Multiple sequence alignment - TraesCS6A01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G355300 chr6A 100.000 5241 0 0 1 5241 586330599 586325359 0.000000e+00 9679.0
1 TraesCS6A01G355300 chr6A 97.059 34 1 0 742 775 203544529 203544496 2.040000e-04 58.4
2 TraesCS6A01G355300 chr6D 93.637 2043 86 16 2111 4142 437955934 437953925 0.000000e+00 3013.0
3 TraesCS6A01G355300 chr6D 91.038 1618 85 32 1 1591 437958250 437956666 0.000000e+00 2130.0
4 TraesCS6A01G355300 chr6D 90.695 1021 57 13 4055 5058 437953967 437952968 0.000000e+00 1325.0
5 TraesCS6A01G355300 chr6D 90.541 370 22 6 1590 1946 437956613 437956244 1.320000e-130 477.0
6 TraesCS6A01G355300 chr6B 90.914 2025 125 36 2263 4264 662897808 662895820 0.000000e+00 2665.0
7 TraesCS6A01G355300 chr6B 88.806 2001 109 40 1 1921 662900410 662898445 0.000000e+00 2348.0
8 TraesCS6A01G355300 chr6B 86.580 693 64 11 4 682 663022645 663021968 0.000000e+00 737.0
9 TraesCS6A01G355300 chr6B 86.377 345 37 1 1 345 663008827 663008493 8.290000e-98 368.0
10 TraesCS6A01G355300 chr6B 85.507 345 40 1 1 345 662982726 662982392 8.350000e-93 351.0
11 TraesCS6A01G355300 chr6B 92.991 214 14 1 4964 5176 662894989 662894776 1.420000e-80 311.0
12 TraesCS6A01G355300 chr6B 78.431 357 39 17 1918 2250 662898399 662898057 1.150000e-46 198.0
13 TraesCS6A01G355300 chr6B 97.059 34 1 0 5175 5208 662894764 662894731 2.040000e-04 58.4
14 TraesCS6A01G355300 chr1B 92.063 63 5 0 4272 4334 626087160 626087222 7.230000e-14 89.8
15 TraesCS6A01G355300 chr7D 89.189 74 2 1 4272 4339 567735120 567735193 2.600000e-13 87.9
16 TraesCS6A01G355300 chr7B 84.043 94 6 3 4272 4357 622269330 622269422 1.210000e-11 82.4
17 TraesCS6A01G355300 chr2B 84.270 89 7 2 4266 4347 25020641 25020553 4.350000e-11 80.5
18 TraesCS6A01G355300 chr1D 87.143 70 3 4 4276 4339 222016908 222016839 2.020000e-09 75.0
19 TraesCS6A01G355300 chr1A 86.207 58 8 0 4291 4348 160189839 160189782 4.380000e-06 63.9
20 TraesCS6A01G355300 chr5D 82.051 78 8 4 4268 4339 259539435 259539512 1.580000e-05 62.1
21 TraesCS6A01G355300 chr5D 89.130 46 5 0 4299 4344 546861700 546861655 2.040000e-04 58.4
22 TraesCS6A01G355300 chr7A 86.538 52 7 0 4300 4351 683491082 683491133 2.040000e-04 58.4
23 TraesCS6A01G355300 chr4B 90.698 43 4 0 4300 4342 119264903 119264861 2.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G355300 chr6A 586325359 586330599 5240 True 9679.00 9679 100.00000 1 5241 1 chr6A.!!$R2 5240
1 TraesCS6A01G355300 chr6D 437952968 437958250 5282 True 1736.25 3013 91.47775 1 5058 4 chr6D.!!$R1 5057
2 TraesCS6A01G355300 chr6B 662894731 662900410 5679 True 1116.08 2665 89.64020 1 5208 5 chr6B.!!$R4 5207
3 TraesCS6A01G355300 chr6B 663021968 663022645 677 True 737.00 737 86.58000 4 682 1 chr6B.!!$R3 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 314 0.035439 ACCCATGAACATCACCGACC 60.035 55.000 0.0 0.0 0.00 4.79 F
562 570 0.248843 CACCTTGGTCAGCTCTCTCC 59.751 60.000 0.0 0.0 0.00 3.71 F
1707 1827 0.179169 GTCTTCGACCGTCAGGCTAC 60.179 60.000 0.0 0.0 42.76 3.58 F
1807 1931 1.276421 CACCTTCATTCGTCCCTCTGT 59.724 52.381 0.0 0.0 0.00 3.41 F
3076 3659 0.620556 TTGCCTCTTCCCTGATGTCC 59.379 55.000 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1660 1780 0.243636 GGGAGGCGGTTGAAATGTTG 59.756 55.000 0.00 0.00 0.00 3.33 R
2129 2465 1.068588 TGCAGATATGCCGGTCTACAC 59.931 52.381 10.32 0.00 0.00 2.90 R
3055 3638 0.329596 ACATCAGGGAAGAGGCAACC 59.670 55.000 0.00 0.00 37.17 3.77 R
3360 3948 0.391661 GAGTCATCTGGCGCCAAAGA 60.392 55.000 32.09 25.27 0.00 2.52 R
5069 5986 0.394762 ACGACGGTGGTGGATAGCTA 60.395 55.000 0.00 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.218885 CGAACATATGAAGCGAATCTCTCT 58.781 41.667 10.38 0.00 0.00 3.10
