Multiple sequence alignment - TraesCS6A01G354000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G354000 chr6A 100.000 2690 0 0 1 2690 585443274 585445963 0.000000e+00 4968.0
1 TraesCS6A01G354000 chr6A 93.074 1415 82 10 593 2000 579137765 579139170 0.000000e+00 2056.0
2 TraesCS6A01G354000 chr6A 93.605 172 7 4 2473 2641 616823899 616824069 1.240000e-63 254.0
3 TraesCS6A01G354000 chr6A 94.231 52 3 0 2639 2690 585461531 585461582 2.220000e-11 80.5
4 TraesCS6A01G354000 chr2A 93.092 2041 89 15 1 2030 202073342 202075341 0.000000e+00 2940.0
5 TraesCS6A01G354000 chr2A 91.467 1418 73 8 593 1981 35939204 35937806 0.000000e+00 1905.0
6 TraesCS6A01G354000 chr2A 97.735 618 13 1 1 617 703351151 703351768 0.000000e+00 1062.0
7 TraesCS6A01G354000 chr2A 99.412 170 1 0 2469 2638 592747913 592747744 2.600000e-80 309.0
8 TraesCS6A01G354000 chr5A 95.754 1366 55 3 593 1955 35644289 35642924 0.000000e+00 2198.0
9 TraesCS6A01G354000 chr5A 94.566 1325 62 5 593 1908 650676926 650678249 0.000000e+00 2039.0
10 TraesCS6A01G354000 chr5A 97.411 618 14 2 1 617 566144356 566143740 0.000000e+00 1051.0
11 TraesCS6A01G354000 chr5A 96.386 166 6 0 2473 2638 558977826 558977991 9.490000e-70 274.0
12 TraesCS6A01G354000 chr1A 94.316 1425 49 10 1 1418 520128018 520126619 0.000000e+00 2154.0
13 TraesCS6A01G354000 chr1A 95.292 1317 54 2 593 1903 18104520 18105834 0.000000e+00 2082.0
14 TraesCS6A01G354000 chr7A 94.949 1366 62 6 593 1953 90656523 90657886 0.000000e+00 2134.0
15 TraesCS6A01G354000 chr7A 93.199 1441 68 11 593 2030 662138153 662139566 0.000000e+00 2091.0
16 TraesCS6A01G354000 chr7A 92.688 1313 41 9 1 1310 474516227 474517487 0.000000e+00 1842.0
17 TraesCS6A01G354000 chr7A 97.738 619 11 3 1 617 725469865 725470482 0.000000e+00 1062.0
18 TraesCS6A01G354000 chr7A 95.808 167 7 0 2472 2638 665996848 665996682 1.230000e-68 270.0
19 TraesCS6A01G354000 chr4D 91.244 1439 94 20 619 2030 467822979 467821546 0.000000e+00 1930.0
20 TraesCS6A01G354000 chr4D 93.976 166 10 0 2473 2638 468587882 468588047 4.450000e-63 252.0
21 TraesCS6A01G354000 chr4D 92.857 168 10 2 2472 2638 501046967 501046801 2.680000e-60 243.0
22 TraesCS6A01G354000 chr2B 88.571 1435 103 29 629 2030 57915179 57916585 0.000000e+00 1685.0
23 TraesCS6A01G354000 chr2B 100.000 167 0 0 2472 2638 10225116 10225282 2.600000e-80 309.0
24 TraesCS6A01G354000 chr3A 98.058 618 11 1 1 617 32201861 32202478 0.000000e+00 1074.0
25 TraesCS6A01G354000 chr3A 97.802 182 0 4 2465 2644 729280966 729280787 7.230000e-81 311.0
26 TraesCS6A01G354000 chr3A 94.152 171 9 1 2473 2643 31944174 31944343 2.660000e-65 259.0
27 TraesCS6A01G354000 chr4A 97.258 620 14 3 1 617 584740919 584741538 0.000000e+00 1048.0
28 TraesCS6A01G354000 chr4A 97.254 619 14 3 1 617 684298669 684299286 0.000000e+00 1046.0
29 TraesCS6A01G354000 chr4A 90.785 293 21 3 1744 2030 539141521 539141229 1.170000e-103 387.0
30 TraesCS6A01G354000 chr4A 95.181 166 8 0 2473 2638 340701561 340701726 2.050000e-66 263.0
31 TraesCS6A01G354000 chr4A 94.578 166 9 0 2473 2638 617455383 617455548 9.560000e-65 257.0
32 TraesCS6A01G354000 chr6B 93.851 309 19 0 2164 2472 661467718 661468026 1.460000e-127 466.0
33 TraesCS6A01G354000 chr6D 86.352 381 48 4 2093 2472 437187141 437187518 1.930000e-111 412.0
34 TraesCS6A01G354000 chr6D 100.000 166 0 0 2473 2638 8667077 8667242 9.350000e-80 307.0
35 TraesCS6A01G354000 chr6D 84.466 309 45 2 2164 2472 437197897 437198202 4.350000e-78 302.0
36 TraesCS6A01G354000 chr6D 92.814 167 10 2 2473 2638 445795764 445795929 9.620000e-60 241.0
37 TraesCS6A01G354000 chr6D 94.231 52 3 0 2639 2690 437187511 437187562 2.220000e-11 80.5
38 TraesCS6A01G354000 chr5B 100.000 166 0 0 2473 2638 116668290 116668455 9.350000e-80 307.0
39 TraesCS6A01G354000 chr5B 92.778 180 13 0 2466 2645 571586359 571586180 7.390000e-66 261.0
40 TraesCS6A01G354000 chr4B 95.783 166 7 0 2473 2638 599345872 599346037 4.410000e-68 268.0
41 TraesCS6A01G354000 chr4B 93.976 166 10 0 2473 2638 149989861 149990026 4.450000e-63 252.0
42 TraesCS6A01G354000 chr1D 94.152 171 10 0 2469 2639 451028396 451028226 7.390000e-66 261.0
43 TraesCS6A01G354000 chr1D 94.048 168 7 3 2473 2638 10337407 10337573 4.450000e-63 252.0
44 TraesCS6A01G354000 chr1D 93.976 166 10 0 2473 2638 413947492 413947327 4.450000e-63 252.0
45 TraesCS6A01G354000 chrUn 94.152 171 7 3 2470 2638 273227053 273226884 9.560000e-65 257.0
46 TraesCS6A01G354000 chrUn 92.265 181 10 3 2461 2638 321238350 321238529 1.240000e-63 254.0
47 TraesCS6A01G354000 chrUn 93.293 164 11 0 2475 2638 315492712 315492875 2.680000e-60 243.0
48 TraesCS6A01G354000 chrUn 91.018 167 14 1 2473 2638 378126133 378125967 9.690000e-55 224.0
49 TraesCS6A01G354000 chrUn 90.588 170 15 1 2470 2638 378646058 378646227 9.690000e-55 224.0
50 TraesCS6A01G354000 chrUn 89.474 171 16 2 2473 2642 31695177 31695008 5.830000e-52 215.0
51 TraesCS6A01G354000 chrUn 88.889 171 16 2 2473 2641 135055517 135055348 9.760000e-50 207.0
52 TraesCS6A01G354000 chrUn 84.659 176 19 8 2468 2638 38386367 38386539 4.610000e-38 169.0
53 TraesCS6A01G354000 chrUn 84.571 175 20 7 2473 2642 108724612 108724784 1.660000e-37 167.0
54 TraesCS6A01G354000 chr7D 94.118 170 7 3 2471 2638 634581601 634581769 3.440000e-64 255.0
55 TraesCS6A01G354000 chr5D 94.118 170 7 3 2473 2640 511954706 511954874 3.440000e-64 255.0
56 TraesCS6A01G354000 chr5D 93.976 166 10 0 2473 2638 484260524 484260689 4.450000e-63 252.0
57 TraesCS6A01G354000 chr3D 94.083 169 7 3 2472 2638 365051983 365051816 1.240000e-63 254.0
58 TraesCS6A01G354000 chr3D 94.083 169 7 3 2472 2638 522192324 522192491 1.240000e-63 254.0
59 TraesCS6A01G354000 chr2D 92.614 176 12 1 2464 2638 44468830 44469005 4.450000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G354000 chr6A 585443274 585445963 2689 False 4968 4968 100.000 1 2690 1 chr6A.!!$F2 2689
1 TraesCS6A01G354000 chr6A 579137765 579139170 1405 False 2056 2056 93.074 593 2000 1 chr6A.!!$F1 1407
2 TraesCS6A01G354000 chr2A 202073342 202075341 1999 False 2940 2940 93.092 1 2030 1 chr2A.!!$F1 2029
3 TraesCS6A01G354000 chr2A 35937806 35939204 1398 True 1905 1905 91.467 593 1981 1 chr2A.!!$R1 1388
4 TraesCS6A01G354000 chr2A 703351151 703351768 617 False 1062 1062 97.735 1 617 1 chr2A.!!$F2 616
5 TraesCS6A01G354000 chr5A 35642924 35644289 1365 True 2198 2198 95.754 593 1955 1 chr5A.!!$R1 1362
6 TraesCS6A01G354000 chr5A 650676926 650678249 1323 False 2039 2039 94.566 593 1908 1 chr5A.!!$F2 1315
7 TraesCS6A01G354000 chr5A 566143740 566144356 616 True 1051 1051 97.411 1 617 1 chr5A.!!$R2 616
8 TraesCS6A01G354000 chr1A 520126619 520128018 1399 True 2154 2154 94.316 1 1418 1 chr1A.!!$R1 1417
