Multiple sequence alignment - TraesCS6A01G352600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G352600 chr6A 100.000 3443 0 0 1 3443 584959443 584956001 0.000000e+00 6359.0
1 TraesCS6A01G352600 chr6A 86.156 2232 270 19 255 2463 584993843 584996058 0.000000e+00 2374.0
2 TraesCS6A01G352600 chr6A 97.297 37 1 0 1838 1874 445254084 445254048 2.870000e-06 63.9
3 TraesCS6A01G352600 chr6D 89.459 3216 261 37 259 3443 436767019 436763851 0.000000e+00 3989.0
4 TraesCS6A01G352600 chr6B 86.974 2211 246 22 279 2463 660258249 660260443 0.000000e+00 2449.0
5 TraesCS6A01G352600 chr6B 94.872 39 2 0 1836 1874 475662998 475662960 1.030000e-05 62.1
6 TraesCS6A01G352600 chr7A 87.500 56 7 0 2255 2310 49989403 49989348 7.980000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G352600 chr6A 584956001 584959443 3442 True 6359 6359 100.000 1 3443 1 chr6A.!!$R2 3442
1 TraesCS6A01G352600 chr6A 584993843 584996058 2215 False 2374 2374 86.156 255 2463 1 chr6A.!!$F1 2208
2 TraesCS6A01G352600 chr6D 436763851 436767019 3168 True 3989 3989 89.459 259 3443 1 chr6D.!!$R1 3184
3 TraesCS6A01G352600 chr6B 660258249 660260443 2194 False 2449 2449 86.974 279 2463 1 chr6B.!!$F1 2184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.110486 AGACAAAGATGGGCCGTTGT 59.890 50.0 12.69 12.69 40.45 3.32 F
734 760 0.179029 AATACATACCCTGGCGTGGC 60.179 55.0 0.00 0.00 0.00 5.01 F
1812 1841 0.103208 CTACCGGCTTGCTCTACCTG 59.897 60.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1216 1242 0.035152 TCAATGGACGGAGCTTGCAT 60.035 50.0 0.0 0.0 0.00 3.96 R
2076 2105 0.036010 CCACTGTAGGACCTTGCCTG 60.036 60.0 0.0 0.0 39.08 4.85 R
2655 2687 0.464036 TAGGATCACATGCACCGACC 59.536 55.0 0.0 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 8.617290 AAATCCGATGGTATATACTTTGTTCC 57.383 34.615 12.54 0.00 0.00 3.62
31 32 6.734502 TCCGATGGTATATACTTTGTTCCA 57.265 37.500 12.54 0.96 0.00 3.53
32 33 6.755206 TCCGATGGTATATACTTTGTTCCAG 58.245 40.000 12.54 0.00 0.00 3.86
33 34 6.325545 TCCGATGGTATATACTTTGTTCCAGT 59.674 38.462 12.54 0.00 0.00 4.00
34 35 6.990349 CCGATGGTATATACTTTGTTCCAGTT 59.010 38.462 12.54 0.00 0.00 3.16
35 36 7.042051 CCGATGGTATATACTTTGTTCCAGTTG 60.042 40.741 12.54 0.00 0.00 3.16
36 37 7.709182 CGATGGTATATACTTTGTTCCAGTTGA 59.291 37.037 12.54 0.00 0.00 3.18
37 38 8.732746 ATGGTATATACTTTGTTCCAGTTGAC 57.267 34.615 12.54 0.00 0.00 3.18
38 39 7.107542 TGGTATATACTTTGTTCCAGTTGACC 58.892 38.462 12.54 0.00 0.00 4.02
39 40 6.541278 GGTATATACTTTGTTCCAGTTGACCC 59.459 42.308 12.54 0.00 0.00 4.46
40 41 2.818751 ACTTTGTTCCAGTTGACCCA 57.181 45.000 0.00 0.00 0.00 4.51
41 42 2.654863 ACTTTGTTCCAGTTGACCCAG 58.345 47.619 0.00 0.00 0.00 4.45
42 43 2.025321 ACTTTGTTCCAGTTGACCCAGT 60.025 45.455 0.00 0.00 0.00 4.00
43 44 2.818751 TTGTTCCAGTTGACCCAGTT 57.181 45.000 0.00 0.00 0.00 3.16
44 45 2.818751 TGTTCCAGTTGACCCAGTTT 57.181 45.000 0.00 0.00 0.00 2.66
45 46 3.935818 TGTTCCAGTTGACCCAGTTTA 57.064 42.857 0.00 0.00 0.00 2.01
46 47 3.547746 TGTTCCAGTTGACCCAGTTTAC 58.452 45.455 0.00 0.00 0.00 2.01
47 48 3.054287 TGTTCCAGTTGACCCAGTTTACA 60.054 43.478 0.00 0.00 0.00 2.41
48 49 4.142038 GTTCCAGTTGACCCAGTTTACAT 58.858 43.478 0.00 0.00 0.00 2.29
49 50 3.750371 TCCAGTTGACCCAGTTTACATG 58.250 45.455 0.00 0.00 0.00 3.21
50 51 3.392947 TCCAGTTGACCCAGTTTACATGA 59.607 43.478 0.00 0.00 0.00 3.07
51 52 3.502211 CCAGTTGACCCAGTTTACATGAC 59.498 47.826 0.00 0.00 0.00 3.06
52 53 4.133820 CAGTTGACCCAGTTTACATGACA 58.866 43.478 0.00 0.00 0.00 3.58
53 54 4.214119 CAGTTGACCCAGTTTACATGACAG 59.786 45.833 0.00 0.00 0.00 3.51
54 55 4.102524 AGTTGACCCAGTTTACATGACAGA 59.897 41.667 0.00 0.00 0.00 3.41
55 56 4.698201 TGACCCAGTTTACATGACAGAA 57.302 40.909 0.00 0.00 0.00 3.02
56 57 4.641396 TGACCCAGTTTACATGACAGAAG 58.359 43.478 0.00 0.00 0.00 2.85
57 58 4.346709 TGACCCAGTTTACATGACAGAAGA 59.653 41.667 0.00 0.00 0.00 2.87
58 59 4.642429 ACCCAGTTTACATGACAGAAGAC 58.358 43.478 0.00 0.00 0.00 3.01
59 60 4.348168 ACCCAGTTTACATGACAGAAGACT 59.652 41.667 0.00 0.00 0.00 3.24
60 61 5.542635 ACCCAGTTTACATGACAGAAGACTA 59.457 40.000 0.00 0.00 0.00 2.59
61 62 5.869888 CCCAGTTTACATGACAGAAGACTAC 59.130 44.000 0.00 0.00 0.00 2.73
62 63 6.455647 CCAGTTTACATGACAGAAGACTACA 58.544 40.000 0.00 0.00 0.00 2.74
63 64 6.929049 CCAGTTTACATGACAGAAGACTACAA 59.071 38.462 0.00 0.00 0.00 2.41
64 65 7.441157 CCAGTTTACATGACAGAAGACTACAAA 59.559 37.037 0.00 0.00 0.00 2.83
65 66 8.826710 CAGTTTACATGACAGAAGACTACAAAA 58.173 33.333 0.00 0.00 0.00 2.44
66 67 9.391006 AGTTTACATGACAGAAGACTACAAAAA 57.609 29.630 0.00 0.00 0.00 1.94
67 68 9.651718 GTTTACATGACAGAAGACTACAAAAAG 57.348 33.333 0.00 0.00 0.00 2.27
68 69 6.867662 ACATGACAGAAGACTACAAAAAGG 57.132 37.500 0.00 0.00 0.00 3.11
69 70 6.357367 ACATGACAGAAGACTACAAAAAGGT 58.643 36.000 0.00 0.00 0.00 3.50
70 71 6.828785 ACATGACAGAAGACTACAAAAAGGTT 59.171 34.615 0.00 0.00 0.00 3.50
71 72 6.920569 TGACAGAAGACTACAAAAAGGTTC 57.079 37.500 0.00 0.00 0.00 3.62
72 73 6.411376 TGACAGAAGACTACAAAAAGGTTCA 58.589 36.000 0.00 0.00 0.00 3.18
73 74 6.315393 TGACAGAAGACTACAAAAAGGTTCAC 59.685 38.462 0.00 0.00 0.00 3.18
74 75 6.177610 ACAGAAGACTACAAAAAGGTTCACA 58.822 36.000 0.00 0.00 0.00 3.58
75 76 6.316390 ACAGAAGACTACAAAAAGGTTCACAG 59.684 38.462 0.00 0.00 0.00 3.66
76 77 6.538742 CAGAAGACTACAAAAAGGTTCACAGA 59.461 38.462 0.00 0.00 0.00 3.41
77 78 6.763610 AGAAGACTACAAAAAGGTTCACAGAG 59.236 38.462 0.00 0.00 0.00 3.35
78 79 6.235231 AGACTACAAAAAGGTTCACAGAGA 57.765 37.500 0.00 0.00 0.00 3.10
79 80 6.831976 AGACTACAAAAAGGTTCACAGAGAT 58.168 36.000 0.00 0.00 0.00 2.75
80 81 6.708054 AGACTACAAAAAGGTTCACAGAGATG 59.292 38.462 0.00 0.00 0.00 2.90
81 82 4.574599 ACAAAAAGGTTCACAGAGATGC 57.425 40.909 0.00 0.00 0.00 3.91
82 83 4.210331 ACAAAAAGGTTCACAGAGATGCT 58.790 39.130 0.00 0.00 0.00 3.79
83 84 4.276926 ACAAAAAGGTTCACAGAGATGCTC 59.723 41.667 0.00 0.00 0.00 4.26
84 85 4.363991 AAAAGGTTCACAGAGATGCTCT 57.636 40.909 0.00 0.00 42.11 4.09
91 92 4.928398 AGAGATGCTCTGCCGTTG 57.072 55.556 0.00 0.00 39.62 4.10
92 93 1.449246 AGAGATGCTCTGCCGTTGC 60.449 57.895 0.00 0.00 39.62 4.17
93 94 1.449246 GAGATGCTCTGCCGTTGCT 60.449 57.895 0.00 0.00 38.71 3.91
94 95 1.703438 GAGATGCTCTGCCGTTGCTG 61.703 60.000 0.00 0.00 38.71 4.41
95 96 3.392595 GATGCTCTGCCGTTGCTGC 62.393 63.158 0.00 0.00 38.71 5.25
96 97 4.933563 TGCTCTGCCGTTGCTGCA 62.934 61.111 0.00 0.00 38.71 4.41
97 98 3.663176 GCTCTGCCGTTGCTGCAA 61.663 61.111 11.69 11.69 38.46 4.08
98 99 2.253452 CTCTGCCGTTGCTGCAAC 59.747 61.111 30.35 30.35 40.54 4.17
118 119 7.698836 GCAACGGCATATCATTTCTAAAATT 57.301 32.000 0.00 0.00 40.72 1.82
119 120 8.130307 GCAACGGCATATCATTTCTAAAATTT 57.870 30.769 0.00 0.00 40.72 1.82
120 121 8.057742 GCAACGGCATATCATTTCTAAAATTTG 58.942 33.333 0.00 0.00 40.72 2.32
121 122 9.086336 CAACGGCATATCATTTCTAAAATTTGT 57.914 29.630 0.00 0.00 0.00 2.83
122 123 8.856490 ACGGCATATCATTTCTAAAATTTGTC 57.144 30.769 0.00 0.00 0.00 3.18
123 124 8.686334 ACGGCATATCATTTCTAAAATTTGTCT 58.314 29.630 0.00 0.00 0.00 3.41
124 125 8.961092 CGGCATATCATTTCTAAAATTTGTCTG 58.039 33.333 0.00 0.00 0.00 3.51
