Multiple sequence alignment - TraesCS6A01G355600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G355600 chr6A 100.000 8158 0 0 1 8158 586840401 586832244 0.000000e+00 15066.0
1 TraesCS6A01G355600 chr6A 91.722 906 49 19 5064 5959 14357411 14356522 0.000000e+00 1234.0
2 TraesCS6A01G355600 chr6A 88.916 415 31 8 4653 5064 14358043 14357641 1.580000e-136 497.0
3 TraesCS6A01G355600 chr6A 86.580 231 27 3 1827 2056 578553799 578553572 1.360000e-62 252.0
4 TraesCS6A01G355600 chr6A 81.070 243 46 0 87 329 586852317 586852075 2.320000e-45 195.0
5 TraesCS6A01G355600 chr6A 84.211 133 12 3 5792 5916 14357235 14357366 4.000000e-23 121.0
6 TraesCS6A01G355600 chr6A 79.381 97 10 5 1539 1635 466628187 466628273 8.840000e-05 60.2
7 TraesCS6A01G355600 chr6B 94.859 2023 76 11 1893 3903 663710741 663708735 0.000000e+00 3134.0
8 TraesCS6A01G355600 chr6B 93.797 1209 63 9 6955 8158 51760753 51761954 0.000000e+00 1807.0
9 TraesCS6A01G355600 chr6B 93.913 1035 53 9 7128 8158 30010381 30009353 0.000000e+00 1554.0
10 TraesCS6A01G355600 chr6B 92.321 586 40 4 6375 6957 663697902 663697319 0.000000e+00 828.0
11 TraesCS6A01G355600 chr6B 85.535 719 54 16 445 1125 663723273 663722567 0.000000e+00 706.0
12 TraesCS6A01G355600 chr6B 95.738 305 13 0 1343 1647 663722077 663721773 7.360000e-135 492.0
13 TraesCS6A01G355600 chr6B 90.823 316 15 3 1122 1432 663722387 663722081 2.120000e-110 411.0
14 TraesCS6A01G355600 chr6B 95.050 202 10 0 3895 4096 663706435 663706234 1.320000e-82 318.0
15 TraesCS6A01G355600 chr6B 88.293 205 13 5 4446 4649 663698088 663697894 1.370000e-57 235.0
16 TraesCS6A01G355600 chr6B 84.388 237 22 9 207 438 663723585 663723359 1.380000e-52 219.0
17 TraesCS6A01G355600 chr6B 85.417 144 20 1 1912 2055 42232002 42232144 1.830000e-31 148.0
18 TraesCS6A01G355600 chr6B 96.471 85 3 0 4085 4169 663698166 663698082 3.070000e-29 141.0
19 TraesCS6A01G355600 chr6B 94.366 71 3 1 1827 1897 663721781 663721712 3.110000e-19 108.0
20 TraesCS6A01G355600 chr5A 97.367 1747 26 6 4644 6381 468571062 468572797 0.000000e+00 2953.0
21 TraesCS6A01G355600 chr5A 90.399 552 38 6 4974 5522 563438770 563439309 0.000000e+00 712.0
22 TraesCS6A01G355600 chr5A 89.827 462 34 4 5597 6045 563439310 563439771 1.530000e-161 580.0
23 TraesCS6A01G355600 chr5A 88.562 306 30 3 4649 4950 563438471 563438775 4.650000e-97 366.0
24 TraesCS6A01G355600 chr5A 74.675 616 107 20 4649 5240 468572792 468572202 2.290000e-55 228.0
25 TraesCS6A01G355600 chr5A 86.861 137 17 1 1829 1965 601304650 601304785 1.420000e-32 152.0
26 TraesCS6A01G355600 chr5A 84.946 93 7 3 1536 1626 139688448 139688535 4.060000e-13 87.9
27 TraesCS6A01G355600 chr5B 98.501 1201 16 2 6958 8158 666318512 666319710 0.000000e+00 2117.0
28 TraesCS6A01G355600 chr5B 83.527 516 63 15 5141 5647 124632196 124631694 5.770000e-126 462.0
29 TraesCS6A01G355600 chr5B 90.598 234 20 1 1827 2058 590778504 590778737 7.950000e-80 309.0
30 TraesCS6A01G355600 chr5B 93.443 183 11 1 1646 1827 566020797 566020615 3.750000e-68 270.0
31 TraesCS6A01G355600 chr5B 87.554 233 25 4 1827 2058 590666719 590666948 4.850000e-67 267.0
32 TraesCS6A01G355600 chr5B 89.815 108 9 2 5797 5903 124631705 124631599 3.970000e-28 137.0
33 TraesCS6A01G355600 chr5B 81.046 153 27 2 6223 6374 363557013 363556862 4.000000e-23 121.0
34 TraesCS6A01G355600 chr5B 82.203 118 19 2 6262 6378 274997775 274997891 5.210000e-17 100.0
35 TraesCS6A01G355600 chr5B 86.364 88 6 3 1541 1626 309388802 309388719 3.140000e-14 91.6
36 TraesCS6A01G355600 chr5B 83.750 80 9 2 1539 1618 678546723 678546648 1.140000e-08 73.1
37 TraesCS6A01G355600 chr6D 95.264 1288 45 5 2512 3794 438308946 438307670 0.000000e+00 2026.0
38 TraesCS6A01G355600 chr6D 88.962 761 40 16 1 731 438311285 438310539 0.000000e+00 900.0
39 TraesCS6A01G355600 chr6D 89.046 566 45 9 6395 6957 438304713 438304162 0.000000e+00 686.0
40 TraesCS6A01G355600 chr6D 94.688 433 17 5 4216 4647 438305145 438304718 0.000000e+00 667.0
41 TraesCS6A01G355600 chr6D 90.177 509 32 8 867 1364 438310406 438309905 0.000000e+00 647.0
42 TraesCS6A01G355600 chr6D 95.262 401 17 1 3788 4186 438305544 438305144 1.160000e-177 634.0
43 TraesCS6A01G355600 chr6D 84.242 330 32 5 2135 2456 438309503 438309186 3.700000e-78 303.0
44 TraesCS6A01G355600 chr6D 80.220 273 50 4 87 357 438341650 438341380 1.390000e-47 202.0
45 TraesCS6A01G355600 chr6D 91.045 67 4 1 1581 1647 90341686 90341750 1.130000e-13 89.8
46 TraesCS6A01G355600 chr6D 95.918 49 1 1 730 778 438310508 438310461 2.440000e-10 78.7
47 TraesCS6A01G355600 chr7A 95.667 1200 33 7 6963 8158 219862220 219861036 0.000000e+00 1910.0
48 TraesCS6A01G355600 chr7A 90.399 552 37 8 4974 5521 638489211 638489750 0.000000e+00 712.0
49 TraesCS6A01G355600 chr7A 89.394 462 36 4 5597 6045 638489752 638490213 3.300000e-158 569.0
50 TraesCS6A01G355600 chr7A 88.599 307 28 4 4649 4950 638488912 638489216 4.650000e-97 366.0
51 TraesCS6A01G355600 chr3D 86.644 1752 155 38 2774 4468 313818674 313816945 0.000000e+00 1866.0
52 TraesCS6A01G355600 chr3D 81.967 427 62 7 6542 6957 313816691 313816269 1.690000e-91 348.0
53 TraesCS6A01G355600 chr3D 79.630 378 57 9 962 1331 313820439 313820074 3.780000e-63 254.0
54 TraesCS6A01G355600 chr3D 86.161 224 30 1 1829 2051 8417303 8417080 2.940000e-59 241.0
55 TraesCS6A01G355600 chr3D 82.209 163 26 2 4654 4815 40257847 40257687 3.970000e-28 137.0
56 TraesCS6A01G355600 chr3D 77.564 156 35 0 6219 6374 165428402 165428557 2.420000e-15 95.3
57 TraesCS6A01G355600 chr3D 83.505 97 10 5 1537 1630 549450949 549450856 1.460000e-12 86.1
58 TraesCS6A01G355600 chr3B 86.183 1766 170 31 2758 4468 405781741 405783487 0.000000e+00 1842.0
59 TraesCS6A01G355600 chr3B 94.035 1207 61 9 6958 8158 756256673 756257874 0.000000e+00 1820.0
60 TraesCS6A01G355600 chr3B 82.463 536 43 20 2218 2734 405781100 405781603 9.790000e-114 422.0
61 TraesCS6A01G355600 chr3B 86.207 232 24 5 1827 2056 792850157 792850382 2.270000e-60 244.0
62 TraesCS6A01G355600 chr3B 87.288 118 14 1 6258 6374 734661426 734661309 5.140000e-27 134.0
63 TraesCS6A01G355600 chr3A 97.691 996 15 4 7164 8158 7993585 7992597 0.000000e+00 1705.0
64 TraesCS6A01G355600 chr3A 91.038 848 44 7 5538 6375 503708418 503709243 0.000000e+00 1116.0
65 TraesCS6A01G355600 chr3A 92.805 681 48 1 2758 3437 416311185 416310505 0.000000e+00 985.0
66 TraesCS6A01G355600 chr3A 88.905 703 60 8 3768 4468 416307842 416307156 0.000000e+00 850.0
67 TraesCS6A01G355600 chr3A 83.865 533 48 18 2221 2734 416311836 416311323 2.660000e-129 473.0
68 TraesCS6A01G355600 chr3A 82.093 430 56 12 6542 6957 416306903 416306481 1.690000e-91 348.0
69 TraesCS6A01G355600 chr3A 79.924 264 40 6 5519 5771 725109322 725109061 1.810000e-41 182.0
70 TraesCS6A01G355600 chr4D 84.606 1637 183 32 4649 6257 351372697 351371102 0.000000e+00 1563.0