9 TraesCS6A01G354000 chr1A 18104520 18105834 1314 False 2082 2082 95.292 593 1903 1 chr1A.!!$F1 1310
10 TraesCS6A01G354000 chr7A 90656523 90657886 1363 False 2134 2134 94.949 593 1953 1 chr7A.!!$F1 1360
11 TraesCS6A01G354000 chr7A 662138153 662139566 1413 False 2091 2091 93.199 593 2030 1 chr7A.!!$F3 1437
12 TraesCS6A01G354000 chr7A 474516227 474517487 1260 False 1842 1842 92.688 1 1310 1 chr7A.!!$F2 1309
13 TraesCS6A01G354000 chr7A 725469865 725470482 617 False 1062 1062 97.738 1 617 1 chr7A.!!$F4 616
14 TraesCS6A01G354000 chr4D 467821546 467822979 1433 True 1930 1930 91.244 619 2030 1 chr4D.!!$R1 1411
15 TraesCS6A01G354000 chr2B 57915179 57916585 1406 False 1685 1685 88.571 629 2030 1 chr2B.!!$F2 1401
16 TraesCS6A01G354000 chr3A 32201861 32202478 617 False 1074 1074 98.058 1 617 1 chr3A.!!$F2 616
17 TraesCS6A01G354000 chr4A 584740919 584741538 619 False 1048 1048 97.258 1 617 1 chr4A.!!$F2 616
18 TraesCS6A01G354000 chr4A 684298669 684299286 617 False 1046 1046 97.254 1 617 1 chr4A.!!$F4 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 432 0.400213 TGGAATTGACCGCTCCAACT 59.6 50.0 0.0 0.0 36.3 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 2419 0.035739 GACCCAGTTCCGCTTGGTTA 59.964 55.0 0.0 0.0 42.63 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 87 5.825905 TTTTTGAATGCATTCGTCACATG 57.174 34.783 29.23 0.00 39.62 3.21
277 281 2.736670 AAGGAAGAGCGGGCAATTAT 57.263 45.000 0.00 0.00 0.00 1.28
291 295 3.630312 GGCAATTATACCAACACCGATGT 59.370 43.478 0.00 0.00 42.46 3.06
428 432 0.400213 TGGAATTGACCGCTCCAACT 59.600 50.000 0.00 0.00 36.30 3.16
533 537 1.955778 CAAGTGGCACAAATGAGGACA 59.044 47.619 21.41 0.00 44.16 4.02
561 565 7.341805 AGAGTAAGTGCCATTTCATCTTACAT 58.658 34.615 13.30 2.42 41.29 2.29
562 566 7.281774 AGAGTAAGTGCCATTTCATCTTACATG 59.718 37.037 13.30 0.00 41.29 3.21
563 567 6.886459 AGTAAGTGCCATTTCATCTTACATGT 59.114 34.615 2.69 2.69 41.29 3.21
564 568 6.594788 AAGTGCCATTTCATCTTACATGTT 57.405 33.333 2.30 0.00 0.00 2.71
565 569 5.957798 AGTGCCATTTCATCTTACATGTTG 58.042 37.500 2.30 0.00 0.00 3.33
566 570 5.104374 GTGCCATTTCATCTTACATGTTGG 58.896 41.667 2.30 3.07 0.00 3.77
567 571 4.771577 TGCCATTTCATCTTACATGTTGGT 59.228 37.500 2.30 0.00 0.00 3.67
568 572 5.104374 GCCATTTCATCTTACATGTTGGTG 58.896 41.667 2.30 4.50 0.00 4.17
569 573 5.104374 CCATTTCATCTTACATGTTGGTGC 58.896 41.667 2.30 0.00 0.00 5.01
570 574 5.105635 CCATTTCATCTTACATGTTGGTGCT 60.106 40.000 2.30 0.00 0.00 4.40
571 575 6.095300 CCATTTCATCTTACATGTTGGTGCTA 59.905 38.462 2.30 0.00 0.00 3.49
572 576 7.362834 CCATTTCATCTTACATGTTGGTGCTAA 60.363 37.037 2.30 3.23 0.00 3.09
573 577 6.494893 TTCATCTTACATGTTGGTGCTAAC 57.505 37.500 2.30 0.00 0.00 2.34
574 578 5.804639 TCATCTTACATGTTGGTGCTAACT 58.195 37.500 2.30 0.00 0.00 2.24
575 579 6.237901 TCATCTTACATGTTGGTGCTAACTT 58.762 36.000 2.30 0.00 0.00 2.66
576 580 5.940192 TCTTACATGTTGGTGCTAACTTG 57.060 39.130 2.30 10.95 39.93 3.16
577 581 4.215399 TCTTACATGTTGGTGCTAACTTGC 59.785 41.667 2.30 0.00 38.53 4.01
578 582 2.586425 ACATGTTGGTGCTAACTTGCT 58.414 42.857 11.98 1.36 38.53 3.91
579 583 2.958355 ACATGTTGGTGCTAACTTGCTT 59.042 40.909 11.98 0.00 38.53 3.91
580 584 3.384467 ACATGTTGGTGCTAACTTGCTTT 59.616 39.130 11.98 0.00 38.53 3.51
581 585 3.435105 TGTTGGTGCTAACTTGCTTTG 57.565 42.857 0.51 0.00 0.00 2.77
582 586 2.757868 TGTTGGTGCTAACTTGCTTTGT 59.242 40.909 0.51 0.00 0.00 2.83
583 587 3.194542 TGTTGGTGCTAACTTGCTTTGTT 59.805 39.130 0.51 0.00 0.00 2.83
584 588 4.180817 GTTGGTGCTAACTTGCTTTGTTT 58.819 39.130 0.00 0.00 0.00 2.83
585 589 4.464069 TGGTGCTAACTTGCTTTGTTTT 57.536 36.364 0.00 0.00 0.00 2.43
586 590 4.180057 TGGTGCTAACTTGCTTTGTTTTG 58.820 39.130 0.00 0.00 0.00 2.44
587 591 3.001228 GGTGCTAACTTGCTTTGTTTTGC 59.999 43.478 0.00 0.00 0.00 3.68
588 592 3.865164 GTGCTAACTTGCTTTGTTTTGCT 59.135 39.130 0.00 0.00 31.82 3.91
589 593 4.329801 GTGCTAACTTGCTTTGTTTTGCTT 59.670 37.500 0.00 0.00 31.82 3.91
590 594 4.329528 TGCTAACTTGCTTTGTTTTGCTTG 59.670 37.500 0.00 0.00 31.82 4.01
591 595 4.329801 GCTAACTTGCTTTGTTTTGCTTGT 59.670 37.500 0.00 0.00 0.00 3.16
847 886 7.201696 GGAAGCGAACAATTAAGTTGGATGATA 60.202 37.037 0.00 0.00 42.28 2.15
907 949 3.948719 GCCCCACACCCAACTCGA 61.949 66.667 0.00 0.00 0.00 4.04
1203 1246 6.183361 TGGAATGGGAGAAGAACTTGTTCTTA 60.183 38.462 23.45 11.79 41.02 2.10
1206 1249 9.449719 GAATGGGAGAAGAACTTGTTCTTATTA 57.550 33.333 23.45 13.83 41.02 0.98
1373 1465 0.694444 ATGGGTGGCTTCGGAGGTAT 60.694 55.000 0.00 0.00 0.00 2.73
1379 1471 1.389609 GGCTTCGGAGGTATCGTGGA 61.390 60.000 0.00 0.00 0.00 4.02
1472 1567 4.356405 TGAGTTTTGCTTCTCTCATGGA 57.644 40.909 0.00 0.00 32.95 3.41
1500 1595 3.792736 GCACCTCCGGCCACCATA 61.793 66.667 2.24 0.00 0.00 2.74
1710 1823 9.282247 GAATGATGTGTCTTTCATTTGTGTATC 57.718 33.333 0.24 0.00 41.42 2.24
1752 1865 3.897239 ACTTGGTTGGATGAACTTGTGA 58.103 40.909 0.00 0.00 34.66 3.58
1788 1906 1.131126 CGTGGGCATGAACTTCATCAC 59.869 52.381 0.00 6.64 34.28 3.06
1935 2075 1.745115 ATTTTAGCGCGGCTGCTGA 60.745 52.632 22.96 15.42 46.70 4.26
1970 2110 1.448893 GGCGCCAAACCAGACGATA 60.449 57.895 24.80 0.00 0.00 2.92
2030 2170 1.088340 CGCCTGTTGGAGATGCTCTG 61.088 60.000 0.00 0.00 34.95 3.35
2031 2171 0.251354 GCCTGTTGGAGATGCTCTGA 59.749 55.000 0.00 0.00 34.57 3.27
2032 2172 1.743091 GCCTGTTGGAGATGCTCTGAG 60.743 57.143 0.00 0.00 34.57 3.35
2033 2173 1.554160 CCTGTTGGAGATGCTCTGAGT 59.446 52.381 6.53 0.00 34.57 3.41
2034 2174 2.762887 CCTGTTGGAGATGCTCTGAGTA 59.237 50.000 6.53 1.58 34.57 2.59
2035 2175 3.430098 CCTGTTGGAGATGCTCTGAGTAC 60.430 52.174 6.53 0.00 34.57 2.73
2036 2176 2.164422 TGTTGGAGATGCTCTGAGTACG 59.836 50.000 6.53 0.00 0.00 3.67
2037 2177 2.420058 TGGAGATGCTCTGAGTACGA 57.580 50.000 6.53 0.00 0.00 3.43
2038 2178 2.017782 TGGAGATGCTCTGAGTACGAC 58.982 52.381 6.53 0.00 0.00 4.34
2039 2179 2.294074 GGAGATGCTCTGAGTACGACT 58.706 52.381 6.53 2.99 0.00 4.18
2040 2180 2.289547 GGAGATGCTCTGAGTACGACTC 59.710 54.545 6.53 11.01 45.26 3.36
2041 2181 2.289547 GAGATGCTCTGAGTACGACTCC 59.710 54.545 6.53 0.00 44.44 3.85
2042 2182 1.003331 GATGCTCTGAGTACGACTCCG 60.003 57.143 6.53 6.40 44.44 4.63
2053 2193 2.953669 CGACTCCGTATTGAACCCG 58.046 57.895 0.00 0.00 0.00 5.28
2054 2194 0.452987 CGACTCCGTATTGAACCCGA 59.547 55.000 0.00 0.00 0.00 5.14
2055 2195 1.135315 CGACTCCGTATTGAACCCGAA 60.135 52.381 0.00 0.00 0.00 4.30
2056 2196 2.265683 GACTCCGTATTGAACCCGAAC 58.734 52.381 0.00 0.00 0.00 3.95
2057 2197 1.897802 ACTCCGTATTGAACCCGAACT 59.102 47.619 0.00 0.00 0.00 3.01
2058 2198 2.094338 ACTCCGTATTGAACCCGAACTC 60.094 50.000 0.00 0.00 0.00 3.01
2059 2199 1.894466 TCCGTATTGAACCCGAACTCA 59.106 47.619 0.00 0.00 0.00 3.41
2060 2200 2.498481 TCCGTATTGAACCCGAACTCAT 59.502 45.455 0.00 0.00 0.00 2.90
