Multiple sequence alignment - TraesCS6A01G353700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G353700 chr6A 100.000 3989 0 0 1 3989 585426107 585430095 0.000000e+00 7367.0
1 TraesCS6A01G353700 chr6A 83.516 273 21 16 1089 1361 17431129 17430881 2.400000e-57 233.0
2 TraesCS6A01G353700 chr6B 93.203 2354 95 24 1651 3989 661338753 661341056 0.000000e+00 3400.0
3 TraesCS6A01G353700 chr6B 89.592 759 45 16 674 1423 661337933 661338666 0.000000e+00 933.0
4 TraesCS6A01G353700 chr6B 91.176 204 18 0 1158 1361 464518008 464518211 1.090000e-70 278.0
5 TraesCS6A01G353700 chr6B 85.425 247 27 2 1018 1264 647769445 647769682 8.560000e-62 248.0
6 TraesCS6A01G353700 chr6D 92.985 2352 106 32 1658 3989 437164255 437166567 0.000000e+00 3374.0
7 TraesCS6A01G353700 chr6D 90.438 753 34 15 678 1414 437163342 437164072 0.000000e+00 957.0
8 TraesCS6A01G353700 chr4B 95.459 1013 45 1 1854 2865 429269109 429270121 0.000000e+00 1615.0
9 TraesCS6A01G353700 chr4B 94.030 134 8 0 1677 1810 429268965 429269098 1.880000e-48 204.0
10 TraesCS6A01G353700 chr3A 93.493 999 59 3 1867 2865 681625860 681626852 0.000000e+00 1480.0
11 TraesCS6A01G353700 chr3A 84.502 271 18 4 1091 1361 189304026 189304272 3.080000e-61 246.0
12 TraesCS6A01G353700 chr3A 93.382 136 9 0 1677 1812 681616874 681617009 6.760000e-48 202.0
13 TraesCS6A01G353700 chr7A 91.429 805 34 14 1677 2480 130189204 130189974 0.000000e+00 1072.0
14 TraesCS6A01G353700 chr7A 94.465 271 15 0 2516 2786 130189973 130190243 6.170000e-113 418.0
15 TraesCS6A01G353700 chr7A 93.151 146 7 1 2635 2780 130190395 130190537 1.120000e-50 211.0
16 TraesCS6A01G353700 chr2A 98.459 519 6 2 1 517 202294172 202293654 0.000000e+00 913.0
17 TraesCS6A01G353700 chr2A 97.255 510 14 0 1 510 98906594 98906085 0.000000e+00 865.0
18 TraesCS6A01G353700 chr5A 94.837 523 17 7 1 523 395888712 395888200 0.000000e+00 808.0
19 TraesCS6A01G353700 chr2B 88.327 514 49 8 1 511 188832238 188832743 1.230000e-169 606.0
20 TraesCS6A01G353700 chr2B 85.965 342 38 5 1 341 672044043 672043711 1.360000e-94 357.0
21 TraesCS6A01G353700 chr2B 95.122 82 3 1 1688 1768 632573621 632573540 1.160000e-25 128.0
22 TraesCS6A01G353700 chr2B 88.889 81 5 1 3 83 33063689 33063765 3.280000e-16 97.1
23 TraesCS6A01G353700 chr1A 87.008 508 54 9 1 506 361056707 361056210 2.690000e-156 562.0
24 TraesCS6A01G353700 chr1A 86.240 516 57 11 1 513 175547023 175546519 7.540000e-152 547.0
25 TraesCS6A01G353700 chr1A 95.122 82 3 1 1688 1768 31697887 31697968 1.160000e-25 128.0
26 TraesCS6A01G353700 chr1A 96.104 77 3 0 1692 1768 300591178 300591102 4.180000e-25 126.0
27 TraesCS6A01G353700 chr3B 84.961 512 51 11 1 510 161139437 161138950 2.770000e-136 496.0
28 TraesCS6A01G353700 chr3B 89.655 87 5 1 1 87 273302964 273303046 1.520000e-19 108.0
29 TraesCS6A01G353700 chr4A 91.696 289 24 0 2574 2862 589150266 589150554 6.210000e-108 401.0
30 TraesCS6A01G353700 chr4A 90.000 50 5 0 619 668 1744666 1744715 9.250000e-07 65.8
31 TraesCS6A01G353700 chr2D 88.150 346 29 4 1018 1361 490507513 490507848 6.210000e-108 401.0
32 TraesCS6A01G353700 chr1B 92.308 273 18 1 1089 1361 683657200 683657469 6.250000e-103 385.0
33 TraesCS6A01G353700 chr1B 91.912 272 19 1 1090 1361 143667533 143667265 1.050000e-100 377.0
34 TraesCS6A01G353700 chr1D 87.023 262 25 2 1018 1279 82790000 82789748 1.810000e-73 287.0
35 TraesCS6A01G353700 chr5B 92.228 193 12 1 1169 1361 676286794 676286605 1.830000e-68 270.0
36 TraesCS6A01G353700 chr5B 83.482 224 13 5 1138 1361 699305045 699304846 1.890000e-43 187.0
37 TraesCS6A01G353700 chr3D 95.122 82 3 1 1688 1768 139731815 139731896 1.160000e-25 128.0
38 TraesCS6A01G353700 chr7D 88.525 61 6 1 453 512 629243619 629243679 5.530000e-09 73.1
39 TraesCS6A01G353700 chr5D 91.111 45 4 0 607 651 474191858 474191814 1.200000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G353700 chr6A 585426107 585430095 3988 False 7367.0 7367 100.0000 1 3989 1 chr6A.!!$F1 3988
1 TraesCS6A01G353700 chr6B 661337933 661341056 3123 False 2166.5 3400 91.3975 674 3989 2 chr6B.!!$F3 3315
2 TraesCS6A01G353700 chr6D 437163342 437166567 3225 False 2165.5 3374 91.7115 678 3989 2 chr6D.!!$F1 3311
3 TraesCS6A01G353700 chr4B 429268965 429270121 1156 False 909.5 1615 94.7445 1677 2865 2 chr4B.!!$F1 1188
4 TraesCS6A01G353700 chr3A 681625860 681626852 992 False 1480.0 1480 93.4930 1867 2865 1 chr3A.!!$F3 998
5 TraesCS6A01G353700 chr7A 130189204 130190537 1333 False 567.0 1072 93.0150 1677 2786 3 chr7A.!!$F1 1109
6 TraesCS6A01G353700 chr2A 202293654 202294172 518 True 913.0 913 98.4590 1 517 1 chr2A.!!$R2 516
7 TraesCS6A01G353700 chr2A 98906085 98906594 509 True 865.0 865 97.2550 1 510 1 chr2A.!!$R1 509
8 TraesCS6A01G353700 chr5A 395888200 395888712 512 True 808.0 808 94.8370 1 523 1 chr5A.!!$R1 522
9 TraesCS6A01G353700 chr2B 188832238 188832743 505 False 606.0 606 88.3270 1 511 1 chr2B.!!$F2 510
10 TraesCS6A01G353700 chr1A 175546519 175547023 504 True 547.0 547 86.2400 1 513 1 chr1A.!!$R1 512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
992 1012 0.034059 CACCACCACAGACCAGACTC 59.966 60.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2990 3242 0.533755 CTTATCCCGGCCTCTGCTTG 60.534 60.0 0.0 0.0 37.74 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
521 528 4.707988 GCGCTGTGCAAAGTTGAA 57.292 50.000 8.57 0.00 45.45 2.69
522 529 2.956469 GCGCTGTGCAAAGTTGAAA 58.044 47.368 8.57 0.00 45.45 2.69
523 530 1.490621 GCGCTGTGCAAAGTTGAAAT 58.509 45.000 8.57 0.00 45.45 2.17
524 531 1.860326 GCGCTGTGCAAAGTTGAAATT 59.140 42.857 8.57 0.00 45.45 1.82
525 532 2.097250 GCGCTGTGCAAAGTTGAAATTC 60.097 45.455 8.57 0.00 45.45 2.17
526 533 3.114809 CGCTGTGCAAAGTTGAAATTCA 58.885 40.909 5.61 0.00 0.00 2.57
527 534 3.737266 CGCTGTGCAAAGTTGAAATTCAT 59.263 39.130 5.61 0.00 0.00 2.57
528 535 4.143473 CGCTGTGCAAAGTTGAAATTCATC 60.143 41.667 5.61 0.00 0.00 2.92
529 536 4.986659 GCTGTGCAAAGTTGAAATTCATCT 59.013 37.500 5.61 0.00 0.00 2.90
530 537 5.107607 GCTGTGCAAAGTTGAAATTCATCTG 60.108 40.000 5.61 0.00 0.00 2.90
531 538 6.146601 TGTGCAAAGTTGAAATTCATCTGA 57.853 33.333 7.27 0.00 0.00 3.27