71 TraesCS6A01G355600 chr4D 84.524 252 37 2 4649 4900 351370849 351371098 1.760000e-61 248.0
72 TraesCS6A01G355600 chr4D 85.417 96 13 1 6283 6377 12094254 12094159 1.870000e-16 99.0
73 TraesCS6A01G355600 chr7D 87.836 1192 129 13 6961 8148 635707276 635708455 0.000000e+00 1384.0
74 TraesCS6A01G355600 chr7D 81.683 202 33 4 5423 5623 150500313 150500115 1.820000e-36 165.0
75 TraesCS6A01G355600 chr7D 100.000 29 0 0 1534 1562 606789186 606789158 4.000000e-03 54.7
76 TraesCS6A01G355600 chr2A 86.672 1208 133 16 6954 8148 207644113 207645305 0.000000e+00 1314.0
77 TraesCS6A01G355600 chr2A 98.343 181 3 0 1646 1826 20777917 20777737 1.320000e-82 318.0
78 TraesCS6A01G355600 chr2A 97.238 181 5 0 1646 1826 20199130 20198950 2.860000e-79 307.0
79 TraesCS6A01G355600 chr2A 92.432 185 12 2 1643 1826 3923153 3922970 6.280000e-66 263.0
80 TraesCS6A01G355600 chr2A 82.203 118 21 0 6256 6373 138103360 138103243 1.450000e-17 102.0
81 TraesCS6A01G355600 chr2A 89.362 47 5 0 5858 5904 2663748 2663794 8.840000e-05 60.2
82 TraesCS6A01G355600 chr2B 84.253 1232 150 34 6958 8158 8178274 8179492 0.000000e+00 1160.0
83 TraesCS6A01G355600 chr2B 81.143 175 29 4 6207 6378 770660599 770660772 3.970000e-28 137.0
84 TraesCS6A01G355600 chr4B 83.672 1231 157 36 6958 8158 613082937 613084153 0.000000e+00 1120.0
85 TraesCS6A01G355600 chr4B 84.524 168 25 1 4649 4815 564204853 564204686 1.820000e-36 165.0
86 TraesCS6A01G355600 chr4A 83.373 830 92 25 4649 5458 113962351 113963154 0.000000e+00 726.0
87 TraesCS6A01G355600 chr4A 86.364 594 55 17 5505 6085 113963552 113964132 6.950000e-175 625.0
88 TraesCS6A01G355600 chr4A 91.416 233 19 1 1827 2058 118636750 118636518 1.320000e-82 318.0
89 TraesCS6A01G355600 chr4A 93.478 184 10 2 1645 1827 17723221 17723403 1.040000e-68 272.0
90 TraesCS6A01G355600 chr4A 86.726 113 11 2 1536 1647 111053527 111053418 1.110000e-23 122.0
91 TraesCS6A01G355600 chrUn 97.790 181 4 0 1646 1826 342614178 342614358 6.150000e-81 313.0
92 TraesCS6A01G355600 chr1A 94.536 183 8 2 1646 1827 548550934 548551115 1.730000e-71 281.0
93 TraesCS6A01G355600 chr1A 92.973 185 11 2 1644 1827 580587653 580587836 1.350000e-67 268.0
94 TraesCS6A01G355600 chr1A 100.000 29 0 0 6377 6405 58289689 58289661 4.000000e-03 54.7
95 TraesCS6A01G355600 chr5D 93.889 180 8 2 1646 1822 246284845 246284666 1.350000e-67 268.0
96 TraesCS6A01G355600 chr2D 82.390 318 44 7 5459 5771 221037698 221037388 4.850000e-67 267.0
97 TraesCS6A01G355600 chr2D 88.462 104 9 1 1541 1644 87999658 87999758 1.110000e-23 122.0
98 TraesCS6A01G355600 chr7B 85.897 234 28 3 1824 2056 579443219 579442990 2.270000e-60 244.0
99 TraesCS6A01G355600 chr1D 93.617 94 5 1 4374 4466 484391671 484391578 1.100000e-28 139.0
100 TraesCS6A01G355600 chr1D 100.000 29 0 0 6377 6405 59879191 59879163 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G355600 chr6A 586832244 586840401 8157 True 15066.000000 15066 100.000000 1 8158 1 chr6A.!!$R2 8157
1 TraesCS6A01G355600 chr6A 14356522 14358043 1521 True 865.500000 1234 90.319000 4653 5959 2 chr6A.!!$R4 1306
2 TraesCS6A01G355600 chr6B 51760753 51761954 1201 False 1807.000000 1807 93.797000 6955 8158 1 chr6B.!!$F2 1203
3 TraesCS6A01G355600 chr6B 663706234 663710741 4507 True 1726.000000 3134 94.954500 1893 4096 2 chr6B.!!$R3 2203
4 TraesCS6A01G355600 chr6B 30009353 30010381 1028 True 1554.000000 1554 93.913000 7128 8158 1 chr6B.!!$R1 1030
5 TraesCS6A01G355600 chr6B 663697319 663698166 847 True 401.333333 828 92.361667 4085 6957 3 chr6B.!!$R2 2872
6 TraesCS6A01G355600 chr6B 663721712 663723585 1873 True 387.200000 706 90.170000 207 1897 5 chr6B.!!$R4 1690
7 TraesCS6A01G355600 chr5A 468571062 468572797 1735 False 2953.000000 2953 97.367000 4644 6381 1 chr5A.!!$F2 1737
8 TraesCS6A01G355600 chr5A 563438471 563439771 1300 False 552.666667 712 89.596000 4649 6045 3 chr5A.!!$F4 1396
9 TraesCS6A01G355600 chr5A 468572202 468572792 590 True 228.000000 228 74.675000 4649 5240 1 chr5A.!!$R1 591
10 TraesCS6A01G355600 chr5B 666318512 666319710 1198 False 2117.000000 2117 98.501000 6958 8158 1 chr5B.!!$F4 1200
11 TraesCS6A01G355600 chr5B 124631599 124632196 597 True 299.500000 462 86.671000 5141 5903 2 chr5B.!!$R5 762
12 TraesCS6A01G355600 chr6D 438304162 438311285 7123 True 742.712500 2026 91.694875 1 6957 8 chr6D.!!$R2 6956
13 TraesCS6A01G355600 chr7A 219861036 219862220 1184 True 1910.000000 1910 95.667000 6963 8158 1 chr7A.!!$R1 1195
14 TraesCS6A01G355600 chr7A 638488912 638490213 1301 False 549.000000 712 89.464000 4649 6045 3 chr7A.!!$F1 1396
15 TraesCS6A01G355600 chr3D 313816269 313820439 4170 True 822.666667 1866 82.747000 962 6957 3 chr3D.!!$R4 5995
16 TraesCS6A01G355600 chr3B 756256673 756257874 1201 False 1820.000000 1820 94.035000 6958 8158 1 chr3B.!!$F1 1200
17 TraesCS6A01G355600 chr3B 405781100 405783487 2387 False 1132.000000 1842 84.323000 2218 4468 2 chr3B.!!$F3 2250
18 TraesCS6A01G355600 chr3A 7992597 7993585 988 True 1705.000000 1705 97.691000 7164 8158 1 chr3A.!!$R1 994
19 TraesCS6A01G355600 chr3A 503708418 503709243 825 False 1116.000000 1116 91.038000 5538 6375 1 chr3A.!!$F1 837
20 TraesCS6A01G355600 chr3A 416306481 416311836 5355 True 664.000000 985 86.917000 2221 6957 4 chr3A.!!$R3 4736
21 TraesCS6A01G355600 chr4D 351371102 351372697 1595 True 1563.000000 1563 84.606000 4649 6257 1 chr4D.!!$R2 1608
22 TraesCS6A01G355600 chr7D 635707276 635708455 1179 False 1384.000000 1384 87.836000 6961 8148 1 chr7D.!!$F1 1187
23 TraesCS6A01G355600 chr2A 207644113 207645305 1192 False 1314.000000 1314 86.672000 6954 8148 1 chr2A.!!$F2 1194
24 TraesCS6A01G355600 chr2B 8178274 8179492 1218 False 1160.000000 1160 84.253000 6958 8158 1 chr2B.!!$F1 1200
25 TraesCS6A01G355600 chr4B 613082937 613084153 1216 False 1120.000000 1120 83.672000 6958 8158 1 chr4B.!!$F1 1200
26 TraesCS6A01G355600 chr4A 113962351 113964132 1781 False 675.500000 726 84.868500 4649 6085 2 chr4A.!!$F2 1436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 957 0.035458 AACAAGGAGCCAAGGACTCG 59.965 55.000 0.00 0.0 34.87 4.18 F
1607 2114 0.455972 TTTTGCAGCGCCGAAATAGC 60.456 50.000 2.29 0.0 0.00 2.97 F
1694 2201 0.036732 AGCAGCGGACCTCAAAATCA 59.963 50.000 0.00 0.0 0.00 2.57 F
2037 2548 0.250597 GCGTGAGGTAGTTTTGGGGT 60.251 55.000 0.00 0.0 0.00 4.95 F
2832 4211 0.807496 GTTGCAGTGAGGATGGAAGC 59.193 55.000 0.00 0.0 0.00 3.86 F
3622 5346 3.056821 TCTGTCAAATGGAGTACTGGACG 60.057 47.826 0.00 0.0 0.00 4.79 F
4210 12398 1.798223 TGGAGATCGTTTGTTGAAGCG 59.202 47.619 0.00 0.0 37.15 4.68 F
5007 13376 0.109781 CAATCAACAAACGAGCCCCG 60.110 55.000 0.00 0.0 45.44 5.73 F
5011 13380 1.375523 AACAAACGAGCCCCGCTAG 60.376 57.895 0.00 0.0 39.88 3.42 F
5012 13381 2.511600 CAAACGAGCCCCGCTAGG 60.512 66.667 0.00 0.0 39.88 3.02 F