27 28 4.039004 ACATATGAAGCGAATCTCTCTGCT 59.961 41.667 10.38 0.00 36.07 4.24
116 117 1.531128 TGCCAATTGTGCCTGCAGA 60.531 52.632 17.39 0.00 0.00 4.26
125 126 0.599558 GTGCCTGCAGATTTGAGCAA 59.400 50.000 17.39 0.00 40.73 3.91
132 133 4.022935 CCTGCAGATTTGAGCAACAACTTA 60.023 41.667 17.39 0.00 40.73 2.24
151 152 4.935808 ACTTATCCGATTTCACAGTCCAAC 59.064 41.667 0.00 0.00 0.00 3.77
186 187 2.141517 CGCATGTCCATCTCATCCTTC 58.858 52.381 0.00 0.00 0.00 3.46
188 189 3.743584 CGCATGTCCATCTCATCCTTCTT 60.744 47.826 0.00 0.00 0.00 2.52
189 190 3.564644 GCATGTCCATCTCATCCTTCTTG 59.435 47.826 0.00 0.00 0.00 3.02
211 212 2.102749 CGCCGCCACAATCCAATG 59.897 61.111 0.00 0.00 0.00 2.82
250 251 1.542915 CAGGTTGGAGCATTGACTTGG 59.457 52.381 0.00 0.00 0.00 3.61
286 287 2.283834 TCCTGTCCCCATTGGTAATGT 58.716 47.619 1.20 0.00 37.18 2.71
313 314 0.035439 ACCCATGAACATCACCGACC 60.035 55.000 0.00 0.00 0.00 4.79
373 374 2.286872 CACCATCAGACTCCAATCTGC 58.713 52.381 0.00 0.00 44.94 4.26
374 375 1.211457 ACCATCAGACTCCAATCTGCC 59.789 52.381 0.00 0.00 44.94 4.85
384 385 2.108157 AATCTGCCGGCGCGATTA 59.892 55.556 30.78 11.29 36.86 1.75
419 420 1.969923 CCTGGACCTGAGATGATCCTC 59.030 57.143 0.00 0.00 32.06 3.71
485 486 1.064825 TCCAGGAGAAACCCTTGGAC 58.935 55.000 0.00 0.00 40.05 4.02
510 511 2.364002 TCCGTTGCATTCGATCCTATGA 59.636 45.455 12.28 0.00 0.00 2.15
511 512 2.476619 CCGTTGCATTCGATCCTATGAC 59.523 50.000 12.28 0.00 0.00 3.06
562 570 0.248843 CACCTTGGTCAGCTCTCTCC 59.751 60.000 0.00 0.00 0.00 3.71
564 572 0.906756 CCTTGGTCAGCTCTCTCCCA 60.907 60.000 0.00 0.00 0.00 4.37
695 710 0.763652 CTAGACTGCTGCCCCATGAT 59.236 55.000 0.00 0.00 0.00 2.45
744 759 1.116308 TGCCGGTCGATCCAATAGAA 58.884 50.000 1.90 0.00 35.57 2.10
756 771 4.891727 ATAGAACGGCGGCAGCGG 62.892 66.667 13.24 14.51 46.35 5.52
786 801 3.484547 CGGCGAAAGGGTACGTGC 61.485 66.667 0.00 0.00 0.00 5.34
787 802 2.357760 GGCGAAAGGGTACGTGCA 60.358 61.111 5.86 0.00 0.00 4.57
803 818 1.068055 GTGCATTCAGCTTTGGTCCTG 60.068 52.381 0.00 0.00 45.94 3.86
804 819 1.202915 TGCATTCAGCTTTGGTCCTGA 60.203 47.619 0.00 0.00 45.94 3.86
805 820 1.471684 GCATTCAGCTTTGGTCCTGAG 59.528 52.381 0.00 0.00 39.09 3.35
854 880 3.003394 TCTGTCAAGGCCCACATTATG 57.997 47.619 0.00 0.00 0.00 1.90
868 894 3.057736 CACATTATGAGCAGCCCTATTGC 60.058 47.826 0.00 0.00 41.83 3.56
949 975 2.052690 ATCTCCCACGTCACCTCCG 61.053 63.158 0.00 0.00 0.00 4.63
950 976 4.436998 CTCCCACGTCACCTCCGC 62.437 72.222 0.00 0.00 0.00 5.54
1367 1393 0.560688 TTTTCCTTGCCCCTCCACTT 59.439 50.000 0.00 0.00 0.00 3.16
1368 1394 1.451449 TTTCCTTGCCCCTCCACTTA 58.549 50.000 0.00 0.00 0.00 2.24
1547 1606 2.756760 CAATGACATTCTGTTGGGGGAG 59.243 50.000 0.00 0.00 0.00 4.30
1549 1608 1.351017 TGACATTCTGTTGGGGGAGAC 59.649 52.381 0.00 0.00 0.00 3.36
1597 1710 5.220931 GCCAAATAACTTGCTACATCTGGAG 60.221 44.000 0.00 0.00 33.27 3.86
1651 1771 8.420374 TTTCTTCCGTATCTGTACATTCATTC 57.580 34.615 0.00 0.00 0.00 2.67
1652 1772 7.107639 TCTTCCGTATCTGTACATTCATTCA 57.892 36.000 0.00 0.00 0.00 2.57
1706 1826 1.310933 GGTCTTCGACCGTCAGGCTA 61.311 60.000 0.00 0.00 43.14 3.93
1707 1827 0.179169 GTCTTCGACCGTCAGGCTAC 60.179 60.000 0.00 0.00 42.76 3.58
1749 1869 4.715792 TGGTAAATCACATGCCCAATCATT 59.284 37.500 0.00 0.00 0.00 2.57
1764 1884 6.698766 GCCCAATCATTTAAGTAATGCTCTTG 59.301 38.462 0.00 0.00 42.79 3.02
1776 1896 4.913335 AATGCTCTTGCCTGATTATGTG 57.087 40.909 0.00 0.00 38.71 3.21
1807 1931 1.276421 CACCTTCATTCGTCCCTCTGT 59.724 52.381 0.00 0.00 0.00 3.41
1845 1969 1.588861 GTAAGCGAGGCAGTTCGAATC 59.411 52.381 0.00 0.00 43.03 2.52