532 539 6.571605 TGTGCAAAGTTGAAATTCATCTGAA 58.428 32.000 7.27 0.00 38.56 3.02
533 540 7.040494 TGTGCAAAGTTGAAATTCATCTGAAA 58.960 30.769 7.27 0.00 37.61 2.69
534 541 7.711772 TGTGCAAAGTTGAAATTCATCTGAAAT 59.288 29.630 7.27 0.00 37.61 2.17
535 542 9.195411 GTGCAAAGTTGAAATTCATCTGAAATA 57.805 29.630 7.27 0.00 37.61 1.40
536 543 9.195411 TGCAAAGTTGAAATTCATCTGAAATAC 57.805 29.630 7.27 0.00 37.61 1.89
537 544 9.195411 GCAAAGTTGAAATTCATCTGAAATACA 57.805 29.630 7.27 0.00 37.61 2.29
541 548 9.415544 AGTTGAAATTCATCTGAAATACAAAGC 57.584 29.630 5.83 0.00 37.61 3.51
542 549 9.195411 GTTGAAATTCATCTGAAATACAAAGCA 57.805 29.630 0.00 0.00 37.61 3.91
543 550 8.746922 TGAAATTCATCTGAAATACAAAGCAC 57.253 30.769 0.00 0.00 37.61 4.40
544 551 7.814107 TGAAATTCATCTGAAATACAAAGCACC 59.186 33.333 0.00 0.00 37.61 5.01
545 552 7.472334 AATTCATCTGAAATACAAAGCACCT 57.528 32.000 0.00 0.00 37.61 4.00
546 553 6.500684 TTCATCTGAAATACAAAGCACCTC 57.499 37.500 0.00 0.00 0.00 3.85
547 554 5.559770 TCATCTGAAATACAAAGCACCTCA 58.440 37.500 0.00 0.00 0.00 3.86
548 555 6.003326 TCATCTGAAATACAAAGCACCTCAA 58.997 36.000 0.00 0.00 0.00 3.02
549 556 6.489700 TCATCTGAAATACAAAGCACCTCAAA 59.510 34.615 0.00 0.00 0.00 2.69
550 557 6.072112 TCTGAAATACAAAGCACCTCAAAC 57.928 37.500 0.00 0.00 0.00 2.93
551 558 5.592282 TCTGAAATACAAAGCACCTCAAACA 59.408 36.000 0.00 0.00 0.00 2.83
552 559 6.265196 TCTGAAATACAAAGCACCTCAAACAT 59.735 34.615 0.00 0.00 0.00 2.71
553 560 7.446931 TCTGAAATACAAAGCACCTCAAACATA 59.553 33.333 0.00 0.00 0.00 2.29
554 561 7.592938 TGAAATACAAAGCACCTCAAACATAG 58.407 34.615 0.00 0.00 0.00 2.23
555 562 7.446931 TGAAATACAAAGCACCTCAAACATAGA 59.553 33.333 0.00 0.00 0.00 1.98
556 563 7.944729 AATACAAAGCACCTCAAACATAGAT 57.055 32.000 0.00 0.00 0.00 1.98
557 564 5.633830 ACAAAGCACCTCAAACATAGATG 57.366 39.130 0.00 0.00 0.00 2.90
558 565 5.072741 ACAAAGCACCTCAAACATAGATGT 58.927 37.500 0.00 0.00 44.20 3.06
579 586 9.807921 AGATGTTTATCTTAAAAGAAGTGGGAA 57.192 29.630 0.00 0.00 40.79 3.97
580 587 9.841880 GATGTTTATCTTAAAAGAAGTGGGAAC 57.158 33.333 0.00 0.00 38.77 3.62
581 588 8.990163 TGTTTATCTTAAAAGAAGTGGGAACT 57.010 30.769 0.00 0.00 38.77 3.01
582 589 9.416284 TGTTTATCTTAAAAGAAGTGGGAACTT 57.584 29.630 0.00 0.00 38.77 2.66
610 617 8.690203 TTTTGACTCAGAAAATATGTCTTCCA 57.310 30.769 0.00 0.00 0.00 3.53
611 618 8.868522 TTTGACTCAGAAAATATGTCTTCCAT 57.131 30.769 0.00 0.00 37.58 3.41
612 619 8.868522 TTGACTCAGAAAATATGTCTTCCATT 57.131 30.769 0.00 0.00 34.86 3.16
613 620 9.958180 TTGACTCAGAAAATATGTCTTCCATTA 57.042 29.630 0.00 0.00 34.86 1.90
614 621 9.958180 TGACTCAGAAAATATGTCTTCCATTAA 57.042 29.630 0.00 0.00 34.86 1.40
616 623 9.178758 ACTCAGAAAATATGTCTTCCATTAACC 57.821 33.333 0.00 0.00 34.86 2.85
617 624 9.177608 CTCAGAAAATATGTCTTCCATTAACCA 57.822 33.333 0.00 0.00 34.86 3.67
618 625 9.527157 TCAGAAAATATGTCTTCCATTAACCAA 57.473 29.630 0.00 0.00 34.86 3.67
619 626 9.573133 CAGAAAATATGTCTTCCATTAACCAAC 57.427 33.333 0.00 0.00 34.86 3.77
620 627 9.533831 AGAAAATATGTCTTCCATTAACCAACT 57.466 29.630 0.00 0.00 34.86 3.16
621 628 9.573133 GAAAATATGTCTTCCATTAACCAACTG 57.427 33.333 0.00 0.00 34.86 3.16
622 629 7.645058 AATATGTCTTCCATTAACCAACTGG 57.355 36.000 0.00 0.00 36.74 4.00
623 630 6.134535 TATGTCTTCCATTAACCAACTGGT 57.865 37.500 0.00 0.00 41.84 4.00
624 631 5.943416 TATGTCTTCCATTAACCAACTGGTG 59.057 40.000 1.19 0.00 40.32 4.17
625 632 7.522721 TATGTCTTCCATTAACCAACTGGTGC 61.523 42.308 1.19 0.00 40.32 5.01
626 633 9.808869 TATGTCTTCCATTAACCAACTGGTGCA 62.809 40.741 1.19 0.00 40.32 4.57
632 639 3.664495 CCAACTGGTGCAGCAGAG 58.336 61.111 43.33 33.37 34.37 3.35
633 640 1.228063 CCAACTGGTGCAGCAGAGT 60.228 57.895 43.33 29.84 34.37 3.24
634 641 1.233285 CCAACTGGTGCAGCAGAGTC 61.233 60.000 43.33 6.28 34.37 3.36
635 642 1.301244 AACTGGTGCAGCAGAGTCG 60.301 57.895 43.33 23.78 34.37 4.18
636 643 3.117171 CTGGTGCAGCAGAGTCGC 61.117 66.667 36.58 0.00 0.00 5.19
637 644 3.586461 CTGGTGCAGCAGAGTCGCT 62.586 63.158 36.58 4.01 45.21 4.93
638 645 2.813042 GGTGCAGCAGAGTCGCTC 60.813 66.667 11.86 0.00 41.38 5.03
639 646 3.177920 GTGCAGCAGAGTCGCTCG 61.178 66.667 0.00 4.93 41.38 5.03
642 649 2.431430 CAGCAGAGTCGCTCGCAA 60.431 61.111 17.78 0.00 41.38 4.85
643 650 2.431601 AGCAGAGTCGCTCGCAAC 60.432 61.111 17.78 5.54 37.91 4.17
644 651 3.482783 GCAGAGTCGCTCGCAACC 61.483 66.667 13.82 0.00 35.36 3.77
645 652 2.049156 CAGAGTCGCTCGCAACCA 60.049 61.111 1.98 0.00 35.36 3.67
646 653 1.664649 CAGAGTCGCTCGCAACCAA 60.665 57.895 1.98 0.00 35.36 3.67
647 654 1.069090 AGAGTCGCTCGCAACCAAA 59.931 52.632 1.98 0.00 35.36 3.28
648 655 0.531974 AGAGTCGCTCGCAACCAAAA 60.532 50.000 1.98 0.00 35.36 2.44
649 656 0.384353 GAGTCGCTCGCAACCAAAAC 60.384 55.000 0.00 0.00 0.00 2.43
650 657 1.092921 AGTCGCTCGCAACCAAAACA 61.093 50.000 0.00 0.00 0.00 2.83
651 658 0.040425 GTCGCTCGCAACCAAAACAT 60.040 50.000 0.00 0.00 0.00 2.71
652 659 0.665835 TCGCTCGCAACCAAAACATT 59.334 45.000 0.00 0.00 0.00 2.71
653 660 1.066303 TCGCTCGCAACCAAAACATTT 59.934 42.857 0.00 0.00 0.00 2.32
654 661 2.290916 TCGCTCGCAACCAAAACATTTA 59.709 40.909 0.00 0.00 0.00 1.40
655 662 2.403698 CGCTCGCAACCAAAACATTTAC 59.596 45.455 0.00 0.00 0.00 2.01
656 663 3.376540 GCTCGCAACCAAAACATTTACA 58.623 40.909 0.00 0.00 0.00 2.41
657 664 3.799420 GCTCGCAACCAAAACATTTACAA 59.201 39.130 0.00 0.00 0.00 2.41
658 665 4.447389 GCTCGCAACCAAAACATTTACAAT 59.553 37.500 0.00 0.00 0.00 2.71
659 666 5.612276 GCTCGCAACCAAAACATTTACAATG 60.612 40.000 0.00 0.00 0.00 2.82
660 667 4.210120 TCGCAACCAAAACATTTACAATGC 59.790 37.500 0.00 0.00 0.00 3.56
661 668 4.610231 CGCAACCAAAACATTTACAATGCC 60.610 41.667 0.00 0.00 0.00 4.40
662 669 4.274459 GCAACCAAAACATTTACAATGCCA 59.726 37.500 0.00 0.00 0.00 4.92
663 670 5.560567 GCAACCAAAACATTTACAATGCCAG 60.561 40.000 0.00 0.00 0.00 4.85
664 671 4.640364 ACCAAAACATTTACAATGCCAGG 58.360 39.130 0.00 0.00 0.00 4.45
665 672 3.436359 CCAAAACATTTACAATGCCAGGC 59.564 43.478 3.66 3.66 0.00 4.85
666 673 4.063689 CAAAACATTTACAATGCCAGGCA 58.936 39.130 18.99 18.99 44.86 4.75
675 682 3.826221 TGCCAGGCATATGAACGC 58.174 55.556 11.22 2.33 31.71 4.84