125 126 9.252962 GGCATATCATTTCTAAAATTTGTCTGG 57.747 33.333 0.00 0.00 0.00 3.86
129 130 7.831691 TCATTTCTAAAATTTGTCTGGACCA 57.168 32.000 0.00 0.00 0.00 4.02
130 131 8.243961 TCATTTCTAAAATTTGTCTGGACCAA 57.756 30.769 0.00 0.00 0.00 3.67
131 132 8.700051 TCATTTCTAAAATTTGTCTGGACCAAA 58.300 29.630 0.00 0.00 0.00 3.28
132 133 8.981647 CATTTCTAAAATTTGTCTGGACCAAAG 58.018 33.333 0.00 0.00 0.00 2.77
133 134 6.084326 TCTAAAATTTGTCTGGACCAAAGC 57.916 37.500 0.00 0.00 0.00 3.51
134 135 5.833131 TCTAAAATTTGTCTGGACCAAAGCT 59.167 36.000 0.00 0.00 0.00 3.74
135 136 4.590850 AAATTTGTCTGGACCAAAGCTC 57.409 40.909 0.00 0.00 0.00 4.09
136 137 3.515602 ATTTGTCTGGACCAAAGCTCT 57.484 42.857 0.00 0.00 0.00 4.09
137 138 2.260844 TTGTCTGGACCAAAGCTCTG 57.739 50.000 0.00 0.00 0.00 3.35
138 139 1.131638 TGTCTGGACCAAAGCTCTGT 58.868 50.000 0.00 0.00 0.00 3.41
139 140 1.490490 TGTCTGGACCAAAGCTCTGTT 59.510 47.619 0.00 0.00 0.00 3.16
140 141 2.147150 GTCTGGACCAAAGCTCTGTTC 58.853 52.381 0.00 0.00 0.00 3.18
141 142 2.050144 TCTGGACCAAAGCTCTGTTCT 58.950 47.619 0.00 0.00 0.00 3.01
142 143 3.006967 GTCTGGACCAAAGCTCTGTTCTA 59.993 47.826 0.00 0.00 0.00 2.10
143 144 3.840666 TCTGGACCAAAGCTCTGTTCTAT 59.159 43.478 0.00 0.00 0.00 1.98
144 145 4.287067 TCTGGACCAAAGCTCTGTTCTATT 59.713 41.667 0.00 0.00 0.00 1.73
145 146 4.326826 TGGACCAAAGCTCTGTTCTATTG 58.673 43.478 0.00 0.00 0.00 1.90
146 147 3.691609 GGACCAAAGCTCTGTTCTATTGG 59.308 47.826 7.79 7.79 42.29 3.16
147 148 4.373156 ACCAAAGCTCTGTTCTATTGGT 57.627 40.909 8.97 8.97 44.13 3.67
148 149 4.729868 ACCAAAGCTCTGTTCTATTGGTT 58.270 39.130 8.97 0.00 46.08 3.67
149 150 5.140454 ACCAAAGCTCTGTTCTATTGGTTT 58.860 37.500 8.97 0.00 46.08 3.27
150 151 5.598417 ACCAAAGCTCTGTTCTATTGGTTTT 59.402 36.000 8.97 0.00 46.08 2.43
151 152 6.098266 ACCAAAGCTCTGTTCTATTGGTTTTT 59.902 34.615 8.97 0.00 46.08 1.94
152 153 7.286775 ACCAAAGCTCTGTTCTATTGGTTTTTA 59.713 33.333 8.97 0.00 46.08 1.52
153 154 8.141268 CCAAAGCTCTGTTCTATTGGTTTTTAA 58.859 33.333 2.02 0.00 34.12 1.52
154 155 9.696917 CAAAGCTCTGTTCTATTGGTTTTTAAT 57.303 29.630 0.00 0.00 0.00 1.40
169 170 8.840833 TGGTTTTTAATAAATTTCCAGGAAGC 57.159 30.769 1.07 0.00 0.00 3.86
170 171 8.432805 TGGTTTTTAATAAATTTCCAGGAAGCA 58.567 29.630 1.07 0.00 0.00 3.91
171 172 8.717821 GGTTTTTAATAAATTTCCAGGAAGCAC 58.282 33.333 1.07 0.00 0.00 4.40
172 173 8.717821 GTTTTTAATAAATTTCCAGGAAGCACC 58.282 33.333 1.07 0.00 39.35 5.01
173 174 4.718940 AATAAATTTCCAGGAAGCACCG 57.281 40.909 1.07 0.00 44.74 4.94
174 175 2.286365 AAATTTCCAGGAAGCACCGA 57.714 45.000 1.07 0.00 44.74 4.69
175 176 2.514458 AATTTCCAGGAAGCACCGAT 57.486 45.000 1.07 0.00 44.74 4.18
176 177 3.644966 AATTTCCAGGAAGCACCGATA 57.355 42.857 1.07 0.00 44.74 2.92
177 178 2.691409 TTTCCAGGAAGCACCGATAG 57.309 50.000 1.07 0.00 44.74 2.08
178 179 1.860641 TTCCAGGAAGCACCGATAGA 58.139 50.000 0.00 0.00 44.74 1.98
179 180 2.088104 TCCAGGAAGCACCGATAGAT 57.912 50.000 0.00 0.00 44.74 1.98
180 181 3.238788 TCCAGGAAGCACCGATAGATA 57.761 47.619 0.00 0.00 44.74 1.98
181 182 3.779444 TCCAGGAAGCACCGATAGATAT 58.221 45.455 0.00 0.00 44.74 1.63
182 183 3.511540 TCCAGGAAGCACCGATAGATATG 59.488 47.826 0.00 0.00 44.74 1.78
183 184 3.511540 CCAGGAAGCACCGATAGATATGA 59.488 47.826 0.00 0.00 44.74 2.15
184 185 4.161189 CCAGGAAGCACCGATAGATATGAT 59.839 45.833 0.00 0.00 44.74 2.45
185 186 5.347342 CAGGAAGCACCGATAGATATGATC 58.653 45.833 0.00 0.00 44.74 2.92
186 187 5.019470 AGGAAGCACCGATAGATATGATCA 58.981 41.667 0.00 0.00 44.74 2.92
187 188 5.105554 AGGAAGCACCGATAGATATGATCAC 60.106 44.000 0.00 0.00 44.74 3.06
188 189 4.727507 AGCACCGATAGATATGATCACC 57.272 45.455 0.00 0.00 39.76 4.02
189 190 4.348486 AGCACCGATAGATATGATCACCT 58.652 43.478 0.00 0.00 39.76 4.00
190 191 4.774726 AGCACCGATAGATATGATCACCTT 59.225 41.667 0.00 0.00 39.76 3.50
191 192 5.952347 AGCACCGATAGATATGATCACCTTA 59.048 40.000 0.00 0.00 39.76 2.69
192 193 6.609212 AGCACCGATAGATATGATCACCTTAT 59.391 38.462 0.00 0.00 39.76 1.73
193 194 7.780271 AGCACCGATAGATATGATCACCTTATA 59.220 37.037 0.00 0.00 39.76 0.98
194 195 8.580720 GCACCGATAGATATGATCACCTTATAT 58.419 37.037 0.00 0.00 39.76 0.86
195 196 9.905171 CACCGATAGATATGATCACCTTATATG 57.095 37.037 0.00 0.00 39.76 1.78
196 197 8.580720 ACCGATAGATATGATCACCTTATATGC 58.419 37.037 0.00 0.00 39.76 3.14
197 198 8.579863 CCGATAGATATGATCACCTTATATGCA 58.420 37.037 0.00 0.00 39.76 3.96
219 220 8.050778 TGCATTAACTACTAAACAAAGATGGG 57.949 34.615 0.00 0.00 0.00 4.00
220 221 6.972901 GCATTAACTACTAAACAAAGATGGGC 59.027 38.462 0.00 0.00 0.00 5.36
221 222 7.480810 CATTAACTACTAAACAAAGATGGGCC 58.519 38.462 0.00 0.00 0.00 5.80
222 223 3.606687 ACTACTAAACAAAGATGGGCCG 58.393 45.455 0.00 0.00 0.00 6.13
223 224 1.173913 ACTAAACAAAGATGGGCCGC 58.826 50.000 0.00 0.00 0.00 6.53
224 225 1.173043 CTAAACAAAGATGGGCCGCA 58.827 50.000 0.00 0.00 0.00 5.69
225 226 1.750778 CTAAACAAAGATGGGCCGCAT 59.249 47.619 6.43 6.43 0.00 4.73
226 227 0.975887 AAACAAAGATGGGCCGCATT 59.024 45.000 7.97 0.00 0.00 3.56
227 228 1.846007 AACAAAGATGGGCCGCATTA 58.154 45.000 7.97 0.00 0.00 1.90
228 229 1.846007 ACAAAGATGGGCCGCATTAA 58.154 45.000 7.97 0.00 0.00 1.40
229 230 1.476488 ACAAAGATGGGCCGCATTAAC 59.524 47.619 7.97 0.00 0.00 2.01
230 231 1.750778 CAAAGATGGGCCGCATTAACT 59.249 47.619 7.97 0.00 0.00 2.24
231 232 2.948979 CAAAGATGGGCCGCATTAACTA 59.051 45.455 7.97 0.00 0.00 2.24
232 233 2.256117 AGATGGGCCGCATTAACTAC 57.744 50.000 7.97 0.00 0.00 2.73
233 234 1.768870 AGATGGGCCGCATTAACTACT 59.231 47.619 7.97 0.00 0.00 2.57
234 235 2.969950 AGATGGGCCGCATTAACTACTA 59.030 45.455 7.97 0.00 0.00 1.82
235 236 2.902705 TGGGCCGCATTAACTACTAG 57.097 50.000 0.00 0.00 0.00 2.57
236 237 2.390696 TGGGCCGCATTAACTACTAGA 58.609 47.619 0.00 0.00 0.00 2.43
237 238 2.101917 TGGGCCGCATTAACTACTAGAC 59.898 50.000 0.00 0.00 0.00 2.59
238 239 2.101917 GGGCCGCATTAACTACTAGACA 59.898 50.000 0.00 0.00 0.00 3.41
239 240 3.431207 GGGCCGCATTAACTACTAGACAA 60.431 47.826 0.00 0.00 0.00 3.18
240 241 4.186159 GGCCGCATTAACTACTAGACAAA 58.814 43.478 0.00 0.00 0.00 2.83
241 242 4.270325 GGCCGCATTAACTACTAGACAAAG 59.730 45.833 0.00 0.00 0.00 2.77
242 243 5.107133 GCCGCATTAACTACTAGACAAAGA 58.893 41.667 0.00 0.00 0.00 2.52
243 244 5.753921 GCCGCATTAACTACTAGACAAAGAT 59.246 40.000 0.00 0.00 0.00 2.40
244 245 6.292381 GCCGCATTAACTACTAGACAAAGATG 60.292 42.308 0.00 0.00 0.00 2.90
245 246 6.201044 CCGCATTAACTACTAGACAAAGATGG 59.799 42.308 0.00 0.00 0.00 3.51
246 247 6.201044 CGCATTAACTACTAGACAAAGATGGG 59.799 42.308 0.00 0.00 0.00 4.00
247 248 6.017852 GCATTAACTACTAGACAAAGATGGGC 60.018 42.308 0.00 0.00 0.00 5.36
248 249 4.489306 AACTACTAGACAAAGATGGGCC 57.511 45.455 0.00 0.00 0.00 5.80
249 250 2.431057 ACTACTAGACAAAGATGGGCCG 59.569 50.000 0.00 0.00 0.00 6.13
250 251 1.276622 ACTAGACAAAGATGGGCCGT 58.723 50.000 0.00 0.00 0.00 5.68
251 252 1.628846 ACTAGACAAAGATGGGCCGTT 59.371 47.619 0.00 0.00 0.00 4.44
252 253 2.009774 CTAGACAAAGATGGGCCGTTG 58.990 52.381 0.00 3.56 0.00 4.10
253 254 0.110486 AGACAAAGATGGGCCGTTGT 59.890 50.000 12.69 12.69 40.45 3.32