1950 2165 9.502091 ACAAGTAGTTGTTCATTAGCATTTAGA 57.498 29.630 10.24 0.00 45.00 2.10
1951 2166 9.979270 CAAGTAGTTGTTCATTAGCATTTAGAG 57.021 33.333 1.85 0.00 0.00 2.43
1953 2168 9.593134 AGTAGTTGTTCATTAGCATTTAGAGAG 57.407 33.333 0.00 0.00 0.00 3.20
2008 2225 9.507329 ACTAAATGAAAATAGCTGAAACTCTGA 57.493 29.630 0.00 0.00 0.00 3.27
2014 2231 8.632679 TGAAAATAGCTGAAACTCTGACATTTT 58.367 29.630 0.00 0.00 0.00 1.82
2030 2247 9.567776 TCTGACATTTTAATAGGAAAAGTGTGA 57.432 29.630 2.08 0.00 32.06 3.58
2044 2290 7.707893 AGGAAAAGTGTGAATTTTGACAGATTG 59.292 33.333 0.00 0.00 30.22 2.67
2045 2291 7.706179 GGAAAAGTGTGAATTTTGACAGATTGA 59.294 33.333 0.00 0.00 30.22 2.57
2099 2435 8.923683 CATCTAATGTACTGATATTGCTCACAG 58.076 37.037 0.00 0.00 36.58 3.66
2100 2436 8.011844 TCTAATGTACTGATATTGCTCACAGT 57.988 34.615 0.00 0.00 44.17 3.55
2101 2437 9.131791 TCTAATGTACTGATATTGCTCACAGTA 57.868 33.333 0.00 0.00 42.39 2.74
2102 2438 9.404348 CTAATGTACTGATATTGCTCACAGTAG 57.596 37.037 0.00 0.00 43.35 2.57
2103 2439 6.775594 TGTACTGATATTGCTCACAGTAGT 57.224 37.500 0.00 0.00 43.35 2.73
2104 2440 7.875327 TGTACTGATATTGCTCACAGTAGTA 57.125 36.000 0.00 0.00 43.35 1.82
2105 2441 7.704271 TGTACTGATATTGCTCACAGTAGTAC 58.296 38.462 0.00 0.00 43.35 2.73
2106 2442 7.556635 TGTACTGATATTGCTCACAGTAGTACT 59.443 37.037 0.00 0.00 43.35 2.73
2107 2443 9.053840 GTACTGATATTGCTCACAGTAGTACTA 57.946 37.037 1.57 0.00 43.35 1.82
2109 2445 9.137459 ACTGATATTGCTCACAGTAGTACTAAT 57.863 33.333 3.61 0.00 40.96 1.73
2121 2457 9.252962 CACAGTAGTACTAATTAATAAACCCCG 57.747 37.037 3.61 0.00 0.00 5.73
2132 2468 7.764141 ATTAATAAACCCCGTTTACAAGTGT 57.236 32.000 0.00 0.00 40.16 3.55
2134 2470 6.806388 AATAAACCCCGTTTACAAGTGTAG 57.194 37.500 0.00 0.00 40.16 2.74
2144 2480 5.114081 GTTTACAAGTGTAGACCGGCATAT 58.886 41.667 0.00 0.00 31.64 1.78
2145 2481 3.454371 ACAAGTGTAGACCGGCATATC 57.546 47.619 0.00 0.00 0.00 1.63
2146 2482 3.031736 ACAAGTGTAGACCGGCATATCT 58.968 45.455 0.00 0.00 0.00 1.98
2147 2483 3.181475 ACAAGTGTAGACCGGCATATCTG 60.181 47.826 0.00 0.00 0.00 2.90
2189 2531 2.035832 GCAGAAGCCCTAACTTTGCAAA 59.964 45.455 12.14 12.14 35.55 3.68
2211 2553 4.127171 AGTGCACTCGTGTTTAACAAGAT 58.873 39.130 15.25 2.97 36.12 2.40
2232 2574 9.202273 CAAGATACTAACTCAAGCCATATCTTC 57.798 37.037 0.00 0.00 36.32 2.87
2250 2592 8.933807 CATATCTTCTTAGGACATGCATTACTG 58.066 37.037 0.00 0.00 0.00 2.74
2254 2596 4.225042 TCTTAGGACATGCATTACTGGTGT 59.775 41.667 0.00 0.00 0.00 4.16
2255 2597 2.991250 AGGACATGCATTACTGGTGTC 58.009 47.619 0.00 0.40 38.69 3.67
2261 2837 6.381481 ACATGCATTACTGGTGTCAATATG 57.619 37.500 0.00 0.00 0.00 1.78
2278 2856 7.613411 TGTCAATATGTACACAAATTGGGATGA 59.387 33.333 19.49 5.36 31.66 2.92
2413 2991 7.776933 TCACTTCTTATCTGATCAATTTCCG 57.223 36.000 0.00 0.00 0.00 4.30
2520 3098 6.352016 ACAAGGATATGCATAGTGTAGGAG 57.648 41.667 12.79 0.42 0.00 3.69
2574 3152 4.536765 AGTTTCCTCACAATGGTTTCAGT 58.463 39.130 0.00 0.00 0.00 3.41
2724 3303 6.233434 TGCAGGTTAGATCAATAATAGGCTG 58.767 40.000 0.00 0.00 0.00 4.85
2744 3323 2.635915 TGTTCTCCCAATGTAAGGTCGT 59.364 45.455 0.00 0.00 0.00 4.34
2772 3351 2.564947 CTCAGTTAGCAGACAGTCCCTT 59.435 50.000 0.00 0.00 0.00 3.95
2784 3363 3.490348 ACAGTCCCTTGGTTCAAATCTG 58.510 45.455 0.00 0.00 0.00 2.90
2796 3375 9.398170 CTTGGTTCAAATCTGTATTTTGTACAG 57.602 33.333 8.53 8.53 44.56 2.74
2906 3487 4.579869 TCTAGATTTGTGCCCTTCAGAAC 58.420 43.478 0.00 0.00 0.00 3.01
3003 3584 6.371389 CAGAAAAGATCCGTTGGTAAACTTC 58.629 40.000 0.00 0.00 33.87 3.01
3008 3589 6.210287 AGATCCGTTGGTAAACTTCTCTAG 57.790 41.667 0.00 0.00 33.87 2.43
3055 3638 8.077991 CCAAATGTGTTCACTATGCTAATATGG 58.922 37.037 4.59 0.00 0.00 2.74