712 719 2.586258 TCTGATAGGTCGCTCTTTGC 57.414 50.000 0.00 0.00 38.57 3.68
741 749 5.814764 TTCATCTACTCTGTCCGTAGAAC 57.185 43.478 4.27 0.00 44.47 3.01
747 755 6.618811 TCTACTCTGTCCGTAGAACATTTTC 58.381 40.000 0.00 0.00 40.10 2.29
753 761 4.682860 TGTCCGTAGAACATTTTCGAACTC 59.317 41.667 0.00 0.00 36.78 3.01
756 764 4.853196 CCGTAGAACATTTTCGAACTCGTA 59.147 41.667 0.00 0.00 40.80 3.43
767 775 3.614588 TCGAACTCGTAGCATAATGTCG 58.385 45.455 0.00 0.00 40.80 4.35
808 816 0.463116 AAACTCACTCGCCGGTTTGT 60.463 50.000 1.90 0.00 31.82 2.83
845 853 0.892063 AACTCGCCAGAACCTCTCTC 59.108 55.000 0.00 0.00 29.07 3.20
889 903 1.009389 CGGGAGTCAAAGAGTCGTGC 61.009 60.000 0.00 0.00 33.20 5.34
908 922 1.081242 GTCTGCATGCAAACCCACG 60.081 57.895 22.88 8.21 0.00 4.94
909 923 1.228094 TCTGCATGCAAACCCACGA 60.228 52.632 22.88 10.65 0.00 4.35
910 924 1.210931 CTGCATGCAAACCCACGAG 59.789 57.895 22.88 2.34 0.00 4.18
989 1009 0.986019 AACCACCACCACAGACCAGA 60.986 55.000 0.00 0.00 0.00 3.86
990 1010 1.071471 CCACCACCACAGACCAGAC 59.929 63.158 0.00 0.00 0.00 3.51
991 1011 1.410850 CCACCACCACAGACCAGACT 61.411 60.000 0.00 0.00 0.00 3.24
992 1012 0.034059 CACCACCACAGACCAGACTC 59.966 60.000 0.00 0.00 0.00 3.36
1084 1104 2.656651 CCGCGCTCAAGATCTCGG 60.657 66.667 5.56 0.00 0.00 4.63
1087 1107 2.656651 CGCTCAAGATCTCGGCCG 60.657 66.667 22.12 22.12 0.00 6.13
1088 1108 2.964389 GCTCAAGATCTCGGCCGC 60.964 66.667 23.51 6.27 0.00 6.53
1089 1109 2.656651 CTCAAGATCTCGGCCGCG 60.657 66.667 23.51 16.47 0.00 6.46
1421 1450 2.192979 CCCGCACAGGCATACCAT 59.807 61.111 0.00 0.00 41.24 3.55
1422 1451 1.893808 CCCGCACAGGCATACCATC 60.894 63.158 0.00 0.00 41.24 3.51
1423 1452 1.146930 CCGCACAGGCATACCATCT 59.853 57.895 0.00 0.00 41.24 2.90
1426 1455 1.331756 CGCACAGGCATACCATCTTTC 59.668 52.381 0.00 0.00 41.24 2.62
1427 1456 2.648059 GCACAGGCATACCATCTTTCT 58.352 47.619 0.00 0.00 40.72 2.52
1428 1457 2.615912 GCACAGGCATACCATCTTTCTC 59.384 50.000 0.00 0.00 40.72 2.87
1429 1458 3.683847 GCACAGGCATACCATCTTTCTCT 60.684 47.826 0.00 0.00 40.72 3.10
1430 1459 3.875727 CACAGGCATACCATCTTTCTCTG 59.124 47.826 0.00 0.00 39.06 3.35
1432 1461 4.141756 ACAGGCATACCATCTTTCTCTGAG 60.142 45.833 0.00 0.00 39.06 3.35
1434 1463 4.125703 GGCATACCATCTTTCTCTGAGTG 58.874 47.826 4.32 0.00 35.26 3.51
1435 1464 4.383552 GGCATACCATCTTTCTCTGAGTGT 60.384 45.833 4.32 0.00 35.26 3.55
1436 1465 4.808364 GCATACCATCTTTCTCTGAGTGTC 59.192 45.833 4.32 0.00 0.00 3.67
1437 1466 5.395103 GCATACCATCTTTCTCTGAGTGTCT 60.395 44.000 4.32 0.00 0.00 3.41
1438 1467 4.533919 ACCATCTTTCTCTGAGTGTCTG 57.466 45.455 4.32 0.00 0.00 3.51
1439 1468 4.155709 ACCATCTTTCTCTGAGTGTCTGA 58.844 43.478 4.32 0.00 0.00 3.27
1441 1470 5.070981 ACCATCTTTCTCTGAGTGTCTGAAA 59.929 40.000 4.32 0.00 0.00 2.69
1442 1471 5.994054 CCATCTTTCTCTGAGTGTCTGAAAA 59.006 40.000 4.32 0.00 0.00 2.29
1443 1472 6.654161 CCATCTTTCTCTGAGTGTCTGAAAAT 59.346 38.462 4.32 0.00 0.00 1.82
1444 1473 7.174599 CCATCTTTCTCTGAGTGTCTGAAAATT 59.825 37.037 4.32 0.00 0.00 1.82
1446 1475 8.594881 TCTTTCTCTGAGTGTCTGAAAATTAC 57.405 34.615 4.32 0.00 0.00 1.89
1447 1476 8.424918 TCTTTCTCTGAGTGTCTGAAAATTACT 58.575 33.333 4.32 0.00 0.00 2.24
1448 1477 7.953158 TTCTCTGAGTGTCTGAAAATTACTG 57.047 36.000 4.32 0.00 0.00 2.74
1449 1478 5.928839 TCTCTGAGTGTCTGAAAATTACTGC 59.071 40.000 4.32 0.00 0.00 4.40
1450 1479 4.997395 TCTGAGTGTCTGAAAATTACTGCC 59.003 41.667 0.00 0.00 0.00 4.85
1451 1480 3.745975 TGAGTGTCTGAAAATTACTGCCG 59.254 43.478 0.00 0.00 0.00 5.69
1452 1481 3.074412 AGTGTCTGAAAATTACTGCCGG 58.926 45.455 0.00 0.00 0.00 6.13
1454 1483 3.252458 GTGTCTGAAAATTACTGCCGGTT 59.748 43.478 1.90 0.00 0.00 4.44
1457 1486 5.708230 TGTCTGAAAATTACTGCCGGTTATT 59.292 36.000 1.90 0.00 0.00 1.40
1458 1487 6.207810 TGTCTGAAAATTACTGCCGGTTATTT 59.792 34.615 1.90 0.00 38.35 1.40
1459 1488 7.088272 GTCTGAAAATTACTGCCGGTTATTTT 58.912 34.615 11.92 11.92 44.52 1.82
1463 1492 4.632538 ATTACTGCCGGTTATTTTCTGC 57.367 40.909 1.90 0.00 0.00 4.26
1464 1493 2.200373 ACTGCCGGTTATTTTCTGCT 57.800 45.000 1.90 0.00 0.00 4.24
1467 1496 2.352960 CTGCCGGTTATTTTCTGCTCTC 59.647 50.000 1.90 0.00 0.00 3.20
1468 1497 1.327764 GCCGGTTATTTTCTGCTCTCG 59.672 52.381 1.90 0.00 0.00 4.04
1469 1498 2.888594 CCGGTTATTTTCTGCTCTCGA 58.111 47.619 0.00 0.00 0.00 4.04
1470 1499 3.458189 CCGGTTATTTTCTGCTCTCGAT 58.542 45.455 0.00 0.00 0.00 3.59
1471 1500 3.491267 CCGGTTATTTTCTGCTCTCGATC 59.509 47.826 0.00 0.00 0.00 3.69
1472 1501 4.112634 CGGTTATTTTCTGCTCTCGATCA 58.887 43.478 0.00 0.00 0.00 2.92
1473 1502 4.026475 CGGTTATTTTCTGCTCTCGATCAC 60.026 45.833 0.00 0.00 0.00 3.06
1474 1503 5.112686 GGTTATTTTCTGCTCTCGATCACT 58.887 41.667 0.00 0.00 0.00 3.41
1475 1504 5.006165 GGTTATTTTCTGCTCTCGATCACTG 59.994 44.000 0.00 0.00 0.00 3.66
1476 1505 2.001812 TTTCTGCTCTCGATCACTGC 57.998 50.000 0.00 0.00 0.00 4.40
1477 1506 1.180907 TTCTGCTCTCGATCACTGCT 58.819 50.000 0.00 0.00 0.00 4.24
1478 1507 2.044123 TCTGCTCTCGATCACTGCTA 57.956 50.000 0.00 0.00 0.00 3.49
1479 1508 1.673400 TCTGCTCTCGATCACTGCTAC 59.327 52.381 0.00 0.00 0.00 3.58
1480 1509 1.675483 CTGCTCTCGATCACTGCTACT 59.325 52.381 0.00 0.00 0.00 2.57
1481 1510 1.673400 TGCTCTCGATCACTGCTACTC 59.327 52.381 0.00 0.00 0.00 2.59
1482 1511 1.946768 GCTCTCGATCACTGCTACTCT 59.053 52.381 0.00 0.00 0.00 3.24
1483 1512 2.286950 GCTCTCGATCACTGCTACTCTG 60.287 54.545 0.00 0.00 0.00 3.35
1484 1513 1.673400 TCTCGATCACTGCTACTCTGC 59.327 52.381 0.00 0.00 0.00 4.26
1485 1514 1.403323 CTCGATCACTGCTACTCTGCA 59.597 52.381 0.00 0.00 41.05 4.41
1492 1521 3.465990 TGCTACTCTGCAGCCATTC 57.534 52.632 9.47 0.00 38.12 2.67
1493 1522 0.460811 TGCTACTCTGCAGCCATTCG 60.461 55.000 9.47 0.00 38.12 3.34
1494 1523 1.156645 GCTACTCTGCAGCCATTCGG 61.157 60.000 9.47 0.00 32.68 4.30
1495 1524 0.176680 CTACTCTGCAGCCATTCGGT 59.823 55.000 9.47 1.78 33.28 4.69
1496 1525 0.108186 TACTCTGCAGCCATTCGGTG 60.108 55.000 9.47 0.00 43.15 4.94
1497 1526 1.078918 CTCTGCAGCCATTCGGTGA 60.079 57.895 9.47 0.00 42.92 4.02
1498 1527 0.463295 CTCTGCAGCCATTCGGTGAT 60.463 55.000 9.47 0.00 42.92 3.06
1499 1528 0.462581 TCTGCAGCCATTCGGTGATC 60.463 55.000 9.47 0.00 42.92 2.92