254 255 1.349688 AGACAAAGATGGGCCGTTGTA 59.650 47.619 12.78 0.00 38.49 2.41
255 256 1.737793 GACAAAGATGGGCCGTTGTAG 59.262 52.381 12.78 2.13 38.49 2.74
256 257 1.349688 ACAAAGATGGGCCGTTGTAGA 59.650 47.619 11.55 0.00 37.07 2.59
268 269 4.443063 GGCCGTTGTAGAATGTTGAAAAAC 59.557 41.667 0.00 0.00 0.00 2.43
269 270 4.145756 GCCGTTGTAGAATGTTGAAAAACG 59.854 41.667 0.00 0.00 38.97 3.60
271 272 5.267776 CGTTGTAGAATGTTGAAAAACGGT 58.732 37.500 0.00 0.00 36.44 4.83
274 275 7.517101 CGTTGTAGAATGTTGAAAAACGGTAGA 60.517 37.037 0.00 0.00 36.44 2.59
275 276 7.416154 TGTAGAATGTTGAAAAACGGTAGAG 57.584 36.000 0.00 0.00 0.00 2.43
301 302 3.525199 ACTTGGAAGGGAGCTTGATGTAT 59.475 43.478 0.00 0.00 0.00 2.29
302 303 3.565764 TGGAAGGGAGCTTGATGTATG 57.434 47.619 0.00 0.00 0.00 2.39
304 305 3.209410 GGAAGGGAGCTTGATGTATGTG 58.791 50.000 0.00 0.00 0.00 3.21
306 307 3.272574 AGGGAGCTTGATGTATGTGTG 57.727 47.619 0.00 0.00 0.00 3.82
307 308 2.840038 AGGGAGCTTGATGTATGTGTGA 59.160 45.455 0.00 0.00 0.00 3.58
308 309 3.264193 AGGGAGCTTGATGTATGTGTGAA 59.736 43.478 0.00 0.00 0.00 3.18
309 310 4.080129 AGGGAGCTTGATGTATGTGTGAAT 60.080 41.667 0.00 0.00 0.00 2.57
310 311 5.130975 AGGGAGCTTGATGTATGTGTGAATA 59.869 40.000 0.00 0.00 0.00 1.75
311 312 6.000219 GGGAGCTTGATGTATGTGTGAATAT 59.000 40.000 0.00 0.00 0.00 1.28
312 313 7.016563 AGGGAGCTTGATGTATGTGTGAATATA 59.983 37.037 0.00 0.00 0.00 0.86
313 314 7.826252 GGGAGCTTGATGTATGTGTGAATATAT 59.174 37.037 0.00 0.00 0.00 0.86
324 325 7.991084 ATGTGTGAATATATAAGCATGCTGT 57.009 32.000 23.48 15.79 0.00 4.40
326 327 8.900983 TGTGTGAATATATAAGCATGCTGTTA 57.099 30.769 23.48 16.11 0.00 2.41
332 333 9.764870 GAATATATAAGCATGCTGTTATGTGTG 57.235 33.333 23.48 0.00 0.00 3.82
352 360 4.336993 TGTGACCTTAAACGAACTTTGCAT 59.663 37.500 0.00 0.00 0.00 3.96
356 364 3.428534 CCTTAAACGAACTTTGCATTGGC 59.571 43.478 0.00 0.00 41.68 4.52
384 392 0.179100 ACCTCATTCGGTCGAGCATG 60.179 55.000 15.89 11.62 29.14 4.06
385 393 0.179100 CCTCATTCGGTCGAGCATGT 60.179 55.000 15.89 0.00 0.00 3.21
386 394 0.926155 CTCATTCGGTCGAGCATGTG 59.074 55.000 15.89 8.73 0.00 3.21
394 405 2.205074 GGTCGAGCATGTGTATTGAGG 58.795 52.381 10.30 0.00 0.00 3.86
406 417 4.887071 TGTGTATTGAGGAGTTGCAACTTT 59.113 37.500 31.58 22.63 39.88 2.66
407 418 5.359576 TGTGTATTGAGGAGTTGCAACTTTT 59.640 36.000 31.58 22.28 39.88 2.27
438 449 1.591594 GCTTCCGGCGATGATCGAA 60.592 57.895 20.25 2.67 43.74 3.71
444 455 1.800586 CCGGCGATGATCGAAATGAAT 59.199 47.619 20.25 0.00 43.74 2.57
445 456 2.224079 CCGGCGATGATCGAAATGAATT 59.776 45.455 20.25 0.00 43.74 2.17
468 479 1.303282 GCCGTTCCTTCCATCCCTT 59.697 57.895 0.00 0.00 0.00 3.95
478 489 1.018840 TCCATCCCTTCTCCTCCTCA 58.981 55.000 0.00 0.00 0.00 3.86
489 509 1.484240 CTCCTCCTCAGCCTTACCTTG 59.516 57.143 0.00 0.00 0.00 3.61
520 540 2.173519 CCACCTGCAATGACCAATTCT 58.826 47.619 0.00 0.00 0.00 2.40
528 548 5.319453 TGCAATGACCAATTCTTCTTCTCT 58.681 37.500 0.00 0.00 0.00 3.10
534 554 4.734266 ACCAATTCTTCTTCTCTGGCTTT 58.266 39.130 0.00 0.00 0.00 3.51
543 563 5.489792 TCTTCTCTGGCTTTACACAATCT 57.510 39.130 0.00 0.00 0.00 2.40
545 565 7.004555 TCTTCTCTGGCTTTACACAATCTAA 57.995 36.000 0.00 0.00 0.00 2.10
550 570 7.011499 TCTGGCTTTACACAATCTAACCTAA 57.989 36.000 0.00 0.00 0.00 2.69
555 575 6.093633 GCTTTACACAATCTAACCTAACCCTG 59.906 42.308 0.00 0.00 0.00 4.45
558 578 4.788617 ACACAATCTAACCTAACCCTGGAT 59.211 41.667 0.00 0.00 0.00 3.41
561 581 3.502051 TCTAACCTAACCCTGGATGGT 57.498 47.619 0.00 0.00 41.55 3.55
562 582 4.630382 TCTAACCTAACCCTGGATGGTA 57.370 45.455 0.00 0.00 37.76 3.25
566 586 2.225805 ACCTAACCCTGGATGGTAGTGT 60.226 50.000 0.00 0.00 37.76 3.55
624 644 1.336755 GGCACGAACAATGTCAAAGGT 59.663 47.619 0.00 0.00 0.00 3.50
672 695 1.372997 CCGCGATTCATCTACCGGG 60.373 63.158 8.23 0.00 31.52 5.73
692 718 2.749621 GGAAAGTGCAATCATTCTCGGT 59.250 45.455 0.00 0.00 0.00 4.69
700 726 3.534554 CAATCATTCTCGGTCACCATCA 58.465 45.455 0.00 0.00 0.00 3.07
733 759 1.140052 TCAATACATACCCTGGCGTGG 59.860 52.381 0.00 0.00 0.00 4.94
734 760 0.179029 AATACATACCCTGGCGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
744 770 3.211963 GGCGTGGCTGCTAATGGG 61.212 66.667 0.00 0.00 34.52 4.00
745 771 3.211963 GCGTGGCTGCTAATGGGG 61.212 66.667 0.00 0.00 0.00 4.96
759 785 0.712380 ATGGGGTGGCCTTCTTCATT 59.288 50.000 3.32 0.00 0.00 2.57
780 806 1.895131 GCCCCAAGCAAGAATTTCTCA 59.105 47.619 0.00 0.00 42.97 3.27
792 818 1.760192 ATTTCTCAGATGCACTGCCC 58.240 50.000 10.36 0.00 45.38 5.36
793 819 0.674581 TTTCTCAGATGCACTGCCCG 60.675 55.000 10.36 3.80 45.38 6.13
822 848 4.401925 ACTTTGGGATCCTGAAACAGAAG 58.598 43.478 12.58 9.22 32.44 2.85
824 850 3.988976 TGGGATCCTGAAACAGAAGAG 57.011 47.619 12.58 0.00 32.44 2.85
833 859 4.083431 CCTGAAACAGAAGAGCAATGACAG 60.083 45.833 0.00 0.00 32.44 3.51
840 866 2.110901 AGAGCAATGACAGCCTCTTG 57.889 50.000 0.00 0.00 0.00 3.02
843 869 1.630369 AGCAATGACAGCCTCTTGGTA 59.370 47.619 0.00 0.00 35.27 3.25
846 872 3.445096 GCAATGACAGCCTCTTGGTAATT 59.555 43.478 0.00 0.00 35.27 1.40
873 899 0.324460 ACACCTTCTAGGACCCCGAG 60.324 60.000 0.00 0.00 37.67 4.63
874 900 1.381463 ACCTTCTAGGACCCCGAGC 60.381 63.158 0.00 0.00 37.67 5.03
888 914 1.376543 CCGAGCTGCAAGACATCAAT 58.623 50.000 1.02 0.00 34.07 2.57
930 956 9.838339 ATCGACATCAATAGTATTTTCTCCTTT 57.162 29.630 0.00 0.00 0.00 3.11
969 995 4.647399 GGCTTCTATGAAGACTCTAGTGGT 59.353 45.833 11.03 0.00 0.00 4.16
982 1008 2.038557 TCTAGTGGTGCCTTCAAGAACC 59.961 50.000 2.92 2.92 0.00 3.62
1002 1028 0.745486 TGACGCTGAATGCCCAGATG 60.745 55.000 0.00 0.00 38.78 2.90
1008 1034 2.421952 GCTGAATGCCCAGATGGAACTA 60.422 50.000 0.00 0.00 36.29 2.24
1011 1037 3.010027 TGAATGCCCAGATGGAACTACAA 59.990 43.478 0.00 0.00 37.39 2.41
1029 1055 3.686016 ACAATTGTGGGTGGACTATGAC 58.314 45.455 11.07 0.00 0.00 3.06
1068 1094 0.326264 ATGTGACCTTGGCTCCACTC 59.674 55.000 0.00 0.00 0.00 3.51
1074 1100 0.393537 CCTTGGCTCCACTCCATGTC 60.394 60.000 0.00 0.00 32.92 3.06
1085 1111 1.423921 ACTCCATGTCGGAAAACCCTT 59.576 47.619 0.00 0.00 45.75 3.95
1095 1121 2.812613 CGGAAAACCCTTGAAGCCACTA 60.813 50.000 0.00 0.00 0.00 2.74
1101 1127 2.644798 ACCCTTGAAGCCACTATTGTCT 59.355 45.455 0.00 0.00 0.00 3.41
1122 1148 2.906389 TGCAACCTATGACCTCTCAACT 59.094 45.455 0.00 0.00 0.00 3.16
1137 1163 0.249447 CAACTGTGCTCACGGAGACA 60.249 55.000 15.10 5.86 40.06 3.41
1158 1184 7.743749 AGACAGCATATATTGGTTTCTCATCT 58.256 34.615 0.00 0.00 38.20 2.90
1161 1187 8.654997 ACAGCATATATTGGTTTCTCATCTACT 58.345 33.333 0.00 0.00 32.51 2.57
1168 1194 4.569943 TGGTTTCTCATCTACTGCTGAAC 58.430 43.478 0.00 0.00 0.00 3.18
1172 1198 6.311690 GGTTTCTCATCTACTGCTGAACTTAC 59.688 42.308 0.00 0.00 0.00 2.34
1173 1199 6.590234 TTCTCATCTACTGCTGAACTTACA 57.410 37.500 0.00 0.00 0.00 2.41
1179 1205 5.914033 TCTACTGCTGAACTTACAAACACT 58.086 37.500 0.00 0.00 0.00 3.55
1180 1206 7.046292 TCTACTGCTGAACTTACAAACACTA 57.954 36.000 0.00 0.00 0.00 2.74
1206 1232 5.824624 TCATTATGTTCTTGGATGGAGCTTC 59.175 40.000 0.00 0.00 0.00 3.86
1209 1235 0.984230 TTCTTGGATGGAGCTTCGGT 59.016 50.000 0.00 0.00 0.00 4.69