3071 3654 0.846427 ATGGGTTGCCTCTTCCCTGA 60.846 55.000 0.00 0.00 41.58 3.86
3076 3659 0.620556 TTGCCTCTTCCCTGATGTCC 59.379 55.000 0.00 0.00 0.00 4.02
3154 3737 8.002984 TCATGTCGATATTCACTTACCAAGTA 57.997 34.615 0.00 0.00 40.46 2.24
3262 3849 5.575157 TGATAAACTTGGTTAGATTGGGCA 58.425 37.500 0.00 0.00 0.00 5.36
3263 3850 6.194235 TGATAAACTTGGTTAGATTGGGCAT 58.806 36.000 0.00 0.00 0.00 4.40
3368 3956 5.163764 TGCTAGATACAATTTGTCTTTGGCG 60.164 40.000 5.07 0.00 0.00 5.69
3371 3959 0.749649 ACAATTTGTCTTTGGCGCCA 59.250 45.000 29.03 29.03 0.00 5.69
3376 3964 0.250684 TTGTCTTTGGCGCCAGATGA 60.251 50.000 30.75 24.07 0.00 2.92
3722 4322 6.381801 CAAACTGATGTTGGTGAGGTAATTC 58.618 40.000 0.00 0.00 36.39 2.17
3734 4334 7.335627 TGGTGAGGTAATTCAGGTTATACTTG 58.664 38.462 0.00 0.00 0.00 3.16
3735 4335 7.181305 TGGTGAGGTAATTCAGGTTATACTTGA 59.819 37.037 0.00 0.00 32.05 3.02
3791 4391 9.521503 GCATGGATTTTCCTTTTATCTCTTTAC 57.478 33.333 0.00 0.00 37.46 2.01
3843 4443 6.723977 TGGTTTTTATTCTCCACTTTGGCTAT 59.276 34.615 0.00 0.00 37.47 2.97
3939 4546 6.293407 CGACAGAAGGAAGTAAGAATTTTGCA 60.293 38.462 0.00 0.00 0.00 4.08
4061 4668 4.445453 CAATCAGAGGATGAATTGGACGA 58.555 43.478 0.00 0.00 42.53 4.20
4124 4731 1.133482 TGGGGATGAGCTCGTGATAGA 60.133 52.381 14.59 0.00 0.00 1.98
4125 4732 1.964223 GGGGATGAGCTCGTGATAGAA 59.036 52.381 14.59 0.00 0.00 2.10
4126 4733 2.288518 GGGGATGAGCTCGTGATAGAAC 60.289 54.545 14.59 0.00 0.00 3.01
4270 4925 5.569059 GTCTTGCATTTTGTCTAACATTCCG 59.431 40.000 0.00 0.00 0.00 4.30
4273 4928 4.759693 TGCATTTTGTCTAACATTCCGTCT 59.240 37.500 0.00 0.00 0.00 4.18
4311 4972 8.460428 AGTGACGTGGTTTTAATTTGAACTAAA 58.540 29.630 0.00 0.00 0.00 1.85
4312 4973 9.074443 GTGACGTGGTTTTAATTTGAACTAAAA 57.926 29.630 0.00 0.00 0.00 1.52
4329 4990 9.349713 TGAACTAAAACCATGTCACTTATTTCT 57.650 29.630 0.00 0.00 0.00 2.52
4344 5005 7.177216 TCACTTATTTCTGAACGGAGGTAGTAA 59.823 37.037 0.00 0.00 0.00 2.24
4384 5045 4.039488 TCATTTGGTGCTTTTCTTGATGCT 59.961 37.500 0.00 0.00 0.00 3.79
4412 5073 7.657354 TGATTTGCGCTATGTACTTGAATATCT 59.343 33.333 9.73 0.00 0.00 1.98
4509 5170 6.972328 TGACATTCTTTGTTACAAAAGACTGC 59.028 34.615 11.80 10.96 44.48 4.40
4520 5181 8.453320 TGTTACAAAAGACTGCATAATCATCTG 58.547 33.333 0.00 0.00 0.00 2.90
4529 5190 2.163010 GCATAATCATCTGGATTGGCCG 59.837 50.000 0.00 0.00 45.70 6.13
4614 5462 3.320610 TGGATGGTTTTGGTTCCTGAA 57.679 42.857 0.00 0.00 0.00 3.02
4615 5463 3.855668 TGGATGGTTTTGGTTCCTGAAT 58.144 40.909 0.00 0.00 0.00 2.57
4649 5497 9.331282 GTAAGATATGCATTGTTCTTAAGGTCT 57.669 33.333 19.61 4.01 33.71 3.85
4660 5540 6.503524 TGTTCTTAAGGTCTGCAAAAATGTC 58.496 36.000 1.85 0.00 0.00 3.06
4678 5558 8.947055 AAAATGTCAATTAAAGCTTGTGAAGT 57.053 26.923 0.00 0.00 0.00 3.01
4699 5585 9.120538 TGAAGTTTAATGTATAAGAATCAGGCC 57.879 33.333 0.00 0.00 0.00 5.19
4706 5592 1.755179 TAAGAATCAGGCCAGCAAGC 58.245 50.000 5.01 0.00 0.00 4.01
4715 5601 4.659172 CCAGCAAGCCCGGGAACA 62.659 66.667 29.31 0.00 0.00 3.18
4759 5645 2.520069 CTAGTGTCCTGTCACCTGAGT 58.480 52.381 0.00 0.00 38.91 3.41
4781 5667 2.931713 CTTAGCCGCATTGCAGCTGC 62.932 60.000 31.89 31.89 42.60 5.25
4789 5675 0.179111 CATTGCAGCTGCCAATGGAG 60.179 55.000 33.29 20.58 41.18 3.86
4836 5752 2.289444 GGACCATTCTCGTGAACTGGAA 60.289 50.000 23.40 0.00 35.91 3.53
4838 5754 3.338249 ACCATTCTCGTGAACTGGAATG 58.662 45.455 23.40 10.64 42.42 2.67
4847 5763 4.274950 TCGTGAACTGGAATGTTTTTCCTC 59.725 41.667 6.00 0.00 39.31 3.71
4870 5786 4.493545 CGAGTGAACTTGCTACGTGTTTTT 60.494 41.667 0.00 0.00 0.00 1.94
4892 5808 8.770438 TTTTTACAAGTTCTGCAATTTCTGTT 57.230 26.923 0.00 0.00 0.00 3.16
4944 5860 8.090831 TCATCTACCATGCTTTGATGATACTAC 58.909 37.037 12.48 0.00 38.67 2.73
