Multiple sequence alignment - TraesCS6A01G352300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G352300 chr6A 100.000 4913 0 0 1 4913 584942628 584947540 0.000000e+00 9073
1 TraesCS6A01G352300 chr6D 90.674 4804 270 69 1 4668 436732813 436737574 0.000000e+00 6226
2 TraesCS6A01G352300 chr6D 87.448 239 30 0 4675 4913 436737617 436737855 4.840000e-70 276
3 TraesCS6A01G352300 chr6B 92.407 3016 147 36 1317 4262 660218465 660221468 0.000000e+00 4226
4 TraesCS6A01G352300 chr6B 88.048 1322 65 35 1 1264 660217178 660218464 0.000000e+00 1480
5 TraesCS6A01G352300 chr6B 84.382 429 29 16 4264 4664 660224334 660224752 2.140000e-103 387
6 TraesCS6A01G352300 chr6B 83.333 438 37 13 1 434 660215955 660216360 6.010000e-99 372
7 TraesCS6A01G352300 chr3D 82.274 299 42 9 2528 2823 576611480 576611770 1.060000e-61 248
8 TraesCS6A01G352300 chr5D 80.294 340 50 12 2529 2864 3787694 3788020 1.770000e-59 241
9 TraesCS6A01G352300 chr1A 80.119 337 53 11 2528 2859 42509347 42509674 6.360000e-59 239
10 TraesCS6A01G352300 chr1D 84.932 146 18 2 2533 2678 495252990 495252849 1.430000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G352300 chr6A 584942628 584947540 4912 False 9073.00 9073 100.0000 1 4913 1 chr6A.!!$F1 4912
1 TraesCS6A01G352300 chr6D 436732813 436737855 5042 False 3251.00 6226 89.0610 1 4913 2 chr6D.!!$F1 4912
2 TraesCS6A01G352300 chr6B 660215955 660224752 8797 False 1616.25 4226 87.0425 1 4664 4 chr6B.!!$F1 4663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
894 2190 0.527565 CTTGCCATCTTTCCCCAACG 59.472 55.0 0.0 0.0 0.0 4.10 F
2460 3781 0.035152 CCCTATGCAGCTCAACACCA 60.035 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2517 3838 0.542805 TACGTATTTGACCCCCTGGC 59.457 55.0 0.0 0.0 33.59 4.85 R
4304 8568 0.108207 GCACATGGAGATGGAGAGGG 59.892 60.0 0.0 0.0 33.39 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.096406 CGCGCGAGGTTGACATTG 59.904 61.111 28.94 0.00 0.00 2.82
117 122 0.818938 GGTCTTCTCCCTCGGTCTTC 59.181 60.000 0.00 0.00 0.00 2.87
118 123 1.617533 GGTCTTCTCCCTCGGTCTTCT 60.618 57.143 0.00 0.00 0.00 2.85
119 124 2.356947 GGTCTTCTCCCTCGGTCTTCTA 60.357 54.545 0.00 0.00 0.00 2.10
145 150 3.551659 CCCTAGCGTTATCGGTACCTTTC 60.552 52.174 10.90 0.00 46.01 2.62
191 1419 2.430921 CTGTCGCTGACCACGTCC 60.431 66.667 6.30 0.00 0.00 4.79
192 1420 4.337060 TGTCGCTGACCACGTCCG 62.337 66.667 6.30 0.00 0.00 4.79