6285 15284 3.495377 CCGTATCTGAACGTTTGGTCAAA 59.505 43.478 0.46 0.0 41.27 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 2182 0.036732 TGATTTTGAGGTCCGCTGCT 59.963 50.000 0.00 0.00 0.00 4.24 R
3332 4715 3.319689 TCGATATTACAGCCCGTGAATCA 59.680 43.478 0.00 0.00 0.00 2.57 R
3683 5457 7.978975 GGCATTTTCAGGTGCTGTTTTATATAA 59.021 33.333 0.00 0.00 41.04 0.98 R
3998 12186 1.218047 CTCAATCCGTTCCCGCTCA 59.782 57.895 0.00 0.00 0.00 4.26 R
4210 12398 0.746659 AGGCTCTGCAACAACAAACC 59.253 50.000 0.00 0.00 0.00 3.27 R
4961 13330 0.246635 CGGGTGTTGGAGACCTAGTG 59.753 60.000 0.00 0.00 33.58 2.74 R
5014 13383 0.523546 CTCGTGTAGTGGCTGTAGCG 60.524 60.000 0.00 0.00 43.26 4.26 R
6634 15636 0.733729 TTGGTTTGCGTAACTGCGTT 59.266 45.000 2.12 0.02 36.93 4.84 R
6810 15826 1.139163 GAGCACAAATTTGGCAACCG 58.861 50.000 24.29 8.99 0.00 4.44 R
6875 15891 1.612146 TTCAGGGCCCATCTCGTCA 60.612 57.895 27.56 0.00 0.00 4.35 R
8031 17095 6.495181 TGCCAGGTTTGAAGGAAAAATGTATA 59.505 34.615 0.00 0.00 0.00 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.449719 GAAAGGAAATAATAACAGAGAGGTTGA 57.550 33.333 0.00 0.00 32.29 3.18
65 66 4.789807 AGCCTGTGCAATAATCAAGATCT 58.210 39.130 0.00 0.00 41.13 2.75
118 120 5.869753 ATGCTTACATCTTGTGTGAGTTC 57.130 39.130 2.62 0.00 44.09 3.01
236 238 3.236604 GCCACCGGCTACTTTTACA 57.763 52.632 0.00 0.00 46.69 2.41
370 376 2.816087 AGTGAAGCGCATGTCAGAAAAT 59.184 40.909 11.47 0.00 0.00 1.82
374 380 5.284660 GTGAAGCGCATGTCAGAAAATAAAG 59.715 40.000 11.47 0.00 0.00 1.85
392 398 4.913335 AAAGATGTTCTAGCATGCATGG 57.087 40.909 27.34 11.67 0.00 3.66
398 404 4.466827 TGTTCTAGCATGCATGGATGAAT 58.533 39.130 29.10 18.55 0.00 2.57
399 405 5.623169 TGTTCTAGCATGCATGGATGAATA 58.377 37.500 29.10 18.67 0.00 1.75
400 406 5.704053 TGTTCTAGCATGCATGGATGAATAG 59.296 40.000 29.10 25.35 0.00 1.73
401 407 5.494390 TCTAGCATGCATGGATGAATAGT 57.506 39.130 29.10 10.66 0.00 2.12
402 408 5.872963 TCTAGCATGCATGGATGAATAGTT 58.127 37.500 29.10 9.87 0.00 2.24
403 409 7.008021 TCTAGCATGCATGGATGAATAGTTA 57.992 36.000 29.10 12.43 0.00 2.24
404 410 7.101700 TCTAGCATGCATGGATGAATAGTTAG 58.898 38.462 29.10 17.51 0.00 2.34
433 447 9.907576 CTAGTTAAACGAGATTGATTGATTGAC 57.092 33.333 0.00 0.00 0.00 3.18
435 449 8.660373 AGTTAAACGAGATTGATTGATTGACTC 58.340 33.333 0.00 0.00 0.00 3.36
440 454 5.501413 CGAGATTGATTGATTGACTCGTTGG 60.501 44.000 0.00 0.00 40.11 3.77
441 455 5.248640 AGATTGATTGATTGACTCGTTGGT 58.751 37.500 0.00 0.00 0.00 3.67
442 456 6.406370 AGATTGATTGATTGACTCGTTGGTA 58.594 36.000 0.00 0.00 0.00 3.25
534 628 2.309528 ATTTCTTCGCCTCATACGCA 57.690 45.000 0.00 0.00 0.00 5.24
535 629 2.087501 TTTCTTCGCCTCATACGCAA 57.912 45.000 0.00 0.00 0.00 4.85
620 714 2.048601 CTGAGCCCTCCATCTCAATCT 58.951 52.381 0.00 0.00 38.68 2.40
673 787 2.936498 CGTGTTCTGTTCAGGTTGACTT 59.064 45.455 0.00 0.00 0.00 3.01
687 801 5.820947 CAGGTTGACTTGTTTACTTGTAGGT 59.179 40.000 0.00 0.00 0.00 3.08
782 950 2.851045 GGGGGAACAAGGAGCCAA 59.149 61.111 0.00 0.00 0.00 4.52
783 951 1.304464 GGGGGAACAAGGAGCCAAG 60.304 63.158 0.00 0.00 0.00 3.61
784 952 1.304464 GGGGAACAAGGAGCCAAGG 60.304 63.158 0.00 0.00 0.00 3.61
785 953 1.767692 GGGAACAAGGAGCCAAGGA 59.232 57.895 0.00 0.00 0.00 3.36
786 954 0.609406 GGGAACAAGGAGCCAAGGAC 60.609 60.000 0.00 0.00 0.00 3.85
787 955 0.402121 GGAACAAGGAGCCAAGGACT 59.598 55.000 0.00 0.00 0.00 3.85
788 956 1.611936 GGAACAAGGAGCCAAGGACTC 60.612 57.143 0.00 0.00 0.00 3.36
789 957 0.035458 AACAAGGAGCCAAGGACTCG 59.965 55.000 0.00 0.00 34.87 4.18
790 958 0.832135 ACAAGGAGCCAAGGACTCGA 60.832 55.000 0.00 0.00 34.87 4.04
791 959 0.539051 CAAGGAGCCAAGGACTCGAT 59.461 55.000 0.00 0.00 34.87 3.59
792 960 1.065854 CAAGGAGCCAAGGACTCGATT 60.066 52.381 0.00 0.00 34.87 3.34
793 961 1.280457 AGGAGCCAAGGACTCGATTT 58.720 50.000 0.00 0.00 34.87 2.17
794 962 2.467880 AGGAGCCAAGGACTCGATTTA 58.532 47.619 0.00 0.00 34.87 1.40
795 963 3.041946 AGGAGCCAAGGACTCGATTTAT 58.958 45.455 0.00 0.00 34.87 1.40
796 964 3.456277 AGGAGCCAAGGACTCGATTTATT 59.544 43.478 0.00 0.00 34.87 1.40
797 965 3.810386 GGAGCCAAGGACTCGATTTATTC 59.190 47.826 0.00 0.00 34.87 1.75
798 966 3.809905 AGCCAAGGACTCGATTTATTCC 58.190 45.455 0.00 0.00 0.00 3.01
799 967 3.456277 AGCCAAGGACTCGATTTATTCCT 59.544 43.478 0.00 0.00 40.39 3.36
801 969 4.640647 GCCAAGGACTCGATTTATTCCTTT 59.359 41.667 8.78 0.00 44.54 3.11
802 970 5.820947 GCCAAGGACTCGATTTATTCCTTTA 59.179 40.000 8.78 0.00 44.54 1.85
803 971 6.238402 GCCAAGGACTCGATTTATTCCTTTAC 60.238 42.308 8.78 3.21 44.54 2.01
804 972 7.048512 CCAAGGACTCGATTTATTCCTTTACT 58.951 38.462 8.78 0.00 44.54 2.24
805 973 8.202137 CCAAGGACTCGATTTATTCCTTTACTA 58.798 37.037 8.78 0.00 44.54 1.82
806 974 9.595823 CAAGGACTCGATTTATTCCTTTACTAA 57.404 33.333 8.78 0.00 44.54 2.24
847 1015 4.267341 TCCCAAAACCCCTACAAAAAGA 57.733 40.909 0.00 0.00 0.00 2.52
875 1056 3.303938 TCCAAAAAGCCAGGAAATCACA 58.696 40.909 0.00 0.00 0.00 3.58
914 1095 1.803334 TTTCCATCGGTTCAACTCGG 58.197 50.000 0.00 0.00 0.00 4.63
1051 1232 4.200283 CCTCCACCTCGAGCTCGC 62.200 72.222 30.97 0.00 39.60 5.03
1079 1260 2.661866 GGCTGCCGCGATAACGAT 60.662 61.111 8.23 0.00 42.66 3.73
1120 1301 3.619038 GCCAGTGAGGTTTAAGAAGATCG 59.381 47.826 0.00 0.00 40.61 3.69
1124 1305 3.619038 GTGAGGTTTAAGAAGATCGCCAG 59.381 47.826 0.00 0.00 0.00 4.85
1145 1509 2.345991 GCACCCGCTGAAGTACCA 59.654 61.111 0.00 0.00 34.30 3.25
1198 1562 2.184322 ACGCATCATCGTCCGCTT 59.816 55.556 0.00 0.00 38.44 4.68
1335 1719 2.156098 CTCTCGGATGACCCTAGCTAC 58.844 57.143 0.00 0.00 0.00 3.58
1364 1749 5.605534 TCTAGGTCTTTGCATGCTAGAATC 58.394 41.667 20.33 15.25 0.00 2.52
1411 1912 2.282701 CAATGGCATTGTTTCCCTCG 57.717 50.000 27.93 3.26 35.57 4.63
1513 2020 2.243810 GTCACTCCTCAGTCCTCACTT 58.756 52.381 0.00 0.00 0.00 3.16
1524 2031 1.040646 TCCTCACTTGTTGTCGCTCT 58.959 50.000 0.00 0.00 0.00 4.09
1567 2074 2.430244 CAACAGACGCGCGGTAGT 60.430 61.111 35.22 24.51 0.00 2.73
1600 2107 2.296658 AAAAAGTTTTGCAGCGCCG 58.703 47.368 2.29 0.00 0.00 6.46
1607 2114 0.455972 TTTTGCAGCGCCGAAATAGC 60.456 50.000 2.29 0.00 0.00 2.97
1641 2148 1.305201 GAGGTTTTCCAGACGCACAA 58.695 50.000 0.00 0.00 43.73 3.33
1642 2149 1.673920 GAGGTTTTCCAGACGCACAAA 59.326 47.619 0.00 0.00 43.73 2.83
1643 2150 2.096248 AGGTTTTCCAGACGCACAAAA 58.904 42.857 0.00 0.00 43.73 2.44
1644 2151 2.099098 AGGTTTTCCAGACGCACAAAAG 59.901 45.455 0.00 0.00 43.73 2.27
1645 2152 1.852280 GTTTTCCAGACGCACAAAAGC 59.148 47.619 0.00 0.00 0.00 3.51
1646 2153 1.098869 TTTCCAGACGCACAAAAGCA 58.901 45.000 0.00 0.00 0.00 3.91
1647 2154 1.098869 TTCCAGACGCACAAAAGCAA 58.901 45.000 0.00 0.00 0.00 3.91
1648 2155 1.317613 TCCAGACGCACAAAAGCAAT 58.682 45.000 0.00 0.00 0.00 3.56
1649 2156 1.001487 TCCAGACGCACAAAAGCAATG 60.001 47.619 0.00 0.00 0.00 2.82
1650 2157 1.269206 CCAGACGCACAAAAGCAATGT 60.269 47.619 0.00 0.00 0.00 2.71