1500 1529 1.769098 CTGCAGCCATTCGGTGATCG 61.769 60.000 0.00 0.00 42.92 3.69
1501 1530 1.815421 GCAGCCATTCGGTGATCGT 60.815 57.895 0.00 0.00 42.92 3.73
1502 1531 2.009108 CAGCCATTCGGTGATCGTG 58.991 57.895 0.00 0.00 42.92 4.35
1503 1532 0.740868 CAGCCATTCGGTGATCGTGT 60.741 55.000 0.00 0.00 42.92 4.49
1504 1533 0.460284 AGCCATTCGGTGATCGTGTC 60.460 55.000 0.00 0.00 40.32 3.67
1505 1534 0.460284 GCCATTCGGTGATCGTGTCT 60.460 55.000 0.00 0.00 40.32 3.41
1506 1535 1.280982 CCATTCGGTGATCGTGTCTG 58.719 55.000 0.00 0.00 40.32 3.51
1507 1536 1.404181 CCATTCGGTGATCGTGTCTGT 60.404 52.381 0.00 0.00 40.32 3.41
1508 1537 1.920574 CATTCGGTGATCGTGTCTGTC 59.079 52.381 0.00 0.00 40.32 3.51
1509 1538 0.955905 TTCGGTGATCGTGTCTGTCA 59.044 50.000 0.00 0.00 40.32 3.58
1510 1539 0.240145 TCGGTGATCGTGTCTGTCAC 59.760 55.000 0.00 0.00 43.03 3.67
1511 1540 0.241213 CGGTGATCGTGTCTGTCACT 59.759 55.000 3.71 0.00 44.16 3.41
1512 1541 1.702886 GGTGATCGTGTCTGTCACTG 58.297 55.000 3.71 0.00 44.16 3.66
1513 1542 1.000163 GGTGATCGTGTCTGTCACTGT 60.000 52.381 3.71 0.00 44.16 3.55
1514 1543 2.054363 GTGATCGTGTCTGTCACTGTG 58.946 52.381 0.17 0.17 44.16 3.66
1515 1544 1.681264 TGATCGTGTCTGTCACTGTGT 59.319 47.619 7.79 0.00 44.16 3.72
1516 1545 2.100749 TGATCGTGTCTGTCACTGTGTT 59.899 45.455 7.79 0.00 44.16 3.32
1517 1546 2.665649 TCGTGTCTGTCACTGTGTTT 57.334 45.000 7.79 0.00 44.16 2.83
1518 1547 2.267426 TCGTGTCTGTCACTGTGTTTG 58.733 47.619 7.79 0.00 44.16 2.93
1519 1548 1.267532 CGTGTCTGTCACTGTGTTTGC 60.268 52.381 7.79 0.00 44.16 3.68
1520 1549 1.064060 GTGTCTGTCACTGTGTTTGCC 59.936 52.381 7.79 0.00 43.13 4.52
1521 1550 1.339535 TGTCTGTCACTGTGTTTGCCA 60.340 47.619 7.79 0.00 0.00 4.92
1522 1551 1.064060 GTCTGTCACTGTGTTTGCCAC 59.936 52.381 7.79 0.00 44.78 5.01
1541 1570 4.578913 GCAGCTCGCTGACTTACA 57.421 55.556 22.09 0.00 46.30 2.41
1542 1571 2.827604 GCAGCTCGCTGACTTACAA 58.172 52.632 22.09 0.00 46.30 2.41
1543 1572 1.363744 GCAGCTCGCTGACTTACAAT 58.636 50.000 22.09 0.00 46.30 2.71
1544 1573 1.734465 GCAGCTCGCTGACTTACAATT 59.266 47.619 22.09 0.00 46.30 2.32
1545 1574 2.475187 GCAGCTCGCTGACTTACAATTG 60.475 50.000 22.09 3.24 46.30 2.32
1546 1575 2.738846 CAGCTCGCTGACTTACAATTGT 59.261 45.455 16.68 16.68 46.30 2.71
1547 1576 3.926527 CAGCTCGCTGACTTACAATTGTA 59.073 43.478 14.35 14.35 46.30 2.41
1548 1577 3.927142 AGCTCGCTGACTTACAATTGTAC 59.073 43.478 17.85 7.68 0.00 2.90
1549 1578 3.678072 GCTCGCTGACTTACAATTGTACA 59.322 43.478 17.85 11.70 0.00 2.90
1550 1579 4.201628 GCTCGCTGACTTACAATTGTACAG 60.202 45.833 21.71 21.71 0.00 2.74
1551 1580 4.878439 TCGCTGACTTACAATTGTACAGT 58.122 39.130 24.41 23.43 29.84 3.55
1552 1581 6.016213 TCGCTGACTTACAATTGTACAGTA 57.984 37.500 24.41 15.86 29.84 2.74
1553 1582 6.627243 TCGCTGACTTACAATTGTACAGTAT 58.373 36.000 24.41 9.84 29.84 2.12
1554 1583 7.764331 TCGCTGACTTACAATTGTACAGTATA 58.236 34.615 24.41 17.61 29.84 1.47
1555 1584 8.410912 TCGCTGACTTACAATTGTACAGTATAT 58.589 33.333 24.41 10.27 29.84 0.86
1556 1585 8.480066 CGCTGACTTACAATTGTACAGTATATG 58.520 37.037 24.41 17.25 29.84 1.78
1557 1586 9.314321 GCTGACTTACAATTGTACAGTATATGT 57.686 33.333 24.41 12.40 46.45 2.29
1572 1601 7.772166 ACAGTATATGTTCATCTCGTTTCAGA 58.228 34.615 0.00 0.00 39.96 3.27
1580 1609 8.322906 TGTTCATCTCGTTTCAGAATAACATT 57.677 30.769 0.00 0.00 31.29 2.71
1581 1610 8.783093 TGTTCATCTCGTTTCAGAATAACATTT 58.217 29.630 0.00 0.00 31.29 2.32
1583 1612 7.675478 TCATCTCGTTTCAGAATAACATTTCG 58.325 34.615 0.00 0.00 0.00 3.46
1584 1613 7.330946 TCATCTCGTTTCAGAATAACATTTCGT 59.669 33.333 0.00 0.00 0.00 3.85
1585 1614 6.817396 TCTCGTTTCAGAATAACATTTCGTG 58.183 36.000 0.00 0.00 0.00 4.35
1586 1615 5.379003 TCGTTTCAGAATAACATTTCGTGC 58.621 37.500 0.00 0.00 0.00 5.34
1587 1616 5.050023 TCGTTTCAGAATAACATTTCGTGCA 60.050 36.000 0.00 0.00 0.00 4.57
1588 1617 5.058008 CGTTTCAGAATAACATTTCGTGCAC 59.942 40.000 6.82 6.82 0.00 4.57
1589 1618 4.678509 TCAGAATAACATTTCGTGCACC 57.321 40.909 12.15 0.00 0.00 5.01
1590 1619 4.323417 TCAGAATAACATTTCGTGCACCT 58.677 39.130 12.15 0.00 0.00 4.00
1591 1620 4.154015 TCAGAATAACATTTCGTGCACCTG 59.846 41.667 12.15 8.04 0.00 4.00
1592 1621 3.440173 AGAATAACATTTCGTGCACCTGG 59.560 43.478 12.15 0.00 0.00 4.45
1595 1624 0.179032 ACATTTCGTGCACCTGGTCA 60.179 50.000 12.15 0.00 0.00 4.02
1597 1626 1.541147 CATTTCGTGCACCTGGTCAAT 59.459 47.619 12.15 0.00 0.00 2.57
1598 1627 1.234821 TTTCGTGCACCTGGTCAATC 58.765 50.000 12.15 0.00 0.00 2.67
1599 1628 0.396435 TTCGTGCACCTGGTCAATCT 59.604 50.000 12.15 0.00 0.00 2.40
1600 1629 0.320683 TCGTGCACCTGGTCAATCTG 60.321 55.000 12.15 0.00 0.00 2.90
1601 1630 1.878775 GTGCACCTGGTCAATCTGC 59.121 57.895 5.22 0.00 0.00 4.26
1605 1634 1.681166 GCACCTGGTCAATCTGCAGAT 60.681 52.381 23.75 23.75 36.07 2.90
1606 1635 2.014857 CACCTGGTCAATCTGCAGATG 58.985 52.381 29.34 21.44 34.49 2.90
1607 1636 1.911357 ACCTGGTCAATCTGCAGATGA 59.089 47.619 29.34 23.16 34.49 2.92
1608 1637 2.508716 ACCTGGTCAATCTGCAGATGAT 59.491 45.455 29.34 12.60 34.49 2.45
1610 1639 2.801111 CTGGTCAATCTGCAGATGATCG 59.199 50.000 29.34 17.50 34.49 3.69
1611 1640 2.431782 TGGTCAATCTGCAGATGATCGA 59.568 45.455 29.34 19.34 34.49 3.59
1612 1641 3.070590 TGGTCAATCTGCAGATGATCGAT 59.929 43.478 29.34 10.26 34.49 3.59
1613 1642 4.281688 TGGTCAATCTGCAGATGATCGATA 59.718 41.667 29.34 13.35 34.49 2.92
1614 1643 5.221501 TGGTCAATCTGCAGATGATCGATAA 60.222 40.000 29.34 12.57 34.49 1.75
1615 1644 5.873712 GGTCAATCTGCAGATGATCGATAAT 59.126 40.000 29.34 7.95 34.49 1.28
1616 1645 6.370994 GGTCAATCTGCAGATGATCGATAATT 59.629 38.462 29.34 7.99 34.49 1.40
1617 1646 7.547019 GGTCAATCTGCAGATGATCGATAATTA 59.453 37.037 29.34 0.00 34.49 1.40
1618 1647 8.379161 GTCAATCTGCAGATGATCGATAATTAC 58.621 37.037 29.34 8.64 34.49 1.89
1619 1648 8.090214 TCAATCTGCAGATGATCGATAATTACA 58.910 33.333 29.34 0.00 34.49 2.41
1620 1649 7.824704 ATCTGCAGATGATCGATAATTACAC 57.175 36.000 28.21 0.00 32.68 2.90
1621 1650 6.159293 TCTGCAGATGATCGATAATTACACC 58.841 40.000 13.74 0.00 0.00 4.16
1622 1651 6.015095 TCTGCAGATGATCGATAATTACACCT 60.015 38.462 13.74 0.00 0.00 4.00