206 1434 1.338389 ACGTCCGTAAATCACAAGGGG 60.338 52.381 0.00 0.00 0.00 4.79
380 1632 4.978083 AAGCAAGCCATGTCTTATCTTG 57.022 40.909 3.36 0.00 37.70 3.02
387 1639 6.017400 AGCCATGTCTTATCTTGTTTGTTG 57.983 37.500 0.00 0.00 0.00 3.33
424 1676 1.922135 GCACATCGCCGTGGTGATTT 61.922 55.000 12.14 3.76 42.66 2.17
425 1677 1.364721 CACATCGCCGTGGTGATTTA 58.635 50.000 12.14 0.00 42.66 1.40
426 1678 1.735018 CACATCGCCGTGGTGATTTAA 59.265 47.619 12.14 0.00 42.66 1.52
427 1679 2.354510 CACATCGCCGTGGTGATTTAAT 59.645 45.455 12.14 0.00 42.66 1.40
428 1680 3.013921 ACATCGCCGTGGTGATTTAATT 58.986 40.909 12.14 0.00 42.66 1.40
429 1681 3.064820 ACATCGCCGTGGTGATTTAATTC 59.935 43.478 12.14 0.00 42.66 2.17
568 1827 4.351054 CTGCCACCACCACCCTCC 62.351 72.222 0.00 0.00 0.00 4.30
582 1842 2.182791 CTCCGCACTGCATCTCGT 59.817 61.111 1.11 0.00 0.00 4.18
585 1845 2.202479 CGCACTGCATCTCGTCGA 60.202 61.111 1.11 0.00 0.00 4.20
588 1848 1.154207 CACTGCATCTCGTCGACGT 60.154 57.895 34.40 15.71 40.80 4.34
757 2053 1.995626 CAGTGATTCCCCCTCCGGT 60.996 63.158 0.00 0.00 0.00 5.28
845 2141 4.593864 GATCGGGACCAGCGAGCC 62.594 72.222 0.00 0.00 0.00 4.70
891 2187 1.549950 GGTTCTTGCCATCTTTCCCCA 60.550 52.381 0.00 0.00 0.00 4.96
892 2188 2.247358 GTTCTTGCCATCTTTCCCCAA 58.753 47.619 0.00 0.00 0.00 4.12
893 2189 1.923356 TCTTGCCATCTTTCCCCAAC 58.077 50.000 0.00 0.00 0.00 3.77
894 2190 0.527565 CTTGCCATCTTTCCCCAACG 59.472 55.000 0.00 0.00 0.00 4.10
895 2191 0.897863 TTGCCATCTTTCCCCAACGG 60.898 55.000 0.00 0.00 0.00 4.44
897 2193 2.406616 CCATCTTTCCCCAACGGCG 61.407 63.158 4.80 4.80 0.00 6.46
941 2245 1.230324 GGGAGCATTTGATACGAGGC 58.770 55.000 0.00 0.00 0.00 4.70
984 2288 2.125912 CTCTGGCCGTGAAGACCG 60.126 66.667 0.00 0.00 0.00 4.79
1236 2540 4.320494 CCAGACTGGCTAAAATGTTGACAC 60.320 45.833 8.99 0.00 0.00 3.67
1251 2555 7.878477 ATGTTGACACTTATGCATTCAAAAG 57.122 32.000 3.54 4.81 0.00 2.27
1255 2559 7.275888 TGACACTTATGCATTCAAAAGAACT 57.724 32.000 3.54 0.00 0.00 3.01
1264 2568 6.162079 TGCATTCAAAAGAACTTGTTGACAA 58.838 32.000 0.00 0.00 31.21 3.18
1265 2569 6.817641 TGCATTCAAAAGAACTTGTTGACAAT 59.182 30.769 0.00 0.00 35.02 2.71
1267 2571 8.177013 GCATTCAAAAGAACTTGTTGACAATTT 58.823 29.630 0.00 0.00 35.02 1.82
1268 2572 9.480538 CATTCAAAAGAACTTGTTGACAATTTG 57.519 29.630 11.07 11.07 34.60 2.32
1269 2573 8.600449 TTCAAAAGAACTTGTTGACAATTTGT 57.400 26.923 0.63 0.63 34.75 2.83
1270 2574 8.016497 TCAAAAGAACTTGTTGACAATTTGTG 57.984 30.769 6.80 0.00 34.75 3.33
