47.826 0.00 0.00 42.32 3.16
1757 3624 3.055021 GCCTAGCTAAGGGTCTGAAAACT 60.055 47.826 10.17 0.00 46.65 2.66
1758 3625 3.271729 GCCTAGCTAAGGGTCTGAAAAC 58.728 50.000 10.17 0.00 46.65 2.43
1759 3626 2.910319 TGCCTAGCTAAGGGTCTGAAAA 59.090 45.455 10.17 0.00 46.65 2.29
1819 4666 2.969238 GCACGCCATGATCTCCGG 60.969 66.667 0.00 0.00 0.00 5.14
1890 4737 2.816411 TGTACTACTCAGGTGGGGAAG 58.184 52.381 0.00 0.00 0.00 3.46
1902 4749 6.381133 TCTGTGGATTGTGATGATGTACTACT 59.619 38.462 0.00 0.00 0.00 2.57
1903 4750 6.573434 TCTGTGGATTGTGATGATGTACTAC 58.427 40.000 0.00 0.00 0.00 2.73
1904 4751 6.607198 TCTCTGTGGATTGTGATGATGTACTA 59.393 38.462 0.00 0.00 0.00 1.82
1905 4752 5.423290 TCTCTGTGGATTGTGATGATGTACT 59.577 40.000 0.00 0.00 0.00 2.73
1918 4765 6.998074 TGTCAACTTTTATGTCTCTGTGGATT 59.002 34.615 0.00 0.00 0.00 3.01
1922 4769 7.386025 TCTCATGTCAACTTTTATGTCTCTGTG 59.614 37.037 0.00 0.00 0.00 3.66
1926 4773 7.695618 GCATTCTCATGTCAACTTTTATGTCTC 59.304 37.037 0.00 0.00 32.28 3.36
1928 4775 6.467047 CGCATTCTCATGTCAACTTTTATGTC 59.533 38.462 0.00 0.00 32.28 3.06
1930 4777 6.545508 TCGCATTCTCATGTCAACTTTTATG 58.454 36.000 0.00 0.00 32.28 1.90
1933 4780 5.392380 GGATCGCATTCTCATGTCAACTTTT 60.392 40.000 0.00 0.00 32.28 2.27
1934 4781 4.095483 GGATCGCATTCTCATGTCAACTTT 59.905 41.667 0.00 0.00 32.28 2.66
1938 4785 2.938451 GTGGATCGCATTCTCATGTCAA 59.062 45.455 0.00 0.00 32.28 3.18
1940 4787 1.869767 GGTGGATCGCATTCTCATGTC 59.130 52.381 0.00 0.00 32.28 3.06
1941 4788 1.475751 GGGTGGATCGCATTCTCATGT 60.476 52.381 0.00 0.00 32.28 3.21
1942 4789 1.233019 GGGTGGATCGCATTCTCATG 58.767 55.000 0.00 0.00 0.00 3.07
1943 4790 0.839277 TGGGTGGATCGCATTCTCAT 59.161 50.000 0.00 0.00 34.08 2.90
1946 4793 0.107508 CAGTGGGTGGATCGCATTCT 60.108 55.000 0.00 0.00 40.92 2.40
1949 4796 2.124570 GCAGTGGGTGGATCGCAT 60.125 61.111 0.00 0.00 40.92 4.73
1950 4797 4.758251 CGCAGTGGGTGGATCGCA 62.758 66.667 0.00 0.00 36.65 5.10
1976 4823 1.266175 CCACACTCAAAAGCTCTGCTG 59.734 52.381 0.00 0.00 39.62 4.41
1980 4827 1.133976 AGCACCACACTCAAAAGCTCT 60.134 47.619 0.00 0.00 0.00 4.09
1982 4829 1.312815 GAGCACCACACTCAAAAGCT 58.687 50.000 0.00 0.00 34.18 3.74
1983 4830 1.024271 TGAGCACCACACTCAAAAGC 58.976 50.000 0.00 0.00 41.10 3.51