4951 5867 5.353938 TGCTTTGATGATACTACCCGTTAC 58.646 41.667 0.00 0.00 0.00 2.50
4952 5868 5.128171 TGCTTTGATGATACTACCCGTTACT 59.872 40.000 0.00 0.00 0.00 2.24
4962 5878 4.159557 ACTACCCGTTACTTTGACCCTTA 58.840 43.478 0.00 0.00 0.00 2.69
5060 5977 2.016393 CTCGCCGTCCTTGCCTGATA 62.016 60.000 0.00 0.00 0.00 2.15
5063 5980 1.459450 GCCGTCCTTGCCTGATAAAA 58.541 50.000 0.00 0.00 0.00 1.52
5069 5986 4.396166 CGTCCTTGCCTGATAAAACAGAAT 59.604 41.667 0.00 0.00 39.94 2.40
5074 5991 6.767902 CCTTGCCTGATAAAACAGAATAGCTA 59.232 38.462 0.00 0.00 39.94 3.32
5085 6002 2.365617 CAGAATAGCTATCCACCACCGT 59.634 50.000 6.72 0.00 0.00 4.83
5090 6007 1.082117 GCTATCCACCACCGTCGTTG 61.082 60.000 0.00 0.00 0.00 4.10
5115 6032 3.053991 TGGGGAGTCAGACAGAACAAAAA 60.054 43.478 2.66 0.00 0.00 1.94
5116 6033 3.565902 GGGGAGTCAGACAGAACAAAAAG 59.434 47.826 2.66 0.00 0.00 2.27
5125 6042 6.017934 TCAGACAGAACAAAAAGCTGTGATAC 60.018 38.462 0.00 0.00 42.47 2.24
5173 6090 1.403687 TTTTGGTTTTGGGGCCTCGG 61.404 55.000 0.84 0.00 0.00 4.63
5178 6108 0.898326 GTTTTGGGGCCTCGGATTGT 60.898 55.000 0.84 0.00 0.00 2.71
5208 6138 4.224370 AGAATCTACTAAACGGCTTGGGAA 59.776 41.667 0.00 0.00 0.00 3.97
5209 6139 3.604875 TCTACTAAACGGCTTGGGAAG 57.395 47.619 0.00 0.00 0.00 3.46
5210 6140 2.901839 TCTACTAAACGGCTTGGGAAGT 59.098 45.455 0.00 0.00 0.00 3.01
5211 6141 2.651382 ACTAAACGGCTTGGGAAGTT 57.349 45.000 0.00 0.00 0.00 2.66
5212 6142 2.501261 ACTAAACGGCTTGGGAAGTTC 58.499 47.619 0.00 0.00 0.00 3.01
5213 6143 1.463444 CTAAACGGCTTGGGAAGTTCG 59.537 52.381 0.00 0.00 34.95 3.95
5214 6144 1.792118 AAACGGCTTGGGAAGTTCGC 61.792 55.000 12.77 12.77 33.15 4.70
5215 6145 2.358737 CGGCTTGGGAAGTTCGCT 60.359 61.111 19.42 0.00 0.00 4.93
5216 6146 1.966451 CGGCTTGGGAAGTTCGCTT 60.966 57.895 19.42 0.00 40.74 4.68
5217 6147 1.581447 GGCTTGGGAAGTTCGCTTG 59.419 57.895 19.42 13.04 37.61 4.01
5218 6148 1.172812 GGCTTGGGAAGTTCGCTTGT 61.173 55.000 19.42 0.00 37.61 3.16
5219 6149 1.519408 GCTTGGGAAGTTCGCTTGTA 58.481 50.000 19.42 0.00 37.61 2.41
5220 6150 2.084546 GCTTGGGAAGTTCGCTTGTAT 58.915 47.619 19.42 0.00 37.61 2.29
5221 6151 2.488153 GCTTGGGAAGTTCGCTTGTATT 59.512 45.455 19.42 0.00 37.61 1.89
5222 6152 3.670627 GCTTGGGAAGTTCGCTTGTATTG 60.671 47.826 19.42 4.83 37.61 1.90
5223 6153 1.810151 TGGGAAGTTCGCTTGTATTGC 59.190 47.619 19.42 0.00 37.61 3.56
5224 6154 1.132453 GGGAAGTTCGCTTGTATTGCC 59.868 52.381 12.42 0.00 37.61 4.52
5225 6155 2.084546 GGAAGTTCGCTTGTATTGCCT 58.915 47.619 0.00 0.00 37.61 4.75
5226 6156 2.159517 GGAAGTTCGCTTGTATTGCCTG 60.160 50.000 0.00 0.00 37.61 4.85
5227 6157 2.472695 AGTTCGCTTGTATTGCCTGA 57.527 45.000 0.00 0.00 0.00 3.86
5228 6158 2.991250 AGTTCGCTTGTATTGCCTGAT 58.009 42.857 0.00 0.00 0.00 2.90
5229 6159 2.679837 AGTTCGCTTGTATTGCCTGATG 59.320 45.455 0.00 0.00 0.00 3.07
5230 6160 2.401583 TCGCTTGTATTGCCTGATGT 57.598 45.000 0.00 0.00 0.00 3.06
5231 6161 2.009051 TCGCTTGTATTGCCTGATGTG 58.991 47.619 0.00 0.00 0.00 3.21
5232 6162 1.064505 CGCTTGTATTGCCTGATGTGG 59.935 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.716353 TGGCTAAGGAGATGGCTAATGAA 59.284 43.478 0.00 0.00 0.00 2.57
30 31 5.549619 ACTATTGGCTAAGGAGATGGCTAAT 59.450 40.000 2.05 0.00 38.83 1.73
116 117 6.515272 AATCGGATAAGTTGTTGCTCAAAT 57.485 33.333 0.00 0.00 37.81 2.32
125 126 4.935808 GGACTGTGAAATCGGATAAGTTGT 59.064 41.667 0.00 0.00 0.00 3.32
132 133 3.074412 GTGTTGGACTGTGAAATCGGAT 58.926 45.455 0.00 0.00 0.00 4.18
211 212 0.740737 GCATATCCCAGCACCAACAC 59.259 55.000 0.00 0.00 0.00 3.32
245 246 1.556911 AGATGGTCGAATCAGCCAAGT 59.443 47.619 0.00 0.00 35.74 3.16
250 251 2.208431 CAGGAAGATGGTCGAATCAGC 58.792 52.381 0.21 0.00 0.00 4.26