1216 1242 2.158957 GGATGGAGCTTCGGTATGAACA 60.159 50.000 0.00 0.00 31.87 3.18
1217 1243 3.495100 GGATGGAGCTTCGGTATGAACAT 60.495 47.826 0.00 0.00 31.87 2.71
1251 1280 3.618351 CATTGACATCTCCAAGCTTCCT 58.382 45.455 0.00 0.00 0.00 3.36
1255 1284 3.840666 TGACATCTCCAAGCTTCCTAAGT 59.159 43.478 0.00 0.00 0.00 2.24
1261 1290 2.910319 TCCAAGCTTCCTAAGTTGCCTA 59.090 45.455 0.00 0.00 0.00 3.93
1264 1293 3.618690 AGCTTCCTAAGTTGCCTAGTG 57.381 47.619 0.00 0.00 0.00 2.74
1266 1295 3.328050 AGCTTCCTAAGTTGCCTAGTGTT 59.672 43.478 0.00 0.00 0.00 3.32
1267 1296 3.437049 GCTTCCTAAGTTGCCTAGTGTTG 59.563 47.826 0.00 0.00 0.00 3.33
1314 1343 1.002430 GCGATCATCCTCCCAATAGCA 59.998 52.381 0.00 0.00 0.00 3.49
1324 1353 1.108776 CCCAATAGCAACTGCAGCAT 58.891 50.000 15.27 0.00 45.16 3.79
1329 1358 3.984508 ATAGCAACTGCAGCATTGATC 57.015 42.857 15.27 0.30 45.16 2.92
1332 1361 2.159240 AGCAACTGCAGCATTGATCATG 60.159 45.455 15.27 0.00 45.16 3.07
1344 1373 4.313282 CATTGATCATGTCTATCGGCACT 58.687 43.478 0.00 0.00 0.00 4.40
1345 1374 3.650070 TGATCATGTCTATCGGCACTC 57.350 47.619 0.00 0.00 0.00 3.51
1347 1376 3.254411 TGATCATGTCTATCGGCACTCTC 59.746 47.826 0.00 0.00 0.00 3.20
1374 1403 2.562738 TCTGATGGTGCGAAGAAGAAGA 59.437 45.455 0.00 0.00 0.00 2.87
1375 1404 3.006859 TCTGATGGTGCGAAGAAGAAGAA 59.993 43.478 0.00 0.00 0.00 2.52
1419 1448 2.579684 ATTGGGAGAGCGAGTTCGGC 62.580 60.000 3.50 0.00 40.23 5.54
1452 1481 7.413000 CGATTCTCGTACAAGGATTTGTTCAAT 60.413 37.037 0.00 0.00 46.26 2.57
1482 1511 5.707298 TCAAGGATTTAAGAGCAAGAACCTG 59.293 40.000 0.00 0.00 0.00 4.00
1519 1548 0.108019 CGGGGAGGTATACAAAGGGC 59.892 60.000 5.01 0.00 0.00 5.19
1530 1559 1.780503 ACAAAGGGCTGCTTCAGTTT 58.219 45.000 0.00 0.00 33.43 2.66
1566 1595 0.108138 CCGTGAAGAGGATGTCCCAC 60.108 60.000 0.00 0.00 37.41 4.61
1735 1764 6.691818 CCTCGACAAGTACATACACTATCAAC 59.308 42.308 0.00 0.00 0.00 3.18
1812 1841 0.103208 CTACCGGCTTGCTCTACCTG 59.897 60.000 0.00 0.00 0.00 4.00
1839 1868 0.393077 AGTGGGAGAAAGTCGTGGTG 59.607 55.000 0.00 0.00 0.00 4.17
1929 1958 2.607187 CTCGCCCGGTTATATGATCAC 58.393 52.381 0.00 0.00 0.00 3.06
2074 2103 1.255882 TACATGTGGGCAAAAGCCTG 58.744 50.000 9.11 0.00 0.00 4.85
2076 2105 0.037975 CATGTGGGCAAAAGCCTGTC 60.038 55.000 6.45 0.00 0.00 3.51
2078 2107 1.108727 TGTGGGCAAAAGCCTGTCAG 61.109 55.000 6.45 0.00 0.00 3.51
2088 2117 3.488423 CCTGTCAGGCAAGGTCCT 58.512 61.111 5.79 0.00 36.78 3.85
2089 2118 2.683916 CCTGTCAGGCAAGGTCCTA 58.316 57.895 5.79 0.00 33.95 2.94
2093 2122 0.977395 GTCAGGCAAGGTCCTACAGT 59.023 55.000 0.00 0.00 33.95 3.55
2096 2125 0.178903 AGGCAAGGTCCTACAGTGGA 60.179 55.000 0.00 0.00 33.95 4.02
2100 2129 2.552743 GCAAGGTCCTACAGTGGAAAAC 59.447 50.000 0.00 0.00 37.93 2.43
2269 2298 2.629050 TTCGAGGCCTAGCATGCGAC 62.629 60.000 4.42 0.00 0.00 5.19
2311 2340 1.000993 GAGACCCCTCTGCCAGAGA 59.999 63.158 23.24 0.00 45.07 3.10
2315 2344 0.980231 ACCCCTCTGCCAGAGATGAC 60.980 60.000 23.24 0.00 45.07 3.06
2369 2398 2.743928 GCAGGACAGCGGGTTCAG 60.744 66.667 0.00 0.00 0.00 3.02
2373 2402 2.280797 GACAGCGGGTTCAGCACA 60.281 61.111 0.00 0.00 37.01 4.57
2376 2405 2.045926 AGCGGGTTCAGCACATCC 60.046 61.111 0.00 0.00 37.01 3.51
2388 2417 2.604914 CAGCACATCCGTCATGTCTTAC 59.395 50.000 0.00 0.00 44.60 2.34
2469 2498 3.961477 TGGTGTTTGTGATTGTTCTCG 57.039 42.857 0.00 0.00 0.00 4.04
2473 2502 4.035208 GGTGTTTGTGATTGTTCTCGTCTT 59.965 41.667 0.00 0.00 0.00 3.01
2479 2508 3.997021 GTGATTGTTCTCGTCTTGGATGT 59.003 43.478 0.00 0.00 0.00 3.06
2494 2523 4.712051 TGGATGTTCTAGCTTGGCATAT 57.288 40.909 0.00 0.00 0.00 1.78
2532 2561 1.133216 TGCTCACGTATCTCTGCACTC 59.867 52.381 0.00 0.00 0.00 3.51
2582 2614 6.870965 CCGCTAGAGATGAATTTACTATTGCT 59.129 38.462 0.00 0.00 0.00 3.91
2610 2642 7.083875 TGTTTGTTTTAGAGGAACTGTCTTG 57.916 36.000 0.00 0.00 41.55 3.02
2625 2657 5.906073 ACTGTCTTGTTTTGAGGAATTTGG 58.094 37.500 0.00 0.00 0.00 3.28
2637 2669 4.016292 TGAGGAATTTGGGAGGAATCCATT 60.016 41.667 0.61 0.00 33.82 3.16
2657 2689 5.920903 CATTCTTATGGAAAATGCATGGGT 58.079 37.500 0.00 0.00 37.49 4.51
2658 2690 5.596836 TTCTTATGGAAAATGCATGGGTC 57.403 39.130 0.00 0.00 29.08 4.46
2659 2691 3.631686 TCTTATGGAAAATGCATGGGTCG 59.368 43.478 0.00 0.00 29.08 4.79
2660 2692 1.113788 ATGGAAAATGCATGGGTCGG 58.886 50.000 0.00 0.00 0.00 4.79
2663 2695 0.458370 GAAAATGCATGGGTCGGTGC 60.458 55.000 0.00 0.00 41.61 5.01
2666 2698 2.751036 TGCATGGGTCGGTGCATG 60.751 61.111 0.00 0.00 45.60 4.06
2667 2699 2.751436 GCATGGGTCGGTGCATGT 60.751 61.111 0.00 0.00 40.94 3.21
2668 2700 3.055080 GCATGGGTCGGTGCATGTG 62.055 63.158 0.00 0.00 40.94 3.21
2669 2701 1.377072 CATGGGTCGGTGCATGTGA 60.377 57.895 0.00 0.00 0.00 3.58
2670 2702 0.749091 CATGGGTCGGTGCATGTGAT 60.749 55.000 0.00 0.00 0.00 3.06
2671 2703 0.464373 ATGGGTCGGTGCATGTGATC 60.464 55.000 0.00 0.00 0.00 2.92
2672 2704 1.819632 GGGTCGGTGCATGTGATCC 60.820 63.158 0.00 0.00 0.00 3.36
2673 2705 1.221840 GGTCGGTGCATGTGATCCT 59.778 57.895 0.00 0.00 0.00 3.24
2674 2706 0.464036 GGTCGGTGCATGTGATCCTA 59.536 55.000 0.00 0.00 0.00 2.94
2675 2707 1.070758 GGTCGGTGCATGTGATCCTAT 59.929 52.381 0.00 0.00 0.00 2.57
2676 2708 2.485479 GGTCGGTGCATGTGATCCTATT 60.485 50.000 0.00 0.00 0.00 1.73
2677 2709 3.244078 GGTCGGTGCATGTGATCCTATTA 60.244 47.826 0.00 0.00 0.00 0.98
3085 3118 9.546909 TTTTATTACGAGTGTAGACGTTTAGAG 57.453 33.333 0.00 0.00 42.61 2.43
3086 3119 6.974932 ATTACGAGTGTAGACGTTTAGAGA 57.025 37.500 0.00 0.00 42.61 3.10
3087 3120 6.785488 TTACGAGTGTAGACGTTTAGAGAA 57.215 37.500 0.00 0.00 42.61 2.87
3088 3121 5.679734 ACGAGTGTAGACGTTTAGAGAAA 57.320 39.130 0.00 0.00 39.75 2.52
3089 3122 6.064846 ACGAGTGTAGACGTTTAGAGAAAA 57.935 37.500 0.00 0.00 39.75 2.29
3090 3123 6.675987 ACGAGTGTAGACGTTTAGAGAAAAT 58.324 36.000 0.00 0.00 39.75 1.82
3091 3124 6.581542 ACGAGTGTAGACGTTTAGAGAAAATG 59.418 38.462 0.00 0.00 39.75 2.32
3093 3126 7.409449 CGAGTGTAGACGTTTAGAGAAAATGTG 60.409 40.741 0.00 0.00 45.34 3.21
3094 3127 7.431249 AGTGTAGACGTTTAGAGAAAATGTGA 58.569 34.615 0.00 0.00 45.34 3.58
3095 3128 7.924412 AGTGTAGACGTTTAGAGAAAATGTGAA 59.076 33.333 0.00 0.00 45.34 3.18
3096 3129 8.002665 GTGTAGACGTTTAGAGAAAATGTGAAC 58.997 37.037 0.00 0.46 45.34 3.18
3097 3130 7.924412 TGTAGACGTTTAGAGAAAATGTGAACT 59.076 33.333 0.00 0.00 45.34 3.01
3312 3346 0.676782 AAATCACTACCAGGTGCGGC 60.677 55.000 0.76 0.00 37.16 6.53
3339 3373 4.455606 GGGGAAATCATCTTCTCAATCGT 58.544 43.478 0.00 0.00 0.00 3.73
3340 3374 5.454755 GGGGGAAATCATCTTCTCAATCGTA 60.455 44.000 0.00 0.00 0.00 3.43
3354 3388 3.379057 TCAATCGTAATGACGGTCAGCTA 59.621 43.478 16.84 7.69 43.14 3.32
3373 3407 0.744281 AACGGAAGTGGCAACTTTGG 59.256 50.000 8.18 5.83 46.84 3.28
3379 3413 3.572255 GGAAGTGGCAACTTTGGACATAA 59.428 43.478 8.18 0.00 46.84 1.90
3380 3414 4.546570 GAAGTGGCAACTTTGGACATAAC 58.453 43.478 8.18 0.00 46.84 1.89
3398 3432 5.700832 ACATAACGCAGAATTTCAGAGTGAA 59.299 36.000 0.00 0.00 34.03 3.18
3411 3445 2.127758 GTGAAGCGTTTCGGTGCG 60.128 61.111 7.53 0.00 35.43 5.34
3433 3467 1.601171 GCTCATCTGCACCTGGTCT 59.399 57.895 0.00 0.00 0.00 3.85