1984 4831 2.763249 GTGAGCACCACACTCAAAAG 57.237 50.000 4.63 0.00 45.32 2.27
2015 4866 2.292267 CGAATCCCTTCATCAACCTGG 58.708 52.381 0.00 0.00 0.00 4.45
2016 4867 2.292267 CCGAATCCCTTCATCAACCTG 58.708 52.381 0.00 0.00 0.00 4.00
2031 4882 4.062991 GAGTACAACAAGGTTCACCGAAT 58.937 43.478 0.00 0.00 42.08 3.34
2037 4888 2.358582 TCGTCGAGTACAACAAGGTTCA 59.641 45.455 0.00 0.00 0.00 3.18
2066 4918 1.839747 ACTACGTGCCCCAGTTGGA 60.840 57.895 0.00 0.00 37.39 3.53
2104 4957 4.520492 ACCTGGCAAGTAACTTTCATTCAG 59.480 41.667 0.00 0.00 0.00 3.02
2108 4961 3.821033 GTCACCTGGCAAGTAACTTTCAT 59.179 43.478 0.00 0.00 0.00 2.57
2109 4962 3.211045 GTCACCTGGCAAGTAACTTTCA 58.789 45.455 0.00 0.00 0.00 2.69
2110 4963 3.003378 GTGTCACCTGGCAAGTAACTTTC 59.997 47.826 0.00 0.00 0.00 2.62
2111 4964 2.949644 GTGTCACCTGGCAAGTAACTTT 59.050 45.455 0.00 0.00 0.00 2.66
2112 4965 2.172717 AGTGTCACCTGGCAAGTAACTT 59.827 45.455 0.00 0.00 0.00 2.66
2113 4966 1.768870 AGTGTCACCTGGCAAGTAACT 59.231 47.619 0.00 0.00 0.00 2.24
2114 4967 1.873591 CAGTGTCACCTGGCAAGTAAC 59.126 52.381 0.00 0.00 0.00 2.50
2115 4968 1.202758 CCAGTGTCACCTGGCAAGTAA 60.203 52.381 0.00 0.00 45.19 2.24
2116 4969 0.396435 CCAGTGTCACCTGGCAAGTA 59.604 55.000 0.00 0.00 45.19 2.24
2117 4970 1.149174 CCAGTGTCACCTGGCAAGT 59.851 57.895 0.00 0.00 45.19 3.16
2118 4971 4.069869 CCAGTGTCACCTGGCAAG 57.930 61.111 0.00 0.00 45.19 4.01
2123 4976 4.223032 AGGAAGTATTACCAGTGTCACCTG 59.777 45.833 0.00 0.00 0.00 4.00
2124 4977 4.223032 CAGGAAGTATTACCAGTGTCACCT 59.777 45.833 0.00 0.00 0.00 4.00
2125 4978 4.020485 ACAGGAAGTATTACCAGTGTCACC 60.020 45.833 0.00 0.00 0.00 4.02
2126 4979 5.148651 ACAGGAAGTATTACCAGTGTCAC 57.851 43.478 0.00 0.00 0.00 3.67
2127 4980 4.836175 TGACAGGAAGTATTACCAGTGTCA 59.164 41.667 11.77 11.77 38.28 3.58
2128 4981 5.401531 TGACAGGAAGTATTACCAGTGTC 57.598 43.478 0.00 0.00 34.28 3.67
2129 4982 6.173339 CAATGACAGGAAGTATTACCAGTGT 58.827 40.000 0.00 0.00 0.00 3.55
2130 4983 6.092670 CACAATGACAGGAAGTATTACCAGTG 59.907 42.308 0.00 0.00 0.00 3.66
2131 4984 6.173339 CACAATGACAGGAAGTATTACCAGT 58.827 40.000 0.00 0.00 0.00 4.00
2132 4985 5.065218 GCACAATGACAGGAAGTATTACCAG 59.935 44.000 0.00 0.00 0.00 4.00