2061 2201 2.864343 CCGTATTGAACCCGAACTCATC 59.136 50.000 0.00 0.00 0.00 2.92
2069 2209 3.374330 CGAACTCATCGTCGCCAC 58.626 61.111 0.00 0.00 46.52 5.01
2070 2210 2.497092 CGAACTCATCGTCGCCACG 61.497 63.158 0.00 0.00 46.52 4.94
2071 2211 2.789203 GAACTCATCGTCGCCACGC 61.789 63.158 0.00 0.00 46.28 5.34
2082 2222 4.424430 GCCACGCGCAGTACAACG 62.424 66.667 5.73 0.00 37.47 4.10
2091 2231 4.752879 AGTACAACGCCGCCGCAT 62.753 61.111 0.00 0.00 38.22 4.73
2092 2232 4.218478 GTACAACGCCGCCGCATC 62.218 66.667 0.00 0.00 38.22 3.91
2113 2253 4.144418 CGGTCACCGGAAAACCAA 57.856 55.556 8.94 0.00 44.15 3.67
2114 2254 1.946267 CGGTCACCGGAAAACCAAG 59.054 57.895 8.94 0.00 44.15 3.61
2115 2255 0.533308 CGGTCACCGGAAAACCAAGA 60.533 55.000 8.94 0.00 44.15 3.02
2116 2256 1.880646 CGGTCACCGGAAAACCAAGAT 60.881 52.381 8.94 0.00 44.15 2.40
2117 2257 2.613474 CGGTCACCGGAAAACCAAGATA 60.613 50.000 8.94 0.00 44.15 1.98
2118 2258 3.414269 GGTCACCGGAAAACCAAGATAA 58.586 45.455 9.46 0.00 33.11 1.75
2119 2259 3.439129 GGTCACCGGAAAACCAAGATAAG 59.561 47.826 9.46 0.00 33.11 1.73
2120 2260 3.078837 TCACCGGAAAACCAAGATAAGC 58.921 45.455 9.46 0.00 0.00 3.09
2121 2261 3.081804 CACCGGAAAACCAAGATAAGCT 58.918 45.455 9.46 0.00 0.00 3.74
2122 2262 3.081804 ACCGGAAAACCAAGATAAGCTG 58.918 45.455 9.46 0.00 0.00 4.24
2123 2263 3.081804 CCGGAAAACCAAGATAAGCTGT 58.918 45.455 0.00 0.00 0.00 4.40
2124 2264 3.127030 CCGGAAAACCAAGATAAGCTGTC 59.873 47.826 0.00 0.00 0.00 3.51
2125 2265 3.751175 CGGAAAACCAAGATAAGCTGTCA 59.249 43.478 0.00 0.00 0.00 3.58
2126 2266 4.378459 CGGAAAACCAAGATAAGCTGTCAC 60.378 45.833 0.00 0.00 0.00 3.67
2127 2267 4.518970 GGAAAACCAAGATAAGCTGTCACA 59.481 41.667 0.00 0.00 0.00 3.58
2128 2268 5.335191 GGAAAACCAAGATAAGCTGTCACAG 60.335 44.000 0.00 0.00 34.12 3.66
2137 2277 4.567435 CTGTCACAGCTCCTCGTG 57.433 61.111 0.00 0.00 34.34 4.35
2138 2278 1.959848 CTGTCACAGCTCCTCGTGA 59.040 57.895 0.00 0.69 39.77 4.35
2140 2280 2.954611 TCACAGCTCCTCGTGACG 59.045 61.111 0.00 0.00 37.23 4.35
2141 2281 2.807045 CACAGCTCCTCGTGACGC 60.807 66.667 0.00 0.00 35.02 5.19
2142 2282 4.406173 ACAGCTCCTCGTGACGCG 62.406 66.667 3.53 3.53 43.01 6.01
2157 2297 3.453465 GCGCGCGAGAGGAATATC 58.547 61.111 37.18 7.60 0.00 1.63
2158 2298 1.081108 GCGCGCGAGAGGAATATCT 60.081 57.895 37.18 0.00 0.00 1.98
2159 2299 1.068287 GCGCGCGAGAGGAATATCTC 61.068 60.000 37.18 6.74 41.98 2.75
2160 2300 0.238553 CGCGCGAGAGGAATATCTCA 59.761 55.000 28.94 0.00 45.03 3.27
2161 2301 1.727535 CGCGCGAGAGGAATATCTCAG 60.728 57.143 28.94 0.00 45.03 3.35
2162 2302 1.268352 GCGCGAGAGGAATATCTCAGT 59.732 52.381 12.10 0.00 45.03 3.41
2163 2303 2.667171 GCGCGAGAGGAATATCTCAGTC 60.667 54.545 12.10 0.00 45.03 3.51
2164 2304 2.412195 CGCGAGAGGAATATCTCAGTCG 60.412 54.545 0.00 0.00 45.03 4.18
2165 2305 2.550606 GCGAGAGGAATATCTCAGTCGT 59.449 50.000 4.75 0.00 45.03 4.34
2166 2306 3.364565 GCGAGAGGAATATCTCAGTCGTC 60.365 52.174 4.75 0.00 45.03 4.20
2167 2307 3.810386 CGAGAGGAATATCTCAGTCGTCA 59.190 47.826 4.75 0.00 45.03 4.35
2168 2308 4.454161 CGAGAGGAATATCTCAGTCGTCAT 59.546 45.833 4.75 0.00 45.03 3.06
2169 2309 5.616645 CGAGAGGAATATCTCAGTCGTCATG 60.617 48.000 4.75 0.00 45.03 3.07
2170 2310 4.522405 AGAGGAATATCTCAGTCGTCATGG 59.478 45.833 0.00 0.00 38.32 3.66
2171 2311 3.006323 AGGAATATCTCAGTCGTCATGGC 59.994 47.826 0.00 0.00 0.00 4.40
2172 2312 2.713895 ATATCTCAGTCGTCATGGCG 57.286 50.000 14.91 14.91 0.00 5.69
2173 2313 1.675552 TATCTCAGTCGTCATGGCGA 58.324 50.000 20.25 20.25 38.68 5.54
2174 2314 1.035923 ATCTCAGTCGTCATGGCGAT 58.964 50.000 26.96 12.03 43.07 4.58
2175 2315 0.101219 TCTCAGTCGTCATGGCGATG 59.899 55.000 26.96 22.35 43.07 3.84
2176 2316 0.179127 CTCAGTCGTCATGGCGATGT 60.179 55.000 26.96 13.72 43.07 3.06
2177 2317 0.179137 TCAGTCGTCATGGCGATGTC 60.179 55.000 26.96 13.29 43.07 3.06
2178 2318 1.226688 AGTCGTCATGGCGATGTCG 60.227 57.895 26.96 19.02 43.07 4.35
2189 2329 3.490759 GATGTCGCCACTGCCGTG 61.491 66.667 0.56 0.56 40.89 4.94
2197 2337 4.363990 CACTGCCGTGCCTCGTCT 62.364 66.667 0.00 0.00 37.94 4.18
2198 2338 3.616721 ACTGCCGTGCCTCGTCTT 61.617 61.111 0.00 0.00 37.94 3.01
2199 2339 2.811317 CTGCCGTGCCTCGTCTTC 60.811 66.667 0.00 0.00 37.94 2.87
2200 2340 4.717629 TGCCGTGCCTCGTCTTCG 62.718 66.667 0.00 0.00 37.94 3.79
2201 2341 4.415332 GCCGTGCCTCGTCTTCGA 62.415 66.667 0.00 0.00 44.12 3.71
2209 2349 2.780643 TCGTCTTCGAGTACGGCG 59.219 61.111 17.94 4.80 41.35 6.46
2210 2350 1.737735 TCGTCTTCGAGTACGGCGA 60.738 57.895 16.62 9.33 41.35 5.54
2211 2351 1.579626 CGTCTTCGAGTACGGCGAC 60.580 63.158 16.62 7.71 37.52 5.19
2233 2373 2.813908 GGGGCACGAAGCTGTACG 60.814 66.667 6.66 6.66 44.79 3.67
2234 2374 3.488090 GGGCACGAAGCTGTACGC 61.488 66.667 7.87 2.08 44.79 4.42
2267 2407 4.203076 GTACCGGCCGTGCGAGAT 62.203 66.667 26.12 2.55 0.00 2.75
2268 2408 3.896133 TACCGGCCGTGCGAGATC 61.896 66.667 26.12 0.00 0.00 2.75
2280 2420 3.606662 GAGATCGGCCCGCTGCTA 61.607 66.667 0.00 0.00 40.92 3.49
2281 2421 3.151958 GAGATCGGCCCGCTGCTAA 62.152 63.158 0.00 0.00 40.92 3.09
2282 2422 2.967615 GATCGGCCCGCTGCTAAC 60.968 66.667 0.00 0.00 40.92 2.34
2283 2423 4.547367 ATCGGCCCGCTGCTAACC 62.547 66.667 0.00 0.00 40.92 2.85
2286 2426 3.134127 GGCCCGCTGCTAACCAAG 61.134 66.667 0.00 0.00 40.92 3.61
2295 2435 2.171635 GCTAACCAAGCGGAACTGG 58.828 57.895 0.00 0.00 42.53 4.00
2296 2436 1.305930 GCTAACCAAGCGGAACTGGG 61.306 60.000 0.00 0.00 46.42 4.45
2299 2439 2.429930 CCAAGCGGAACTGGGTCA 59.570 61.111 0.00 0.00 34.26 4.02
2300 2440 1.966451 CCAAGCGGAACTGGGTCAC 60.966 63.158 0.00 0.00 34.26 3.67
2301 2441 2.030562 AAGCGGAACTGGGTCACG 59.969 61.111 0.00 0.00 0.00 4.35
2302 2442 3.530910 AAGCGGAACTGGGTCACGG 62.531 63.158 0.00 0.00 0.00 4.94
2306 2446 4.980805 GAACTGGGTCACGGCGCA 62.981 66.667 10.83 0.00 0.00 6.09
2339 2479 3.391382 CTGGGACCCGGACACCTC 61.391 72.222 15.05 0.00 29.82 3.85
2348 2488 3.637273 GGACACCTCCGCCACCTT 61.637 66.667 0.00 0.00 0.00 3.50
2349 2489 2.047179 GACACCTCCGCCACCTTC 60.047 66.667 0.00 0.00 0.00 3.46
2350 2490 3.607370 GACACCTCCGCCACCTTCC 62.607 68.421 0.00 0.00 0.00 3.46
2351 2491 3.322466 CACCTCCGCCACCTTCCT 61.322 66.667 0.00 0.00 0.00 3.36
2352 2492 1.987855 CACCTCCGCCACCTTCCTA 60.988 63.158 0.00 0.00 0.00 2.94
2353 2493 1.003051 ACCTCCGCCACCTTCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
2354 2494 1.338136 ACCTCCGCCACCTTCCTATG 61.338 60.000 0.00 0.00 0.00 2.23
2355 2495 1.447643 CTCCGCCACCTTCCTATGG 59.552 63.158 0.00 0.00 39.16 2.74
2356 2496 2.044806 CTCCGCCACCTTCCTATGGG 62.045 65.000 0.00 0.00 36.41 4.00
2357 2497 2.070039 CCGCCACCTTCCTATGGGA 61.070 63.158 0.00 0.00 40.36 4.37
2358 2498 1.146263 CGCCACCTTCCTATGGGAC 59.854 63.158 0.00 0.00 42.05 4.46
2359 2499 1.532238 GCCACCTTCCTATGGGACC 59.468 63.158 0.00 0.00 42.05 4.46