1271 2575 6.407475 AAAGAACTTGTTGACAATTTGTGC 57.593 33.333 6.80 0.00 35.02 4.57
1277 2581 5.521010 ACTTGTTGACAATTTGTGCTGATTG 59.479 36.000 6.80 0.00 38.79 2.67
1290 2594 1.631405 CTGATTGGGCAAAGGAACCA 58.369 50.000 0.00 0.00 0.00 3.67
1302 2606 4.362279 CAAAGGAACCACACTCACATTTG 58.638 43.478 0.00 0.00 0.00 2.32
1308 2612 3.620488 ACCACACTCACATTTGTCTGTT 58.380 40.909 0.00 0.00 0.00 3.16
1310 2614 3.365832 CACACTCACATTTGTCTGTTGC 58.634 45.455 0.00 0.00 0.00 4.17
1313 2617 3.065786 CACTCACATTTGTCTGTTGCTGT 59.934 43.478 0.00 0.00 0.00 4.40
1314 2618 3.696051 ACTCACATTTGTCTGTTGCTGTT 59.304 39.130 0.00 0.00 0.00 3.16
1315 2619 4.201950 ACTCACATTTGTCTGTTGCTGTTC 60.202 41.667 0.00 0.00 0.00 3.18
1352 2656 1.424493 CTCTGTTGCTCGAATCCGGC 61.424 60.000 0.00 0.00 36.24 6.13
1376 2680 5.453903 CGTGGAGATCAACCTCAGGAATTAT 60.454 44.000 0.00 0.00 34.94 1.28
1405 2709 4.808364 GCAGGTAAACTCAATCTCTGCTAG 59.192 45.833 0.00 0.00 41.75 3.42
1406 2710 5.625656 GCAGGTAAACTCAATCTCTGCTAGT 60.626 44.000 0.00 0.00 41.75 2.57
1407 2711 5.809562 CAGGTAAACTCAATCTCTGCTAGTG 59.190 44.000 0.00 0.00 0.00 2.74
1425 2731 8.830201 TGCTAGTGCATTTTTGTAATTTTCAT 57.170 26.923 0.00 0.00 45.31 2.57
1426 2732 9.270640 TGCTAGTGCATTTTTGTAATTTTCATT 57.729 25.926 0.00 0.00 45.31 2.57
1427 2733 9.745323 GCTAGTGCATTTTTGTAATTTTCATTC 57.255 29.630 0.00 0.00 39.41 2.67
1439 2745 7.233689 TGTAATTTTCATTCAGTTCGACATCG 58.766 34.615 0.00 0.00 41.45 3.84
1450 2756 3.193691 AGTTCGACATCGGAGATGAAGTT 59.806 43.478 15.91 0.00 45.12 2.66
1455 2761 2.567169 ACATCGGAGATGAAGTTGGTCA 59.433 45.455 15.91 0.00 45.12 4.02
1596 2902 4.551410 GCATTTTTCTTGCTGTTTCACTGC 60.551 41.667 0.00 0.00 42.44 4.40
1602 2908 4.388485 TCTTGCTGTTTCACTGCTATTCA 58.612 39.130 7.21 0.00 42.56 2.57
1842 3149 4.780815 TGATGAGTATGTTGGGTCCATTC 58.219 43.478 0.00 0.00 0.00 2.67
1926 3233 5.055265 TGGTCAAGATGGTAAACTGGAAA 57.945 39.130 0.00 0.00 0.00 3.13
1947 3254 1.766461 AGATGGAGGCCTAACCCCG 60.766 63.158 4.42 0.00 40.58 5.73
2083 3391 7.836842 AGGTATTTCACAACTGTTTTTCTGTT 58.163 30.769 0.00 0.00 38.43 3.16
2085 3393 7.757624 GGTATTTCACAACTGTTTTTCTGTTCA 59.242 33.333 0.00 0.00 36.35 3.18
2086 3394 9.134734 GTATTTCACAACTGTTTTTCTGTTCAA 57.865 29.630 0.00 0.00 36.35 2.69
2089 3397 6.378582 TCACAACTGTTTTTCTGTTCAACTC 58.621 36.000 0.00 0.00 36.35 3.01
2090 3398 6.016693 TCACAACTGTTTTTCTGTTCAACTCA 60.017 34.615 0.00 0.00 36.35 3.41