1651 2158 2.462889 CAGACGCACAAAAGCAATGTT 58.537 42.857 0.00 0.00 0.00 2.71
1652 2159 2.859538 CAGACGCACAAAAGCAATGTTT 59.140 40.909 0.00 0.00 0.00 2.83
1653 2160 3.306703 CAGACGCACAAAAGCAATGTTTT 59.693 39.130 0.00 0.00 0.00 2.43
1654 2161 4.502282 CAGACGCACAAAAGCAATGTTTTA 59.498 37.500 0.00 0.00 0.00 1.52
1655 2162 5.005203 CAGACGCACAAAAGCAATGTTTTAA 59.995 36.000 0.00 0.00 0.00 1.52
1656 2163 5.578727 AGACGCACAAAAGCAATGTTTTAAA 59.421 32.000 0.00 0.00 0.00 1.52
1657 2164 6.257630 AGACGCACAAAAGCAATGTTTTAAAT 59.742 30.769 0.00 0.00 0.00 1.40
1658 2165 7.436673 AGACGCACAAAAGCAATGTTTTAAATA 59.563 29.630 0.00 0.00 0.00 1.40
1659 2166 7.563270 ACGCACAAAAGCAATGTTTTAAATAG 58.437 30.769 0.00 0.00 0.00 1.73
1660 2167 6.516017 CGCACAAAAGCAATGTTTTAAATAGC 59.484 34.615 0.00 0.00 0.00 2.97
1661 2168 6.516017 GCACAAAAGCAATGTTTTAAATAGCG 59.484 34.615 0.00 0.00 0.00 4.26
1662 2169 7.008859 CACAAAAGCAATGTTTTAAATAGCGG 58.991 34.615 0.00 0.00 0.00 5.52
1663 2170 6.147000 ACAAAAGCAATGTTTTAAATAGCGGG 59.853 34.615 0.00 0.00 0.00 6.13
1664 2171 3.780902 AGCAATGTTTTAAATAGCGGGC 58.219 40.909 0.00 0.00 0.00 6.13
1665 2172 3.447229 AGCAATGTTTTAAATAGCGGGCT 59.553 39.130 0.00 0.00 0.00 5.19
1666 2173 4.642885 AGCAATGTTTTAAATAGCGGGCTA 59.357 37.500 2.42 2.42 0.00 3.93
1667 2174 5.301805 AGCAATGTTTTAAATAGCGGGCTAT 59.698 36.000 7.36 7.36 40.63 2.97
1668 2175 5.402270 GCAATGTTTTAAATAGCGGGCTATG 59.598 40.000 13.53 0.89 39.03 2.23
1669 2176 4.561735 TGTTTTAAATAGCGGGCTATGC 57.438 40.909 13.53 2.55 39.03 3.14
1684 2191 3.903783 TGCCAAATAGCAGCGGAC 58.096 55.556 0.00 0.00 38.00 4.79
1685 2192 1.748879 TGCCAAATAGCAGCGGACC 60.749 57.895 0.00 0.00 38.00 4.46
1686 2193 1.452108 GCCAAATAGCAGCGGACCT 60.452 57.895 0.00 0.00 0.00 3.85
1687 2194 1.440145 GCCAAATAGCAGCGGACCTC 61.440 60.000 0.00 0.00 0.00 3.85
1688 2195 0.107703 CCAAATAGCAGCGGACCTCA 60.108 55.000 0.00 0.00 0.00 3.86
1689 2196 1.678728 CCAAATAGCAGCGGACCTCAA 60.679 52.381 0.00 0.00 0.00 3.02
1690 2197 2.083774 CAAATAGCAGCGGACCTCAAA 58.916 47.619 0.00 0.00 0.00 2.69
1691 2198 2.487762 CAAATAGCAGCGGACCTCAAAA 59.512 45.455 0.00 0.00 0.00 2.44
1692 2199 2.717639 ATAGCAGCGGACCTCAAAAT 57.282 45.000 0.00 0.00 0.00 1.82
1693 2200 2.024176 TAGCAGCGGACCTCAAAATC 57.976 50.000 0.00 0.00 0.00 2.17
1694 2201 0.036732 AGCAGCGGACCTCAAAATCA 59.963 50.000 0.00 0.00 0.00 2.57
1695 2202 0.449388 GCAGCGGACCTCAAAATCAG 59.551 55.000 0.00 0.00 0.00 2.90
1696 2203 0.449388 CAGCGGACCTCAAAATCAGC 59.551 55.000 0.00 0.00 36.43 4.26
1697 2204 0.326264 AGCGGACCTCAAAATCAGCT 59.674 50.000 0.00 0.00 40.86 4.24
1698 2205 1.555075 AGCGGACCTCAAAATCAGCTA 59.445 47.619 0.00 0.00 43.32 3.32
1699 2206 2.171448 AGCGGACCTCAAAATCAGCTAT 59.829 45.455 0.00 0.00 43.32 2.97
1700 2207 3.388024 AGCGGACCTCAAAATCAGCTATA 59.612 43.478 0.00 0.00 43.32 1.31
1701 2208 3.743396 GCGGACCTCAAAATCAGCTATAG 59.257 47.826 0.00 0.00 33.80 1.31
1702 2209 3.743396 CGGACCTCAAAATCAGCTATAGC 59.257 47.826 17.33 17.33 42.49 2.97
1727 2234 1.067821 CTATAGCGGGCTATAGCAGGC 59.932 57.143 26.16 24.65 46.26 4.85
1728 2235 3.274250 CTATAGCGGGCTATAGCAGGCT 61.274 54.545 31.51 31.51 46.26 4.58
1729 2236 3.999066 CTATAGCGGGCTATAGCAGGCTA 60.999 52.174 32.94 32.94 46.26 3.93
1737 2244 2.656002 CTATAGCAGGCTATAGCGGGA 58.344 52.381 26.57 7.07 46.26 5.14
1738 2245 1.938585 ATAGCAGGCTATAGCGGGAA 58.061 50.000 18.30 3.51 43.26 3.97
1739 2246 1.712056 TAGCAGGCTATAGCGGGAAA 58.288 50.000 18.30 1.37 43.26 3.13
1740 2247 1.059913 AGCAGGCTATAGCGGGAAAT 58.940 50.000 18.30 0.00 43.26 2.17
1741 2248 1.421646 AGCAGGCTATAGCGGGAAATT 59.578 47.619 18.30 0.00 43.26 1.82
1742 2249 2.158608 AGCAGGCTATAGCGGGAAATTT 60.159 45.455 18.30 0.00 43.26 1.82
1743 2250 3.072476 AGCAGGCTATAGCGGGAAATTTA 59.928 43.478 18.30 0.00 43.26 1.40
1744 2251 4.010349 GCAGGCTATAGCGGGAAATTTAT 58.990 43.478 18.30 0.00 43.26 1.40
1745 2252 5.045869 AGCAGGCTATAGCGGGAAATTTATA 60.046 40.000 18.30 0.00 43.26 0.98
1746 2253 5.064834 GCAGGCTATAGCGGGAAATTTATAC 59.935 44.000 18.30 0.00 43.26 1.47
1747 2254 6.170506 CAGGCTATAGCGGGAAATTTATACA 58.829 40.000 18.30 0.00 43.26 2.29
1748 2255 6.823689 CAGGCTATAGCGGGAAATTTATACAT 59.176 38.462 18.30 0.00 43.26 2.29
1749 2256 6.823689 AGGCTATAGCGGGAAATTTATACATG 59.176 38.462 18.30 0.00 43.26 3.21
1750 2257 6.821665 GGCTATAGCGGGAAATTTATACATGA 59.178 38.462 18.30 0.00 43.26 3.07
1751 2258 7.011482 GGCTATAGCGGGAAATTTATACATGAG 59.989 40.741 18.30 0.00 43.26 2.90
1752 2259 7.549488 GCTATAGCGGGAAATTTATACATGAGT 59.451 37.037 9.40 0.00 0.00 3.41
1753 2260 7.907214 ATAGCGGGAAATTTATACATGAGTC 57.093 36.000 0.00 0.00 0.00 3.36
1754 2261 5.063880 AGCGGGAAATTTATACATGAGTCC 58.936 41.667 0.00 0.00 0.00 3.85
1755 2262 4.819630 GCGGGAAATTTATACATGAGTCCA 59.180 41.667 0.00 0.00 0.00 4.02
1756 2263 5.473504 GCGGGAAATTTATACATGAGTCCAT 59.526 40.000 0.00 0.00 0.00 3.41
1757 2264 6.016276 GCGGGAAATTTATACATGAGTCCATT 60.016 38.462 0.00 0.00 0.00 3.16
1758 2265 7.470009 GCGGGAAATTTATACATGAGTCCATTT 60.470 37.037 0.00 0.00 0.00 2.32
1759 2266 9.062524 CGGGAAATTTATACATGAGTCCATTTA 57.937 33.333 0.00 0.00 0.00 1.40
1761 2268 9.899226 GGAAATTTATACATGAGTCCATTTAGC 57.101 33.333 0.00 0.00 0.00 3.09
1762 2269 9.599322 GAAATTTATACATGAGTCCATTTAGCG 57.401 33.333 0.00 0.00 0.00 4.26
1763 2270 7.672983 ATTTATACATGAGTCCATTTAGCGG 57.327 36.000 0.00 0.00 0.00 5.52
1764 2271 1.668419 ACATGAGTCCATTTAGCGGC 58.332 50.000 0.00 0.00 0.00 6.53
1765 2272 1.065491 ACATGAGTCCATTTAGCGGCA 60.065 47.619 0.00 0.00 0.00 5.69
1766 2273 1.331756 CATGAGTCCATTTAGCGGCAC 59.668 52.381 1.45 0.00 0.00 5.01
1767 2274 0.392461 TGAGTCCATTTAGCGGCACC 60.392 55.000 1.45 0.00 0.00 5.01
1768 2275 1.077716 AGTCCATTTAGCGGCACCC 60.078 57.895 1.45 0.00 0.00 4.61
1769 2276 1.077716 GTCCATTTAGCGGCACCCT 60.078 57.895 1.45 0.00 0.00 4.34
1770 2277 1.077787 TCCATTTAGCGGCACCCTG 60.078 57.895 1.45 0.00 0.00 4.45
1771 2278 2.774799 CCATTTAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
1772 2279 1.750399 CATTTAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
1779 2286 3.369921 GGCACCCTGCTGAAAAGG 58.630 61.111 0.00 0.00 44.28 3.11
1780 2287 2.653115 GCACCCTGCTGAAAAGGC 59.347 61.111 0.00 0.00 40.96 4.35
1781 2288 1.905354 GCACCCTGCTGAAAAGGCT 60.905 57.895 0.00 0.00 40.96 4.58
1782 2289 0.609131 GCACCCTGCTGAAAAGGCTA 60.609 55.000 0.00 0.00 40.96 3.93
1783 2290 1.957113 GCACCCTGCTGAAAAGGCTAT 60.957 52.381 0.00 0.00 40.96 2.97
1784 2291 2.683742 GCACCCTGCTGAAAAGGCTATA 60.684 50.000 0.00 0.00 40.96 1.31
1785 2292 3.209410 CACCCTGCTGAAAAGGCTATAG 58.791 50.000 0.00 0.00 33.07 1.31
1786 2293 2.225467 CCCTGCTGAAAAGGCTATAGC 58.775 52.381 16.78 16.78 41.14 2.97
1787 2294 1.869767 CCTGCTGAAAAGGCTATAGCG 59.130 52.381 18.30 4.04 43.26 4.26