3434 3468 0.826715 GCTCATCTGCACCTGGTCTA 59.173 55.000 0.00 0.00 0.00 2.59
3438 3472 3.173151 TCATCTGCACCTGGTCTAGAAA 58.827 45.455 12.11 3.53 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.063615 GGAACAAAGTATATACCATCGGATTTT 57.936 33.333 9.32 0.00 0.00 1.82
5 6 8.215050 TGGAACAAAGTATATACCATCGGATTT 58.785 33.333 9.32 0.00 31.92 2.17
6 7 7.741785 TGGAACAAAGTATATACCATCGGATT 58.258 34.615 9.32 0.00 31.92 3.01
7 8 7.016268 ACTGGAACAAAGTATATACCATCGGAT 59.984 37.037 9.32 0.00 38.70 4.18
8 9 6.325545 ACTGGAACAAAGTATATACCATCGGA 59.674 38.462 9.32 0.00 38.70 4.55
9 10 6.522054 ACTGGAACAAAGTATATACCATCGG 58.478 40.000 9.32 0.00 38.70 4.18
10 11 7.709182 TCAACTGGAACAAAGTATATACCATCG 59.291 37.037 9.32 0.00 38.70 3.84
11 12 8.827677 GTCAACTGGAACAAAGTATATACCATC 58.172 37.037 9.32 1.74 38.70 3.51
12 13 7.773690 GGTCAACTGGAACAAAGTATATACCAT 59.226 37.037 9.32 0.00 38.70 3.55
13 14 7.107542 GGTCAACTGGAACAAAGTATATACCA 58.892 38.462 9.32 0.00 38.70 3.25
14 15 6.541278 GGGTCAACTGGAACAAAGTATATACC 59.459 42.308 9.32 0.00 38.70 2.73
15 16 7.107542 TGGGTCAACTGGAACAAAGTATATAC 58.892 38.462 4.60 4.60 38.70 1.47
16 17 7.037873 ACTGGGTCAACTGGAACAAAGTATATA 60.038 37.037 0.00 0.00 38.70 0.86
17 18 6.134535 TGGGTCAACTGGAACAAAGTATAT 57.865 37.500 0.00 0.00 38.70 0.86
18 19 5.072600 ACTGGGTCAACTGGAACAAAGTATA 59.927 40.000 0.00 0.00 38.70 1.47
19 20 4.141251 ACTGGGTCAACTGGAACAAAGTAT 60.141 41.667 0.00 0.00 38.70 2.12
20 21 3.201266 ACTGGGTCAACTGGAACAAAGTA 59.799 43.478 0.00 0.00 38.70 2.24
21 22 2.025321 ACTGGGTCAACTGGAACAAAGT 60.025 45.455 0.00 0.00 38.70 2.66
22 23 2.654863 ACTGGGTCAACTGGAACAAAG 58.345 47.619 0.00 0.00 38.70 2.77
23 24 2.818751 ACTGGGTCAACTGGAACAAA 57.181 45.000 0.00 0.00 38.70 2.83
24 25 2.818751 AACTGGGTCAACTGGAACAA 57.181 45.000 0.00 0.00 38.70 2.83
25 26 2.818751 AAACTGGGTCAACTGGAACA 57.181 45.000 0.00 0.00 33.68 3.18
26 27 3.547746 TGTAAACTGGGTCAACTGGAAC 58.452 45.455 0.00 0.00 0.00 3.62
27 28 3.935818 TGTAAACTGGGTCAACTGGAA 57.064 42.857 0.00 0.00 0.00 3.53
28 29 3.392947 TCATGTAAACTGGGTCAACTGGA 59.607 43.478 0.00 0.00 0.00 3.86
29 30 3.502211 GTCATGTAAACTGGGTCAACTGG 59.498 47.826 0.00 0.00 0.00 4.00
30 31 4.133820 TGTCATGTAAACTGGGTCAACTG 58.866 43.478 0.00 0.00 0.00 3.16
31 32 4.102524 TCTGTCATGTAAACTGGGTCAACT 59.897 41.667 0.00 0.00 0.00 3.16
32 33 4.385825 TCTGTCATGTAAACTGGGTCAAC 58.614 43.478 0.00 0.00 0.00 3.18
33 34 4.698201 TCTGTCATGTAAACTGGGTCAA 57.302 40.909 0.00 0.00 0.00 3.18
34 35 4.346709 TCTTCTGTCATGTAAACTGGGTCA 59.653 41.667 0.00 0.00 0.00 4.02
35 36 4.691216 GTCTTCTGTCATGTAAACTGGGTC 59.309 45.833 0.00 0.00 0.00 4.46
36 37 4.348168 AGTCTTCTGTCATGTAAACTGGGT 59.652 41.667 0.00 0.00 0.00 4.51
37 38 4.899502 AGTCTTCTGTCATGTAAACTGGG 58.100 43.478 0.00 0.00 0.00 4.45
38 39 6.455647 TGTAGTCTTCTGTCATGTAAACTGG 58.544 40.000 0.00 0.00 0.00 4.00
39 40 7.946655 TTGTAGTCTTCTGTCATGTAAACTG 57.053 36.000 0.00 0.00 0.00 3.16
40 41 8.958119 TTTTGTAGTCTTCTGTCATGTAAACT 57.042 30.769 0.00 0.00 0.00 2.66
41 42 9.651718 CTTTTTGTAGTCTTCTGTCATGTAAAC 57.348 33.333 0.00 0.00 0.00 2.01
42 43 8.836413 CCTTTTTGTAGTCTTCTGTCATGTAAA 58.164 33.333 0.00 0.00 0.00 2.01
43 44 7.990886 ACCTTTTTGTAGTCTTCTGTCATGTAA 59.009 33.333 0.00 0.00 0.00 2.41
44 45 7.506114 ACCTTTTTGTAGTCTTCTGTCATGTA 58.494 34.615 0.00 0.00 0.00 2.29
45 46 6.357367 ACCTTTTTGTAGTCTTCTGTCATGT 58.643 36.000 0.00 0.00 0.00 3.21
46 47 6.867662 ACCTTTTTGTAGTCTTCTGTCATG 57.132 37.500 0.00 0.00 0.00 3.07
47 48 7.012421 GTGAACCTTTTTGTAGTCTTCTGTCAT 59.988 37.037 0.00 0.00 0.00 3.06
48 49 6.315393 GTGAACCTTTTTGTAGTCTTCTGTCA 59.685 38.462 0.00 0.00 0.00 3.58
49 50 6.315393 TGTGAACCTTTTTGTAGTCTTCTGTC 59.685 38.462 0.00 0.00 0.00 3.51
50 51 6.177610 TGTGAACCTTTTTGTAGTCTTCTGT 58.822 36.000 0.00 0.00 0.00 3.41
51 52 6.538742 TCTGTGAACCTTTTTGTAGTCTTCTG 59.461 38.462 0.00 0.00 0.00 3.02
52 53 6.650120 TCTGTGAACCTTTTTGTAGTCTTCT 58.350 36.000 0.00 0.00 0.00 2.85
53 54 6.761714 TCTCTGTGAACCTTTTTGTAGTCTTC 59.238 38.462 0.00 0.00 0.00 2.87
54 55 6.650120 TCTCTGTGAACCTTTTTGTAGTCTT 58.350 36.000 0.00 0.00 0.00 3.01
55 56 6.235231 TCTCTGTGAACCTTTTTGTAGTCT 57.765 37.500 0.00 0.00 0.00 3.24
56 57 6.566753 GCATCTCTGTGAACCTTTTTGTAGTC 60.567 42.308 0.00 0.00 0.00 2.59
57 58 5.239525 GCATCTCTGTGAACCTTTTTGTAGT 59.760 40.000 0.00 0.00 0.00 2.73
58 59 5.471456 AGCATCTCTGTGAACCTTTTTGTAG 59.529 40.000 0.00 0.00 0.00 2.74
59 60 5.376625 AGCATCTCTGTGAACCTTTTTGTA 58.623 37.500 0.00 0.00 0.00 2.41
60 61 4.210331 AGCATCTCTGTGAACCTTTTTGT 58.790 39.130 0.00 0.00 0.00 2.83
61 62 4.791974 GAGCATCTCTGTGAACCTTTTTG 58.208 43.478 0.00 0.00 0.00 2.44
77 78 2.789917 CAGCAACGGCAGAGCATC 59.210 61.111 8.39 0.00 44.61 3.91
78 79 3.437795 GCAGCAACGGCAGAGCAT 61.438 61.111 8.39 0.00 44.61 3.79
79 80 4.933563 TGCAGCAACGGCAGAGCA 62.934 61.111 0.00 0.00 44.61 4.26
80 81 3.663176 TTGCAGCAACGGCAGAGC 61.663 61.111 2.83 0.00 43.05 4.09
81 82 2.253452 GTTGCAGCAACGGCAGAG 59.747 61.111 22.28 0.00 43.05 3.35
94 95 7.698836 AATTTTAGAAATGATATGCCGTTGC 57.301 32.000 0.00 0.00 38.26 4.17
95 96 9.086336 ACAAATTTTAGAAATGATATGCCGTTG 57.914 29.630 0.00 0.00 0.00 4.10
96 97 9.301153 GACAAATTTTAGAAATGATATGCCGTT 57.699 29.630 0.00 0.00 0.00 4.44
97 98 8.686334 AGACAAATTTTAGAAATGATATGCCGT 58.314 29.630 0.00 0.00 0.00 5.68
98 99 8.961092 CAGACAAATTTTAGAAATGATATGCCG 58.039 33.333 0.00 0.00 0.00 5.69
99 100 9.252962 CCAGACAAATTTTAGAAATGATATGCC 57.747 33.333 0.00 0.00 0.00 4.40
103 104 9.527157 TGGTCCAGACAAATTTTAGAAATGATA 57.473 29.630 0.00 0.00 0.00 2.15
104 105 8.421249 TGGTCCAGACAAATTTTAGAAATGAT 57.579 30.769 0.00 0.00 0.00 2.45
105 106 7.831691 TGGTCCAGACAAATTTTAGAAATGA 57.168 32.000 0.00 0.00 0.00 2.57
106 107 8.885494 TTTGGTCCAGACAAATTTTAGAAATG 57.115 30.769 0.00 0.00 33.26 2.32
107 108 7.657354 GCTTTGGTCCAGACAAATTTTAGAAAT 59.343 33.333 0.00 0.00 37.22 2.17
108 109 6.983890 GCTTTGGTCCAGACAAATTTTAGAAA 59.016 34.615 0.00 0.00 37.22 2.52
109 110 6.323739 AGCTTTGGTCCAGACAAATTTTAGAA 59.676 34.615 0.00 0.00 37.22 2.10
110 111 5.833131 AGCTTTGGTCCAGACAAATTTTAGA 59.167 36.000 0.00 0.00 37.22 2.10
111 112 6.015940 AGAGCTTTGGTCCAGACAAATTTTAG 60.016 38.462 0.00 0.00 37.22 1.85
112 113 5.833131 AGAGCTTTGGTCCAGACAAATTTTA 59.167 36.000 0.00 0.00 37.22 1.52
113 114 4.651045 AGAGCTTTGGTCCAGACAAATTTT 59.349 37.500 0.00 0.00 37.22 1.82
114 115 4.038402 CAGAGCTTTGGTCCAGACAAATTT 59.962 41.667 0.00 0.00 37.22 1.82
115 116 3.571401 CAGAGCTTTGGTCCAGACAAATT 59.429 43.478 0.00 0.00 37.22 1.82
116 117 3.152341 CAGAGCTTTGGTCCAGACAAAT 58.848 45.455 0.00 0.00 37.22 2.32
117 118 2.092429 ACAGAGCTTTGGTCCAGACAAA 60.092 45.455 9.34 0.00 36.49 2.83
118 119 1.490490 ACAGAGCTTTGGTCCAGACAA 59.510 47.619 9.34 0.00 0.00 3.18
119 120 1.131638 ACAGAGCTTTGGTCCAGACA 58.868 50.000 9.34 0.00 0.00 3.41
120 121 2.147150 GAACAGAGCTTTGGTCCAGAC 58.853 52.381 11.20 0.00 0.00 3.51
121 122 2.050144 AGAACAGAGCTTTGGTCCAGA 58.950 47.619 18.13 0.00 35.33 3.86
122 123 2.557920 AGAACAGAGCTTTGGTCCAG 57.442 50.000 18.13 0.00 35.33 3.86