1623 1652 5.928264 TGCAGATGATCGATAATTACACCTG 59.072 40.000 0.00 0.00 0.00 4.00
1624 1653 5.928839 GCAGATGATCGATAATTACACCTGT 59.071 40.000 0.00 0.00 0.00 4.00
1647 1717 4.367450 GCTGTGTAGCTCCTCTAATTCAG 58.633 47.826 0.00 0.00 46.57 3.02
1648 1718 4.098654 GCTGTGTAGCTCCTCTAATTCAGA 59.901 45.833 0.00 0.00 46.57 3.27
1779 1899 5.420104 AGATCCCACAGGTTTGAATCAATTC 59.580 40.000 0.00 0.00 37.31 2.17
1813 1936 3.362831 CAGTGCAAACGCATGAGAAAATC 59.637 43.478 2.50 0.00 42.51 2.17
1831 1954 8.070034 AGAAAATCCAATGCTTGATTCATGTA 57.930 30.769 0.00 0.00 0.00 2.29
1832 1955 7.977853 AGAAAATCCAATGCTTGATTCATGTAC 59.022 33.333 0.00 0.00 0.00 2.90
1848 1971 5.857268 TCATGTACTATGTGATGATGGTGG 58.143 41.667 0.00 0.00 0.00 4.61
2034 2157 2.048503 GGGTTCACGGACCTGTCG 60.049 66.667 0.00 0.00 39.71 4.35
2082 2205 1.008327 TCCATCCTGCTGGAGAACCTA 59.992 52.381 18.00 0.00 46.91 3.08
2328 2451 1.807573 CTTCTCGGCGCAGTTCCTC 60.808 63.158 10.83 0.00 0.00 3.71
2535 2658 0.331954 AGCTCTACCTCAACCTCCGA 59.668 55.000 0.00 0.00 0.00 4.55
2538 2661 1.604755 CTCTACCTCAACCTCCGATCG 59.395 57.143 8.51 8.51 0.00 3.69
2583 2706 4.838152 CGGTGGATGGACAGGGCG 62.838 72.222 0.00 0.00 0.00 6.13
2786 2909 2.282462 CAAGGGGTGCAGGGACAC 60.282 66.667 0.00 0.00 39.94 3.67
2990 3242 7.724305 TTAGGACACACAGAAGATTGTAAAC 57.276 36.000 0.00 0.00 0.00 2.01
3034 3292 6.435430 TCATACTGTCAGCGCATTTTAATT 57.565 33.333 11.47 0.00 0.00 1.40
3057 3315 4.529109 AGTCAGCTAGAAACACTTCTCC 57.471 45.455 0.00 0.00 41.19 3.71
3108 3366 4.811969 AGCATCATTTTGCCATCAGAAA 57.188 36.364 0.00 0.00 43.83 2.52
3133 3391 3.126858 GCATGGCAAGACGAGTTCATAAA 59.873 43.478 0.00 0.00 0.00 1.40
3136 3394 3.244422 TGGCAAGACGAGTTCATAAACCT 60.244 43.478 0.00 0.00 35.92 3.50
3138 3396 4.933400 GGCAAGACGAGTTCATAAACCTAA 59.067 41.667 0.00 0.00 35.92 2.69
3143 3401 6.164176 AGACGAGTTCATAAACCTAAACTGG 58.836 40.000 0.00 0.00 35.92 4.00
3290 3556 5.334319 TGCATTTCATTCATTCGCACTTAG 58.666 37.500 0.00 0.00 0.00 2.18
3431 3697 0.444651 ACAACGTCACACAAACACCG 59.555 50.000 0.00 0.00 0.00 4.94
3453 3719 0.471591 TCCTTGCCATGGGTTTGCTT 60.472 50.000 15.13 0.00 0.00 3.91
3473 3739 6.941857 TGCTTACACAATATTACAGACCAGA 58.058 36.000 0.00 0.00 0.00 3.86
3504 3770 0.393402 CAGCTTAGCCATCACAGCCA 60.393 55.000 0.00 0.00 32.25 4.75
3514 3780 2.384382 CATCACAGCCAAAACACGTTC 58.616 47.619 0.00 0.00 0.00 3.95
3515 3781 0.375454 TCACAGCCAAAACACGTTCG 59.625 50.000 0.00 0.00 0.00 3.95
3516 3782 0.375454 CACAGCCAAAACACGTTCGA 59.625 50.000 0.00 0.00 0.00 3.71
3517 3783 1.002900 CACAGCCAAAACACGTTCGAT 60.003 47.619 0.00 0.00 0.00 3.59
3518 3784 2.222213 CACAGCCAAAACACGTTCGATA 59.778 45.455 0.00 0.00 0.00 2.92
3544 3810 2.504175 ACAATACGTAGGTGGCTCCAAT 59.496 45.455 8.51 0.00 39.02 3.16
3546 3812 1.855295 TACGTAGGTGGCTCCAATCA 58.145 50.000 8.51 0.00 39.02 2.57
3557 3823 2.573369 GCTCCAATCAGATGATGCACT 58.427 47.619 0.00 0.00 34.49 4.40
3558 3824 3.495629 GGCTCCAATCAGATGATGCACTA 60.496 47.826 0.00 0.00 34.49 2.74
3559 3825 3.747010 GCTCCAATCAGATGATGCACTAG 59.253 47.826 0.00 0.00 34.49 2.57
3560 3826 3.736720 TCCAATCAGATGATGCACTAGC 58.263 45.455 0.00 0.00 42.57 3.42
3624 3890 2.610859 GGGAACAGGAGGGGAGCA 60.611 66.667 0.00 0.00 0.00 4.26
3627 3893 1.761174 GAACAGGAGGGGAGCAACA 59.239 57.895 0.00 0.00 0.00 3.33
3651 3917 1.277557 GACCAGATGAACAGACCTGCT 59.722 52.381 0.00 0.00 0.00 4.24
3756 4022 2.898738 CCAGTCAGGAGCATCGCT 59.101 61.111 0.00 0.00 43.88 4.93
3819 4085 1.276622 AGGAGTATGTCACCGGCTTT 58.723 50.000 0.00 0.00 32.04 3.51
3831 4097 1.669760 CGGCTTTGGCACGTCCTTA 60.670 57.895 0.00 0.00 40.87 2.69
3834 4100 0.796927 GCTTTGGCACGTCCTTAGTC 59.203 55.000 0.00 0.00 38.54 2.59
3849 4115 1.624479 TAGTCTCCTCCTCGTCCGCT 61.624 60.000 0.00 0.00 0.00 5.52
3886 4152 1.896660 GGCTTGTCGGCACCTGAAA 60.897 57.895 0.00 0.00 38.25 2.69
3892 4158 1.305201 GTCGGCACCTGAAAGAAACA 58.695 50.000 0.00 0.00 34.07 2.83
3932 4198 3.375500 AACACGCACGCACACACAC 62.375 57.895 0.00 0.00 0.00 3.82
3976 4242 2.351738 GCCAGAGAACAAAATCCAACCG 60.352 50.000 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
511 518 9.195411 TGTATTTCAGATGAATTTCAACTTTGC 57.805 29.630 6.45 0.00 33.54 3.68
516 523 9.195411 TGCTTTGTATTTCAGATGAATTTCAAC 57.805 29.630 2.68 0.53 33.54 3.18
517 524 9.195411 GTGCTTTGTATTTCAGATGAATTTCAA 57.805 29.630 2.68 1.60 33.54 2.69
518 525 7.814107 GGTGCTTTGTATTTCAGATGAATTTCA 59.186 33.333 0.75 0.75 33.54 2.69
519 526 8.031277 AGGTGCTTTGTATTTCAGATGAATTTC 58.969 33.333 0.00 0.00 33.54 2.17
520 527 7.899973 AGGTGCTTTGTATTTCAGATGAATTT 58.100 30.769 0.00 0.00 33.54 1.82
521 528 7.177216 TGAGGTGCTTTGTATTTCAGATGAATT 59.823 33.333 0.00 0.00 33.54 2.17
522 529 6.660521 TGAGGTGCTTTGTATTTCAGATGAAT 59.339 34.615 0.00 0.00 33.54 2.57
523 530 6.003326 TGAGGTGCTTTGTATTTCAGATGAA 58.997 36.000 0.00 0.00 0.00 2.57
524 531 5.559770 TGAGGTGCTTTGTATTTCAGATGA 58.440 37.500 0.00 0.00 0.00 2.92
525 532 5.885230 TGAGGTGCTTTGTATTTCAGATG 57.115 39.130 0.00 0.00 0.00 2.90
526 533 6.265196 TGTTTGAGGTGCTTTGTATTTCAGAT 59.735 34.615 0.00 0.00 0.00 2.90
527 534 5.592282 TGTTTGAGGTGCTTTGTATTTCAGA 59.408 36.000 0.00 0.00 0.00 3.27
528 535 5.830912 TGTTTGAGGTGCTTTGTATTTCAG 58.169 37.500 0.00 0.00 0.00 3.02
529 536 5.843673 TGTTTGAGGTGCTTTGTATTTCA 57.156 34.783 0.00 0.00 0.00 2.69
530 537 7.816640 TCTATGTTTGAGGTGCTTTGTATTTC 58.183 34.615 0.00 0.00 0.00 2.17
531 538 7.759489 TCTATGTTTGAGGTGCTTTGTATTT 57.241 32.000 0.00 0.00 0.00 1.40
532 539 7.394359 ACATCTATGTTTGAGGTGCTTTGTATT 59.606 33.333 0.00 0.00 37.90 1.89
533 540 6.886459 ACATCTATGTTTGAGGTGCTTTGTAT 59.114 34.615 0.00 0.00 37.90 2.29
534 541 6.237901 ACATCTATGTTTGAGGTGCTTTGTA 58.762 36.000 0.00 0.00 37.90 2.41
535 542 5.072741 ACATCTATGTTTGAGGTGCTTTGT 58.927 37.500 0.00 0.00 37.90 2.83
536 543 5.633830 ACATCTATGTTTGAGGTGCTTTG 57.366 39.130 0.00 0.00 37.90 2.77
553 560 9.807921 TTCCCACTTCTTTTAAGATAAACATCT 57.192 29.630 0.00 0.00 34.49 2.90
554 561 9.841880 GTTCCCACTTCTTTTAAGATAAACATC 57.158 33.333 0.00 0.00 34.49 3.06
555 562 9.588096 AGTTCCCACTTCTTTTAAGATAAACAT 57.412 29.630 0.00 0.00 34.49 2.71
556 563 8.990163 AGTTCCCACTTCTTTTAAGATAAACA 57.010 30.769 0.00 0.00 34.49 2.83