2360 2500 1.996070 GCCACCTTCCTATGGGACCC 61.996 65.000 2.45 2.45 42.05 4.46
2361 2501 1.696097 CCACCTTCCTATGGGACCCG 61.696 65.000 5.91 0.00 42.05 5.28
2362 2502 2.070650 ACCTTCCTATGGGACCCGC 61.071 63.158 5.91 0.00 42.05 6.13
2363 2503 2.070039 CCTTCCTATGGGACCCGCA 61.070 63.158 5.91 0.00 42.05 5.69
2364 2504 1.418908 CCTTCCTATGGGACCCGCAT 61.419 60.000 5.91 0.00 42.05 4.73
2365 2505 0.250467 CTTCCTATGGGACCCGCATG 60.250 60.000 5.91 0.00 42.05 4.06
2366 2506 0.692756 TTCCTATGGGACCCGCATGA 60.693 55.000 5.91 0.00 42.05 3.07
2367 2507 0.473694 TCCTATGGGACCCGCATGAT 60.474 55.000 5.91 0.00 37.58 2.45
2368 2508 0.036010 CCTATGGGACCCGCATGATC 60.036 60.000 5.91 0.00 37.58 2.92
2369 2509 0.036010 CTATGGGACCCGCATGATCC 60.036 60.000 5.91 0.00 37.58 3.36
2370 2510 0.766288 TATGGGACCCGCATGATCCA 60.766 55.000 5.91 0.00 37.58 3.41
2371 2511 2.060567 ATGGGACCCGCATGATCCAG 62.061 60.000 5.91 0.00 35.72 3.86
2372 2512 2.443394 GGGACCCGCATGATCCAGA 61.443 63.158 0.00 0.00 33.87 3.86
2373 2513 1.070445 GGACCCGCATGATCCAGAG 59.930 63.158 0.00 0.00 32.35 3.35
2374 2514 1.596477 GACCCGCATGATCCAGAGC 60.596 63.158 0.00 0.00 0.00 4.09
2375 2515 2.315781 GACCCGCATGATCCAGAGCA 62.316 60.000 0.00 0.00 0.00 4.26
2376 2516 1.890979 CCCGCATGATCCAGAGCAC 60.891 63.158 0.00 0.00 0.00 4.40
2377 2517 2.242572 CCGCATGATCCAGAGCACG 61.243 63.158 0.00 0.00 0.00 5.34
2378 2518 2.242572 CGCATGATCCAGAGCACGG 61.243 63.158 0.00 0.00 0.00 4.94
2379 2519 2.541120 GCATGATCCAGAGCACGGC 61.541 63.158 0.00 0.00 0.00 5.68
2380 2520 1.890979 CATGATCCAGAGCACGGCC 60.891 63.158 0.00 0.00 0.00 6.13
2381 2521 3.451556 ATGATCCAGAGCACGGCCG 62.452 63.158 26.86 26.86 0.00 6.13
2382 2522 4.899239 GATCCAGAGCACGGCCGG 62.899 72.222 31.76 19.49 0.00 6.13
2400 2540 3.723348 GTTGCCCTGCCGTCGTTC 61.723 66.667 0.00 0.00 0.00 3.95
2431 2571 4.641645 CGGTGGGCTCCAACTGCA 62.642 66.667 7.54 0.00 39.46 4.41
2432 2572 2.985847 GGTGGGCTCCAACTGCAC 60.986 66.667 2.29 0.00 38.38 4.57
2433 2573 3.357079 GTGGGCTCCAACTGCACG 61.357 66.667 0.00 0.00 36.47 5.34
2436 2576 3.730761 GGCTCCAACTGCACGCTG 61.731 66.667 0.00 0.00 0.00 5.18
2437 2577 2.974698 GCTCCAACTGCACGCTGT 60.975 61.111 0.00 0.00 0.00 4.40
2438 2578 2.959357 GCTCCAACTGCACGCTGTC 61.959 63.158 1.83 0.00 0.00 3.51
2439 2579 1.595109 CTCCAACTGCACGCTGTCA 60.595 57.895 1.83 0.00 0.00 3.58
2440 2580 1.563435 CTCCAACTGCACGCTGTCAG 61.563 60.000 1.83 0.00 36.45 3.51
2441 2581 2.610694 CCAACTGCACGCTGTCAGG 61.611 63.158 1.14 4.44 34.76 3.86
2442 2582 2.974698 AACTGCACGCTGTCAGGC 60.975 61.111 1.14 0.00 34.76 4.85
2450 2590 2.512515 GCTGTCAGGCGATCCCAC 60.513 66.667 1.14 0.00 35.39 4.61
2451 2591 2.981302 CTGTCAGGCGATCCCACA 59.019 61.111 3.45 0.00 35.39 4.17
2452 2592 1.153489 CTGTCAGGCGATCCCACAG 60.153 63.158 3.45 5.15 37.41 3.66
2453 2593 2.512515 GTCAGGCGATCCCACAGC 60.513 66.667 3.45 0.00 35.39 4.40
2454 2594 2.685017 TCAGGCGATCCCACAGCT 60.685 61.111 3.45 0.00 35.39 4.24
2455 2595 2.202987 CAGGCGATCCCACAGCTC 60.203 66.667 3.45 0.00 35.39 4.09
2456 2596 3.474570 AGGCGATCCCACAGCTCC 61.475 66.667 3.45 0.00 35.39 4.70
2457 2597 4.554036 GGCGATCCCACAGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
2458 2598 4.899239 GCGATCCCACAGCTCCCG 62.899 72.222 0.00 0.00 0.00 5.14
2459 2599 4.227134 CGATCCCACAGCTCCCGG 62.227 72.222 0.00 0.00 0.00 5.73
2460 2600 4.554036 GATCCCACAGCTCCCGGC 62.554 72.222 0.00 0.00 42.19 6.13
2476 2616 4.735132 GCGGCTGCACGGTCAGTA 62.735 66.667 14.08 0.00 42.15 2.74
2477 2617 2.507102 CGGCTGCACGGTCAGTAG 60.507 66.667 0.50 0.00 36.49 2.57
2478 2618 2.815647 GGCTGCACGGTCAGTAGC 60.816 66.667 0.50 0.84 42.90 3.58
2496 2636 2.321213 CGTAGCCAGCCCAATAAGC 58.679 57.895 0.00 0.00 0.00 3.09
2497 2637 1.166531 CGTAGCCAGCCCAATAAGCC 61.167 60.000 0.00 0.00 0.00 4.35
2498 2638 0.106719 GTAGCCAGCCCAATAAGCCA 60.107 55.000 0.00 0.00 0.00 4.75
2499 2639 0.183492 TAGCCAGCCCAATAAGCCAG 59.817 55.000 0.00 0.00 0.00 4.85
2500 2640 2.129785 GCCAGCCCAATAAGCCAGG 61.130 63.158 0.00 0.00 0.00 4.45
2501 2641 1.456331 CCAGCCCAATAAGCCAGGG 60.456 63.158 0.00 0.00 45.68 4.45
2502 2642 1.307647 CAGCCCAATAAGCCAGGGT 59.692 57.895 0.00 0.00 44.69 4.34
2503 2643 1.039233 CAGCCCAATAAGCCAGGGTG 61.039 60.000 0.00 0.00 44.69 4.61
2504 2644 1.758122 GCCCAATAAGCCAGGGTGG 60.758 63.158 0.00 0.00 44.69 4.61
2505 2645 1.697297 CCCAATAAGCCAGGGTGGT 59.303 57.895 0.00 0.00 40.46 4.16
2506 2646 0.395724 CCCAATAAGCCAGGGTGGTC 60.396 60.000 0.00 0.00 40.46 4.02
2507 2647 0.395724 CCAATAAGCCAGGGTGGTCC 60.396 60.000 0.00 0.00 40.46 4.46
2508 2648 0.331278 CAATAAGCCAGGGTGGTCCA 59.669 55.000 0.00 0.00 40.46 4.02
2509 2649 1.063717 CAATAAGCCAGGGTGGTCCAT 60.064 52.381 0.00 0.00 40.46 3.41
2510 2650 1.308877 ATAAGCCAGGGTGGTCCATT 58.691 50.000 0.00 0.00 40.46 3.16
2511 2651 1.974028 TAAGCCAGGGTGGTCCATTA 58.026 50.000 0.00 0.00 40.46 1.90
2512 2652 1.080638 AAGCCAGGGTGGTCCATTAA 58.919 50.000 0.00 0.00 40.46 1.40
2513 2653 1.308877 AGCCAGGGTGGTCCATTAAT 58.691 50.000 0.00 0.00 40.46 1.40
2514 2654 2.498441 AGCCAGGGTGGTCCATTAATA 58.502 47.619 0.00 0.00 40.46 0.98
2515 2655 2.443255 AGCCAGGGTGGTCCATTAATAG 59.557 50.000 0.00 0.00 40.46 1.73
2516 2656 2.441750 GCCAGGGTGGTCCATTAATAGA 59.558 50.000 0.00 0.00 40.46 1.98
2517 2657 3.117663 GCCAGGGTGGTCCATTAATAGAA 60.118 47.826 0.00 0.00 40.46 2.10
2518 2658 4.630184 GCCAGGGTGGTCCATTAATAGAAA 60.630 45.833 0.00 0.00 40.46 2.52
2519 2659 5.705400 CCAGGGTGGTCCATTAATAGAAAT 58.295 41.667 0.00 0.00 38.24 2.17
2520 2660 6.693045 GCCAGGGTGGTCCATTAATAGAAATA 60.693 42.308 0.00 0.00 40.46 1.40
2521 2661 7.470192 CCAGGGTGGTCCATTAATAGAAATAT 58.530 38.462 0.00 0.00 38.24 1.28
2522 2662 7.950124 CCAGGGTGGTCCATTAATAGAAATATT 59.050 37.037 0.00 0.00 38.24 1.28
2523 2663 9.367160 CAGGGTGGTCCATTAATAGAAATATTT 57.633 33.333 0.00 0.00 38.24 1.40
2524 2664 9.951866 AGGGTGGTCCATTAATAGAAATATTTT 57.048 29.630 1.43 0.00 38.24 1.82
2584 2724 7.719871 ACTACACTATATACAAGCTATGGGG 57.280 40.000 0.00 0.00 0.00 4.96
2585 2725 7.476153 ACTACACTATATACAAGCTATGGGGA 58.524 38.462 0.00 0.00 0.00 4.81
2586 2726 7.954056 ACTACACTATATACAAGCTATGGGGAA 59.046 37.037 0.00 0.00 0.00 3.97
2587 2727 7.626999 ACACTATATACAAGCTATGGGGAAA 57.373 36.000 0.00 0.00 0.00 3.13
2588 2728 8.219660 ACACTATATACAAGCTATGGGGAAAT 57.780 34.615 0.00 0.00 0.00 2.17
2589 2729 8.669571 ACACTATATACAAGCTATGGGGAAATT 58.330 33.333 0.00 0.00 0.00 1.82
2590 2730 9.167311 CACTATATACAAGCTATGGGGAAATTC 57.833 37.037 0.00 0.00 0.00 2.17
2591 2731 8.329502 ACTATATACAAGCTATGGGGAAATTCC 58.670 37.037 2.79 2.79 35.23 3.01
2592 2732 3.756082 ACAAGCTATGGGGAAATTCCA 57.244 42.857 14.68 0.00 38.64 3.53
2593 2733 3.635591 ACAAGCTATGGGGAAATTCCAG 58.364 45.455 14.68 3.58 38.64 3.86
2594 2734 2.961062 CAAGCTATGGGGAAATTCCAGG 59.039 50.000 14.68 0.12 38.64 4.45