123 124 4.326826 CAATAGAACAGAGCTTTGGTCCA 58.673 43.478 18.13 5.73 35.33 4.02
124 125 3.691609 CCAATAGAACAGAGCTTTGGTCC 59.308 47.826 18.13 1.51 35.33 4.46
125 126 4.327680 ACCAATAGAACAGAGCTTTGGTC 58.672 43.478 14.30 14.30 42.24 4.02
126 127 4.373156 ACCAATAGAACAGAGCTTTGGT 57.627 40.909 9.34 9.14 41.38 3.67
127 128 5.712152 AAACCAATAGAACAGAGCTTTGG 57.288 39.130 9.34 8.49 39.55 3.28
128 129 9.696917 ATTAAAAACCAATAGAACAGAGCTTTG 57.303 29.630 2.03 2.03 0.00 2.77
143 144 9.278978 GCTTCCTGGAAATTTATTAAAAACCAA 57.721 29.630 10.86 0.00 31.20 3.67
144 145 8.432805 TGCTTCCTGGAAATTTATTAAAAACCA 58.567 29.630 10.86 9.97 0.00 3.67
145 146 8.717821 GTGCTTCCTGGAAATTTATTAAAAACC 58.282 33.333 10.86 0.00 0.00 3.27
146 147 8.717821 GGTGCTTCCTGGAAATTTATTAAAAAC 58.282 33.333 10.86 0.00 0.00 2.43
147 148 7.600752 CGGTGCTTCCTGGAAATTTATTAAAAA 59.399 33.333 10.86 0.00 0.00 1.94
148 149 7.039644 TCGGTGCTTCCTGGAAATTTATTAAAA 60.040 33.333 10.86 0.00 0.00 1.52
149 150 6.434652 TCGGTGCTTCCTGGAAATTTATTAAA 59.565 34.615 10.86 0.00 0.00 1.52
150 151 5.946972 TCGGTGCTTCCTGGAAATTTATTAA 59.053 36.000 10.86 0.00 0.00 1.40
151 152 5.502079 TCGGTGCTTCCTGGAAATTTATTA 58.498 37.500 10.86 0.00 0.00 0.98
152 153 4.340617 TCGGTGCTTCCTGGAAATTTATT 58.659 39.130 10.86 0.00 0.00 1.40
153 154 3.963129 TCGGTGCTTCCTGGAAATTTAT 58.037 40.909 10.86 0.00 0.00 1.40
154 155 3.426787 TCGGTGCTTCCTGGAAATTTA 57.573 42.857 10.86 0.00 0.00 1.40
155 156 2.286365 TCGGTGCTTCCTGGAAATTT 57.714 45.000 10.86 0.00 0.00 1.82
156 157 2.514458 ATCGGTGCTTCCTGGAAATT 57.486 45.000 10.86 0.00 0.00 1.82
157 158 2.771943 TCTATCGGTGCTTCCTGGAAAT 59.228 45.455 10.86 2.61 0.00 2.17
158 159 2.184533 TCTATCGGTGCTTCCTGGAAA 58.815 47.619 10.86 0.00 0.00 3.13
159 160 1.860641 TCTATCGGTGCTTCCTGGAA 58.139 50.000 9.14 9.14 0.00 3.53
160 161 2.088104 ATCTATCGGTGCTTCCTGGA 57.912 50.000 0.00 0.00 0.00 3.86
161 162 3.511540 TCATATCTATCGGTGCTTCCTGG 59.488 47.826 0.00 0.00 0.00 4.45
162 163 4.790765 TCATATCTATCGGTGCTTCCTG 57.209 45.455 0.00 0.00 0.00 3.86
163 164 5.019470 TGATCATATCTATCGGTGCTTCCT 58.981 41.667 0.00 0.00 0.00 3.36
164 165 5.105752 GTGATCATATCTATCGGTGCTTCC 58.894 45.833 0.00 0.00 0.00 3.46
165 166 5.105554 AGGTGATCATATCTATCGGTGCTTC 60.106 44.000 0.00 0.00 0.00 3.86
166 167 4.774726 AGGTGATCATATCTATCGGTGCTT 59.225 41.667 0.00 0.00 0.00 3.91
167 168 4.348486 AGGTGATCATATCTATCGGTGCT 58.652 43.478 0.00 0.00 0.00 4.40
168 169 4.727507 AGGTGATCATATCTATCGGTGC 57.272 45.455 0.00 0.00 0.00 5.01
169 170 9.905171 CATATAAGGTGATCATATCTATCGGTG 57.095 37.037 0.00 0.00 0.00 4.94
170 171 8.580720 GCATATAAGGTGATCATATCTATCGGT 58.419 37.037 0.00 0.00 0.00 4.69
171 172 8.579863 TGCATATAAGGTGATCATATCTATCGG 58.420 37.037 0.00 0.00 0.00 4.18
193 194 8.686334 CCCATCTTTGTTTAGTAGTTAATGCAT 58.314 33.333 0.00 0.00 0.00 3.96
194 195 7.362574 GCCCATCTTTGTTTAGTAGTTAATGCA 60.363 37.037 0.00 0.00 0.00 3.96
195 196 6.972901 GCCCATCTTTGTTTAGTAGTTAATGC 59.027 38.462 0.00 0.00 0.00 3.56
196 197 7.480810 GGCCCATCTTTGTTTAGTAGTTAATG 58.519 38.462 0.00 0.00 0.00 1.90
197 198 6.317893 CGGCCCATCTTTGTTTAGTAGTTAAT 59.682 38.462 0.00 0.00 0.00 1.40
198 199 5.644636 CGGCCCATCTTTGTTTAGTAGTTAA 59.355 40.000 0.00 0.00 0.00 2.01
199 200 5.180271 CGGCCCATCTTTGTTTAGTAGTTA 58.820 41.667 0.00 0.00 0.00 2.24
200 201 4.007659 CGGCCCATCTTTGTTTAGTAGTT 58.992 43.478 0.00 0.00 0.00 2.24
201 202 3.606687 CGGCCCATCTTTGTTTAGTAGT 58.393 45.455 0.00 0.00 0.00 2.73
202 203 2.354821 GCGGCCCATCTTTGTTTAGTAG 59.645 50.000 0.00 0.00 0.00 2.57
203 204 2.290387 TGCGGCCCATCTTTGTTTAGTA 60.290 45.455 0.00 0.00 0.00 1.82
204 205 1.173913 GCGGCCCATCTTTGTTTAGT 58.826 50.000 0.00 0.00 0.00 2.24
205 206 1.173043 TGCGGCCCATCTTTGTTTAG 58.827 50.000 0.00 0.00 0.00 1.85
206 207 1.846007 ATGCGGCCCATCTTTGTTTA 58.154 45.000 0.00 0.00 0.00 2.01
207 208 0.975887 AATGCGGCCCATCTTTGTTT 59.024 45.000 7.12 0.00 31.43 2.83
208 209 1.846007 TAATGCGGCCCATCTTTGTT 58.154 45.000 7.12 0.00 31.43 2.83
209 210 1.476488 GTTAATGCGGCCCATCTTTGT 59.524 47.619 7.12 0.00 31.43 2.83
210 211 1.750778 AGTTAATGCGGCCCATCTTTG 59.249 47.619 7.12 0.00 31.43 2.77
211 212 2.143876 AGTTAATGCGGCCCATCTTT 57.856 45.000 7.12 0.18 31.43 2.52
212 213 2.172717 AGTAGTTAATGCGGCCCATCTT 59.827 45.455 7.12 0.00 31.43 2.40
213 214 1.768870 AGTAGTTAATGCGGCCCATCT 59.231 47.619 7.12 3.92 31.43 2.90
214 215 2.256117 AGTAGTTAATGCGGCCCATC 57.744 50.000 7.12 0.00 31.43 3.51
215 216 2.969950 TCTAGTAGTTAATGCGGCCCAT 59.030 45.455 0.00 0.00 35.06 4.00
216 217 2.101917 GTCTAGTAGTTAATGCGGCCCA 59.898 50.000 0.00 0.00 0.00 5.36
217 218 2.101917 TGTCTAGTAGTTAATGCGGCCC 59.898 50.000 0.00 0.00 0.00 5.80
218 219 3.447918 TGTCTAGTAGTTAATGCGGCC 57.552 47.619 0.00 0.00 0.00 6.13
219 220 5.107133 TCTTTGTCTAGTAGTTAATGCGGC 58.893 41.667 0.00 0.00 0.00 6.53
220 221 6.201044 CCATCTTTGTCTAGTAGTTAATGCGG 59.799 42.308 0.00 0.00 0.00 5.69
221 222 6.201044 CCCATCTTTGTCTAGTAGTTAATGCG 59.799 42.308 0.00 0.00 0.00 4.73
222 223 6.017852 GCCCATCTTTGTCTAGTAGTTAATGC 60.018 42.308 0.00 0.00 0.00 3.56
223 224 6.483640 GGCCCATCTTTGTCTAGTAGTTAATG 59.516 42.308 0.00 0.00 0.00 1.90
224 225 6.592870 GGCCCATCTTTGTCTAGTAGTTAAT 58.407 40.000 0.00 0.00 0.00 1.40
225 226 5.394883 CGGCCCATCTTTGTCTAGTAGTTAA 60.395 44.000 0.00 0.00 0.00 2.01
226 227 4.098960 CGGCCCATCTTTGTCTAGTAGTTA 59.901 45.833 0.00 0.00 0.00 2.24
227 228 3.118738 CGGCCCATCTTTGTCTAGTAGTT 60.119 47.826 0.00 0.00 0.00 2.24
228 229 2.431057 CGGCCCATCTTTGTCTAGTAGT 59.569 50.000 0.00 0.00 0.00 2.73
229 230 2.431057 ACGGCCCATCTTTGTCTAGTAG 59.569 50.000 0.00 0.00 0.00 2.57
230 231 2.463752 ACGGCCCATCTTTGTCTAGTA 58.536 47.619 0.00 0.00 0.00 1.82
231 232 1.276622 ACGGCCCATCTTTGTCTAGT 58.723 50.000 0.00 0.00 0.00 2.57
232 233 2.009774 CAACGGCCCATCTTTGTCTAG 58.990 52.381 0.00 0.00 0.00 2.43
233 234 1.349688 ACAACGGCCCATCTTTGTCTA 59.650 47.619 0.00 0.00 0.00 2.59
234 235 0.110486 ACAACGGCCCATCTTTGTCT 59.890 50.000 0.00 0.00 0.00 3.41
235 236 1.737793 CTACAACGGCCCATCTTTGTC 59.262 52.381 0.00 0.00 34.15 3.18
236 237 1.349688 TCTACAACGGCCCATCTTTGT 59.650 47.619 0.00 1.85 36.23 2.83
237 238 2.107950 TCTACAACGGCCCATCTTTG 57.892 50.000 0.00 0.00 0.00 2.77
238 239 2.871096 TTCTACAACGGCCCATCTTT 57.129 45.000 0.00 0.00 0.00 2.52
239 240 2.026262 ACATTCTACAACGGCCCATCTT 60.026 45.455 0.00 0.00 0.00 2.40
240 241 1.559682 ACATTCTACAACGGCCCATCT 59.440 47.619 0.00 0.00 0.00 2.90
241 242 2.038387 ACATTCTACAACGGCCCATC 57.962 50.000 0.00 0.00 0.00 3.51
242 243 2.091541 CAACATTCTACAACGGCCCAT 58.908 47.619 0.00 0.00 0.00 4.00
243 244 1.072489 TCAACATTCTACAACGGCCCA 59.928 47.619 0.00 0.00 0.00 5.36
244 245 1.816074 TCAACATTCTACAACGGCCC 58.184 50.000 0.00 0.00 0.00 5.80
245 246 3.907894 TTTCAACATTCTACAACGGCC 57.092 42.857 0.00 0.00 0.00 6.13
246 247 4.145756 CGTTTTTCAACATTCTACAACGGC 59.854 41.667 0.00 0.00 33.76 5.68
247 248 4.673311 CCGTTTTTCAACATTCTACAACGG 59.327 41.667 5.81 5.81 46.60 4.44
248 249 5.267776 ACCGTTTTTCAACATTCTACAACG 58.732 37.500 0.00 0.00 36.41 4.10
249 250 7.632721 TCTACCGTTTTTCAACATTCTACAAC 58.367 34.615 0.00 0.00 32.54 3.32