584 591 9.130661 TGGAAGACATATTTTCTGAGTCAAAAA 57.869 29.630 12.49 12.49 0.00 1.94
585 592 8.690203 TGGAAGACATATTTTCTGAGTCAAAA 57.310 30.769 0.00 0.00 0.00 2.44
586 593 8.868522 ATGGAAGACATATTTTCTGAGTCAAA 57.131 30.769 0.00 0.00 38.26 2.69
587 594 8.868522 AATGGAAGACATATTTTCTGAGTCAA 57.131 30.769 0.00 0.00 39.40 3.18
588 595 9.958180 TTAATGGAAGACATATTTTCTGAGTCA 57.042 29.630 0.00 0.00 39.40 3.41
590 597 9.178758 GGTTAATGGAAGACATATTTTCTGAGT 57.821 33.333 0.00 0.00 39.40 3.41
591 598 9.177608 TGGTTAATGGAAGACATATTTTCTGAG 57.822 33.333 0.00 0.00 39.40 3.35
592 599 9.527157 TTGGTTAATGGAAGACATATTTTCTGA 57.473 29.630 0.00 0.00 39.40 3.27
593 600 9.573133 GTTGGTTAATGGAAGACATATTTTCTG 57.427 33.333 0.00 0.00 39.40 3.02
594 601 9.533831 AGTTGGTTAATGGAAGACATATTTTCT 57.466 29.630 0.00 0.00 39.40 2.52
595 602 9.573133 CAGTTGGTTAATGGAAGACATATTTTC 57.427 33.333 0.00 0.00 39.40 2.29
596 603 8.531146 CCAGTTGGTTAATGGAAGACATATTTT 58.469 33.333 0.00 0.00 39.40 1.82
597 604 8.066612 CCAGTTGGTTAATGGAAGACATATTT 57.933 34.615 0.00 0.00 39.40 1.40
598 605 7.645058 CCAGTTGGTTAATGGAAGACATATT 57.355 36.000 0.00 0.00 39.40 1.28
615 622 1.228063 ACTCTGCTGCACCAGTTGG 60.228 57.895 8.84 0.00 42.17 3.77
616 623 1.563435 CGACTCTGCTGCACCAGTTG 61.563 60.000 8.84 9.50 33.43 3.16
617 624 1.301244 CGACTCTGCTGCACCAGTT 60.301 57.895 8.84 0.00 33.43 3.16
618 625 2.341543 CGACTCTGCTGCACCAGT 59.658 61.111 8.84 8.82 33.43 4.00
619 626 3.117171 GCGACTCTGCTGCACCAG 61.117 66.667 2.36 2.36 34.12 4.00
620 627 3.619767 AGCGACTCTGCTGCACCA 61.620 61.111 0.00 0.00 45.28 4.17
627 634 3.482783 GGTTGCGAGCGACTCTGC 61.483 66.667 14.35 12.68 33.30 4.26
628 635 1.221466 TTTGGTTGCGAGCGACTCTG 61.221 55.000 14.35 1.54 0.00 3.35
629 636 0.531974 TTTTGGTTGCGAGCGACTCT 60.532 50.000 14.35 0.00 0.00 3.24
630 637 0.384353 GTTTTGGTTGCGAGCGACTC 60.384 55.000 14.35 6.28 0.00 3.36
631 638 1.092921 TGTTTTGGTTGCGAGCGACT 61.093 50.000 14.35 0.00 0.00 4.18
632 639 0.040425 ATGTTTTGGTTGCGAGCGAC 60.040 50.000 6.91 6.91 0.00 5.19
633 640 0.665835 AATGTTTTGGTTGCGAGCGA 59.334 45.000 0.00 0.00 0.00 4.93
634 641 1.486439 AAATGTTTTGGTTGCGAGCG 58.514 45.000 0.00 0.00 0.00 5.03
635 642 3.376540 TGTAAATGTTTTGGTTGCGAGC 58.623 40.909 0.00 0.00 0.00 5.03
636 643 5.612276 GCATTGTAAATGTTTTGGTTGCGAG 60.612 40.000 2.23 0.00 0.00 5.03
637 644 4.210120 GCATTGTAAATGTTTTGGTTGCGA 59.790 37.500 2.23 0.00 0.00 5.10
638 645 4.453339 GCATTGTAAATGTTTTGGTTGCG 58.547 39.130 2.23 0.00 0.00 4.85
639 646 4.274459 TGGCATTGTAAATGTTTTGGTTGC 59.726 37.500 2.23 0.00 0.00 4.17
640 647 5.049543 CCTGGCATTGTAAATGTTTTGGTTG 60.050 40.000 0.00 0.00 0.00 3.77
641 648 5.062528 CCTGGCATTGTAAATGTTTTGGTT 58.937 37.500 0.00 0.00 0.00 3.67
642 649 4.640364 CCTGGCATTGTAAATGTTTTGGT 58.360 39.130 0.00 0.00 0.00 3.67
643 650 3.436359 GCCTGGCATTGTAAATGTTTTGG 59.564 43.478 15.17 1.98 0.00 3.28
644 651 4.063689 TGCCTGGCATTGTAAATGTTTTG 58.936 39.130 19.30 0.00 31.71 2.44
645 652 4.348863 TGCCTGGCATTGTAAATGTTTT 57.651 36.364 19.30 0.00 31.71 2.43
658 665 0.679321 TTGCGTTCATATGCCTGGCA 60.679 50.000 25.65 25.65 44.86 4.92
659 666 0.455410 TTTGCGTTCATATGCCTGGC 59.545 50.000 12.87 12.87 35.33 4.85
660 667 2.099592 ACATTTGCGTTCATATGCCTGG 59.900 45.455 0.00 0.00 35.79 4.45
661 668 3.425577 ACATTTGCGTTCATATGCCTG 57.574 42.857 0.00 0.00 35.79 4.85
662 669 4.454728 AAACATTTGCGTTCATATGCCT 57.545 36.364 0.00 0.00 35.79 4.75
663 670 4.201705 CCAAAACATTTGCGTTCATATGCC 60.202 41.667 0.00 0.00 35.79 4.40
664 671 4.388469 ACCAAAACATTTGCGTTCATATGC 59.612 37.500 0.00 0.00 35.79 3.14
665 672 5.632764 TGACCAAAACATTTGCGTTCATATG 59.367 36.000 0.00 0.00 37.56 1.78
666 673 5.633182 GTGACCAAAACATTTGCGTTCATAT 59.367 36.000 0.00 0.00 0.00 1.78
667 674 4.979197 GTGACCAAAACATTTGCGTTCATA 59.021 37.500 0.00 0.00 0.00 2.15
668 675 3.801594 GTGACCAAAACATTTGCGTTCAT 59.198 39.130 0.00 0.00 0.00 2.57
669 676 3.119316 AGTGACCAAAACATTTGCGTTCA 60.119 39.130 0.00 0.00 0.00 3.18
670 677 3.443976 AGTGACCAAAACATTTGCGTTC 58.556 40.909 0.00 0.00 0.00 3.95
671 678 3.518634 AGTGACCAAAACATTTGCGTT 57.481 38.095 0.00 0.00 0.00 4.84
672 679 3.518634 AAGTGACCAAAACATTTGCGT 57.481 38.095 0.00 0.00 0.00 5.24
675 682 7.596248 CCTATCAGAAAGTGACCAAAACATTTG 59.404 37.037 0.00 0.00 38.28 2.32
712 719 4.498850 CGGACAGAGTAGATGAATGACCAG 60.499 50.000 0.00 0.00 0.00 4.00
741 749 6.705782 ACATTATGCTACGAGTTCGAAAATG 58.294 36.000 8.72 4.93 43.02 2.32
747 755 3.614588 TCGACATTATGCTACGAGTTCG 58.385 45.455 0.00 0.00 46.33 3.95
753 761 4.919788 GACGAATTCGACATTATGCTACG 58.080 43.478 33.05 3.33 43.02 3.51
776 784 1.136611 GTGAGTTTCACACGCATCGTC 60.137 52.381 4.42 0.00 46.22 4.20
777 785 0.859232 GTGAGTTTCACACGCATCGT 59.141 50.000 4.42 0.00 46.22 3.73
778 786 3.639222 GTGAGTTTCACACGCATCG 57.361 52.632 4.42 0.00 46.22 3.84
802 810 1.202557 TGTGTCCCTGTCGTACAAACC 60.203 52.381 0.00 0.00 0.00 3.27
808 816 1.888512 GTTACCTGTGTCCCTGTCGTA 59.111 52.381 0.00 0.00 0.00 3.43
875 889 0.778815 CAGACGCACGACTCTTTGAC 59.221 55.000 0.00 0.00 0.00 3.18
876 890 0.939577 GCAGACGCACGACTCTTTGA 60.940 55.000 0.00 0.00 38.36 2.69
889 903 1.081242 GTGGGTTTGCATGCAGACG 60.081 57.895 28.76 0.00 32.60 4.18
938 952 4.880537 AGCTCGCCCGCTCGATTG 62.881 66.667 0.00 0.00 37.87 2.67
939 953 4.577246 GAGCTCGCCCGCTCGATT 62.577 66.667 0.00 0.00 45.91 3.34
989 1009 1.188219 AGGCGTCATGTCTGGTGAGT 61.188 55.000 0.00 0.00 0.00 3.41
990 1010 0.459237 GAGGCGTCATGTCTGGTGAG 60.459 60.000 0.52 0.00 27.59 3.51
991 1011 1.591703 GAGGCGTCATGTCTGGTGA 59.408 57.895 0.52 0.00 27.59 4.02
992 1012 1.448540 GGAGGCGTCATGTCTGGTG 60.449 63.158 8.91 0.00 27.59 4.17
1140 1160 4.548513 CTCCTCCCCCTCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
1141 1161 4.890306 GCTCCTCCCCCTCCTCCC 62.890 77.778 0.00 0.00 0.00 4.30
1142 1162 4.890306 GGCTCCTCCCCCTCCTCC 62.890 77.778 0.00 0.00 0.00 4.30
1414 1443 6.041511 CAGACACTCAGAGAAAGATGGTATG 58.958 44.000 3.79 0.00 0.00 2.39
1419 1448 7.670009 ATTTTCAGACACTCAGAGAAAGATG 57.330 36.000 3.79 0.00 30.83 2.90
1421 1450 8.424918 AGTAATTTTCAGACACTCAGAGAAAGA 58.575 33.333 3.79 0.00 30.83 2.52