286 287 3.320541 GTGATGTTCATGGGTTTGGACAA 59.679 43.478 0.00 0.00 38.57 3.18
313 314 0.690411 AGATCACAGAGGGAGGCAGG 60.690 60.000 0.00 0.00 0.00 4.85
347 348 0.693049 GGAGTCTGATGGTGGTGGTT 59.307 55.000 0.00 0.00 0.00 3.67
373 374 0.300789 GAGAAAAGTAATCGCGCCGG 59.699 55.000 0.00 0.00 0.00 6.13
374 375 1.278238 AGAGAAAAGTAATCGCGCCG 58.722 50.000 0.00 0.00 0.00 6.46
384 385 1.499007 TCCAGGGCCAAAGAGAAAAGT 59.501 47.619 6.18 0.00 0.00 2.66
419 420 3.611986 GCTGTCGTCTGAGAAGAAGATTG 59.388 47.826 0.00 0.00 0.00 2.67
453 454 1.819208 CCTGGATCAAATCGCGCCA 60.819 57.895 0.00 0.00 0.00 5.69
485 486 2.355756 AGGATCGAATGCAACGGATTTG 59.644 45.455 14.70 0.00 38.37 2.32
510 511 1.338107 TGGAGGATGAACAGTCGTGT 58.662 50.000 0.00 0.00 39.19 4.49
511 512 2.341257 CTTGGAGGATGAACAGTCGTG 58.659 52.381 0.00 0.00 0.00 4.35
562 570 1.783031 GCTGATCTGGAAGCGCATGG 61.783 60.000 11.47 0.00 0.00 3.66
564 572 0.393402 TTGCTGATCTGGAAGCGCAT 60.393 50.000 11.47 0.00 42.54 4.73
597 612 1.578423 GGAAGCTGTGCTGTTGAGC 59.422 57.895 0.00 0.00 46.44 4.26
667 682 0.723981 CAGCAGTCTAGCGCTTTTCC 59.276 55.000 18.68 0.94 35.96 3.13
695 710 0.326618 GGGATCCTCACCCTGGAAGA 60.327 60.000 12.58 0.00 43.65 2.87
786 801 2.787994 ACTCAGGACCAAAGCTGAATG 58.212 47.619 0.00 0.00 0.00 2.67
787 802 3.515602 AACTCAGGACCAAAGCTGAAT 57.484 42.857 0.00 0.00 0.00 2.57
854 880 2.592861 CCGGCAATAGGGCTGCTC 60.593 66.667 0.00 0.00 39.82 4.26
958 984 4.301027 GTGGAGGGGATAGGCGCG 62.301 72.222 0.00 0.00 0.00 6.86
1367 1393 8.811994 TGTGGAGCACATTATACAGCTATAATA 58.188 33.333 2.14 0.00 39.62 0.98
1368 1394 7.679783 TGTGGAGCACATTATACAGCTATAAT 58.320 34.615 0.00 0.00 39.62 1.28
1394 1420 0.796312 GACGACGCAAACATGTGGAT 59.204 50.000 0.00 0.00 0.00 3.41
1453 1502 9.946165 GGTAACATTAATACTGCAAAGAATACC 57.054 33.333 0.00 0.00 0.00 2.73
1455 1504 9.688091 TGGGTAACATTAATACTGCAAAGAATA 57.312 29.630 0.00 0.00 39.74 1.75
1459 1508 9.086336 CAATTGGGTAACATTAATACTGCAAAG 57.914 33.333 0.00 0.00 39.74 2.77
1465 1514 8.745590 GTGTTCCAATTGGGTAACATTAATACT 58.254 33.333 25.97 0.00 38.26 2.12
1547 1606 3.782889 AACACAAAACCAAGCTCTGTC 57.217 42.857 0.00 0.00 0.00 3.51
1549 1608 3.632189 GCTAACACAAAACCAAGCTCTG 58.368 45.455 0.00 0.00 0.00 3.35
1651 1771 5.333263 GGCGGTTGAAATGTTGAAAGAATTG 60.333 40.000 0.00 0.00 0.00 2.32
1652 1772 4.749598 GGCGGTTGAAATGTTGAAAGAATT 59.250 37.500 0.00 0.00 0.00 2.17
1660 1780 0.243636 GGGAGGCGGTTGAAATGTTG 59.756 55.000 0.00 0.00 0.00 3.33
1749 1869 7.775093 ACATAATCAGGCAAGAGCATTACTTAA 59.225 33.333 0.00 0.00 44.61 1.85
1764 1884 4.675510 CACCATCAAACACATAATCAGGC 58.324 43.478 0.00 0.00 0.00 4.85
1776 1896 3.578688 GAATGAAGGTGCACCATCAAAC 58.421 45.455 38.74 30.56 45.45 2.93
1807 1931 6.321945 TCGCTTACAGATATAACACCAACCTA 59.678 38.462 0.00 0.00 0.00 3.08
1845 1969 5.851703 CAGCATAAGATCATTTTCATCTGCG 59.148 40.000 0.00 0.00 30.62 5.18
1950 2165 4.166919 AGAACATGCCTATAAAAGCCCTCT 59.833 41.667 0.00 0.00 0.00 3.69
1951 2166 4.276926 CAGAACATGCCTATAAAAGCCCTC 59.723 45.833 0.00 0.00 0.00 4.30
1953 2168 4.574599 CAGAACATGCCTATAAAAGCCC 57.425 45.455 0.00 0.00 0.00 5.19
2004 2221 9.567776 TCACACTTTTCCTATTAAAATGTCAGA 57.432 29.630 0.00 0.00 0.00 3.27
2018 2235 6.773976 TCTGTCAAAATTCACACTTTTCCT 57.226 33.333 0.00 0.00 0.00 3.36
2030 2247 9.750125 GGAGTTTTAAGTCAATCTGTCAAAATT 57.250 29.630 0.22 0.00 0.00 1.82
2031 2248 9.136323 AGGAGTTTTAAGTCAATCTGTCAAAAT 57.864 29.630 0.22 0.00 0.00 1.82
2032 2249 8.519799 AGGAGTTTTAAGTCAATCTGTCAAAA 57.480 30.769 0.22 0.00 0.00 2.44
2033 2250 9.621629 TTAGGAGTTTTAAGTCAATCTGTCAAA 57.378 29.630 0.22 0.00 0.00 2.69
2035 2252 9.793259 ATTTAGGAGTTTTAAGTCAATCTGTCA 57.207 29.630 0.22 0.00 0.00 3.58