250 251 7.496591 ACTCTACCGTTTTTCAACATTCTACAA 59.503 33.333 0.00 0.00 32.54 2.41
251 252 6.987992 ACTCTACCGTTTTTCAACATTCTACA 59.012 34.615 0.00 0.00 32.54 2.74
252 253 7.417496 ACTCTACCGTTTTTCAACATTCTAC 57.583 36.000 0.00 0.00 32.54 2.59
253 254 8.579006 TCTACTCTACCGTTTTTCAACATTCTA 58.421 33.333 0.00 0.00 32.54 2.10
254 255 7.384387 GTCTACTCTACCGTTTTTCAACATTCT 59.616 37.037 0.00 0.00 32.54 2.40
255 256 7.384387 AGTCTACTCTACCGTTTTTCAACATTC 59.616 37.037 0.00 0.00 32.54 2.67
256 257 7.215085 AGTCTACTCTACCGTTTTTCAACATT 58.785 34.615 0.00 0.00 32.54 2.71
268 269 2.688958 CCCTTCCAAGTCTACTCTACCG 59.311 54.545 0.00 0.00 0.00 4.02
269 270 3.955551 CTCCCTTCCAAGTCTACTCTACC 59.044 52.174 0.00 0.00 0.00 3.18
271 272 3.269906 AGCTCCCTTCCAAGTCTACTCTA 59.730 47.826 0.00 0.00 0.00 2.43
274 275 2.569404 CAAGCTCCCTTCCAAGTCTACT 59.431 50.000 0.00 0.00 0.00 2.57
275 276 2.567615 TCAAGCTCCCTTCCAAGTCTAC 59.432 50.000 0.00 0.00 0.00 2.59
301 302 7.806409 AACAGCATGCTTATATATTCACACA 57.194 32.000 19.98 0.00 42.53 3.72
302 303 9.764870 CATAACAGCATGCTTATATATTCACAC 57.235 33.333 19.98 0.00 42.53 3.82
304 305 9.764870 CACATAACAGCATGCTTATATATTCAC 57.235 33.333 19.98 0.00 42.53 3.18
306 307 9.764870 CACACATAACAGCATGCTTATATATTC 57.235 33.333 19.98 0.00 42.53 1.75
307 308 9.506018 TCACACATAACAGCATGCTTATATATT 57.494 29.630 19.98 8.24 42.53 1.28
308 309 8.939929 GTCACACATAACAGCATGCTTATATAT 58.060 33.333 19.98 11.04 42.53 0.86
309 310 7.387673 GGTCACACATAACAGCATGCTTATATA 59.612 37.037 19.98 9.12 42.53 0.86
310 311 6.205464 GGTCACACATAACAGCATGCTTATAT 59.795 38.462 19.98 16.08 42.53 0.86
311 312 5.527214 GGTCACACATAACAGCATGCTTATA 59.473 40.000 19.98 14.40 42.53 0.98
312 313 4.336433 GGTCACACATAACAGCATGCTTAT 59.664 41.667 19.98 11.92 42.53 1.73
313 314 3.689161 GGTCACACATAACAGCATGCTTA 59.311 43.478 19.98 9.79 42.53 3.09
324 325 7.411274 CAAAGTTCGTTTAAGGTCACACATAA 58.589 34.615 0.00 0.00 0.00 1.90
326 327 5.732247 GCAAAGTTCGTTTAAGGTCACACAT 60.732 40.000 0.00 0.00 0.00 3.21
332 333 4.679654 CCAATGCAAAGTTCGTTTAAGGTC 59.320 41.667 0.00 0.00 0.00 3.85
352 360 1.686355 ATGAGGTGTTTCGTTGCCAA 58.314 45.000 0.00 0.00 0.00 4.52
356 364 1.871039 ACCGAATGAGGTGTTTCGTTG 59.129 47.619 4.62 0.00 44.07 4.10
357 365 2.140717 GACCGAATGAGGTGTTTCGTT 58.859 47.619 0.00 0.00 46.09 3.85
360 368 1.993370 CTCGACCGAATGAGGTGTTTC 59.007 52.381 0.00 0.00 46.09 2.78
361 369 1.939838 GCTCGACCGAATGAGGTGTTT 60.940 52.381 0.00 0.00 46.09 2.83
364 372 0.179100 ATGCTCGACCGAATGAGGTG 60.179 55.000 0.00 0.00 46.09 4.00
366 374 0.179100 ACATGCTCGACCGAATGAGG 60.179 55.000 10.06 0.00 32.78 3.86
375 383 3.119291 CTCCTCAATACACATGCTCGAC 58.881 50.000 0.00 0.00 0.00 4.20
384 392 5.438761 AAAGTTGCAACTCCTCAATACAC 57.561 39.130 31.20 0.00 38.57 2.90
385 393 5.592282 TCAAAAGTTGCAACTCCTCAATACA 59.408 36.000 31.20 7.06 38.57 2.29
386 394 6.072112 TCAAAAGTTGCAACTCCTCAATAC 57.928 37.500 31.20 0.62 38.57 1.89
394 405 2.159254 TGTGGCTCAAAAGTTGCAACTC 60.159 45.455 31.20 17.53 38.57 3.01
406 417 1.032014 GGAAGCTGTTTGTGGCTCAA 58.968 50.000 0.00 0.00 37.87 3.02
407 418 1.165907 CGGAAGCTGTTTGTGGCTCA 61.166 55.000 0.00 0.00 37.87 4.26
434 445 0.179202 CGGCGCACAATTCATTTCGA 60.179 50.000 10.83 0.00 0.00 3.71
436 447 1.648681 GAACGGCGCACAATTCATTTC 59.351 47.619 10.83 0.00 0.00 2.17
438 449 0.109319 GGAACGGCGCACAATTCATT 60.109 50.000 10.83 0.00 0.00 2.57
444 455 2.975799 GGAAGGAACGGCGCACAA 60.976 61.111 10.83 0.00 0.00 3.33
445 456 3.545124 ATGGAAGGAACGGCGCACA 62.545 57.895 10.83 0.00 0.00 4.57
468 479 1.011595 AGGTAAGGCTGAGGAGGAGA 58.988 55.000 0.00 0.00 0.00 3.71
502 522 3.771216 AGAAGAATTGGTCATTGCAGGT 58.229 40.909 0.00 0.00 0.00 4.00
505 525 5.182570 CAGAGAAGAAGAATTGGTCATTGCA 59.817 40.000 0.00 0.00 0.00 4.08
508 528 4.704057 GCCAGAGAAGAAGAATTGGTCATT 59.296 41.667 0.00 0.00 0.00 2.57
520 540 5.869579 AGATTGTGTAAAGCCAGAGAAGAA 58.130 37.500 0.00 0.00 0.00 2.52
528 548 5.941647 GGTTAGGTTAGATTGTGTAAAGCCA 59.058 40.000 0.00 0.00 0.00 4.75
534 554 5.343715 TCCAGGGTTAGGTTAGATTGTGTA 58.656 41.667 0.00 0.00 0.00 2.90
543 563 4.035112 CACTACCATCCAGGGTTAGGTTA 58.965 47.826 0.00 0.00 43.89 2.85
545 565 2.225805 ACACTACCATCCAGGGTTAGGT 60.226 50.000 0.00 0.00 43.89 3.08
550 570 0.252103 ACGACACTACCATCCAGGGT 60.252 55.000 0.00 0.00 43.89 4.34
555 575 0.892755 TGACCACGACACTACCATCC 59.107 55.000 0.00 0.00 0.00 3.51
558 578 0.386476 GTGTGACCACGACACTACCA 59.614 55.000 0.00 0.00 40.54 3.25
561 581 2.025898 TCTTGTGTGACCACGACACTA 58.974 47.619 0.00 0.00 44.92 2.74
562 582 0.821517 TCTTGTGTGACCACGACACT 59.178 50.000 0.00 0.00 44.92 3.55
566 586 1.066752 CCGTCTTGTGTGACCACGA 59.933 57.895 0.00 0.00 44.92 4.35
581 601 1.179814 GGACATATCGAGGAGGCCGT 61.180 60.000 0.00 0.00 0.00 5.68
609 629 4.217118 AGAGCATGACCTTTGACATTGTTC 59.783 41.667 0.00 0.00 0.00 3.18
622 642 1.282157 AGTGGGGTAAAGAGCATGACC 59.718 52.381 0.00 0.00 0.00 4.02
624 644 1.559682 GGAGTGGGGTAAAGAGCATGA 59.440 52.381 0.00 0.00 0.00 3.07
658 678 2.872858 GCACTTTCCCGGTAGATGAATC 59.127 50.000 0.00 0.00 0.00 2.52
666 686 2.799126 ATGATTGCACTTTCCCGGTA 57.201 45.000 0.00 0.00 0.00 4.02
672 695 3.436704 TGACCGAGAATGATTGCACTTTC 59.563 43.478 0.00 0.00 0.00 2.62
715 741 0.179029 GCCACGCCAGGGTATGTATT 60.179 55.000 0.00 0.00 0.00 1.89
716 742 1.054406 AGCCACGCCAGGGTATGTAT 61.054 55.000 0.00 0.00 37.68 2.29
717 743 1.687840 AGCCACGCCAGGGTATGTA 60.688 57.895 0.00 0.00 37.68 2.29
718 744 3.009115 AGCCACGCCAGGGTATGT 61.009 61.111 0.00 0.00 37.68 2.29
733 759 2.834968 GGCCACCCCATTAGCAGC 60.835 66.667 0.00 0.00 0.00 5.25
734 760 0.753111 GAAGGCCACCCCATTAGCAG 60.753 60.000 5.01 0.00 35.39 4.24
744 770 1.893062 GGCAATGAAGAAGGCCACC 59.107 57.895 5.01 0.00 45.70 4.61
792 818 0.307760 GGATCCCAAAGTATTGCGCG 59.692 55.000 0.00 0.00 35.10 6.86
793 819 1.334869 CAGGATCCCAAAGTATTGCGC 59.665 52.381 8.55 0.00 35.10 6.09
798 824 5.779241 TCTGTTTCAGGATCCCAAAGTAT 57.221 39.130 8.55 0.00 31.51 2.12
822 848 1.093159 CCAAGAGGCTGTCATTGCTC 58.907 55.000 0.00 0.00 0.00 4.26
824 850 2.113860 TACCAAGAGGCTGTCATTGC 57.886 50.000 0.00 0.00 39.06 3.56
862 888 2.284331 TTGCAGCTCGGGGTCCTA 60.284 61.111 0.00 0.00 0.00 2.94
865 891 2.435059 GTCTTGCAGCTCGGGGTC 60.435 66.667 0.00 0.00 0.00 4.46
873 899 3.240069 GTTGTCATTGATGTCTTGCAGC 58.760 45.455 0.00 0.00 0.00 5.25
874 900 3.253921 TGGTTGTCATTGATGTCTTGCAG 59.746 43.478 0.00 0.00 0.00 4.41
888 914 1.018752 CGATGCCGATGTGGTTGTCA 61.019 55.000 0.00 0.00 41.21 3.58
919 945 6.038714 GCCGTATGAGATTGAAAGGAGAAAAT 59.961 38.462 0.00 0.00 0.00 1.82
930 956 1.123077 AGCCAGCCGTATGAGATTGA 58.877 50.000 0.00 0.00 0.00 2.57
939 965 2.100916 GTCTTCATAGAAGCCAGCCGTA 59.899 50.000 1.96 0.00 30.65 4.02
940 966 1.134670 GTCTTCATAGAAGCCAGCCGT 60.135 52.381 1.96 0.00 30.65 5.68
969 995 0.884704 GCGTCAGGTTCTTGAAGGCA 60.885 55.000 0.00 0.00 32.26 4.75
1002 1028 2.817844 GTCCACCCACAATTGTAGTTCC 59.182 50.000 11.53 0.00 0.00 3.62
1008 1034 3.686016 GTCATAGTCCACCCACAATTGT 58.314 45.455 4.92 4.92 0.00 2.71