1422 1451 8.494347 CAGTAATTTTCAGACACTCAGAGAAAG 58.506 37.037 3.79 0.00 30.83 2.62
1423 1452 7.041780 GCAGTAATTTTCAGACACTCAGAGAAA 60.042 37.037 3.79 0.00 0.00 2.52
1426 1455 5.121454 GGCAGTAATTTTCAGACACTCAGAG 59.879 44.000 0.00 0.00 0.00 3.35
1427 1456 4.997395 GGCAGTAATTTTCAGACACTCAGA 59.003 41.667 0.00 0.00 0.00 3.27
1428 1457 4.143030 CGGCAGTAATTTTCAGACACTCAG 60.143 45.833 0.00 0.00 0.00 3.35
1429 1458 3.745975 CGGCAGTAATTTTCAGACACTCA 59.254 43.478 0.00 0.00 0.00 3.41
1430 1459 3.125316 CCGGCAGTAATTTTCAGACACTC 59.875 47.826 0.00 0.00 0.00 3.51
1432 1461 2.812011 ACCGGCAGTAATTTTCAGACAC 59.188 45.455 0.00 0.00 0.00 3.67
1434 1463 5.813080 ATAACCGGCAGTAATTTTCAGAC 57.187 39.130 0.00 0.00 0.00 3.51
1435 1464 6.827586 AAATAACCGGCAGTAATTTTCAGA 57.172 33.333 0.00 0.00 0.00 3.27
1436 1465 7.273381 CAGAAAATAACCGGCAGTAATTTTCAG 59.727 37.037 25.63 19.67 43.80 3.02
1437 1466 7.087639 CAGAAAATAACCGGCAGTAATTTTCA 58.912 34.615 25.63 0.00 43.80 2.69
1438 1467 6.034577 GCAGAAAATAACCGGCAGTAATTTTC 59.965 38.462 21.00 21.00 42.63 2.29
1439 1468 5.867174 GCAGAAAATAACCGGCAGTAATTTT 59.133 36.000 0.00 6.93 33.63 1.82
1441 1470 4.705023 AGCAGAAAATAACCGGCAGTAATT 59.295 37.500 0.00 0.00 0.00 1.40
1442 1471 4.270008 AGCAGAAAATAACCGGCAGTAAT 58.730 39.130 0.00 0.00 0.00 1.89
1443 1472 3.681593 AGCAGAAAATAACCGGCAGTAA 58.318 40.909 0.00 0.00 0.00 2.24
1444 1473 3.055385 AGAGCAGAAAATAACCGGCAGTA 60.055 43.478 0.00 0.00 0.00 2.74
1446 1475 2.352960 GAGAGCAGAAAATAACCGGCAG 59.647 50.000 0.00 0.00 0.00 4.85
1447 1476 2.356135 GAGAGCAGAAAATAACCGGCA 58.644 47.619 0.00 0.00 0.00 5.69
1448 1477 1.327764 CGAGAGCAGAAAATAACCGGC 59.672 52.381 0.00 0.00 0.00 6.13
1449 1478 2.888594 TCGAGAGCAGAAAATAACCGG 58.111 47.619 0.00 0.00 0.00 5.28
1450 1479 4.026475 GTGATCGAGAGCAGAAAATAACCG 60.026 45.833 0.00 0.00 0.00 4.44
1451 1480 5.006165 CAGTGATCGAGAGCAGAAAATAACC 59.994 44.000 0.00 0.00 0.00 2.85
1452 1481 5.501574 GCAGTGATCGAGAGCAGAAAATAAC 60.502 44.000 0.00 0.00 0.00 1.89
1454 1483 4.115516 GCAGTGATCGAGAGCAGAAAATA 58.884 43.478 0.00 0.00 0.00 1.40
1457 1486 1.547820 AGCAGTGATCGAGAGCAGAAA 59.452 47.619 0.00 0.00 0.00 2.52
1458 1487 1.180907 AGCAGTGATCGAGAGCAGAA 58.819 50.000 0.00 0.00 0.00 3.02
1459 1488 1.673400 GTAGCAGTGATCGAGAGCAGA 59.327 52.381 0.00 0.00 0.00 4.26
1460 1489 1.675483 AGTAGCAGTGATCGAGAGCAG 59.325 52.381 0.00 0.00 0.00 4.24
1461 1490 1.673400 GAGTAGCAGTGATCGAGAGCA 59.327 52.381 0.00 0.00 0.00 4.26
1462 1491 1.946768 AGAGTAGCAGTGATCGAGAGC 59.053 52.381 0.00 0.00 0.00 4.09
1463 1492 2.286950 GCAGAGTAGCAGTGATCGAGAG 60.287 54.545 0.00 0.00 0.00 3.20
1464 1493 1.673400 GCAGAGTAGCAGTGATCGAGA 59.327 52.381 0.00 0.00 0.00 4.04
1474 1503 0.460811 CGAATGGCTGCAGAGTAGCA 60.461 55.000 20.43 0.00 42.88 3.49
1475 1504 1.156645 CCGAATGGCTGCAGAGTAGC 61.157 60.000 20.43 1.13 40.41 3.58
1476 1505 0.176680 ACCGAATGGCTGCAGAGTAG 59.823 55.000 20.43 2.57 39.70 2.57
1477 1506 0.108186 CACCGAATGGCTGCAGAGTA 60.108 55.000 20.43 2.22 39.70 2.59
1478 1507 1.376424 CACCGAATGGCTGCAGAGT 60.376 57.895 20.43 0.00 39.70 3.24
1479 1508 0.463295 ATCACCGAATGGCTGCAGAG 60.463 55.000 20.43 0.00 39.70 3.35
1480 1509 0.462581 GATCACCGAATGGCTGCAGA 60.463 55.000 20.43 0.00 39.70 4.26
1481 1510 1.769098 CGATCACCGAATGGCTGCAG 61.769 60.000 10.11 10.11 41.76 4.41
1482 1511 1.815003 CGATCACCGAATGGCTGCA 60.815 57.895 0.50 0.00 41.76 4.41
1483 1512 1.815421 ACGATCACCGAATGGCTGC 60.815 57.895 0.00 0.00 41.76 5.25
1484 1513 0.740868 ACACGATCACCGAATGGCTG 60.741 55.000 0.00 0.00 41.76 4.85
1485 1514 0.460284 GACACGATCACCGAATGGCT 60.460 55.000 0.00 0.00 41.76 4.75
1486 1515 0.460284 AGACACGATCACCGAATGGC 60.460 55.000 0.00 0.00 41.76 4.40
1487 1516 1.280982 CAGACACGATCACCGAATGG 58.719 55.000 0.00 0.00 41.76 3.16
1488 1517 1.920574 GACAGACACGATCACCGAATG 59.079 52.381 0.00 0.00 41.76 2.67
1489 1518 1.544246 TGACAGACACGATCACCGAAT 59.456 47.619 0.00 0.00 41.76 3.34
1490 1519 0.955905 TGACAGACACGATCACCGAA 59.044 50.000 0.00 0.00 41.76 4.30
1491 1520 0.240145 GTGACAGACACGATCACCGA 59.760 55.000 0.00 0.00 41.76 4.69
1492 1521 2.725644 GTGACAGACACGATCACCG 58.274 57.895 0.00 0.00 45.44 4.94
1501 1530 1.339535 TGGCAAACACAGTGACAGACA 60.340 47.619 7.81 1.25 28.28 3.41
1502 1531 1.378531 TGGCAAACACAGTGACAGAC 58.621 50.000 7.81 0.00 28.28 3.51
1503 1532 3.871701 TGGCAAACACAGTGACAGA 57.128 47.368 7.81 0.00 28.28 3.41
1524 1553 1.363744 ATTGTAAGTCAGCGAGCTGC 58.636 50.000 19.33 14.18 43.31 5.25
1525 1554 2.738846 ACAATTGTAAGTCAGCGAGCTG 59.261 45.455 18.20 18.20 44.86 4.24
1526 1555 3.045601 ACAATTGTAAGTCAGCGAGCT 57.954 42.857 9.97 0.00 0.00 4.09
1527 1556 3.678072 TGTACAATTGTAAGTCAGCGAGC 59.322 43.478 19.63 4.48 31.52 5.03
1528 1557 4.923871 ACTGTACAATTGTAAGTCAGCGAG 59.076 41.667 24.13 12.92 30.05 5.03
1529 1558 4.878439 ACTGTACAATTGTAAGTCAGCGA 58.122 39.130 24.13 2.10 30.05 4.93
1530 1559 6.887376 ATACTGTACAATTGTAAGTCAGCG 57.113 37.500 24.13 11.15 30.05 5.18
1531 1560 9.314321 ACATATACTGTACAATTGTAAGTCAGC 57.686 33.333 24.13 12.36 35.91 4.26
1539 1568 9.249457 CGAGATGAACATATACTGTACAATTGT 57.751 33.333 16.68 16.68 36.98 2.71
1540 1569 9.249457 ACGAGATGAACATATACTGTACAATTG 57.751 33.333 3.24 3.24 36.98 2.32
1541 1570 9.817809 AACGAGATGAACATATACTGTACAATT 57.182 29.630 0.00 0.00 36.98 2.32
1542 1571 9.817809 AAACGAGATGAACATATACTGTACAAT 57.182 29.630 0.00 0.00 36.98 2.71
1543 1572 9.297586 GAAACGAGATGAACATATACTGTACAA 57.702 33.333 0.00 0.00 36.98 2.41
1544 1573 8.463607 TGAAACGAGATGAACATATACTGTACA 58.536 33.333 0.00 0.00 36.98 2.90
1545 1574 8.851960 TGAAACGAGATGAACATATACTGTAC 57.148 34.615 0.00 0.00 36.98 2.90
1546 1575 8.899771 TCTGAAACGAGATGAACATATACTGTA 58.100 33.333 0.00 0.00 36.98 2.74
1547 1576 7.772166 TCTGAAACGAGATGAACATATACTGT 58.228 34.615 0.00 0.00 40.84 3.55
1548 1577 8.634475 TTCTGAAACGAGATGAACATATACTG 57.366 34.615 0.00 0.00 0.00 2.74
1552 1581 9.599866 TGTTATTCTGAAACGAGATGAACATAT 57.400 29.630 0.00 0.00 28.94 1.78
1553 1582 8.996024 TGTTATTCTGAAACGAGATGAACATA 57.004 30.769 0.00 0.00 28.94 2.29
1554 1583 7.905604 TGTTATTCTGAAACGAGATGAACAT 57.094 32.000 0.00 0.00 28.94 2.71