2595 2735 1.500736 AGCTATGGGGAAATTCCAGGG 59.499 52.381 14.68 0.46 38.64 4.45
2596 2736 1.217942 GCTATGGGGAAATTCCAGGGT 59.782 52.381 14.68 0.00 38.64 4.34
2597 2737 2.949447 CTATGGGGAAATTCCAGGGTG 58.051 52.381 14.68 0.00 38.64 4.61
2598 2738 0.339510 ATGGGGAAATTCCAGGGTGG 59.660 55.000 14.68 0.00 38.64 4.61
2599 2739 1.077298 TGGGGAAATTCCAGGGTGGT 61.077 55.000 14.68 0.00 38.64 4.16
2600 2740 0.324368 GGGGAAATTCCAGGGTGGTC 60.324 60.000 14.68 0.00 38.64 4.02
2601 2741 0.324368 GGGAAATTCCAGGGTGGTCC 60.324 60.000 14.68 0.00 38.64 4.46
2602 2742 0.407918 GGAAATTCCAGGGTGGTCCA 59.592 55.000 7.23 0.00 39.03 4.02
2603 2743 1.007118 GGAAATTCCAGGGTGGTCCAT 59.993 52.381 7.23 0.00 39.03 3.41
2604 2744 2.102578 GAAATTCCAGGGTGGTCCATG 58.897 52.381 0.00 0.00 44.12 3.66
2616 2756 3.338250 TCCATGGACCACCCTGGC 61.338 66.667 11.44 0.00 46.80 4.85
2617 2757 4.447342 CCATGGACCACCCTGGCC 62.447 72.222 5.56 0.00 43.04 5.36
2618 2758 3.660571 CATGGACCACCCTGGCCA 61.661 66.667 4.71 4.71 43.97 5.36
2619 2759 3.661648 ATGGACCACCCTGGCCAC 61.662 66.667 0.00 0.00 43.14 5.01
2626 2766 4.760220 ACCCTGGCCACCCCCTAG 62.760 72.222 0.00 0.00 0.00 3.02
2629 2769 2.040884 CTGGCCACCCCCTAGCTA 60.041 66.667 0.00 0.00 0.00 3.32
2630 2770 2.366435 TGGCCACCCCCTAGCTAC 60.366 66.667 0.00 0.00 0.00 3.58
2631 2771 3.547513 GGCCACCCCCTAGCTACG 61.548 72.222 0.00 0.00 0.00 3.51
2632 2772 4.237207 GCCACCCCCTAGCTACGC 62.237 72.222 0.00 0.00 0.00 4.42
2633 2773 3.547513 CCACCCCCTAGCTACGCC 61.548 72.222 0.00 0.00 0.00 5.68
2634 2774 2.762459 CACCCCCTAGCTACGCCA 60.762 66.667 0.00 0.00 0.00 5.69
2635 2775 2.762875 ACCCCCTAGCTACGCCAC 60.763 66.667 0.00 0.00 0.00 5.01
2636 2776 2.444140 CCCCCTAGCTACGCCACT 60.444 66.667 0.00 0.00 0.00 4.00
2637 2777 2.797278 CCCCCTAGCTACGCCACTG 61.797 68.421 0.00 0.00 0.00 3.66
2638 2778 2.058595 CCCCTAGCTACGCCACTGT 61.059 63.158 0.00 0.00 0.00 3.55
2639 2779 1.141881 CCCTAGCTACGCCACTGTG 59.858 63.158 0.00 0.00 0.00 3.66
2640 2780 1.519455 CCTAGCTACGCCACTGTGC 60.519 63.158 1.29 0.00 0.00 4.57
2641 2781 1.215382 CTAGCTACGCCACTGTGCA 59.785 57.895 1.29 0.00 0.00 4.57
2642 2782 1.078759 CTAGCTACGCCACTGTGCAC 61.079 60.000 10.75 10.75 0.00 4.57
2643 2783 2.812542 TAGCTACGCCACTGTGCACG 62.813 60.000 13.13 16.53 0.00 5.34
2644 2784 3.112075 CTACGCCACTGTGCACGG 61.112 66.667 24.22 24.22 0.00 4.94
2645 2785 3.858868 CTACGCCACTGTGCACGGT 62.859 63.158 25.75 25.75 35.46 4.83
2650 2790 2.972505 CACTGTGCACGGTGGTCC 60.973 66.667 39.72 5.32 46.65 4.46
2651 2791 3.161450 ACTGTGCACGGTGGTCCT 61.161 61.111 30.12 4.28 33.47 3.85
2652 2792 2.666190 CTGTGCACGGTGGTCCTG 60.666 66.667 17.96 0.00 0.00 3.86
2653 2793 4.248842 TGTGCACGGTGGTCCTGG 62.249 66.667 13.13 0.00 0.00 4.45
2670 2810 4.275524 GCCGAGCCATATGAGAGC 57.724 61.111 3.65 0.00 0.00 4.09
2671 2811 1.368950 GCCGAGCCATATGAGAGCA 59.631 57.895 3.65 0.00 0.00 4.26
2672 2812 0.948141 GCCGAGCCATATGAGAGCAC 60.948 60.000 3.65 0.00 0.00 4.40
2673 2813 0.320247 CCGAGCCATATGAGAGCACC 60.320 60.000 3.65 0.00 0.00 5.01
2674 2814 0.665670 CGAGCCATATGAGAGCACCG 60.666 60.000 3.65 3.95 0.00 4.94
2675 2815 0.390860 GAGCCATATGAGAGCACCGT 59.609 55.000 3.65 0.00 0.00 4.83
2676 2816 0.390860 AGCCATATGAGAGCACCGTC 59.609 55.000 3.65 0.00 0.00 4.79
2677 2817 0.601311 GCCATATGAGAGCACCGTCC 60.601 60.000 3.65 0.00 0.00 4.79
2678 2818 1.043816 CCATATGAGAGCACCGTCCT 58.956 55.000 3.65 0.00 0.00 3.85
2679 2819 1.000283 CCATATGAGAGCACCGTCCTC 60.000 57.143 3.65 0.00 0.00 3.71
2680 2820 1.959985 CATATGAGAGCACCGTCCTCT 59.040 52.381 0.00 0.00 42.12 3.69
2681 2821 1.393603 TATGAGAGCACCGTCCTCTG 58.606 55.000 0.00 0.00 39.66 3.35
2682 2822 1.326213 ATGAGAGCACCGTCCTCTGG 61.326 60.000 0.00 0.00 39.66 3.86
2683 2823 1.979693 GAGAGCACCGTCCTCTGGT 60.980 63.158 0.00 0.00 39.66 4.00
2684 2824 0.680280 GAGAGCACCGTCCTCTGGTA 60.680 60.000 0.00 0.00 39.66 3.25
2685 2825 0.966370 AGAGCACCGTCCTCTGGTAC 60.966 60.000 0.00 0.00 38.21 3.34
2686 2826 0.966370 GAGCACCGTCCTCTGGTACT 60.966 60.000 0.00 0.00 37.72 2.73
2687 2827 1.215647 GCACCGTCCTCTGGTACTG 59.784 63.158 0.00 0.00 37.72 2.74
2688 2828 1.215647 CACCGTCCTCTGGTACTGC 59.784 63.158 0.00 0.00 37.72 4.40
2689 2829 1.982938 ACCGTCCTCTGGTACTGCC 60.983 63.158 0.00 0.00 38.15 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 87 9.787532 TTTGAACAATGCAAATAAGCTATCTAC 57.212 29.630 0.00 0.00 34.99 2.59
277 281 3.973206 AAGATGACATCGGTGTTGGTA 57.027 42.857 1.13 0.00 39.09 3.25
428 432 2.039418 CCATCGGGACCTAAGTGATCA 58.961 52.381 0.00 0.00 35.59 2.92
533 537 9.331282 GTAAGATGAAATGGCACTTACTCTATT 57.669 33.333 13.26 0.00 39.45 1.73
561 565 2.757868 ACAAAGCAAGTTAGCACCAACA 59.242 40.909 0.00 0.00 36.85 3.33
562 566 3.436700 ACAAAGCAAGTTAGCACCAAC 57.563 42.857 0.00 0.00 36.85 3.77
563 567 4.464069 AAACAAAGCAAGTTAGCACCAA 57.536 36.364 0.00 0.00 36.85 3.67
564 568 4.180057 CAAAACAAAGCAAGTTAGCACCA 58.820 39.130 0.00 0.00 36.85 4.17
565 569 3.001228 GCAAAACAAAGCAAGTTAGCACC 59.999 43.478 0.00 0.00 36.85 5.01
566 570 3.865164 AGCAAAACAAAGCAAGTTAGCAC 59.135 39.130 12.31 0.00 34.53 4.40
567 571 4.122143 AGCAAAACAAAGCAAGTTAGCA 57.878 36.364 12.31 0.00 34.53 3.49
568 572 4.329801 ACAAGCAAAACAAAGCAAGTTAGC 59.670 37.500 0.00 0.00 33.18 3.09
569 573 6.128580 ACAACAAGCAAAACAAAGCAAGTTAG 60.129 34.615 0.00 0.00 31.79 2.34
570 574 5.698545 ACAACAAGCAAAACAAAGCAAGTTA 59.301 32.000 0.00 0.00 31.79 2.24
571 575 4.514816 ACAACAAGCAAAACAAAGCAAGTT 59.485 33.333 0.00 0.00 32.70 2.66
572 576 4.064388 ACAACAAGCAAAACAAAGCAAGT 58.936 34.783 0.00 0.00 0.00 3.16
573 577 4.666928 ACAACAAGCAAAACAAAGCAAG 57.333 36.364 0.00 0.00 0.00 4.01
574 578 4.320057 CCAACAACAAGCAAAACAAAGCAA 60.320 37.500 0.00 0.00 0.00 3.91
575 579 3.188048 CCAACAACAAGCAAAACAAAGCA 59.812 39.130 0.00 0.00 0.00 3.91
576 580 3.188254 ACCAACAACAAGCAAAACAAAGC 59.812 39.130 0.00 0.00 0.00 3.51
577 581 4.710680 CACCAACAACAAGCAAAACAAAG 58.289 39.130 0.00 0.00 0.00 2.77
578 582 3.058639 GCACCAACAACAAGCAAAACAAA 60.059 39.130 0.00 0.00 0.00 2.83
579 583 2.481952 GCACCAACAACAAGCAAAACAA 59.518 40.909 0.00 0.00 0.00 2.83
580 584 2.072298 GCACCAACAACAAGCAAAACA 58.928 42.857 0.00 0.00 0.00 2.83
581 585 2.345876 AGCACCAACAACAAGCAAAAC 58.654 42.857 0.00 0.00 0.00 2.43
582 586 2.758736 AGCACCAACAACAAGCAAAA 57.241 40.000 0.00 0.00 0.00 2.44
583 587 3.194542 AGTTAGCACCAACAACAAGCAAA 59.805 39.130 0.00 0.00 0.00 3.68
584 588 2.757868 AGTTAGCACCAACAACAAGCAA 59.242 40.909 0.00 0.00 0.00 3.91
585 589 2.374184 AGTTAGCACCAACAACAAGCA 58.626 42.857 0.00 0.00 0.00 3.91
586 590 3.115554 CAAGTTAGCACCAACAACAAGC 58.884 45.455 0.00 0.00 0.00 4.01
587 591 3.115554 GCAAGTTAGCACCAACAACAAG 58.884 45.455 0.00 0.00 0.00 3.16