2091 3399 6.640499 CACAACTGTTTTTCTGTTCAACTCAA 59.360 34.615 0.00 0.00 36.35 3.02
2123 3444 9.880157 ATTTTTCAGCTTTATACTTCAATGCAT 57.120 25.926 0.00 0.00 0.00 3.96
2138 3459 9.006839 ACTTCAATGCATATATGATGGTGTTAG 57.993 33.333 17.10 11.05 0.00 2.34
2144 3465 8.607441 TGCATATATGATGGTGTTAGAACTTC 57.393 34.615 17.10 0.00 0.00 3.01
2202 3523 0.664761 CCCCACTTCATTATGCTGCG 59.335 55.000 0.00 0.00 0.00 5.18
2255 3576 3.753272 TGTTCTGCTAATCTGAAGGCAAC 59.247 43.478 0.00 0.00 34.03 4.17
2302 3623 6.618287 TTTTCTCAATATCCGCTAACCATG 57.382 37.500 0.00 0.00 0.00 3.66
2354 3675 1.301165 GCCAACCTTGCTGCCAAAG 60.301 57.895 0.00 0.00 0.00 2.77
2380 3701 7.716799 TGCTAGTGGGTATGATTTTGAATTT 57.283 32.000 0.00 0.00 0.00 1.82
2381 3702 8.815565 TGCTAGTGGGTATGATTTTGAATTTA 57.184 30.769 0.00 0.00 0.00 1.40
2407 3728 8.547967 TTCTACATACAAAGAATTGTCAGTCC 57.452 34.615 0.00 0.00 46.78 3.85
2411 3732 8.237811 ACATACAAAGAATTGTCAGTCCTTTT 57.762 30.769 0.00 0.00 46.78 2.27
2413 3734 6.773976 ACAAAGAATTGTCAGTCCTTTTGA 57.226 33.333 0.00 0.00 46.78 2.69
2414 3735 7.169158 ACAAAGAATTGTCAGTCCTTTTGAA 57.831 32.000 0.00 0.00 46.78 2.69
2443 3764 3.737850 TGATTTGGTTGTTCATTTGCCC 58.262 40.909 0.00 0.00 0.00 5.36
2457 3778 4.643795 GCCCTATGCAGCTCAACA 57.356 55.556 0.00 0.00 40.77 3.33
2460 3781 0.035152 CCCTATGCAGCTCAACACCA 60.035 55.000 0.00 0.00 0.00 4.17
2682 4005 9.604626 CAAATTGAGTTTGTTTAGCTCTAGAAG 57.395 33.333 0.00 0.00 41.80 2.85
2721 4044 2.176045 TGAGGCTGTCCGTATCTTTGA 58.824 47.619 0.00 0.00 37.47 2.69
2736 4059 0.965363 TTTGATTGAGAAGGCCGGGC 60.965 55.000 22.67 22.67 0.00 6.13
2865 4188 6.985188 TTCCTATAAGTTGTCATCTGTTGC 57.015 37.500 0.00 0.00 0.00 4.17
2867 4190 6.108687 TCCTATAAGTTGTCATCTGTTGCTG 58.891 40.000 0.00 0.00 0.00 4.41
2924 4247 6.556639 TGGTCTCTTATAGTATGATCAGGCT 58.443 40.000 0.09 4.32 0.00 4.58
2925 4248 6.435591 TGGTCTCTTATAGTATGATCAGGCTG 59.564 42.308 8.58 8.58 0.00 4.85
2947 4270 2.053747 ATGTTGTCCCTAACCCTGGA 57.946 50.000 0.00 0.00 0.00 3.86
3113 4440 3.550820 TGTATGTATTGACCCATGTGCC 58.449 45.455 0.00 0.00 0.00 5.01
3154 4481 2.938756 GCTCTGTTGCTGCAGAAGGTAT 60.939 50.000 20.43 0.00 43.92 2.73
3168 4495 7.126726 GCAGAAGGTATGCAGTGAAATATAG 57.873 40.000 0.00 0.00 43.31 1.31
3169 4496 6.708054 GCAGAAGGTATGCAGTGAAATATAGT 59.292 38.462 0.00 0.00 43.31 2.12
3170 4497 7.095439 GCAGAAGGTATGCAGTGAAATATAGTC 60.095 40.741 0.00 0.00 43.31 2.59