1788 2295 1.869767 CTGCTGAAAAGGCTATAGCGG 59.130 52.381 18.30 6.64 43.26 5.52
1789 2296 1.230324 GCTGAAAAGGCTATAGCGGG 58.770 55.000 18.30 4.63 43.26 6.13
1790 2297 1.230324 CTGAAAAGGCTATAGCGGGC 58.770 55.000 18.30 5.04 43.26 6.13
1791 2298 0.837272 TGAAAAGGCTATAGCGGGCT 59.163 50.000 18.30 7.37 43.26 5.19
1792 2299 2.037251 CTGAAAAGGCTATAGCGGGCTA 59.963 50.000 18.30 2.42 43.26 3.93
1793 2300 2.637872 TGAAAAGGCTATAGCGGGCTAT 59.362 45.455 18.30 16.61 43.26 2.97
1794 2301 3.835978 TGAAAAGGCTATAGCGGGCTATA 59.164 43.478 18.30 17.02 43.26 1.31
1799 2306 1.676746 CTATAGCGGGCTATAGCGGA 58.323 55.000 26.16 7.19 46.26 5.54
1800 2307 1.604755 CTATAGCGGGCTATAGCGGAG 59.395 57.143 26.16 12.52 46.26 4.63
1801 2308 1.668101 ATAGCGGGCTATAGCGGAGC 61.668 60.000 22.13 22.13 42.31 4.70
1813 2320 3.998156 CGGAGCTATAGCCGGCTA 58.002 61.111 36.88 36.88 43.67 3.93
1814 2321 2.494677 CGGAGCTATAGCCGGCTAT 58.505 57.895 42.09 42.09 43.67 2.97
1815 2322 0.818296 CGGAGCTATAGCCGGCTATT 59.182 55.000 44.65 31.45 43.67 1.73
1816 2323 1.204941 CGGAGCTATAGCCGGCTATTT 59.795 52.381 44.65 31.93 43.67 1.40
1817 2324 2.426024 CGGAGCTATAGCCGGCTATTTA 59.574 50.000 44.65 30.51 43.67 1.40
1818 2325 3.119245 CGGAGCTATAGCCGGCTATTTAA 60.119 47.826 44.65 29.85 43.67 1.52
1819 2326 4.619863 CGGAGCTATAGCCGGCTATTTAAA 60.620 45.833 44.65 29.52 43.67 1.52
1820 2327 5.243207 GGAGCTATAGCCGGCTATTTAAAA 58.757 41.667 44.65 29.19 43.38 1.52
1821 2328 5.121925 GGAGCTATAGCCGGCTATTTAAAAC 59.878 44.000 44.65 30.15 43.38 2.43
1822 2329 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
1823 2330 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
1824 2331 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
1825 2332 7.549488 AGCTATAGCCGGCTATTTAAAACTATG 59.451 37.037 44.65 24.19 43.38 2.23
1826 2333 7.548075 GCTATAGCCGGCTATTTAAAACTATGA 59.452 37.037 44.65 25.48 39.65 2.15
1827 2334 7.668525 ATAGCCGGCTATTTAAAACTATGAC 57.331 36.000 37.79 0.00 35.92 3.06
1828 2335 5.433526 AGCCGGCTATTTAAAACTATGACA 58.566 37.500 31.86 0.00 0.00 3.58
1903 2410 1.648504 GATGCCTCAAATTTGCAGCC 58.351 50.000 21.94 9.53 38.58 4.85
1961 2468 2.925578 TAGCGCGCTCTACTTTACAA 57.074 45.000 40.23 13.67 0.00 2.41
2037 2548 0.250597 GCGTGAGGTAGTTTTGGGGT 60.251 55.000 0.00 0.00 0.00 4.95
2071 2582 5.464722 AGATGCTCTAATGTAGCGATTGTTG 59.535 40.000 0.00 0.00 43.11 3.33
2306 2964 5.300286 AGGTTGCCTATTGAATTAGTCATGC 59.700 40.000 0.00 0.00 30.66 4.06
2380 3045 8.687292 ATGCAGAAACATCTCATGTAATATGT 57.313 30.769 0.00 0.00 44.07 2.29
2509 3367 2.945008 CTCACTGAGCCTTTTTGTGTGA 59.055 45.455 0.00 0.00 0.00 3.58
2668 3719 5.656859 ACTGTGACACTATCAAGCACCTATA 59.343 40.000 7.20 0.00 39.72 1.31
2669 3720 6.154534 ACTGTGACACTATCAAGCACCTATAA 59.845 38.462 7.20 0.00 39.72 0.98
2672 3723 5.661312 TGACACTATCAAGCACCTATAAGGT 59.339 40.000 0.00 0.00 41.68 3.50
2832 4211 0.807496 GTTGCAGTGAGGATGGAAGC 59.193 55.000 0.00 0.00 0.00 3.86
2978 4357 3.059884 TCACTGTTCGAGCACTTCATTC 58.940 45.455 0.00 0.00 0.00 2.67
3180 4563 8.650490 TCATTCAATGCATCTAGTAGGTAATCA 58.350 33.333 0.00 0.00 0.00 2.57
3332 4715 5.481105 CATCTTTATGTGGCAAATGTTGGT 58.519 37.500 0.00 0.00 0.00 3.67
3622 5346 3.056821 TCTGTCAAATGGAGTACTGGACG 60.057 47.826 0.00 0.00 0.00 4.79
3998 12186 4.422073 TCACAAACCAGACAGAAGTGAT 57.578 40.909 0.00 0.00 30.43 3.06
4049 12237 7.827729 GGAGGAGTTGTTACATTTAGTGGTAAT 59.172 37.037 0.00 0.00 32.63 1.89
4053 12241 9.880157 GAGTTGTTACATTTAGTGGTAATCCTA 57.120 33.333 0.00 0.00 32.63 2.94
4210 12398 1.798223 TGGAGATCGTTTGTTGAAGCG 59.202 47.619 0.00 0.00 37.15 4.68
4262 12450 6.658816 AGGTGATCAAGCAATACACATTAACA 59.341 34.615 0.00 0.00 33.82 2.41
4290 12478 7.062371 GCTATTATGTATACCGACTGCAAAGAG 59.938 40.741 0.00 0.00 0.00 2.85
4462 12651 2.341846 ACGTGGTGTCAAATGAGGTT 57.658 45.000 0.00 0.00 0.00 3.50
4471 12660 5.291128 GGTGTCAAATGAGGTTAGTATGTCG 59.709 44.000 0.00 0.00 0.00 4.35
4472 12661 6.097356 GTGTCAAATGAGGTTAGTATGTCGA 58.903 40.000 0.00 0.00 0.00 4.20
4473 12662 6.253727 GTGTCAAATGAGGTTAGTATGTCGAG 59.746 42.308 0.00 0.00 0.00 4.04
4518 12847 5.122239 GGTTACGTACACATTTTACCTTCCC 59.878 44.000 0.00 0.00 0.00 3.97
4519 12848 4.354893 ACGTACACATTTTACCTTCCCA 57.645 40.909 0.00 0.00 0.00 4.37
4525 12854 7.115663 CGTACACATTTTACCTTCCCATTTTTG 59.884 37.037 0.00 0.00 0.00 2.44
4526 12855 5.762711 ACACATTTTACCTTCCCATTTTTGC 59.237 36.000 0.00 0.00 0.00 3.68
4527 12856 5.762218 CACATTTTACCTTCCCATTTTTGCA 59.238 36.000 0.00 0.00 0.00 4.08
4554 12884 6.247229 TGGCTGGCAATAGTAAAATCTCTA 57.753 37.500 0.00 0.00 0.00 2.43
4633 12964 9.884465 CTAGATTTGTCCACTTTGTAGAAAAAG 57.116 33.333 0.00 0.00 41.91 2.27
4634 12965 8.519799 AGATTTGTCCACTTTGTAGAAAAAGA 57.480 30.769 3.82 0.00 39.12 2.52
4635 12966 9.136323 AGATTTGTCCACTTTGTAGAAAAAGAT 57.864 29.630 3.82 0.00 39.12 2.40
4636 12967 9.185192 GATTTGTCCACTTTGTAGAAAAAGATG 57.815 33.333 3.82 0.00 39.12 2.90
4637 12968 7.639113 TTGTCCACTTTGTAGAAAAAGATGT 57.361 32.000 3.82 0.00 39.12 3.06
4638 12969 7.259290 TGTCCACTTTGTAGAAAAAGATGTC 57.741 36.000 3.82 0.00 39.12 3.06
4639 12970 6.826231 TGTCCACTTTGTAGAAAAAGATGTCA 59.174 34.615 3.82 0.00 39.12 3.58
4640 12971 7.338196 TGTCCACTTTGTAGAAAAAGATGTCAA 59.662 33.333 3.82 0.00 39.12 3.18
4641 12972 8.352942 GTCCACTTTGTAGAAAAAGATGTCAAT 58.647 33.333 3.82 0.00 39.12 2.57
4642 12973 9.567776 TCCACTTTGTAGAAAAAGATGTCAATA 57.432 29.630 3.82 0.00 39.12 1.90
5007 13376 0.109781 CAATCAACAAACGAGCCCCG 60.110 55.000 0.00 0.00 45.44 5.73
5008 13377 1.862602 AATCAACAAACGAGCCCCGC 61.863 55.000 0.00 0.00 43.32 6.13
5009 13378 2.748058 ATCAACAAACGAGCCCCGCT 62.748 55.000 0.00 0.00 43.88 5.52
5010 13379 1.669760 CAACAAACGAGCCCCGCTA 60.670 57.895 0.00 0.00 39.88 4.26
5011 13380 1.375523 AACAAACGAGCCCCGCTAG 60.376 57.895 0.00 0.00 39.88 3.42
5012 13381 2.511600 CAAACGAGCCCCGCTAGG 60.512 66.667 0.00 0.00 39.88 3.02
6092 15089 6.436218 TCTTTTATGAGCAGTACAGTGGTCTA 59.564 38.462 15.21 4.90 43.89 2.59
6285 15284 3.495377 CCGTATCTGAACGTTTGGTCAAA 59.505 43.478 0.46 0.00 41.27 2.69
6489 15489 8.857694 TTTCTATAAACCTGGTCAACTTAAGG 57.142 34.615 7.53 0.00 35.82 2.69
6493 15493 5.382664 AAACCTGGTCAACTTAAGGAAGA 57.617 39.130 7.53 0.00 36.45 2.87
6505 15505 8.095169 TCAACTTAAGGAAGATTGACTTAGGAC 58.905 37.037 7.53 0.00 39.13 3.85
6553 15553 8.185506 TGGAACAAAGTGAGTAGTATGAGTTA 57.814 34.615 0.00 0.00 31.92 2.24
6634 15636 4.343814 TGTCTAGTGTGAACCATTGTCAGA 59.656 41.667 0.00 0.00 0.00 3.27
6732 15746 8.868916 CAATTTGTTTACTTGTGCAAAGTTACT 58.131 29.630 16.02 0.00 34.85 2.24
6796 15812 4.232221 CCACAACTCATTTGATCTTGCAC 58.768 43.478 0.00 0.00 38.73 4.57
6805 15821 7.177216 ACTCATTTGATCTTGCACTTAAATCCA 59.823 33.333 0.00 0.00 0.00 3.41
6810 15826 6.855836 TGATCTTGCACTTAAATCCATTGTC 58.144 36.000 0.00 0.00 0.00 3.18
6811 15827 5.295431 TCTTGCACTTAAATCCATTGTCG 57.705 39.130 0.00 0.00 0.00 4.35