1011 1037 2.168521 CTCGTCATAGTCCACCCACAAT 59.831 50.000 0.00 0.00 0.00 2.71
1029 1055 3.334583 TTGATCCTTGTTTCCTCCTCG 57.665 47.619 0.00 0.00 0.00 4.63
1068 1094 1.904287 TCAAGGGTTTTCCGACATGG 58.096 50.000 0.00 0.00 41.82 3.66
1074 1100 0.313987 GTGGCTTCAAGGGTTTTCCG 59.686 55.000 0.00 0.00 41.82 4.30
1085 1111 2.813754 GTTGCAGACAATAGTGGCTTCA 59.186 45.455 0.00 0.00 42.06 3.02
1095 1121 3.521126 AGAGGTCATAGGTTGCAGACAAT 59.479 43.478 4.20 0.00 38.27 2.71
1101 1127 2.906389 AGTTGAGAGGTCATAGGTTGCA 59.094 45.455 0.00 0.00 30.85 4.08
1122 1148 1.820010 ATGCTGTCTCCGTGAGCACA 61.820 55.000 0.00 0.00 45.15 4.57
1137 1163 7.605691 GCAGTAGATGAGAAACCAATATATGCT 59.394 37.037 0.00 0.00 0.00 3.79
1158 1184 6.812998 ACTAGTGTTTGTAAGTTCAGCAGTA 58.187 36.000 0.00 0.00 0.00 2.74
1161 1187 5.666462 TGACTAGTGTTTGTAAGTTCAGCA 58.334 37.500 0.00 0.00 0.00 4.41
1172 1198 8.322906 TCCAAGAACATAATGACTAGTGTTTG 57.677 34.615 0.00 0.00 35.15 2.93
1173 1199 8.950210 CATCCAAGAACATAATGACTAGTGTTT 58.050 33.333 0.00 0.00 35.15 2.83
1179 1205 6.100279 AGCTCCATCCAAGAACATAATGACTA 59.900 38.462 0.00 0.00 0.00 2.59
1180 1206 5.104193 AGCTCCATCCAAGAACATAATGACT 60.104 40.000 0.00 0.00 0.00 3.41
1206 1232 1.331756 GGAGCTTGCATGTTCATACCG 59.668 52.381 16.42 0.00 0.00 4.02
1209 1235 2.279741 GACGGAGCTTGCATGTTCATA 58.720 47.619 16.42 0.00 0.00 2.15
1216 1242 0.035152 TCAATGGACGGAGCTTGCAT 60.035 50.000 0.00 0.00 0.00 3.96
1217 1243 0.955428 GTCAATGGACGGAGCTTGCA 60.955 55.000 0.00 0.00 33.68 4.08
1282 1311 1.332997 GATGATCGCCAAGAGCTTTGG 59.667 52.381 18.09 18.09 42.37 3.28
1284 1313 1.211457 AGGATGATCGCCAAGAGCTTT 59.789 47.619 7.13 0.00 40.39 3.51
1314 1343 3.353557 AGACATGATCAATGCTGCAGTT 58.646 40.909 16.64 0.00 40.22 3.16
1324 1353 3.638627 AGAGTGCCGATAGACATGATCAA 59.361 43.478 0.00 0.00 39.76 2.57
1329 1358 1.335182 ACGAGAGTGCCGATAGACATG 59.665 52.381 0.00 0.00 46.97 3.21
1374 1403 2.159085 GCGCACCTCACTATACCTTCTT 60.159 50.000 0.30 0.00 0.00 2.52
1375 1404 1.409427 GCGCACCTCACTATACCTTCT 59.591 52.381 0.30 0.00 0.00 2.85
1452 1481 5.420725 TGCTCTTAAATCCTTGAGTAGCA 57.579 39.130 0.00 0.00 33.31 3.49
1482 1511 1.002011 GAACCCTCCTGCTCCAACC 60.002 63.158 0.00 0.00 0.00 3.77
1519 1548 3.885297 TCCTTCTTGGAAAACTGAAGCAG 59.115 43.478 0.00 0.00 42.94 4.24
1530 1559 0.175760 CGGCGATCTCCTTCTTGGAA 59.824 55.000 0.00 0.00 45.63 3.53
1566 1595 1.095600 TCATCCCTTGTCTCGACTCG 58.904 55.000 0.00 0.00 0.00 4.18
1735 1764 2.358737 GGTGGGCTTGTCGTCCTG 60.359 66.667 0.00 0.00 38.58 3.86
1812 1841 1.270358 ACTTTCTCCCACTTCTCGTGC 60.270 52.381 0.00 0.00 42.42 5.34
1839 1868 3.134127 GCCTTGATGTCCCGGTGC 61.134 66.667 0.00 0.00 0.00 5.01
1929 1958 2.202797 CTCTGTGGATCGGTGCCG 60.203 66.667 3.94 3.94 41.35 5.69
2049 2078 3.243704 GCTTTTGCCCACATGTAACTTCA 60.244 43.478 0.00 0.00 40.15 3.02
2074 2103 0.977395 ACTGTAGGACCTTGCCTGAC 59.023 55.000 0.00 0.00 39.08 3.51
2076 2105 0.036010 CCACTGTAGGACCTTGCCTG 60.036 60.000 0.00 0.00 39.08 4.85
2078 2107 0.690762 TTCCACTGTAGGACCTTGCC 59.309 55.000 0.00 0.00 37.42 4.52
2084 2113 2.105993 ACCTGGTTTTCCACTGTAGGAC 59.894 50.000 0.00 0.00 46.22 3.85
2086 2115 2.951229 ACCTGGTTTTCCACTGTAGG 57.049 50.000 0.00 0.00 46.22 3.18
2096 2125 3.196901 GTCCACCAAGAAAACCTGGTTTT 59.803 43.478 31.73 31.73 46.51 2.43
2100 2129 1.956477 CAGTCCACCAAGAAAACCTGG 59.044 52.381 0.00 0.00 0.00 4.45
2181 2210 0.386352 CTTCGTCAACGCCGTAGTCA 60.386 55.000 0.00 0.00 39.60 3.41
2269 2298 2.263077 GTCGAGGTACTGCATGACTTG 58.737 52.381 0.00 0.00 41.55 3.16
2301 2330 0.676782 TCGTCGTCATCTCTGGCAGA 60.677 55.000 17.68 17.68 34.78 4.26
2307 2336 1.425825 CTGCGTCGTCGTCATCTCT 59.574 57.895 3.66 0.00 39.49 3.10
2311 2340 2.504899 CAGCTGCGTCGTCGTCAT 60.505 61.111 0.00 0.00 39.49 3.06
2337 2366 1.389609 CCTGCATCAACCCCTGCATC 61.390 60.000 0.00 0.00 46.48 3.91
2369 2398 1.933853 GGTAAGACATGACGGATGTGC 59.066 52.381 0.00 0.73 45.90 4.57
2373 2402 1.129058 GGGGGTAAGACATGACGGAT 58.871 55.000 0.00 0.00 0.00 4.18
2376 2405 0.462047 GCTGGGGGTAAGACATGACG 60.462 60.000 0.00 0.00 0.00 4.35
2388 2417 2.593978 CTGGACATCAGCTGGGGG 59.406 66.667 15.13 6.26 36.60 5.40
2469 2498 2.680339 GCCAAGCTAGAACATCCAAGAC 59.320 50.000 0.00 0.00 0.00 3.01
2473 2502 4.102996 TCATATGCCAAGCTAGAACATCCA 59.897 41.667 0.00 0.00 0.00 3.41
2479 2508 6.670695 TCATACTCATATGCCAAGCTAGAA 57.329 37.500 0.00 0.00 38.50 2.10
2494 2523 6.865205 CGTGAGCATCTAATTGATCATACTCA 59.135 38.462 0.00 0.00 43.24 3.41
2532 2561 7.536622 GGAAAATAGAAGCGAATTATGAGCATG 59.463 37.037 0.00 0.00 0.00 4.06
2546 2575 5.533482 TCATCTCTAGCGGAAAATAGAAGC 58.467 41.667 0.00 0.00 0.00 3.86
2547 2576 8.600449 AATTCATCTCTAGCGGAAAATAGAAG 57.400 34.615 0.00 0.00 0.00 2.85
2548 2577 8.964476 AAATTCATCTCTAGCGGAAAATAGAA 57.036 30.769 0.00 0.00 0.00 2.10
2582 2614 7.556275 AGACAGTTCCTCTAAAACAAACATCAA 59.444 33.333 0.00 0.00 0.00 2.57
2590 2622 7.392113 TCAAAACAAGACAGTTCCTCTAAAACA 59.608 33.333 0.00 0.00 0.00 2.83
2591 2623 7.758495 TCAAAACAAGACAGTTCCTCTAAAAC 58.242 34.615 0.00 0.00 0.00 2.43
2610 2642 5.337571 GGATTCCTCCCAAATTCCTCAAAAC 60.338 44.000 0.00 0.00 35.28 2.43
2637 2669 3.631686 CGACCCATGCATTTTCCATAAGA 59.368 43.478 0.00 0.00 0.00 2.10
2655 2687 0.464036 TAGGATCACATGCACCGACC 59.536 55.000 0.00 0.00 0.00 4.79
2657 2689 4.681074 TTAATAGGATCACATGCACCGA 57.319 40.909 0.00 0.00 0.00 4.69
2658 2690 5.749596 TTTTAATAGGATCACATGCACCG 57.250 39.130 0.00 0.00 0.00 4.94
2725 2757 8.574251 AACAAATACTGCTCACATAATTACCA 57.426 30.769 0.00 0.00 0.00 3.25
2982 3015 2.119801 TAGTACTCCCACCGTCTCAC 57.880 55.000 0.00 0.00 0.00 3.51
3059 3092 9.546909 CTCTAAACGTCTACACTCGTAATAAAA 57.453 33.333 0.00 0.00 39.39 1.52
3067 3100 6.581542 ACATTTTCTCTAAACGTCTACACTCG 59.418 38.462 0.00 0.00 0.00 4.18
3085 3118 6.898041 TGCACACACTATAGTTCACATTTTC 58.102 36.000 1.56 0.00 0.00 2.29
3086 3119 6.875948 TGCACACACTATAGTTCACATTTT 57.124 33.333 1.56 0.00 0.00 1.82
3087 3120 6.623549 GCATGCACACACTATAGTTCACATTT 60.624 38.462 14.21 0.00 0.00 2.32
3088 3121 5.163723 GCATGCACACACTATAGTTCACATT 60.164 40.000 14.21 0.00 0.00 2.71
3089 3122 4.333649 GCATGCACACACTATAGTTCACAT 59.666 41.667 14.21 0.70 0.00 3.21
3090 3123 3.684305 GCATGCACACACTATAGTTCACA 59.316 43.478 14.21 0.00 0.00 3.58
3091 3124 3.684305 TGCATGCACACACTATAGTTCAC 59.316 43.478 18.46 0.00 0.00 3.18
3092 3125 3.684305 GTGCATGCACACACTATAGTTCA 59.316 43.478 39.12 2.34 45.53 3.18
3093 3126 4.264543 GTGCATGCACACACTATAGTTC 57.735 45.455 39.12 12.67 45.53 3.01
3312 3346 5.636903 TGAGAAGATGATTTCCCCCTTAG 57.363 43.478 0.00 0.00 0.00 2.18
3339 3373 2.093890 TCCGTTAGCTGACCGTCATTA 58.906 47.619 0.62 0.00 0.00 1.90
3340 3374 0.892755 TCCGTTAGCTGACCGTCATT 59.107 50.000 0.62 0.00 0.00 2.57
3354 3388 0.744281 CCAAAGTTGCCACTTCCGTT 59.256 50.000 3.30 0.00 42.89 4.44
3373 3407 5.348724 TCACTCTGAAATTCTGCGTTATGTC 59.651 40.000 0.00 0.00 0.00 3.06
3379 3413 2.481952 GCTTCACTCTGAAATTCTGCGT 59.518 45.455 0.00 0.00 35.73 5.24
3380 3414 2.473540 CGCTTCACTCTGAAATTCTGCG 60.474 50.000 0.00 0.00 38.80 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.