588 592 2.757868 AGCAAGTTAGCACCAACAACAA 59.242 40.909 0.00 0.00 36.85 2.83
589 593 2.374184 AGCAAGTTAGCACCAACAACA 58.626 42.857 0.00 0.00 36.85 3.33
590 594 3.436700 AAGCAAGTTAGCACCAACAAC 57.563 42.857 0.00 0.00 36.85 3.32
591 595 3.194542 ACAAAGCAAGTTAGCACCAACAA 59.805 39.130 0.00 0.00 36.85 2.83
847 886 7.231519 ACTTGATGCATCATTCTCATCATCATT 59.768 33.333 29.13 2.17 43.94 2.57
907 949 5.122396 GTCACTTTGGCTTCGAGTATGAAAT 59.878 40.000 0.00 0.00 0.00 2.17
1203 1246 7.106239 CCTCATTGAGGTTAGTTGTGTCTAAT 58.894 38.462 22.45 0.00 44.25 1.73
1206 1249 4.899502 CCTCATTGAGGTTAGTTGTGTCT 58.100 43.478 22.45 0.00 44.25 3.41
1373 1465 1.005867 GCACCTAAACCGTCCACGA 60.006 57.895 0.00 0.00 43.02 4.35
1379 1471 0.402504 TCCCATTGCACCTAAACCGT 59.597 50.000 0.00 0.00 0.00 4.83
1495 1590 2.741878 CGAAAGACATTCCGCCTATGGT 60.742 50.000 0.00 0.00 34.34 3.55
1500 1595 1.066143 ACATCGAAAGACATTCCGCCT 60.066 47.619 0.00 0.00 46.97 5.52
1601 1702 3.051496 TGAATCTTCCTCCCTCTCCTCAT 60.051 47.826 0.00 0.00 0.00 2.90
1602 1703 2.316067 TGAATCTTCCTCCCTCTCCTCA 59.684 50.000 0.00 0.00 0.00 3.86
1603 1704 3.039252 TGAATCTTCCTCCCTCTCCTC 57.961 52.381 0.00 0.00 0.00 3.71
1604 1705 3.209612 AGATGAATCTTCCTCCCTCTCCT 59.790 47.826 0.00 0.00 31.97 3.69
1605 1706 3.586429 AGATGAATCTTCCTCCCTCTCC 58.414 50.000 0.00 0.00 31.97 3.71
1710 1823 6.515043 AGTTCAAAATGCAAATCAAGTTCG 57.485 33.333 0.00 0.00 0.00 3.95
1752 1865 3.119495 GCCCACGAGTTTAAAATCATGCT 60.119 43.478 15.28 0.00 0.00 3.79
1788 1906 9.488124 CACAATAAAAATTTCACACAAACAAGG 57.512 29.630 0.00 0.00 0.00 3.61
1952 2092 1.448893 TATCGTCTGGTTTGGCGCC 60.449 57.895 22.73 22.73 0.00 6.53
2035 2175 0.452987 TCGGGTTCAATACGGAGTCG 59.547 55.000 0.00 0.00 43.93 4.18
2036 2176 2.094338 AGTTCGGGTTCAATACGGAGTC 60.094 50.000 0.00 0.00 43.93 3.36
2038 2178 2.094390 TGAGTTCGGGTTCAATACGGAG 60.094 50.000 0.00 0.00 0.00 4.63
2039 2179 1.894466 TGAGTTCGGGTTCAATACGGA 59.106 47.619 0.00 0.00 0.00 4.69
2040 2180 2.373540 TGAGTTCGGGTTCAATACGG 57.626 50.000 0.00 0.00 0.00 4.02
2041 2181 2.534349 CGATGAGTTCGGGTTCAATACG 59.466 50.000 0.00 0.00 44.28 3.06
2065 2205 4.424430 CGTTGTACTGCGCGTGGC 62.424 66.667 8.43 8.01 43.96 5.01
2066 2206 4.424430 GCGTTGTACTGCGCGTGG 62.424 66.667 8.43 3.12 44.13 4.94
2074 2214 4.752879 ATGCGGCGGCGTTGTACT 62.753 61.111 32.35 8.33 44.10 2.73
2075 2215 4.218478 GATGCGGCGGCGTTGTAC 62.218 66.667 32.35 15.87 44.10 2.90
2097 2237 1.905637 ATCTTGGTTTTCCGGTGACC 58.094 50.000 14.13 14.13 44.36 4.02
2098 2238 3.119955 GCTTATCTTGGTTTTCCGGTGAC 60.120 47.826 0.00 0.00 44.36 3.67
2099 2239 3.078837 GCTTATCTTGGTTTTCCGGTGA 58.921 45.455 0.00 0.00 44.36 4.02
2100 2240 3.081804 AGCTTATCTTGGTTTTCCGGTG 58.918 45.455 0.00 0.00 44.36 4.94
2101 2241 3.081804 CAGCTTATCTTGGTTTTCCGGT 58.918 45.455 0.00 0.00 44.36 5.28
2102 2242 3.081804 ACAGCTTATCTTGGTTTTCCGG 58.918 45.455 0.00 0.00 44.36 5.14
2103 2243 3.751175 TGACAGCTTATCTTGGTTTTCCG 59.249 43.478 0.00 0.00 44.36 4.30
2104 2244 4.518970 TGTGACAGCTTATCTTGGTTTTCC 59.481 41.667 0.00 0.00 41.14 3.13
2105 2245 5.689383 TGTGACAGCTTATCTTGGTTTTC 57.311 39.130 0.00 0.00 0.00 2.29
2106 2246 5.695851 CTGTGACAGCTTATCTTGGTTTT 57.304 39.130 0.00 0.00 0.00 2.43
2120 2260 1.959848 TCACGAGGAGCTGTGACAG 59.040 57.895 8.52 8.52 40.02 3.51
2121 2261 4.174305 TCACGAGGAGCTGTGACA 57.826 55.556 0.00 0.00 40.02 3.58
2123 2263 2.954611 CGTCACGAGGAGCTGTGA 59.045 61.111 0.00 0.00 42.49 3.58
2124 2264 2.807045 GCGTCACGAGGAGCTGTG 60.807 66.667 0.00 0.00 37.44 3.66
2137 2277 3.802008 TATTCCTCTCGCGCGCGTC 62.802 63.158 46.54 21.85 40.74 5.19
2138 2278 3.195591 ATATTCCTCTCGCGCGCGT 62.196 57.895 46.54 30.93 40.74 6.01
2139 2279 2.429236 ATATTCCTCTCGCGCGCG 60.429 61.111 44.84 44.84 41.35 6.86
2140 2280 1.068287 GAGATATTCCTCTCGCGCGC 61.068 60.000 27.95 23.91 32.90 6.86
2141 2281 0.238553 TGAGATATTCCTCTCGCGCG 59.761 55.000 26.76 26.76 43.84 6.86
2142 2282 1.268352 ACTGAGATATTCCTCTCGCGC 59.732 52.381 0.00 0.00 43.84 6.86
2143 2283 2.412195 CGACTGAGATATTCCTCTCGCG 60.412 54.545 0.00 0.00 43.84 5.87
2144 2284 2.550606 ACGACTGAGATATTCCTCTCGC 59.449 50.000 0.00 0.00 43.84 5.03
2145 2285 3.810386 TGACGACTGAGATATTCCTCTCG 59.190 47.826 0.00 0.00 43.84 4.04
2146 2286 5.335583 CCATGACGACTGAGATATTCCTCTC 60.336 48.000 0.00 0.00 41.73 3.20
2147 2287 4.522405 CCATGACGACTGAGATATTCCTCT 59.478 45.833 0.00 0.00 34.38 3.69
2148 2288 4.804108 CCATGACGACTGAGATATTCCTC 58.196 47.826 0.00 0.00 0.00 3.71
2149 2289 3.006323 GCCATGACGACTGAGATATTCCT 59.994 47.826 0.00 0.00 0.00 3.36
2150 2290 3.321497 GCCATGACGACTGAGATATTCC 58.679 50.000 0.00 0.00 0.00 3.01
2151 2291 2.983136 CGCCATGACGACTGAGATATTC 59.017 50.000 0.00 0.00 34.06 1.75
2152 2292 2.623416 TCGCCATGACGACTGAGATATT 59.377 45.455 0.00 0.00 37.09 1.28
2153 2293 2.230660 TCGCCATGACGACTGAGATAT 58.769 47.619 0.00 0.00 37.09 1.63
2154 2294 1.675552 TCGCCATGACGACTGAGATA 58.324 50.000 0.00 0.00 37.09 1.98
2155 2295 1.035923 ATCGCCATGACGACTGAGAT 58.964 50.000 6.17 0.00 46.28 2.75
2156 2296 0.101219 CATCGCCATGACGACTGAGA 59.899 55.000 6.17 0.00 46.28 3.27
2157 2297 0.179127 ACATCGCCATGACGACTGAG 60.179 55.000 6.17 0.00 46.28 3.35
2158 2298 0.179137 GACATCGCCATGACGACTGA 60.179 55.000 6.17 0.00 46.28 3.41
2159 2299 1.474648 CGACATCGCCATGACGACTG 61.475 60.000 6.17 9.01 46.91 3.51
2160 2300 1.226688 CGACATCGCCATGACGACT 60.227 57.895 6.17 0.00 46.91 4.18
2161 2301 3.299585 CGACATCGCCATGACGAC 58.700 61.111 6.17 0.00 46.91 4.34
2192 2332 1.737735 TCGCCGTACTCGAAGACGA 60.738 57.895 17.69 4.76 46.56 4.20
2193 2333 1.579626 GTCGCCGTACTCGAAGACG 60.580 63.158 10.90 10.90 37.73 4.18
2194 2334 1.579626 CGTCGCCGTACTCGAAGAC 60.580 63.158 12.35 4.77 37.57 3.01
2195 2335 1.690283 CTCGTCGCCGTACTCGAAGA 61.690 60.000 16.87 16.87 40.85 2.87
2196 2336 1.296722 CTCGTCGCCGTACTCGAAG 60.297 63.158 8.35 10.22 37.73 3.79
2197 2337 2.780643 CTCGTCGCCGTACTCGAA 59.219 61.111 8.35 0.00 37.73 3.71
2198 2338 3.857854 GCTCGTCGCCGTACTCGA 61.858 66.667 3.45 3.45 39.71 4.04
2200 2340 4.883300 CCGCTCGTCGCCGTACTC 62.883 72.222 0.00 0.00 36.73 2.59
2214 2354 4.752879 TACAGCTTCGTGCCCCGC 62.753 66.667 0.00 0.00 44.23 6.13
2215 2355 2.813908 GTACAGCTTCGTGCCCCG 60.814 66.667 0.00 0.00 44.23 5.73
2216 2356 2.813908 CGTACAGCTTCGTGCCCC 60.814 66.667 0.00 0.00 44.23 5.80
2217 2357 3.488090 GCGTACAGCTTCGTGCCC 61.488 66.667 0.00 0.00 44.23 5.36
2250 2390 4.203076 ATCTCGCACGGCCGGTAC 62.203 66.667 31.76 17.13 0.00 3.34
2251 2391 3.896133 GATCTCGCACGGCCGGTA 61.896 66.667 31.76 10.51 0.00 4.02
2263 2403 3.151958 TTAGCAGCGGGCCGATCTC 62.152 63.158 33.44 17.79 46.50 2.75
2264 2404 3.154473 TTAGCAGCGGGCCGATCT 61.154 61.111 33.44 23.76 46.50 2.75
2265 2405 2.967615 GTTAGCAGCGGGCCGATC 60.968 66.667 33.44 17.70 46.50 3.69