2133 4986 4.941263 GCACAATGACAGGAAGTATTACCA 59.059 41.667 0.00 0.00 0.00 3.25
2134 4987 5.186198 AGCACAATGACAGGAAGTATTACC 58.814 41.667 0.00 0.00 0.00 2.85
2135 4988 7.010552 CAGTAGCACAATGACAGGAAGTATTAC 59.989 40.741 0.00 0.00 0.00 1.89
2136 4989 7.041721 CAGTAGCACAATGACAGGAAGTATTA 58.958 38.462 0.00 0.00 0.00 0.98
2137 4990 5.877012 CAGTAGCACAATGACAGGAAGTATT 59.123 40.000 0.00 0.00 0.00 1.89
2138 4991 5.046304 ACAGTAGCACAATGACAGGAAGTAT 60.046 40.000 0.00 0.00 0.00 2.12
2139 4992 4.283467 ACAGTAGCACAATGACAGGAAGTA 59.717 41.667 0.00 0.00 0.00 2.24
2140 4993 3.071602 ACAGTAGCACAATGACAGGAAGT 59.928 43.478 0.00 0.00 0.00 3.01
2141 4994 3.434641 CACAGTAGCACAATGACAGGAAG 59.565 47.826 0.00 0.00 0.00 3.46
2142 4995 3.070878 TCACAGTAGCACAATGACAGGAA 59.929 43.478 0.00 0.00 0.00 3.36
2143 4996 2.632512 TCACAGTAGCACAATGACAGGA 59.367 45.455 0.00 0.00 0.00 3.86
2144 4997 2.738846 GTCACAGTAGCACAATGACAGG 59.261 50.000 13.19 0.00 36.12 4.00
2145 4998 2.409715 CGTCACAGTAGCACAATGACAG 59.590 50.000 15.92 9.49 35.95 3.51
2146 4999 2.403259 CGTCACAGTAGCACAATGACA 58.597 47.619 15.92 0.00 35.95 3.58
2147 5000 1.726791 CCGTCACAGTAGCACAATGAC 59.273 52.381 0.00 10.29 34.10 3.06
2148 5001 1.343142 ACCGTCACAGTAGCACAATGA 59.657 47.619 0.00 0.00 0.00 2.57
2149 5002 1.795768 ACCGTCACAGTAGCACAATG 58.204 50.000 0.00 0.00 0.00 2.82
2150 5003 3.671008 TTACCGTCACAGTAGCACAAT 57.329 42.857 0.00 0.00 0.00 2.71
2151 5004 3.006003 TGATTACCGTCACAGTAGCACAA 59.994 43.478 0.00 0.00 0.00 3.33
2152 5005 2.559231 TGATTACCGTCACAGTAGCACA 59.441 45.455 0.00 0.00 0.00 4.57
2153 5006 3.226346 TGATTACCGTCACAGTAGCAC 57.774 47.619 0.00 0.00 0.00 4.40
2154 5007 4.885325 TCTATGATTACCGTCACAGTAGCA 59.115 41.667 0.00 0.00 0.00 3.49
2155 5008 5.434352 TCTATGATTACCGTCACAGTAGC 57.566 43.478 0.00 0.00 0.00 3.58
2156 5009 8.873215 AAAATCTATGATTACCGTCACAGTAG 57.127 34.615 0.00 0.00 0.00 2.57
2157 5010 8.692710 AGAAAATCTATGATTACCGTCACAGTA 58.307 33.333 0.00 0.00 0.00 2.74
2158 5011 7.556844 AGAAAATCTATGATTACCGTCACAGT 58.443 34.615 0.00 0.00 0.00 3.55
2159 5012 8.425577 AAGAAAATCTATGATTACCGTCACAG 57.574 34.615 0.00 0.00 0.00 3.66
2160 5013 8.258007 AGAAGAAAATCTATGATTACCGTCACA 58.742 33.333 0.00 0.00 0.00 3.58