1555 1584 7.905604 ATGTTATTCTGAAACGAGATGAACA 57.094 32.000 0.00 0.00 34.20 3.18
1556 1585 9.267096 GAAATGTTATTCTGAAACGAGATGAAC 57.733 33.333 0.00 0.00 0.00 3.18
1557 1586 8.168626 CGAAATGTTATTCTGAAACGAGATGAA 58.831 33.333 0.00 0.00 0.00 2.57
1558 1587 7.330946 ACGAAATGTTATTCTGAAACGAGATGA 59.669 33.333 0.00 0.00 0.00 2.92
1559 1588 7.423598 CACGAAATGTTATTCTGAAACGAGATG 59.576 37.037 0.00 0.00 0.00 2.90
1572 1601 3.153919 ACCAGGTGCACGAAATGTTATT 58.846 40.909 11.45 0.00 0.00 1.40
1577 1606 0.950836 TTGACCAGGTGCACGAAATG 59.049 50.000 11.45 6.87 0.00 2.32
1580 1609 0.396435 AGATTGACCAGGTGCACGAA 59.604 50.000 11.45 0.00 0.00 3.85
1581 1610 0.320683 CAGATTGACCAGGTGCACGA 60.321 55.000 11.45 0.00 0.00 4.35
1583 1612 0.890542 TGCAGATTGACCAGGTGCAC 60.891 55.000 8.80 8.80 39.17 4.57
1584 1613 0.607217 CTGCAGATTGACCAGGTGCA 60.607 55.000 8.42 0.00 41.72 4.57
1585 1614 0.321919 TCTGCAGATTGACCAGGTGC 60.322 55.000 13.74 0.00 34.62 5.01
1586 1615 2.014857 CATCTGCAGATTGACCAGGTG 58.985 52.381 26.70 10.05 32.11 4.00
1587 1616 1.911357 TCATCTGCAGATTGACCAGGT 59.089 47.619 26.70 0.00 31.21 4.00
1588 1617 2.704464 TCATCTGCAGATTGACCAGG 57.296 50.000 26.70 13.47 31.21 4.45
1589 1618 2.801111 CGATCATCTGCAGATTGACCAG 59.199 50.000 26.70 14.19 31.21 4.00
1590 1619 2.431782 TCGATCATCTGCAGATTGACCA 59.568 45.455 26.70 8.29 32.34 4.02
1591 1620 3.103447 TCGATCATCTGCAGATTGACC 57.897 47.619 26.70 16.53 32.34 4.02
1592 1621 6.964741 ATTATCGATCATCTGCAGATTGAC 57.035 37.500 26.70 17.60 38.40 3.18
1595 1624 7.332926 GGTGTAATTATCGATCATCTGCAGATT 59.667 37.037 26.70 13.72 31.21 2.40
1597 1626 6.015095 AGGTGTAATTATCGATCATCTGCAGA 60.015 38.462 20.79 20.79 0.00 4.26
1598 1627 6.090493 CAGGTGTAATTATCGATCATCTGCAG 59.910 42.308 7.63 7.63 32.01 4.41
1599 1628 5.928264 CAGGTGTAATTATCGATCATCTGCA 59.072 40.000 10.35 0.00 32.01 4.41
1600 1629 5.928839 ACAGGTGTAATTATCGATCATCTGC 59.071 40.000 19.03 4.43 39.82 4.26
1601 1630 6.128715 GCACAGGTGTAATTATCGATCATCTG 60.129 42.308 18.01 18.01 41.31 2.90
1605 1634 5.049828 CAGCACAGGTGTAATTATCGATCA 58.950 41.667 0.00 0.00 0.00 2.92
1606 1635 5.050490 ACAGCACAGGTGTAATTATCGATC 58.950 41.667 0.00 0.00 42.67 3.69
1607 1636 4.811024 CACAGCACAGGTGTAATTATCGAT 59.189 41.667 2.16 2.16 42.60 3.59
1608 1637 4.180817 CACAGCACAGGTGTAATTATCGA 58.819 43.478 1.18 0.00 42.60 3.59
1616 1645 3.906660 GCTACACAGCACAGGTGTA 57.093 52.632 1.18 5.41 46.94 2.90
1623 1652 9.508155 ATCTGAATTAGAGGAGCTACACAGCAC 62.508 44.444 0.00 0.00 44.11 4.40
1624 1653 7.592208 ATCTGAATTAGAGGAGCTACACAGCA 61.592 42.308 0.00 0.00 44.11 4.41
1647 1717 2.992543 GCTAACCTGCAGATCGATCATC 59.007 50.000 26.47 17.12 0.00 2.92
1648 1718 2.289320 GGCTAACCTGCAGATCGATCAT 60.289 50.000 26.47 9.59 34.04 2.45
1678 1776 3.760035 TCGACGAGCTGCCCTTCC 61.760 66.667 0.00 0.00 0.00 3.46
1831 1954 3.054139 AGTTGCCACCATCATCACATAGT 60.054 43.478 0.00 0.00 0.00 2.12
1832 1955 3.314357 CAGTTGCCACCATCATCACATAG 59.686 47.826 0.00 0.00 0.00 2.23
2349 2472 1.416813 GGACGAGCAGCATCGACTTG 61.417 60.000 17.64 0.00 45.56 3.16
2535 2658 2.283676 ACCCAGGTGTCCGACGAT 60.284 61.111 0.00 0.00 0.00 3.73
2538 2661 4.699522 GCCACCCAGGTGTCCGAC 62.700 72.222 15.49 0.00 44.02 4.79
2786 2909 2.025418 GCGGTGTACCTGTTGACGG 61.025 63.158 0.00 0.00 0.00 4.79
2787 2910 2.025418 GGCGGTGTACCTGTTGACG 61.025 63.158 0.00 0.00 0.00 4.35
2931 3183 1.301423 TCAAAGAAACCACGGAACCG 58.699 50.000 11.83 11.83 46.03 4.44
2934 3186 3.546724 TGTGATCAAAGAAACCACGGAA 58.453 40.909 0.00 0.00 0.00 4.30
2990 3242 0.533755 CTTATCCCGGCCTCTGCTTG 60.534 60.000 0.00 0.00 37.74 4.01
3034 3292 5.335740 CGGAGAAGTGTTTCTAGCTGACTAA 60.336 44.000 0.00 0.00 43.63 2.24
3108 3366 9.896215 GTTTATGAACTCGTCTTGCCATGCAAT 62.896 40.741 1.49 0.00 39.02 3.56
3133 3391 8.990163 TGAGAAGTTAAAAATCCAGTTTAGGT 57.010 30.769 0.00 0.00 0.00 3.08
3138 3396 8.966868 TGTTCTTGAGAAGTTAAAAATCCAGTT 58.033 29.630 0.00 0.00 34.27 3.16
3214 3477 9.868277 CTAATCTGAACAGACTCACTCTATTTT 57.132 33.333 6.67 0.00 40.75 1.82
3223 3486 8.534496 TCATGATTTCTAATCTGAACAGACTCA 58.466 33.333 6.67 3.24 40.75 3.41
3290 3556 2.100584 TCTGTTTCATTGGTGTGTTGCC 59.899 45.455 0.00 0.00 0.00 4.52
3348 3614 6.371548 TGCCAGTATTTCAACAGTGAAGATAC 59.628 38.462 0.00 10.50 44.49 2.24
3473 3739 6.268617 TGATGGCTAAGCTGACTATCTGTATT 59.731 38.462 8.17 0.00 0.00 1.89
3514 3780 5.319139 CCACCTACGTATTGTATCGTATCG 58.681 45.833 0.00 0.00 40.76 2.92
3515 3781 5.091431 GCCACCTACGTATTGTATCGTATC 58.909 45.833 0.00 0.00 40.76 2.24
3516 3782 4.763793 AGCCACCTACGTATTGTATCGTAT 59.236 41.667 0.00 0.00 40.76 3.06
3517 3783 4.136796 AGCCACCTACGTATTGTATCGTA 58.863 43.478 0.00 0.00 40.70 3.43
3518 3784 2.954318 AGCCACCTACGTATTGTATCGT 59.046 45.455 0.00 0.00 42.82 3.73
3525 3791 2.769663 TGATTGGAGCCACCTACGTATT 59.230 45.455 0.00 0.00 39.86 1.89
3567 3833 0.613777 ACCTGGTTACCTGCTAGTGC 59.386 55.000 2.07 0.00 40.20 4.40
3568 3834 1.135083 CGACCTGGTTACCTGCTAGTG 60.135 57.143 0.00 0.00 0.00 2.74
3569 3835 1.183549 CGACCTGGTTACCTGCTAGT 58.816 55.000 0.00 0.00 0.00 2.57
3570 3836 1.471119 TCGACCTGGTTACCTGCTAG 58.529 55.000 0.00 0.00 0.00 3.42
3624 3890 2.711009 TCTGTTCATCTGGTCCCTTGTT 59.289 45.455 0.00 0.00 0.00 2.83
3627 3893 1.630878 GGTCTGTTCATCTGGTCCCTT 59.369 52.381 0.00 0.00 0.00 3.95
3756 4022 0.035152 CCCTGGCAAGCATGTACTCA 60.035 55.000 0.00 0.00 0.00 3.41
3819 4085 0.251653 AGGAGACTAAGGACGTGCCA 60.252 55.000 2.38 0.00 40.61 4.92
3834 4100 1.153745 CAAAGCGGACGAGGAGGAG 60.154 63.158 0.00 0.00 0.00 3.69
3849 4115 0.538057 CACTGCTCCCCTTCAGCAAA 60.538 55.000 0.00 0.00 46.22 3.68
3886 4152 1.467342 GCTAAATTCGCCGGTGTTTCT 59.533 47.619 16.01 1.34 0.00 2.52
3892 4158 1.199097 CAACTTGCTAAATTCGCCGGT 59.801 47.619 1.90 0.00 0.00 5.28
3919 4185 1.424403 TATGTAGTGTGTGTGCGTGC 58.576 50.000 0.00 0.00 0.00 5.34
3920 4186 4.661993 AATTATGTAGTGTGTGTGCGTG 57.338 40.909 0.00 0.00 0.00 5.34
3921 4187 6.978343 ATTAATTATGTAGTGTGTGTGCGT 57.022 33.333 0.00 0.00 0.00 5.24
3922 4188 9.929722 ATTAATTAATTATGTAGTGTGTGTGCG 57.070 29.630 8.70 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.