2266 2406 4.547367 GGTTAGCAGCGGGCCGAT 62.547 66.667 33.44 24.23 46.50 4.18
2269 2409 3.134127 CTTGGTTAGCAGCGGGCC 61.134 66.667 0.00 0.00 46.50 5.80
2277 2417 1.305930 CCCAGTTCCGCTTGGTTAGC 61.306 60.000 0.00 0.00 46.83 3.09
2278 2418 0.036306 ACCCAGTTCCGCTTGGTTAG 59.964 55.000 0.00 0.00 39.97 2.34
2279 2419 0.035739 GACCCAGTTCCGCTTGGTTA 59.964 55.000 0.00 0.00 42.63 2.85
2280 2420 1.228154 GACCCAGTTCCGCTTGGTT 60.228 57.895 0.00 0.00 42.63 3.67
2281 2421 2.430367 GACCCAGTTCCGCTTGGT 59.570 61.111 0.00 0.00 44.95 3.67
2282 2422 1.966451 GTGACCCAGTTCCGCTTGG 60.966 63.158 0.00 0.00 36.18 3.61
2283 2423 2.317609 CGTGACCCAGTTCCGCTTG 61.318 63.158 0.00 0.00 0.00 4.01
2284 2424 2.030562 CGTGACCCAGTTCCGCTT 59.969 61.111 0.00 0.00 0.00 4.68
2285 2425 4.003788 CCGTGACCCAGTTCCGCT 62.004 66.667 0.00 0.00 0.00 5.52
2289 2429 4.980805 TGCGCCGTGACCCAGTTC 62.981 66.667 4.18 0.00 0.00 3.01
2290 2430 4.988598 CTGCGCCGTGACCCAGTT 62.989 66.667 4.18 0.00 0.00 3.16
2322 2462 3.391382 GAGGTGTCCGGGTCCCAG 61.391 72.222 9.12 0.00 0.00 4.45
2331 2471 3.607370 GAAGGTGGCGGAGGTGTCC 62.607 68.421 0.00 0.00 39.88 4.02
2332 2472 2.047179 GAAGGTGGCGGAGGTGTC 60.047 66.667 0.00 0.00 0.00 3.67
2333 2473 2.741878 TAGGAAGGTGGCGGAGGTGT 62.742 60.000 0.00 0.00 0.00 4.16
2334 2474 1.338136 ATAGGAAGGTGGCGGAGGTG 61.338 60.000 0.00 0.00 0.00 4.00
2335 2475 1.003051 ATAGGAAGGTGGCGGAGGT 59.997 57.895 0.00 0.00 0.00 3.85
2336 2476 1.447643 CATAGGAAGGTGGCGGAGG 59.552 63.158 0.00 0.00 0.00 4.30
2337 2477 1.447643 CCATAGGAAGGTGGCGGAG 59.552 63.158 0.00 0.00 0.00 4.63
2338 2478 2.070039 CCCATAGGAAGGTGGCGGA 61.070 63.158 0.00 0.00 34.08 5.54
2339 2479 2.070039 TCCCATAGGAAGGTGGCGG 61.070 63.158 0.00 0.00 40.08 6.13
2340 2480 1.146263 GTCCCATAGGAAGGTGGCG 59.854 63.158 0.00 0.00 46.38 5.69
2341 2481 1.532238 GGTCCCATAGGAAGGTGGC 59.468 63.158 0.00 0.00 46.38 5.01
2342 2482 1.696097 CGGGTCCCATAGGAAGGTGG 61.696 65.000 9.12 0.00 46.38 4.61
2343 2483 1.830145 CGGGTCCCATAGGAAGGTG 59.170 63.158 9.12 0.00 46.38 4.00
2344 2484 2.070650 GCGGGTCCCATAGGAAGGT 61.071 63.158 9.12 0.00 46.38 3.50
2345 2485 1.418908 ATGCGGGTCCCATAGGAAGG 61.419 60.000 9.12 0.00 46.38 3.46
2346 2486 0.250467 CATGCGGGTCCCATAGGAAG 60.250 60.000 9.12 0.00 46.38 3.46
2347 2487 0.692756 TCATGCGGGTCCCATAGGAA 60.693 55.000 9.12 0.00 46.38 3.36
2348 2488 0.473694 ATCATGCGGGTCCCATAGGA 60.474 55.000 9.12 3.35 41.08 2.94
2349 2489 0.036010 GATCATGCGGGTCCCATAGG 60.036 60.000 9.12 0.00 0.00 2.57
2350 2490 0.036010 GGATCATGCGGGTCCCATAG 60.036 60.000 9.12 0.00 0.00 2.23
2351 2491 0.766288 TGGATCATGCGGGTCCCATA 60.766 55.000 9.12 0.00 0.00 2.74
2352 2492 2.060567 CTGGATCATGCGGGTCCCAT 62.061 60.000 9.12 0.00 0.00 4.00
2353 2493 2.690510 TGGATCATGCGGGTCCCA 60.691 61.111 9.12 0.00 0.00 4.37
2354 2494 2.111878 CTGGATCATGCGGGTCCC 59.888 66.667 0.00 0.00 0.00 4.46
2355 2495 1.070445 CTCTGGATCATGCGGGTCC 59.930 63.158 0.63 0.63 0.00 4.46
2356 2496 1.596477 GCTCTGGATCATGCGGGTC 60.596 63.158 0.00 0.00 0.00 4.46
2357 2497 2.369633 TGCTCTGGATCATGCGGGT 61.370 57.895 0.00 0.00 0.00 5.28
2358 2498 1.890979 GTGCTCTGGATCATGCGGG 60.891 63.158 0.00 0.00 0.00 6.13
2359 2499 2.242572 CGTGCTCTGGATCATGCGG 61.243 63.158 0.00 0.00 0.00 5.69
2360 2500 2.242572 CCGTGCTCTGGATCATGCG 61.243 63.158 0.00 0.00 0.00 4.73
2361 2501 2.541120 GCCGTGCTCTGGATCATGC 61.541 63.158 0.00 0.00 0.00 4.06
2362 2502 1.890979 GGCCGTGCTCTGGATCATG 60.891 63.158 0.00 0.00 0.00 3.07
2363 2503 2.507944 GGCCGTGCTCTGGATCAT 59.492 61.111 0.00 0.00 0.00 2.45
2364 2504 4.147449 CGGCCGTGCTCTGGATCA 62.147 66.667 19.50 0.00 0.00 2.92
2365 2505 4.899239 CCGGCCGTGCTCTGGATC 62.899 72.222 26.12 0.00 0.00 3.36
2383 2523 3.723348 GAACGACGGCAGGGCAAC 61.723 66.667 0.00 0.00 0.00 4.17
2393 2533 4.470050 GAGCTTGCGCGAACGACG 62.470 66.667 12.10 0.00 43.93 5.12
2394 2534 3.106407 AGAGCTTGCGCGAACGAC 61.106 61.111 12.10 0.00 43.93 4.34
2395 2535 3.105782 CAGAGCTTGCGCGAACGA 61.106 61.111 12.10 0.00 43.93 3.85
2396 2536 4.783841 GCAGAGCTTGCGCGAACG 62.784 66.667 12.10 0.00 44.09 3.95
2414 2554 4.641645 TGCAGTTGGAGCCCACCG 62.642 66.667 0.00 0.00 30.78 4.94
2415 2555 2.985847 GTGCAGTTGGAGCCCACC 60.986 66.667 0.00 0.00 30.78 4.61
2416 2556 3.357079 CGTGCAGTTGGAGCCCAC 61.357 66.667 0.00 0.00 30.78 4.61
2419 2559 3.730761 CAGCGTGCAGTTGGAGCC 61.731 66.667 0.00 0.00 0.00 4.70
2420 2560 2.959357 GACAGCGTGCAGTTGGAGC 61.959 63.158 0.00 0.00 35.19 4.70
2421 2561 1.563435 CTGACAGCGTGCAGTTGGAG 61.563 60.000 0.00 0.00 35.19 3.86
2422 2562 1.595109 CTGACAGCGTGCAGTTGGA 60.595 57.895 0.00 0.00 35.19 3.53
2423 2563 2.610694 CCTGACAGCGTGCAGTTGG 61.611 63.158 0.00 0.00 35.19 3.77
2424 2564 2.941333 CCTGACAGCGTGCAGTTG 59.059 61.111 0.00 0.00 37.08 3.16
2425 2565 2.974698 GCCTGACAGCGTGCAGTT 60.975 61.111 0.00 0.00 0.00 3.16
2433 2573 2.512515 GTGGGATCGCCTGACAGC 60.513 66.667 7.38 0.00 0.00 4.40
2434 2574 1.153489 CTGTGGGATCGCCTGACAG 60.153 63.158 12.39 12.39 37.87 3.51
2435 2575 2.981302 CTGTGGGATCGCCTGACA 59.019 61.111 7.38 4.41 0.00 3.58
2436 2576 2.512515 GCTGTGGGATCGCCTGAC 60.513 66.667 7.38 0.00 0.00 3.51
2437 2577 2.685017 AGCTGTGGGATCGCCTGA 60.685 61.111 7.38 0.00 0.00 3.86
2438 2578 2.202987 GAGCTGTGGGATCGCCTG 60.203 66.667 7.38 4.39 0.00 4.85
2439 2579 3.474570 GGAGCTGTGGGATCGCCT 61.475 66.667 7.38 0.00 0.00 5.52
2440 2580 4.554036 GGGAGCTGTGGGATCGCC 62.554 72.222 7.38 0.12 37.33 5.54
2441 2581 4.899239 CGGGAGCTGTGGGATCGC 62.899 72.222 2.14 2.14 39.44 4.58
2442 2582 4.227134 CCGGGAGCTGTGGGATCG 62.227 72.222 0.00 0.00 0.00 3.69
2443 2583 4.554036 GCCGGGAGCTGTGGGATC 62.554 72.222 2.18 0.00 38.99 3.36
2459 2599 4.735132 TACTGACCGTGCAGCCGC 62.735 66.667 0.00 0.00 39.51 6.53
2460 2600 2.507102 CTACTGACCGTGCAGCCG 60.507 66.667 0.00 0.00 39.51 5.52
2461 2601 2.815647 GCTACTGACCGTGCAGCC 60.816 66.667 0.00 0.00 39.51 4.85
2462 2602 2.537792 TACGCTACTGACCGTGCAGC 62.538 60.000 0.00 0.00 39.51 5.25
2463 2603 0.523546 CTACGCTACTGACCGTGCAG 60.524 60.000 0.00 0.00 41.63 4.41
2464 2604 1.504900 CTACGCTACTGACCGTGCA 59.495 57.895 0.00 0.00 38.28 4.57
2465 2605 1.872679 GCTACGCTACTGACCGTGC 60.873 63.158 0.00 0.00 38.28 5.34
2466 2606 1.226603 GGCTACGCTACTGACCGTG 60.227 63.158 0.00 0.00 38.28 4.94
2467 2607 1.654954 CTGGCTACGCTACTGACCGT 61.655 60.000 0.00 0.00 41.11 4.83
2468 2608 1.064296 CTGGCTACGCTACTGACCG 59.936 63.158 0.00 0.00 0.00 4.79
2469 2609 1.227002 GCTGGCTACGCTACTGACC 60.227 63.158 0.00 0.00 0.00 4.02
2470 2610 1.227002 GGCTGGCTACGCTACTGAC 60.227 63.158 0.00 0.00 0.00 3.51
2471 2611 2.423898 GGGCTGGCTACGCTACTGA 61.424 63.158 0.00 0.00 0.00 3.41
2472 2612 2.107141 GGGCTGGCTACGCTACTG 59.893 66.667 0.00 0.00 0.00 2.74
2473 2613 1.338136 ATTGGGCTGGCTACGCTACT 61.338 55.000 0.00 0.00 0.00 2.57