2161 5014 8.649973 AGAAGAAAATCTATGATTACCGTCAC 57.350 34.615 0.00 0.00 0.00 3.67
2162 5015 9.314321 GAAGAAGAAAATCTATGATTACCGTCA 57.686 33.333 0.00 0.00 0.00 4.35
2163 5016 9.535878 AGAAGAAGAAAATCTATGATTACCGTC 57.464 33.333 0.00 0.00 0.00 4.79
2164 5017 9.319143 CAGAAGAAGAAAATCTATGATTACCGT 57.681 33.333 0.00 0.00 0.00 4.83
2165 5018 8.768955 CCAGAAGAAGAAAATCTATGATTACCG 58.231 37.037 0.00 0.00 0.00 4.02
2166 5019 8.563732 GCCAGAAGAAGAAAATCTATGATTACC 58.436 37.037 0.00 0.00 0.00 2.85
2167 5020 8.279103 CGCCAGAAGAAGAAAATCTATGATTAC 58.721 37.037 0.00 0.00 0.00 1.89
2168 5021 7.041780 GCGCCAGAAGAAGAAAATCTATGATTA 60.042 37.037 0.00 0.00 0.00 1.75
2169 5022 6.238593 GCGCCAGAAGAAGAAAATCTATGATT 60.239 38.462 0.00 0.00 0.00 2.57
2170 5023 5.238214 GCGCCAGAAGAAGAAAATCTATGAT 59.762 40.000 0.00 0.00 0.00 2.45
2171 5024 4.572389 GCGCCAGAAGAAGAAAATCTATGA 59.428 41.667 0.00 0.00 0.00 2.15
2172 5025 4.574013 AGCGCCAGAAGAAGAAAATCTATG 59.426 41.667 2.29 0.00 0.00 2.23
2173 5026 4.775236 AGCGCCAGAAGAAGAAAATCTAT 58.225 39.130 2.29 0.00 0.00 1.98
2174 5027 4.081420 AGAGCGCCAGAAGAAGAAAATCTA 60.081 41.667 2.29 0.00 0.00 1.98
2175 5028 3.006247 GAGCGCCAGAAGAAGAAAATCT 58.994 45.455 2.29 0.00 0.00 2.40
2176 5029 3.006247 AGAGCGCCAGAAGAAGAAAATC 58.994 45.455 2.29 0.00 0.00 2.17
2177 5030 2.746362 CAGAGCGCCAGAAGAAGAAAAT 59.254 45.455 2.29 0.00 0.00 1.82
2178 5031 2.146342 CAGAGCGCCAGAAGAAGAAAA 58.854 47.619 2.29 0.00 0.00 2.29
2179 5032 1.800805 CAGAGCGCCAGAAGAAGAAA 58.199 50.000 2.29 0.00 0.00 2.52
2180 5033 0.671781 GCAGAGCGCCAGAAGAAGAA 60.672 55.000 2.29 0.00 32.94 2.52
2181 5034 1.079543 GCAGAGCGCCAGAAGAAGA 60.080 57.895 2.29 0.00 32.94 2.87
2182 5035 1.079266 AGCAGAGCGCCAGAAGAAG 60.079 57.895 2.29 0.00 44.04 2.85
2183 5036 1.079543 GAGCAGAGCGCCAGAAGAA 60.080 57.895 2.29 0.00 44.04 2.52
2184 5037 1.981312 AGAGCAGAGCGCCAGAAGA 60.981 57.895 2.29 0.00 44.04 2.87
2185 5038 1.810441 CAGAGCAGAGCGCCAGAAG 60.810 63.158 2.29 0.00 44.04 2.85
2186 5039 1.820010 TTCAGAGCAGAGCGCCAGAA 61.820 55.000 2.29 0.00 44.04 3.02
2187 5040 1.820010 TTTCAGAGCAGAGCGCCAGA 61.820 55.000 2.29 0.00 44.04 3.86
2188 5041 1.360194 CTTTCAGAGCAGAGCGCCAG 61.360 60.000 2.29 0.00 44.04 4.85