6875 15891 0.313672 ACGCCGTTGCATTTGTGAAT 59.686 45.000 0.00 0.00 37.32 2.57
6878 15894 1.720852 GCCGTTGCATTTGTGAATGAC 59.279 47.619 3.47 0.00 44.37 3.06
6944 15960 4.760047 GCACGTGGGAGCACCGAT 62.760 66.667 18.88 0.00 44.64 4.18
7058 16077 3.986435 AGTAACTTATACACCGGGGAGT 58.014 45.455 12.96 6.14 0.00 3.85
7245 16270 4.918588 AGTGACCGACTGGGAATTTTAAT 58.081 39.130 0.00 0.00 40.75 1.40
7405 16438 9.451002 TCAAAAGGTTCGTTATGTCCATATTTA 57.549 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.181114 TGCACAGGCTTCTCTTGTGT 59.819 50.000 8.55 0.00 41.91 3.72
65 66 7.506938 ACAATCCTCATTTCTCTTTTCTTTGGA 59.493 33.333 0.00 0.00 0.00 3.53
118 120 3.541713 GTAGGAGCGAGGCCCTGG 61.542 72.222 0.00 0.00 32.93 4.45
236 238 1.558756 CAGGTCCTCTCCATCAAGCTT 59.441 52.381 0.00 0.00 0.00 3.74
370 376 5.683681 TCCATGCATGCTAGAACATCTTTA 58.316 37.500 21.69 0.00 0.00 1.85
374 380 4.070009 TCATCCATGCATGCTAGAACATC 58.930 43.478 21.69 0.00 0.00 3.06
392 398 9.512435 TCGTTTAACTAGCACTAACTATTCATC 57.488 33.333 0.00 0.00 0.00 2.92
398 404 8.733458 TCAATCTCGTTTAACTAGCACTAACTA 58.267 33.333 0.00 0.00 0.00 2.24
399 405 7.600065 TCAATCTCGTTTAACTAGCACTAACT 58.400 34.615 0.00 0.00 0.00 2.24
400 406 7.807687 TCAATCTCGTTTAACTAGCACTAAC 57.192 36.000 0.00 0.00 0.00 2.34
401 407 8.869897 CAATCAATCTCGTTTAACTAGCACTAA 58.130 33.333 0.00 0.00 0.00 2.24
402 408 8.248253 TCAATCAATCTCGTTTAACTAGCACTA 58.752 33.333 0.00 0.00 0.00 2.74
403 409 7.097192 TCAATCAATCTCGTTTAACTAGCACT 58.903 34.615 0.00 0.00 0.00 4.40
404 410 7.290857 TCAATCAATCTCGTTTAACTAGCAC 57.709 36.000 0.00 0.00 0.00 4.40
433 447 2.852748 CTCGAGTGAGTTACCAACGAG 58.147 52.381 3.62 0.00 39.51 4.18
534 628 1.810532 GATGCCGACGAGGAGAGTT 59.189 57.895 0.00 0.00 45.00 3.01
535 629 2.473760 CGATGCCGACGAGGAGAGT 61.474 63.158 0.00 0.00 45.00 3.24
673 787 3.712733 ACCCACTCACCTACAAGTAAACA 59.287 43.478 0.00 0.00 0.00 2.83
769 937 1.814793 GAGTCCTTGGCTCCTTGTTC 58.185 55.000 0.00 0.00 0.00 3.18
770 938 0.035458 CGAGTCCTTGGCTCCTTGTT 59.965 55.000 5.84 0.00 29.32 2.83
771 939 0.832135 TCGAGTCCTTGGCTCCTTGT 60.832 55.000 5.84 0.00 29.32 3.16
772 940 0.539051 ATCGAGTCCTTGGCTCCTTG 59.461 55.000 0.00 0.00 29.32 3.61
773 941 1.280457 AATCGAGTCCTTGGCTCCTT 58.720 50.000 0.00 0.00 29.32 3.36
774 942 1.280457 AAATCGAGTCCTTGGCTCCT 58.720 50.000 0.00 0.00 29.32 3.69
775 943 2.981859 TAAATCGAGTCCTTGGCTCC 57.018 50.000 0.00 0.00 29.32 4.70
776 944 3.810386 GGAATAAATCGAGTCCTTGGCTC 59.190 47.826 0.00 0.00 30.71 4.70
777 945 3.456277 AGGAATAAATCGAGTCCTTGGCT 59.544 43.478 0.00 0.00 41.06 4.75
778 946 3.809905 AGGAATAAATCGAGTCCTTGGC 58.190 45.455 0.00 0.00 41.06 4.52
847 1015 5.628797 TTCCTGGCTTTTTGGAAGAAAAT 57.371 34.783 0.00 0.00 35.23 1.82
914 1095 0.034767 GTGGGTAAGTTGTAGGGGGC 60.035 60.000 0.00 0.00 0.00 5.80
952 1133 0.543174 AGCTTCTCCGGTCTGGACTT 60.543 55.000 0.00 0.00 43.74 3.01
953 1134 0.543174 AAGCTTCTCCGGTCTGGACT 60.543 55.000 0.00 0.00 43.74 3.85
1040 1221 4.244802 GAGACGGCGAGCTCGAGG 62.245 72.222 38.74 28.72 43.02 4.63
1041 1222 4.244802 GGAGACGGCGAGCTCGAG 62.245 72.222 38.74 30.43 43.02 4.04
1043 1224 4.838486 GTGGAGACGGCGAGCTCG 62.838 72.222 31.37 31.37 43.27 5.03
1044 1225 4.500116 GGTGGAGACGGCGAGCTC 62.500 72.222 16.62 19.11 0.00 4.09
1062 1243 2.661866 ATCGTTATCGCGGCAGCC 60.662 61.111 6.13 0.00 41.18 4.85
1068 1249 2.546321 GCAGCCATCGTTATCGCG 59.454 61.111 0.00 0.00 36.96 5.87
1124 1305 3.248446 TACTTCAGCGGGTGCCACC 62.248 63.158 4.93 4.93 44.31 4.61
1335 1719 3.373439 GCATGCAAAGACCTAGAGAGTTG 59.627 47.826 14.21 0.00 0.00 3.16
1364 1749 7.868906 ACTTAGCCTAGAACTAGAAGTACAG 57.131 40.000 10.04 2.31 35.21 2.74
1410 1911 3.053831 AGGTTGTTTCATCTACACCCG 57.946 47.619 0.00 0.00 33.70 5.28
1411 1912 4.395231 GCTTAGGTTGTTTCATCTACACCC 59.605 45.833 0.00 0.00 0.00 4.61
1524 2031 1.001815 GCTCTTACAAGTTGCGGCAAA 60.002 47.619 18.23 0.00 0.00 3.68
1641 2148 4.629634 GCCCGCTATTTAAAACATTGCTTT 59.370 37.500 0.00 0.00 0.00 3.51
1642 2149 4.081697 AGCCCGCTATTTAAAACATTGCTT 60.082 37.500 0.00 0.00 0.00 3.91
1643 2150 3.447229 AGCCCGCTATTTAAAACATTGCT 59.553 39.130 0.00 0.00 0.00 3.91
1644 2151 3.780902 AGCCCGCTATTTAAAACATTGC 58.219 40.909 0.00 0.00 0.00 3.56
1645 2152 5.402270 GCATAGCCCGCTATTTAAAACATTG 59.598 40.000 6.48 0.00 37.16 2.82
1646 2153 5.508994 GGCATAGCCCGCTATTTAAAACATT 60.509 40.000 6.48 0.00 44.06 2.71
1647 2154 4.022329 GGCATAGCCCGCTATTTAAAACAT 60.022 41.667 6.48 0.00 44.06 2.71
1648 2155 3.316868 GGCATAGCCCGCTATTTAAAACA 59.683 43.478 6.48 0.00 44.06 2.83
1649 2156 3.897325 GGCATAGCCCGCTATTTAAAAC 58.103 45.455 6.48 0.00 44.06 2.43
1663 2170 0.239347 CCGCTGCTATTTGGCATAGC 59.761 55.000 12.17 12.17 45.28 2.97
1664 2171 1.532868 GTCCGCTGCTATTTGGCATAG 59.467 52.381 0.00 0.00 41.63 2.23
1665 2172 1.593196 GTCCGCTGCTATTTGGCATA 58.407 50.000 0.00 0.00 41.63 3.14
1666 2173 1.103398 GGTCCGCTGCTATTTGGCAT 61.103 55.000 0.00 0.00 41.63 4.40
1667 2174 1.748879 GGTCCGCTGCTATTTGGCA 60.749 57.895 0.00 0.00 40.15 4.92
1668 2175 1.440145 GAGGTCCGCTGCTATTTGGC 61.440 60.000 0.00 0.00 0.00 4.52
1669 2176 0.107703 TGAGGTCCGCTGCTATTTGG 60.108 55.000 0.00 0.00 0.00 3.28
1670 2177 1.737838 TTGAGGTCCGCTGCTATTTG 58.262 50.000 0.00 0.00 0.00 2.32
1671 2178 2.489938 TTTGAGGTCCGCTGCTATTT 57.510 45.000 0.00 0.00 0.00 1.40
1672 2179 2.489938 TTTTGAGGTCCGCTGCTATT 57.510 45.000 0.00 0.00 0.00 1.73
1673 2180 2.092968 TGATTTTGAGGTCCGCTGCTAT 60.093 45.455 0.00 0.00 0.00 2.97
1674 2181 1.277842 TGATTTTGAGGTCCGCTGCTA 59.722 47.619 0.00 0.00 0.00 3.49
1675 2182 0.036732 TGATTTTGAGGTCCGCTGCT 59.963 50.000 0.00 0.00 0.00 4.24
1676 2183 0.449388 CTGATTTTGAGGTCCGCTGC 59.551 55.000 0.00 0.00 0.00 5.25
1677 2184 0.449388 GCTGATTTTGAGGTCCGCTG 59.551 55.000 0.00 0.00 0.00 5.18
1678 2185 0.326264 AGCTGATTTTGAGGTCCGCT 59.674 50.000 0.00 0.00 31.33 5.52
1679 2186 2.024176 TAGCTGATTTTGAGGTCCGC 57.976 50.000 0.00 0.00 0.00 5.54
1680 2187 3.743396 GCTATAGCTGATTTTGAGGTCCG 59.257 47.826 17.75 0.00 38.21 4.79
1681 2188 3.743396 CGCTATAGCTGATTTTGAGGTCC 59.257 47.826 21.98 0.00 39.32 4.46
1682 2189 3.743396 CCGCTATAGCTGATTTTGAGGTC 59.257 47.826 21.98 0.00 39.32 3.85
1683 2190 3.388024 TCCGCTATAGCTGATTTTGAGGT 59.612 43.478 21.98 0.00 39.32 3.85
1684 2191 3.993081 CTCCGCTATAGCTGATTTTGAGG 59.007 47.826 21.98 12.29 39.32 3.86
1685 2192 3.431572 GCTCCGCTATAGCTGATTTTGAG 59.568 47.826 21.98 15.47 39.32 3.02
1686 2193 3.393800 GCTCCGCTATAGCTGATTTTGA 58.606 45.455 21.98 7.47 39.32 2.69
1687 2194 3.802722 GCTCCGCTATAGCTGATTTTG 57.197 47.619 21.98 10.29 39.32 2.44
1699 2206 2.341101 GCCCGCTATAGCTCCGCTA 61.341 63.158 21.98 0.00 45.55 4.26
1700 2207 2.766306 TAGCCCGCTATAGCTCCGCT 62.766 60.000 24.41 24.41 43.41 5.52
1701 2208 1.668101 ATAGCCCGCTATAGCTCCGC 61.668 60.000 21.98 18.46 40.56 5.54