2474 2614 0.391597 TATTGGGCTGGCTACGCTAC 59.608 55.000 0.00 0.00 0.00 3.58
2475 2615 1.070134 CTTATTGGGCTGGCTACGCTA 59.930 52.381 0.00 0.00 0.00 4.26
2476 2616 0.179045 CTTATTGGGCTGGCTACGCT 60.179 55.000 0.00 0.00 0.00 5.07
2477 2617 1.786049 GCTTATTGGGCTGGCTACGC 61.786 60.000 0.00 0.00 0.00 4.42
2478 2618 1.166531 GGCTTATTGGGCTGGCTACG 61.167 60.000 0.00 0.00 0.00 3.51
2479 2619 0.106719 TGGCTTATTGGGCTGGCTAC 60.107 55.000 0.00 0.00 0.00 3.58
2480 2620 0.183492 CTGGCTTATTGGGCTGGCTA 59.817 55.000 0.00 0.00 0.00 3.93
2481 2621 1.076485 CTGGCTTATTGGGCTGGCT 60.076 57.895 0.00 0.00 0.00 4.75
2482 2622 2.129785 CCTGGCTTATTGGGCTGGC 61.130 63.158 0.00 0.00 41.95 4.85
2483 2623 1.456331 CCCTGGCTTATTGGGCTGG 60.456 63.158 6.91 6.91 45.62 4.85
2484 2624 1.039233 CACCCTGGCTTATTGGGCTG 61.039 60.000 0.00 0.00 44.56 4.85
2485 2625 1.307647 CACCCTGGCTTATTGGGCT 59.692 57.895 0.00 0.00 44.56 5.19
2486 2626 1.758122 CCACCCTGGCTTATTGGGC 60.758 63.158 0.00 0.00 44.56 5.36
2487 2627 0.395724 GACCACCCTGGCTTATTGGG 60.396 60.000 0.00 0.00 42.67 4.12
2488 2628 0.395724 GGACCACCCTGGCTTATTGG 60.396 60.000 0.00 0.00 42.67 3.16
2489 2629 0.331278 TGGACCACCCTGGCTTATTG 59.669 55.000 0.00 0.00 42.67 1.90
2490 2630 1.308877 ATGGACCACCCTGGCTTATT 58.691 50.000 0.00 0.00 42.67 1.40
2491 2631 1.308877 AATGGACCACCCTGGCTTAT 58.691 50.000 0.00 0.00 42.67 1.73
2492 2632 1.974028 TAATGGACCACCCTGGCTTA 58.026 50.000 0.00 0.00 42.67 3.09
2493 2633 1.080638 TTAATGGACCACCCTGGCTT 58.919 50.000 0.00 0.00 42.67 4.35
2494 2634 1.308877 ATTAATGGACCACCCTGGCT 58.691 50.000 0.00 0.00 42.67 4.75
2495 2635 2.441750 TCTATTAATGGACCACCCTGGC 59.558 50.000 0.00 0.00 42.67 4.85
2496 2636 4.788925 TTCTATTAATGGACCACCCTGG 57.211 45.455 0.00 0.00 45.02 4.45
2497 2637 8.940397 AATATTTCTATTAATGGACCACCCTG 57.060 34.615 0.00 0.00 35.38 4.45
2498 2638 9.951866 AAAATATTTCTATTAATGGACCACCCT 57.048 29.630 0.00 0.00 35.38 4.34
2558 2698 9.251440 CCCCATAGCTTGTATATAGTGTAGTAA 57.749 37.037 0.00 0.00 0.00 2.24
2559 2699 8.617491 TCCCCATAGCTTGTATATAGTGTAGTA 58.383 37.037 0.00 0.00 0.00 1.82
2560 2700 7.476153 TCCCCATAGCTTGTATATAGTGTAGT 58.524 38.462 0.00 0.00 0.00 2.73
2561 2701 7.956328 TCCCCATAGCTTGTATATAGTGTAG 57.044 40.000 0.00 0.00 0.00 2.74
2562 2702 8.730093 TTTCCCCATAGCTTGTATATAGTGTA 57.270 34.615 0.00 0.00 0.00 2.90
2563 2703 7.626999 TTTCCCCATAGCTTGTATATAGTGT 57.373 36.000 0.00 0.00 0.00 3.55
2564 2704 9.167311 GAATTTCCCCATAGCTTGTATATAGTG 57.833 37.037 0.00 0.00 0.00 2.74
2565 2705 8.329502 GGAATTTCCCCATAGCTTGTATATAGT 58.670 37.037 3.89 0.00 0.00 2.12
2566 2706 8.328758 TGGAATTTCCCCATAGCTTGTATATAG 58.671 37.037 12.90 0.00 35.03 1.31
2567 2707 8.225863 TGGAATTTCCCCATAGCTTGTATATA 57.774 34.615 12.90 0.00 35.03 0.86
2568 2708 7.102518 TGGAATTTCCCCATAGCTTGTATAT 57.897 36.000 12.90 0.00 35.03 0.86
2569 2709 6.467194 CCTGGAATTTCCCCATAGCTTGTATA 60.467 42.308 12.90 0.00 35.03 1.47
2570 2710 5.388654 CTGGAATTTCCCCATAGCTTGTAT 58.611 41.667 12.90 0.00 35.03 2.29
2571 2711 4.386312 CCTGGAATTTCCCCATAGCTTGTA 60.386 45.833 12.90 0.00 35.03 2.41
2572 2712 3.628257 CCTGGAATTTCCCCATAGCTTGT 60.628 47.826 12.90 0.00 35.03 3.16
2573 2713 2.961062 CCTGGAATTTCCCCATAGCTTG 59.039 50.000 12.90 0.00 35.03 4.01
2574 2714 2.091111 CCCTGGAATTTCCCCATAGCTT 60.091 50.000 12.90 0.00 35.03 3.74
2575 2715 1.500736 CCCTGGAATTTCCCCATAGCT 59.499 52.381 12.90 0.00 35.03 3.32
2576 2716 1.217942 ACCCTGGAATTTCCCCATAGC 59.782 52.381 12.90 0.00 35.03 2.97
2577 2717 2.424812 CCACCCTGGAATTTCCCCATAG 60.425 54.545 12.90 3.52 40.96 2.23
2578 2718 1.573376 CCACCCTGGAATTTCCCCATA 59.427 52.381 12.90 0.00 40.96 2.74
2579 2719 0.339510 CCACCCTGGAATTTCCCCAT 59.660 55.000 12.90 0.00 40.96 4.00
2580 2720 1.077298 ACCACCCTGGAATTTCCCCA 61.077 55.000 12.90 0.00 40.96 4.96
2581 2721 0.324368 GACCACCCTGGAATTTCCCC 60.324 60.000 12.90 0.00 40.96 4.81
2582 2722 0.324368 GGACCACCCTGGAATTTCCC 60.324 60.000 12.90 0.00 40.96 3.97
2583 2723 0.407918 TGGACCACCCTGGAATTTCC 59.592 55.000 8.59 8.59 40.96 3.13
2584 2724 2.102578 CATGGACCACCCTGGAATTTC 58.897 52.381 0.00 0.00 40.96 2.17
2585 2725 2.236489 CATGGACCACCCTGGAATTT 57.764 50.000 0.00 0.00 40.96 1.82
2601 2741 3.660571 TGGCCAGGGTGGTCCATG 61.661 66.667 0.00 0.00 42.76 3.66
2602 2742 3.661648 GTGGCCAGGGTGGTCCAT 61.662 66.667 5.11 0.00 42.76 3.41
2609 2749 4.760220 CTAGGGGGTGGCCAGGGT 62.760 72.222 5.11 0.00 0.00 4.34
2611 2751 3.714078 TAGCTAGGGGGTGGCCAGG 62.714 68.421 5.11 0.00 31.44 4.45
2612 2752 2.040884 TAGCTAGGGGGTGGCCAG 60.041 66.667 5.11 0.00 31.44 4.85
2613 2753 2.366435 GTAGCTAGGGGGTGGCCA 60.366 66.667 0.00 0.00 31.44 5.36
2614 2754 3.547513 CGTAGCTAGGGGGTGGCC 61.548 72.222 5.50 0.00 31.44 5.36
2627 2767 3.112075 CCGTGCACAGTGGCGTAG 61.112 66.667 18.64 0.00 36.28 3.51
2628 2768 3.918977 ACCGTGCACAGTGGCGTA 61.919 61.111 18.64 0.00 36.28 4.42
2633 2773 2.972505 GGACCACCGTGCACAGTG 60.973 66.667 23.57 23.57 0.00 3.66
2634 2774 3.161450 AGGACCACCGTGCACAGT 61.161 61.111 18.64 9.14 41.83 3.55
2635 2775 2.666190 CAGGACCACCGTGCACAG 60.666 66.667 18.64 8.33 41.83 3.66
2636 2776 4.248842 CCAGGACCACCGTGCACA 62.249 66.667 18.64 0.00 41.83 4.57
2653 2793 0.948141 GTGCTCTCATATGGCTCGGC 60.948 60.000 2.13 2.08 0.00 5.54
2654 2794 0.320247 GGTGCTCTCATATGGCTCGG 60.320 60.000 2.13 0.00 0.00 4.63
2655 2795 0.665670 CGGTGCTCTCATATGGCTCG 60.666 60.000 2.13 4.12 0.00 5.03
2656 2796 0.390860 ACGGTGCTCTCATATGGCTC 59.609 55.000 2.13 0.00 0.00 4.70
2657 2797 0.390860 GACGGTGCTCTCATATGGCT 59.609 55.000 2.13 0.00 0.00 4.75
2658 2798 0.601311 GGACGGTGCTCTCATATGGC 60.601 60.000 2.13 0.00 0.00 4.40
2659 2799 1.000283 GAGGACGGTGCTCTCATATGG 60.000 57.143 20.73 0.00 31.63 2.74
2660 2800 1.959985 AGAGGACGGTGCTCTCATATG 59.040 52.381 24.29 0.00 41.57 1.78
2661 2801 1.959985 CAGAGGACGGTGCTCTCATAT 59.040 52.381 26.64 5.90 41.57 1.78
2662 2802 1.393603 CAGAGGACGGTGCTCTCATA 58.606 55.000 26.64 0.00 41.57 2.15
2663 2803 1.326213 CCAGAGGACGGTGCTCTCAT 61.326 60.000 26.64 6.64 41.57 2.90
2664 2804 1.979155 CCAGAGGACGGTGCTCTCA 60.979 63.158 26.64 0.00 41.57 3.27
2665 2805 0.680280 TACCAGAGGACGGTGCTCTC 60.680 60.000 26.64 11.08 41.57 3.20
2666 2806 0.966370 GTACCAGAGGACGGTGCTCT 60.966 60.000 24.29 24.29 46.51 4.09
2667 2807 0.966370 AGTACCAGAGGACGGTGCTC 60.966 60.000 20.49 20.49 45.14 4.26
2668 2808 1.076906 AGTACCAGAGGACGGTGCT 59.923 57.895 0.31 0.31 43.72 4.40
2669 2809 1.215647 CAGTACCAGAGGACGGTGC 59.784 63.158 0.00 0.00 39.24 5.01
2670 2810 1.215647 GCAGTACCAGAGGACGGTG 59.784 63.158 0.00 0.00 37.33 4.94
2671 2811 1.982938 GGCAGTACCAGAGGACGGT 60.983 63.158 0.00 0.00 40.73 4.83
2672 2812 2.893398 GGCAGTACCAGAGGACGG 59.107 66.667 0.00 0.00 38.86 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.