2189 5042 1.375140 CTTTCAGAGCAGAGCGCCA 60.375 57.895 2.29 0.00 44.04 5.69
2190 5043 3.483959 CTTTCAGAGCAGAGCGCC 58.516 61.111 2.29 0.00 44.04 6.53
2201 5054 3.057033 CCTTCCATTGTTCTGGCTTTCAG 60.057 47.826 0.00 0.00 44.68 3.02
2202 5055 2.892852 CCTTCCATTGTTCTGGCTTTCA 59.107 45.455 0.00 0.00 36.16 2.69
2203 5056 3.157087 TCCTTCCATTGTTCTGGCTTTC 58.843 45.455 0.00 0.00 36.16 2.62
2204 5057 3.243359 TCCTTCCATTGTTCTGGCTTT 57.757 42.857 0.00 0.00 36.16 3.51
2205 5058 2.978156 TCCTTCCATTGTTCTGGCTT 57.022 45.000 0.00 0.00 36.16 4.35
2206 5059 2.978156 TTCCTTCCATTGTTCTGGCT 57.022 45.000 0.00 0.00 36.16 4.75
2207 5060 2.353109 GCTTTCCTTCCATTGTTCTGGC 60.353 50.000 0.00 0.00 36.16 4.85
2208 5061 3.160269 AGCTTTCCTTCCATTGTTCTGG 58.840 45.455 0.00 0.00 37.66 3.86
2209 5062 4.156739 GGTAGCTTTCCTTCCATTGTTCTG 59.843 45.833 0.00 0.00 31.70 3.02
2210 5063 4.202567 TGGTAGCTTTCCTTCCATTGTTCT 60.203 41.667 0.00 0.00 36.23 3.01
2211 5064 4.079253 TGGTAGCTTTCCTTCCATTGTTC 58.921 43.478 0.00 0.00 36.23 3.18
2212 5065 4.112634 TGGTAGCTTTCCTTCCATTGTT 57.887 40.909 0.00 0.00 36.23 2.83
2213 5066 3.806949 TGGTAGCTTTCCTTCCATTGT 57.193 42.857 0.00 0.00 36.23 2.71
2214 5067 5.297776 CAGTATGGTAGCTTTCCTTCCATTG 59.702 44.000 6.76 0.00 46.12 2.82
2215 5068 5.440610 CAGTATGGTAGCTTTCCTTCCATT 58.559 41.667 6.76 0.00 46.12 3.16
2217 5070 4.487714 CAGTATGGTAGCTTTCCTTCCA 57.512 45.455 0.00 0.00 43.98 3.53
2240 5093 2.484264 GAGTGTGTGTAGCATTGGGAAC 59.516 50.000 0.00 0.00 0.00 3.62
2241 5094 2.105649 TGAGTGTGTGTAGCATTGGGAA 59.894 45.455 0.00 0.00 0.00 3.97
2242 5095 1.696884 TGAGTGTGTGTAGCATTGGGA 59.303 47.619 0.00 0.00 0.00 4.37
2243 5096 1.806542 GTGAGTGTGTGTAGCATTGGG 59.193 52.381 0.00 0.00 0.00 4.12
2244 5097 1.806542 GGTGAGTGTGTGTAGCATTGG 59.193 52.381 0.00 0.00 0.00 3.16
2245 5098 1.460743 CGGTGAGTGTGTGTAGCATTG 59.539 52.381 0.00 0.00 0.00 2.82
2246 5099 1.608025 CCGGTGAGTGTGTGTAGCATT 60.608 52.381 0.00 0.00 0.00 3.56
2247 5100 0.037326 CCGGTGAGTGTGTGTAGCAT 60.037 55.000 0.00 0.00 0.00 3.79
2248 5101 1.365999 CCGGTGAGTGTGTGTAGCA 59.634 57.895 0.00 0.00 0.00 3.49
2249 5102 4.261888 CCGGTGAGTGTGTGTAGC 57.738 61.111 0.00 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.