1702 2209 1.604755 CTATAGCCCGCTATAGCTCCG 59.395 57.143 23.85 10.15 46.26 4.63
1708 2215 1.112113 GCCTGCTATAGCCCGCTATA 58.888 55.000 21.84 14.20 39.65 1.31
1709 2216 0.616111 AGCCTGCTATAGCCCGCTAT 60.616 55.000 25.96 13.46 40.93 2.97
1710 2217 0.039180 TAGCCTGCTATAGCCCGCTA 59.961 55.000 26.87 26.87 42.16 4.26
1711 2218 0.616111 ATAGCCTGCTATAGCCCGCT 60.616 55.000 28.43 28.43 43.69 5.52
1712 2219 1.067821 CTATAGCCTGCTATAGCCCGC 59.932 57.143 25.26 20.87 46.26 6.13
1718 2225 2.820728 TCCCGCTATAGCCTGCTATA 57.179 50.000 19.00 15.94 39.65 1.31
1719 2226 1.938585 TTCCCGCTATAGCCTGCTAT 58.061 50.000 19.00 15.41 41.58 2.97
1720 2227 1.712056 TTTCCCGCTATAGCCTGCTA 58.288 50.000 19.00 0.64 37.91 3.49
1721 2228 1.059913 ATTTCCCGCTATAGCCTGCT 58.940 50.000 19.00 0.00 37.91 4.24
1722 2229 1.897560 AATTTCCCGCTATAGCCTGC 58.102 50.000 19.00 0.00 37.91 4.85
1723 2230 6.170506 TGTATAAATTTCCCGCTATAGCCTG 58.829 40.000 19.00 10.18 37.91 4.85
1724 2231 6.368779 TGTATAAATTTCCCGCTATAGCCT 57.631 37.500 19.00 0.00 37.91 4.58
1725 2232 6.821665 TCATGTATAAATTTCCCGCTATAGCC 59.178 38.462 19.00 1.80 37.91 3.93
1726 2233 7.549488 ACTCATGTATAAATTTCCCGCTATAGC 59.451 37.037 15.09 15.09 37.78 2.97
1727 2234 9.088512 GACTCATGTATAAATTTCCCGCTATAG 57.911 37.037 0.00 0.00 0.00 1.31
1728 2235 8.038944 GGACTCATGTATAAATTTCCCGCTATA 58.961 37.037 0.00 0.00 0.00 1.31
1729 2236 6.879458 GGACTCATGTATAAATTTCCCGCTAT 59.121 38.462 0.00 0.00 0.00 2.97
1730 2237 6.183361 TGGACTCATGTATAAATTTCCCGCTA 60.183 38.462 0.00 0.00 0.00 4.26
1731 2238 5.063880 GGACTCATGTATAAATTTCCCGCT 58.936 41.667 0.00 0.00 0.00 5.52
1732 2239 4.819630 TGGACTCATGTATAAATTTCCCGC 59.180 41.667 0.00 0.00 0.00 6.13
1733 2240 7.510549 AATGGACTCATGTATAAATTTCCCG 57.489 36.000 0.00 0.00 33.18 5.14
1735 2242 9.899226 GCTAAATGGACTCATGTATAAATTTCC 57.101 33.333 0.00 0.00 33.18 3.13
1736 2243 9.599322 CGCTAAATGGACTCATGTATAAATTTC 57.401 33.333 0.00 0.00 33.18 2.17
1737 2244 8.567948 CCGCTAAATGGACTCATGTATAAATTT 58.432 33.333 0.00 0.00 33.18 1.82
1738 2245 7.308589 GCCGCTAAATGGACTCATGTATAAATT 60.309 37.037 0.00 0.00 33.18 1.82
1739 2246 6.149474 GCCGCTAAATGGACTCATGTATAAAT 59.851 38.462 0.00 0.00 33.18 1.40
1740 2247 5.468746 GCCGCTAAATGGACTCATGTATAAA 59.531 40.000 0.00 0.00 33.18 1.40
1741 2248 4.994852 GCCGCTAAATGGACTCATGTATAA 59.005 41.667 0.00 0.00 33.18 0.98
1742 2249 4.039852 TGCCGCTAAATGGACTCATGTATA 59.960 41.667 0.00 0.00 33.18 1.47
1743 2250 3.181455 TGCCGCTAAATGGACTCATGTAT 60.181 43.478 0.00 0.00 33.18 2.29
1744 2251 2.169561 TGCCGCTAAATGGACTCATGTA 59.830 45.455 0.00 0.00 33.18 2.29
1745 2252 1.065491 TGCCGCTAAATGGACTCATGT 60.065 47.619 0.00 0.00 33.18 3.21
1746 2253 1.331756 GTGCCGCTAAATGGACTCATG 59.668 52.381 0.00 0.00 33.18 3.07
1747 2254 1.668419 GTGCCGCTAAATGGACTCAT 58.332 50.000 0.00 0.00 34.56 2.90
1748 2255 0.392461 GGTGCCGCTAAATGGACTCA 60.392 55.000 0.00 0.00 0.00 3.41
1749 2256 1.095807 GGGTGCCGCTAAATGGACTC 61.096 60.000 0.00 0.00 0.00 3.36
1750 2257 1.077716 GGGTGCCGCTAAATGGACT 60.078 57.895 0.00 0.00 0.00 3.85
1751 2258 1.077716 AGGGTGCCGCTAAATGGAC 60.078 57.895 0.00 0.00 0.00 4.02
1752 2259 1.077787 CAGGGTGCCGCTAAATGGA 60.078 57.895 0.00 0.00 0.00 3.41
1753 2260 2.774799 GCAGGGTGCCGCTAAATGG 61.775 63.158 0.00 0.00 37.42 3.16
1754 2261 1.750399 AGCAGGGTGCCGCTAAATG 60.750 57.895 0.00 0.00 46.52 2.32
1755 2262 1.750399 CAGCAGGGTGCCGCTAAAT 60.750 57.895 0.00 0.00 46.52 1.40
1756 2263 2.359850 CAGCAGGGTGCCGCTAAA 60.360 61.111 0.00 0.00 46.52 1.85
1757 2264 2.404566 TTTCAGCAGGGTGCCGCTAA 62.405 55.000 0.00 0.00 46.52 3.09
1758 2265 2.404566 TTTTCAGCAGGGTGCCGCTA 62.405 55.000 0.00 0.00 46.52 4.26
1759 2266 3.790416 TTTTCAGCAGGGTGCCGCT 62.790 57.895 0.00 0.00 46.52 5.52
1760 2267 3.273080 CTTTTCAGCAGGGTGCCGC 62.273 63.158 0.00 0.00 46.52 6.53
1761 2268 2.629656 CCTTTTCAGCAGGGTGCCG 61.630 63.158 0.00 0.00 46.52 5.69
1762 2269 2.935740 GCCTTTTCAGCAGGGTGCC 61.936 63.158 0.00 0.00 46.52 5.01
1763 2270 0.609131 TAGCCTTTTCAGCAGGGTGC 60.609 55.000 2.17 0.00 42.32 5.01
1764 2271 2.134789 ATAGCCTTTTCAGCAGGGTG 57.865 50.000 2.17 0.00 42.32 4.61
1765 2272 2.422093 GCTATAGCCTTTTCAGCAGGGT 60.422 50.000 14.13 0.00 44.56 4.34
1766 2273 2.225467 GCTATAGCCTTTTCAGCAGGG 58.775 52.381 14.13 0.00 34.31 4.45
1767 2274 1.869767 CGCTATAGCCTTTTCAGCAGG 59.130 52.381 19.00 0.00 37.91 4.85
1768 2275 1.869767 CCGCTATAGCCTTTTCAGCAG 59.130 52.381 19.00 0.81 37.91 4.24
1769 2276 1.475034 CCCGCTATAGCCTTTTCAGCA 60.475 52.381 19.00 0.00 37.91 4.41
1770 2277 1.230324 CCCGCTATAGCCTTTTCAGC 58.770 55.000 19.00 0.00 37.91 4.26
1771 2278 1.202698 AGCCCGCTATAGCCTTTTCAG 60.203 52.381 19.00 2.99 37.91 3.02
1772 2279 0.837272 AGCCCGCTATAGCCTTTTCA 59.163 50.000 19.00 0.00 37.91 2.69
1773 2280 2.833631 TAGCCCGCTATAGCCTTTTC 57.166 50.000 19.00 4.36 37.91 2.29
1774 2281 4.473477 CTATAGCCCGCTATAGCCTTTT 57.527 45.455 23.85 5.54 46.26 2.27
1781 2288 1.676746 CTCCGCTATAGCCCGCTATA 58.323 55.000 19.00 14.20 39.65 1.31
1782 2289 1.668101 GCTCCGCTATAGCCCGCTAT 61.668 60.000 19.00 13.46 41.58 2.97
1783 2290 2.341101 GCTCCGCTATAGCCCGCTA 61.341 63.158 19.00 0.00 37.91 4.26
1784 2291 2.766306 TAGCTCCGCTATAGCCCGCT 62.766 60.000 24.41 24.41 41.02 5.52
1785 2292 2.341101 TAGCTCCGCTATAGCCCGC 61.341 63.158 19.00 17.12 41.02 6.13
1786 2293 3.998156 TAGCTCCGCTATAGCCCG 58.002 61.111 19.00 9.44 41.02 6.13
1793 2300 2.341101 GCCGGCTATAGCTCCGCTA 61.341 63.158 22.15 0.00 45.55 4.26
1794 2301 2.766306 TAGCCGGCTATAGCTCCGCT 62.766 60.000 32.24 25.87 44.01 5.52
1795 2302 1.668101 ATAGCCGGCTATAGCTCCGC 61.668 60.000 41.03 20.23 44.01 5.54
1796 2303 0.818296 AATAGCCGGCTATAGCTCCG 59.182 55.000 41.53 18.50 44.89 4.63
1797 2304 4.467198 TTAAATAGCCGGCTATAGCTCC 57.533 45.455 41.53 12.16 40.56 4.70
1798 2305 5.932883 AGTTTTAAATAGCCGGCTATAGCTC 59.067 40.000 41.53 28.58 40.56 4.09
1799 2306 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
1800 2307 7.548075 TCATAGTTTTAAATAGCCGGCTATAGC 59.452 37.037 41.53 29.09 38.20 2.97
1801 2308 8.870879 GTCATAGTTTTAAATAGCCGGCTATAG 58.129 37.037 41.53 22.50 38.20 1.31
1802 2309 8.369424 TGTCATAGTTTTAAATAGCCGGCTATA 58.631 33.333 41.53 28.18 38.20 1.31
1803 2310 7.221450 TGTCATAGTTTTAAATAGCCGGCTAT 58.779 34.615 37.79 37.79 40.63 2.97
1804 2311 6.584488 TGTCATAGTTTTAAATAGCCGGCTA 58.416 36.000 36.88 36.88 0.00 3.93
1805 2312 5.433526 TGTCATAGTTTTAAATAGCCGGCT 58.566 37.500 34.85 34.85 0.00 5.52
1806 2313 5.744666 TGTCATAGTTTTAAATAGCCGGC 57.255 39.130 21.89 21.89 0.00 6.13
1807 2314 8.856247 GTTTTTGTCATAGTTTTAAATAGCCGG 58.144 33.333 0.00 0.00 0.00 6.13
1808 2315 9.400638 TGTTTTTGTCATAGTTTTAAATAGCCG 57.599 29.630 0.00 0.00 0.00 5.52
1814 2321 8.747666 GCATCGTGTTTTTGTCATAGTTTTAAA 58.252 29.630 0.00 0.00 0.00 1.52
1815 2322 7.380065 GGCATCGTGTTTTTGTCATAGTTTTAA 59.620 33.333 0.00 0.00 0.00 1.52