2068 2314 8.870116 AGCAATATCAGTACATTAGATGGTGTA 58.130 33.333 0.00 0.00 33.60 2.90
2076 2412 9.404348 CTACTGTGAGCAATATCAGTACATTAG 57.596 37.037 0.00 0.00 40.77 1.73
2081 2417 7.932335 AGTACTACTGTGAGCAATATCAGTAC 58.068 38.462 0.00 0.00 40.77 2.73
2084 2420 9.973450 AATTAGTACTACTGTGAGCAATATCAG 57.027 33.333 0.91 0.00 0.00 2.90
2104 2440 9.519191 ACTTGTAAACGGGGTTTATTAATTAGT 57.481 29.630 4.47 0.00 39.64 2.24
2105 2441 9.777575 CACTTGTAAACGGGGTTTATTAATTAG 57.222 33.333 4.47 0.90 39.64 1.73
2106 2442 9.294614 ACACTTGTAAACGGGGTTTATTAATTA 57.705 29.630 4.47 0.00 39.64 1.40
2107 2443 8.180706 ACACTTGTAAACGGGGTTTATTAATT 57.819 30.769 4.47 0.00 39.64 1.40
2109 2445 8.153550 TCTACACTTGTAAACGGGGTTTATTAA 58.846 33.333 4.47 3.57 39.64 1.40
2121 2457 2.758009 TGCCGGTCTACACTTGTAAAC 58.242 47.619 1.90 0.00 0.00 2.01
2126 2462 3.384668 CAGATATGCCGGTCTACACTTG 58.615 50.000 1.90 0.00 0.00 3.16
2129 2465 1.068588 TGCAGATATGCCGGTCTACAC 59.931 52.381 10.32 0.00 0.00 2.90
2132 2468 3.552132 TTTTGCAGATATGCCGGTCTA 57.448 42.857 10.32 0.00 0.00 2.59
2189 2531 3.527533 TCTTGTTAAACACGAGTGCACT 58.472 40.909 21.88 21.88 38.05 4.40
2198 2540 8.228464 GGCTTGAGTTAGTATCTTGTTAAACAC 58.772 37.037 0.00 0.00 0.00 3.32
2211 2553 8.861086 CCTAAGAAGATATGGCTTGAGTTAGTA 58.139 37.037 0.00 0.00 0.00 1.82
2232 2574 4.517285 ACACCAGTAATGCATGTCCTAAG 58.483 43.478 0.00 0.00 0.00 2.18
2250 2592 6.151985 TCCCAATTTGTGTACATATTGACACC 59.848 38.462 21.72 0.20 43.36 4.16
2254 2596 8.765488 ATCATCCCAATTTGTGTACATATTGA 57.235 30.769 21.72 9.51 43.36 2.57
2255 2597 9.820725 AAATCATCCCAATTTGTGTACATATTG 57.179 29.630 16.35 16.35 41.66 1.90
2520 3098 2.119801 ATGACATCTTGAGGTGTGCC 57.880 50.000 0.85 0.00 0.00 5.01
2724 3303 3.259902 GACGACCTTACATTGGGAGAAC 58.740 50.000 0.00 0.00 0.00 3.01
2744 3323 4.827835 ACTGTCTGCTAACTGAGTAACTGA 59.172 41.667 0.00 0.00 0.00 3.41
2772 3351 7.013750 TGCTGTACAAAATACAGATTTGAACCA 59.986 33.333 16.37 1.67 45.69 3.67
2784 3363 5.880054 AGACCATGTGCTGTACAAAATAC 57.120 39.130 1.96 0.00 43.77 1.89
2796 3375 2.426522 TGCTAACTGAAGACCATGTGC 58.573 47.619 0.00 0.00 0.00 4.57
2886 3467 4.640771 AGTTCTGAAGGGCACAAATCTA 57.359 40.909 0.00 0.00 0.00 1.98
3055 3638 0.329596 ACATCAGGGAAGAGGCAACC 59.670 55.000 0.00 0.00 37.17 3.77
3071 3654 4.024048 CGTTTTGCTGTAAAGAGTGGACAT 60.024 41.667 0.00 0.00 0.00 3.06
3076 3659 3.332761 TGCGTTTTGCTGTAAAGAGTG 57.667 42.857 0.00 0.00 46.63 3.51
3154 3737 1.408702 AGAACGCTTGTTTGCCATGTT 59.591 42.857 0.00 0.00 35.50 2.71
3200 3787 5.767665 TCAAAACACTAGAAGCATAAAGGCA 59.232 36.000 0.00 0.00 35.83 4.75
3258 3845 7.820872 CCATTCTTTTGATTCCATTATATGCCC 59.179 37.037 0.00 0.00 0.00 5.36
3360 3948 0.391661 GAGTCATCTGGCGCCAAAGA 60.392 55.000 32.09 25.27 0.00 2.52
3401 3990 6.711579 TCACTTTAAGTTACAAACAGAAGCG 58.288 36.000 0.00 0.00 0.00 4.68
3406 3995 8.402472 TCCAACATCACTTTAAGTTACAAACAG 58.598 33.333 0.00 0.00 0.00 3.16
3615 4215 6.428083 TCACCACTATCTTAACCTGAAACA 57.572 37.500 0.00 0.00 0.00 2.83
3791 4391 5.461737 TGCGCTGAAAATTAAAGAGGTTTTG 59.538 36.000 9.73 0.00 0.00 2.44
3803 4403 5.497635 AAAAACCATTTGCGCTGAAAATT 57.502 30.435 9.73 0.00 0.00 1.82
3890 4497 7.388776 TCGCTAGCTGAAATATGATTAGCAATT 59.611 33.333 13.93 0.00 36.87 2.32
3891 4498 6.875726 TCGCTAGCTGAAATATGATTAGCAAT 59.124 34.615 13.93 0.00 36.87 3.56
4061 4668 1.068472 GTTCGATCACAGTGTCGTCCT 60.068 52.381 18.77 0.00 38.85 3.85
4124 4731 5.131067 GTTCCTTACTTTCCTCCAGTTGTT 58.869 41.667 0.00 0.00 0.00 2.83
4125 4732 4.445879 GGTTCCTTACTTTCCTCCAGTTGT 60.446 45.833 0.00 0.00 0.00 3.32
4126 4733 4.072839 GGTTCCTTACTTTCCTCCAGTTG 58.927 47.826 0.00 0.00 0.00 3.16