3171 4498 7.115520 CAGAAGGTATGCAGTGAAATATAGTCG 59.884 40.741 0.00 0.00 0.00 4.18
3173 4500 7.520451 AGGTATGCAGTGAAATATAGTCGTA 57.480 36.000 0.00 0.00 0.00 3.43
3174 4501 7.368833 AGGTATGCAGTGAAATATAGTCGTAC 58.631 38.462 0.00 0.00 0.00 3.67
3175 4502 7.013942 AGGTATGCAGTGAAATATAGTCGTACA 59.986 37.037 0.00 0.00 0.00 2.90
3178 4505 7.039313 TGCAGTGAAATATAGTCGTACATCT 57.961 36.000 0.00 0.00 0.00 2.90
3179 4506 7.489160 TGCAGTGAAATATAGTCGTACATCTT 58.511 34.615 0.00 0.00 0.00 2.40
3181 4508 8.903723 GCAGTGAAATATAGTCGTACATCTTAC 58.096 37.037 0.00 0.00 0.00 2.34
3194 4521 8.074370 GTCGTACATCTTACTCACATGCTATTA 58.926 37.037 0.00 0.00 0.00 0.98
3238 4565 8.072567 CAGATTACGGGAAATGATTTCATCTTC 58.927 37.037 18.55 8.03 41.43 2.87
3239 4566 7.775093 AGATTACGGGAAATGATTTCATCTTCA 59.225 33.333 18.55 0.00 41.43 3.02
3363 4698 2.415512 CGCAGGGAGTACAAAAGTAAGC 59.584 50.000 0.00 0.00 0.00 3.09
3364 4699 3.408634 GCAGGGAGTACAAAAGTAAGCA 58.591 45.455 0.00 0.00 0.00 3.91
3365 4700 4.010349 GCAGGGAGTACAAAAGTAAGCAT 58.990 43.478 0.00 0.00 0.00 3.79
3366 4701 4.142600 GCAGGGAGTACAAAAGTAAGCATG 60.143 45.833 0.00 0.00 0.00 4.06
3367 4702 5.003804 CAGGGAGTACAAAAGTAAGCATGT 58.996 41.667 0.00 0.00 0.00 3.21
3369 4704 5.473504 AGGGAGTACAAAAGTAAGCATGTTG 59.526 40.000 0.00 0.00 0.00 3.33
3435 4770 0.109412 GCAAGCATGAGTTCTGCACC 60.109 55.000 0.00 0.00 42.15 5.01
3533 4868 2.107141 CCCGATCACCTCCTTCGC 59.893 66.667 0.00 0.00 0.00 4.70
3536 4871 2.893398 GATCACCTCCTTCGCGGT 59.107 61.111 6.13 0.00 0.00 5.68
3894 5232 0.180171 CCGTGACATTCAGCCCCATA 59.820 55.000 0.00 0.00 0.00 2.74
3918 5256 0.607217 CCACCAGCAGCTGATGAACA 60.607 55.000 32.59 0.00 32.44 3.18
3919 5257 0.520404 CACCAGCAGCTGATGAACAC 59.480 55.000 32.59 5.27 32.44 3.32
3936 5277 1.002134 ACCATCCGGTTTCTGCCAG 60.002 57.895 0.00 0.00 46.31 4.85
4044 5391 1.527370 GGTCGAAATCCCTCCCCTG 59.473 63.158 0.00 0.00 0.00 4.45
4050 5397 0.409484 AAATCCCTCCCCTGTTGGTG 59.591 55.000 0.00 0.00 0.00 4.17
4070 5423 8.797438 GTTGGTGTCTATCATATCATGAGTAGA 58.203 37.037 0.09 0.00 43.53 2.59
4071 5424 9.539194 TTGGTGTCTATCATATCATGAGTAGAT 57.461 33.333 0.09 6.67 43.53 1.98
4072 5425 9.539194 TGGTGTCTATCATATCATGAGTAGATT 57.461 33.333 0.09 0.00 43.53 2.40
4133 5499 5.203060 TGGGTTTGTAAATAACCTTGTGC 57.797 39.130 0.00 0.00 43.66 4.57
4198 5594 2.568090 CGGTGGTTGAATGGCTGC 59.432 61.111 0.00 0.00 0.00 5.25
4218 5614 4.966787 GTGGCCGGCACAAAGGGA 62.967 66.667 30.85 0.00 0.00 4.20