1816 2323 6.858993 GGCATCGTGTTTTTGTCATAGTTTTA 59.141 34.615 0.00 0.00 0.00 1.52
1817 2324 5.689961 GGCATCGTGTTTTTGTCATAGTTTT 59.310 36.000 0.00 0.00 0.00 2.43
1818 2325 5.219633 GGCATCGTGTTTTTGTCATAGTTT 58.780 37.500 0.00 0.00 0.00 2.66
1819 2326 4.320935 GGGCATCGTGTTTTTGTCATAGTT 60.321 41.667 0.00 0.00 0.00 2.24
1820 2327 3.190535 GGGCATCGTGTTTTTGTCATAGT 59.809 43.478 0.00 0.00 0.00 2.12
1821 2328 3.190327 TGGGCATCGTGTTTTTGTCATAG 59.810 43.478 0.00 0.00 0.00 2.23
1822 2329 3.149981 TGGGCATCGTGTTTTTGTCATA 58.850 40.909 0.00 0.00 0.00 2.15
1823 2330 1.959985 TGGGCATCGTGTTTTTGTCAT 59.040 42.857 0.00 0.00 0.00 3.06
1824 2331 1.393603 TGGGCATCGTGTTTTTGTCA 58.606 45.000 0.00 0.00 0.00 3.58
1825 2332 2.500509 TTGGGCATCGTGTTTTTGTC 57.499 45.000 0.00 0.00 0.00 3.18
1826 2333 2.753296 CATTGGGCATCGTGTTTTTGT 58.247 42.857 0.00 0.00 0.00 2.83
1827 2334 1.460359 GCATTGGGCATCGTGTTTTTG 59.540 47.619 0.00 0.00 43.97 2.44
1828 2335 1.794512 GCATTGGGCATCGTGTTTTT 58.205 45.000 0.00 0.00 43.97 1.94
1878 2385 2.861935 GCAAATTTGAGGCATCGGATTG 59.138 45.455 22.31 0.00 0.00 2.67
1885 2392 0.251073 GGGCTGCAAATTTGAGGCAT 59.749 50.000 28.25 0.00 36.87 4.40
1942 2449 2.523015 GTTGTAAAGTAGAGCGCGCTA 58.477 47.619 36.69 18.13 0.00 4.26
1946 2453 3.852162 GCGTTGTAAAGTAGAGCGC 57.148 52.632 0.00 0.00 43.34 5.92
1947 2454 1.654105 CAGGCGTTGTAAAGTAGAGCG 59.346 52.381 0.00 0.00 0.00 5.03
2163 2821 3.138304 GTGCCAACAGTGATTGTGTCTA 58.862 45.455 0.00 0.00 40.74 2.59
2832 4211 3.750130 AGCTAGAATATCCGCAATGCAAG 59.250 43.478 5.91 0.00 0.00 4.01
2910 4289 9.125026 CCAAAGAGGTTTATATGTTTAGCATCT 57.875 33.333 0.00 0.00 38.94 2.90
2922 4301 9.627123 CCATCAAATACTCCAAAGAGGTTTATA 57.373 33.333 0.00 0.00 45.11 0.98
2968 4347 5.786401 ATAAACGAGACAGAATGAAGTGC 57.214 39.130 0.00 0.00 39.69 4.40
2978 4357 7.869016 TTAGTCTGAACAATAAACGAGACAG 57.131 36.000 0.00 0.00 33.70 3.51
3180 4563 8.934697 TGAGAATTACCATTAGTTACTATGGCT 58.065 33.333 15.66 8.22 37.69 4.75
3332 4715 3.319689 TCGATATTACAGCCCGTGAATCA 59.680 43.478 0.00 0.00 0.00 2.57
3683 5457 7.978975 GGCATTTTCAGGTGCTGTTTTATATAA 59.021 33.333 0.00 0.00 41.04 0.98
3998 12186 1.218047 CTCAATCCGTTCCCGCTCA 59.782 57.895 0.00 0.00 0.00 4.26
4049 12237 3.904965 TCACCACATAACCAGTGTTAGGA 59.095 43.478 4.37 0.00 40.31 2.94
4053 12241 6.206634 CAGTAAATCACCACATAACCAGTGTT 59.793 38.462 0.00 0.00 38.52 3.32
4139 12327 0.890683 CCCTCCATGTTCCTGCAAAC 59.109 55.000 0.00 0.00 0.00 2.93
4210 12398 0.746659 AGGCTCTGCAACAACAAACC 59.253 50.000 0.00 0.00 0.00 3.27
4262 12450 6.280855 TGCAGTCGGTATACATAATAGCAT 57.719 37.500 5.01 0.00 38.27 3.79
4272 12460 3.119245 TGGTCTCTTTGCAGTCGGTATAC 60.119 47.826 0.00 0.00 0.00 1.47
4290 12478 5.473504 CCTAGGGCATTATTGTGTAATGGTC 59.526 44.000 0.00 0.00 35.92 4.02
4462 12651 8.916062 TGGAATTTGGTATTACTCGACATACTA 58.084 33.333 0.00 0.00 0.00 1.82
4471 12660 6.764560 ACCGTGTATGGAATTTGGTATTACTC 59.235 38.462 0.00 0.00 0.00 2.59
4472 12661 6.655930 ACCGTGTATGGAATTTGGTATTACT 58.344 36.000 0.00 0.00 0.00 2.24
4473 12662 6.930667 ACCGTGTATGGAATTTGGTATTAC 57.069 37.500 0.00 0.00 0.00 1.89
4518 12847 2.273557 GCCAGCCATAGTGCAAAAATG 58.726 47.619 0.00 0.00 0.00 2.32
4519 12848 1.901159 TGCCAGCCATAGTGCAAAAAT 59.099 42.857 0.00 0.00 0.00 1.82
4525 12854 1.972872 ACTATTGCCAGCCATAGTGC 58.027 50.000 13.81 0.00 0.00 4.40
4526 12855 6.488006 AGATTTTACTATTGCCAGCCATAGTG 59.512 38.462 20.76 0.00 32.69 2.74
4527 12856 6.605119 AGATTTTACTATTGCCAGCCATAGT 58.395 36.000 17.44 17.44 34.58 2.12
4554 12884 1.215423 AGTTCCCCAAGAAAGTGCACT 59.785 47.619 15.25 15.25 35.85 4.40
4637 12968 9.981460 TGGTGATATTAGCTCTCTAGATATTGA 57.019 33.333 0.00 0.00 0.00 2.57
4641 12972 9.679661 CTCTTGGTGATATTAGCTCTCTAGATA 57.320 37.037 0.00 0.00 0.00 1.98
4642 12973 8.170061 ACTCTTGGTGATATTAGCTCTCTAGAT 58.830 37.037 0.00 0.00 0.00 1.98
4643 12974 7.522542 ACTCTTGGTGATATTAGCTCTCTAGA 58.477 38.462 0.00 0.00 0.00 2.43
4644 12975 7.446931 TGACTCTTGGTGATATTAGCTCTCTAG 59.553 40.741 0.00 0.00 0.00 2.43
4645 12976 7.290813 TGACTCTTGGTGATATTAGCTCTCTA 58.709 38.462 0.00 0.00 0.00 2.43
4646 12977 6.132658 TGACTCTTGGTGATATTAGCTCTCT 58.867 40.000 0.00 0.00 0.00 3.10
4647 12978 6.398234 TGACTCTTGGTGATATTAGCTCTC 57.602 41.667 0.00 0.00 0.00 3.20
4959 13328 1.275573 GGGTGTTGGAGACCTAGTGTC 59.724 57.143 3.84 3.84 44.82 3.67
4961 13330 0.246635 CGGGTGTTGGAGACCTAGTG 59.753 60.000 0.00 0.00 33.58 2.74
4962 13331 1.542187 GCGGGTGTTGGAGACCTAGT 61.542 60.000 0.00 0.00 33.58 2.57
4964 13333 2.642254 CGCGGGTGTTGGAGACCTA 61.642 63.158 0.00 0.00 33.58 3.08
4966 13335 4.309950 ACGCGGGTGTTGGAGACC 62.310 66.667 12.47 0.00 0.00 3.85
5012 13381 1.810030 GTGTAGTGGCTGTAGCGGC 60.810 63.158 0.00 0.00 43.26 6.53
5013 13382 1.516386 CGTGTAGTGGCTGTAGCGG 60.516 63.158 0.00 0.00 43.26 5.52
5014 13383 0.523546 CTCGTGTAGTGGCTGTAGCG 60.524 60.000 0.00 0.00 43.26 4.26
6092 15089 9.598517 TCAACTTTCTTTATTTGTGCAAAAGAT 57.401 25.926 10.49 1.58 38.61 2.40
6302 15301 8.821147 TTAGTGCTAGAACTTTGAAAATACGA 57.179 30.769 9.19 0.00 0.00 3.43
6483 15482 6.864342 TCGTCCTAAGTCAATCTTCCTTAAG 58.136 40.000 0.00 0.00 37.56 1.85
6484 15483 6.845758 TCGTCCTAAGTCAATCTTCCTTAA 57.154 37.500 0.00 0.00 37.56 1.85
6488 15488 5.420409 ACATTCGTCCTAAGTCAATCTTCC 58.580 41.667 0.00 0.00 37.56 3.46
6489 15489 7.481642 TCTACATTCGTCCTAAGTCAATCTTC 58.518 38.462 0.00 0.00 37.56 2.87
6493 15493 7.171630 AGTTCTACATTCGTCCTAAGTCAAT 57.828 36.000 0.00 0.00 0.00 2.57
6584 15586 4.860802 AGTTCAATACATCACATCCCCA 57.139 40.909 0.00 0.00 0.00 4.96
6586 15588 5.647658 TGTCAAGTTCAATACATCACATCCC 59.352 40.000 0.00 0.00 0.00 3.85
6634 15636 0.733729 TTGGTTTGCGTAACTGCGTT 59.266 45.000 2.12 0.02 36.93 4.84
6697 15711 8.225107 GCACAAGTAAACAAATTGTAGATCGTA 58.775 33.333 0.00 0.00 35.47 3.43
6703 15717 8.406172 ACTTTGCACAAGTAAACAAATTGTAG 57.594 30.769 0.00 0.00 35.47 2.74
6763 15779 7.563906 TCAAATGAGTTGTGGGAAAGAAAATT 58.436 30.769 0.00 0.00 38.47 1.82
6772 15788 3.507233 GCAAGATCAAATGAGTTGTGGGA 59.493 43.478 0.00 0.00 38.47 4.37
6779 15795 7.177216 TGGATTTAAGTGCAAGATCAAATGAGT 59.823 33.333 0.00 0.00 0.00 3.41
6796 15812 3.192422 TGGCAACCGACAATGGATTTAAG 59.808 43.478 0.00 0.00 0.00 1.85
6805 15821 3.129871 CACAAATTTGGCAACCGACAAT 58.870 40.909 21.74 0.00 40.79 2.71
6810 15826 1.139163 GAGCACAAATTTGGCAACCG 58.861 50.000 24.29 8.99 0.00 4.44
6811 15827 2.237393 TGAGCACAAATTTGGCAACC 57.763 45.000 24.29 16.40 0.00 3.77
6875 15891 1.612146 TTCAGGGCCCATCTCGTCA 60.612 57.895 27.56 0.00 0.00 4.35
6878 15894 2.203126 GCTTCAGGGCCCATCTCG 60.203 66.667 27.56 9.23 0.00 4.04
7245 16270 8.885722 AGTTCACAAAGTGTTCGTAAAATCTTA 58.114 29.630 0.00 0.00 34.79 2.10
8031 17095 6.495181 TGCCAGGTTTGAAGGAAAAATGTATA 59.505 34.615 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.