4255 4910 4.446385 CGAACAGACGGAATGTTAGACAAA 59.554 41.667 2.67 0.00 40.86 2.83
4270 4925 3.985925 ACGTCACTTATTTCCGAACAGAC 59.014 43.478 0.00 0.00 0.00 3.51
4273 4928 3.061322 CCACGTCACTTATTTCCGAACA 58.939 45.455 0.00 0.00 0.00 3.18
4311 4972 5.181245 CCGTTCAGAAATAAGTGACATGGTT 59.819 40.000 0.00 0.00 0.00 3.67
4312 4973 4.695455 CCGTTCAGAAATAAGTGACATGGT 59.305 41.667 0.00 0.00 0.00 3.55
4316 4977 4.039973 ACCTCCGTTCAGAAATAAGTGACA 59.960 41.667 0.00 0.00 0.00 3.58
4329 4990 7.771183 ACGTAATTAATTACTACCTCCGTTCA 58.229 34.615 27.48 0.00 40.27 3.18
4358 5019 6.759827 GCATCAAGAAAAGCACCAAATGATAT 59.240 34.615 0.00 0.00 0.00 1.63
4384 5045 4.754322 TCAAGTACATAGCGCAAATCAGA 58.246 39.130 11.47 0.00 0.00 3.27
4412 5073 7.488471 CCGTGTTAACTTTTGTTGTTCCAAATA 59.512 33.333 7.22 0.00 43.41 1.40
4509 5170 3.415212 ACGGCCAATCCAGATGATTATG 58.585 45.455 2.24 0.00 41.85 1.90
4520 5181 2.375146 AGGTTTATTGACGGCCAATCC 58.625 47.619 2.24 0.00 43.96 3.01
4529 5190 7.444487 AGGTCACTTTCAGTAAGGTTTATTGAC 59.556 37.037 0.00 0.00 38.23 3.18
4639 5487 6.707440 TTGACATTTTTGCAGACCTTAAGA 57.293 33.333 3.36 0.00 0.00 2.10
4649 5497 7.279536 TCACAAGCTTTAATTGACATTTTTGCA 59.720 29.630 0.00 0.00 0.00 4.08
4678 5558 7.059788 TGCTGGCCTGATTCTTATACATTAAA 58.940 34.615 14.77 0.00 0.00 1.52
4683 5563 4.454678 CTTGCTGGCCTGATTCTTATACA 58.545 43.478 14.77 0.00 0.00 2.29
4699 5585 2.463589 TAGTGTTCCCGGGCTTGCTG 62.464 60.000 18.49 0.00 0.00 4.41
4706 5592 0.463833 GCCTCATTAGTGTTCCCGGG 60.464 60.000 16.85 16.85 0.00 5.73
4739 5625 2.520069 ACTCAGGTGACAGGACACTAG 58.480 52.381 0.00 0.00 40.22 2.57
4759 5645 2.694065 CTGCAATGCGGCTAAGCTA 58.306 52.632 0.00 0.00 38.13 3.32
4781 5667 4.467438 AGAAATTTGCCCTTACTCCATTGG 59.533 41.667 0.00 0.00 0.00 3.16
4789 5675 7.826690 TCTCATAAACAGAAATTTGCCCTTAC 58.173 34.615 0.00 0.00 0.00 2.34
4836 5752 4.261197 GCAAGTTCACTCGAGGAAAAACAT 60.261 41.667 18.41 5.52 0.00 2.71
4838 5754 3.312697 AGCAAGTTCACTCGAGGAAAAAC 59.687 43.478 18.41 14.05 0.00 2.43
4847 5763 1.767289 ACACGTAGCAAGTTCACTCG 58.233 50.000 0.00 0.00 0.00 4.18
4870 5786 7.333528 AGAACAGAAATTGCAGAACTTGTAA 57.666 32.000 0.00 0.00 35.80 2.41
4930 5846 7.762615 TCAAAGTAACGGGTAGTATCATCAAAG 59.237 37.037 0.00 0.00 0.00 2.77
4944 5860 3.275999 CCATAAGGGTCAAAGTAACGGG 58.724 50.000 0.00 0.00 0.00 5.28
4962 5878 5.263599 TCATCAGGCAAGTGAATTTACCAT 58.736 37.500 0.00 0.00 0.00 3.55
4966 5882 7.446319 CCTATCATCATCAGGCAAGTGAATTTA 59.554 37.037 0.00 0.00 0.00 1.40
5060 5977 5.193679 GGTGGTGGATAGCTATTCTGTTTT 58.806 41.667 13.32 0.00 0.00 2.43
5063 5980 2.365617 CGGTGGTGGATAGCTATTCTGT 59.634 50.000 13.32 0.00 0.00 3.41
5069 5986 0.394762 ACGACGGTGGTGGATAGCTA 60.395 55.000 0.00 0.00 0.00 3.32
5074 5991 2.358247 GCAACGACGGTGGTGGAT 60.358 61.111 15.86 0.00 0.00 3.41
5085 6002 2.525629 TGACTCCCCAGGCAACGA 60.526 61.111 0.00 0.00 46.39 3.85
5090 6007 1.194781 TTCTGTCTGACTCCCCAGGC 61.195 60.000 9.51 0.00 39.13 4.85
5115 6032 2.355513 CCAGCTTCTTGGTATCACAGCT 60.356 50.000 0.00 0.00 33.38 4.24
5116 6033 2.012673 CCAGCTTCTTGGTATCACAGC 58.987 52.381 0.00 0.00 33.38 4.40
5178 6108 5.186409 AGCCGTTTAGTAGATTCTGTTGGTA 59.814 40.000 0.00 0.00 0.00 3.25
5208 6138 2.472695 TCAGGCAATACAAGCGAACT 57.527 45.000 0.00 0.00 0.00 3.01
5209 6139 2.420022 ACATCAGGCAATACAAGCGAAC 59.580 45.455 0.00 0.00 0.00 3.95
5210 6140 2.419673 CACATCAGGCAATACAAGCGAA 59.580 45.455 0.00 0.00 0.00 4.70
5211 6141 2.009051 CACATCAGGCAATACAAGCGA 58.991 47.619 0.00 0.00 0.00 4.93
5212 6142 1.064505 CCACATCAGGCAATACAAGCG 59.935 52.381 0.00 0.00 0.00 4.68
5213 6143 2.857592 CCACATCAGGCAATACAAGC 57.142 50.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.