4262 5662 0.112218 TGGTACAGCCCTGCATGTTT 59.888 50.000 0.00 0.00 36.04 2.83
4271 8535 2.612471 GCCCTGCATGTTTTATGTTGCA 60.612 45.455 0.00 0.00 42.41 4.08
4290 8554 2.597217 TGCTTTTGGTGGCTCCGG 60.597 61.111 0.00 0.00 39.52 5.14
4304 8568 2.505557 CCGGTAACTGTCCGTCGC 60.506 66.667 7.10 0.00 45.63 5.19
4344 8617 3.479269 GCTGCACGTACTGCCGTC 61.479 66.667 6.38 2.87 46.51 4.79
4345 8618 2.258591 CTGCACGTACTGCCGTCT 59.741 61.111 12.71 0.00 46.51 4.18
4346 8619 2.049526 TGCACGTACTGCCGTCTG 60.050 61.111 12.71 0.00 46.51 3.51
4347 8620 3.479269 GCACGTACTGCCGTCTGC 61.479 66.667 6.14 0.00 40.42 4.26
4348 8621 2.809601 CACGTACTGCCGTCTGCC 60.810 66.667 0.00 0.00 39.45 4.85
4349 8622 4.415332 ACGTACTGCCGTCTGCCG 62.415 66.667 0.00 0.00 35.95 5.69
4378 8651 4.532314 TGTTTATGATTGTTGCCATGCA 57.468 36.364 0.00 0.00 36.47 3.96
4419 8695 7.984050 GTCATCAAGAAGAGTTCATTGGAGATA 59.016 37.037 0.00 0.00 0.00 1.98
4422 8698 7.326454 TCAAGAAGAGTTCATTGGAGATACTG 58.674 38.462 0.00 0.00 0.00 2.74
4433 8712 4.665833 TGGAGATACTGGTACAATTCCG 57.334 45.455 0.00 0.00 38.70 4.30
4434 8713 4.283337 TGGAGATACTGGTACAATTCCGA 58.717 43.478 0.00 0.00 38.70 4.55
4435 8714 4.899457 TGGAGATACTGGTACAATTCCGAT 59.101 41.667 0.00 0.00 38.70 4.18
4436 8715 5.010719 TGGAGATACTGGTACAATTCCGATC 59.989 44.000 0.00 0.00 38.70 3.69
4437 8716 5.244178 GGAGATACTGGTACAATTCCGATCT 59.756 44.000 0.00 0.00 38.70 2.75
4438 8717 6.239345 GGAGATACTGGTACAATTCCGATCTT 60.239 42.308 0.00 0.00 38.70 2.40
4439 8718 7.125792 AGATACTGGTACAATTCCGATCTTT 57.874 36.000 0.00 0.00 38.70 2.52
4440 8719 7.210873 AGATACTGGTACAATTCCGATCTTTC 58.789 38.462 0.00 0.00 38.70 2.62
4441 8720 4.514401 ACTGGTACAATTCCGATCTTTCC 58.486 43.478 0.00 0.00 38.70 3.13
4442 8721 4.225267 ACTGGTACAATTCCGATCTTTCCT 59.775 41.667 0.00 0.00 38.70 3.36
4443 8722 5.174037 TGGTACAATTCCGATCTTTCCTT 57.826 39.130 0.00 0.00 31.92 3.36
4444 8723 5.566469 TGGTACAATTCCGATCTTTCCTTT 58.434 37.500 0.00 0.00 31.92 3.11
4446 8725 5.414765 GGTACAATTCCGATCTTTCCTTTGT 59.585 40.000 0.00 0.00 0.00 2.83
4447 8726 5.376854 ACAATTCCGATCTTTCCTTTGTG 57.623 39.130 0.00 0.00 0.00 3.33
4451 8741 7.393234 ACAATTCCGATCTTTCCTTTGTGATTA 59.607 33.333 0.00 0.00 0.00 1.75
4491 8781 1.137086 CTGGTCCTCCGACATTACAGG 59.863 57.143 0.00 0.00 41.13 4.00
4497 8787 3.021695 CCTCCGACATTACAGGTGTAGA 58.978 50.000 0.00 0.00 0.00 2.59
4608 8898 8.948853 TTTATATTTCTCAAGTCACTTTTGCG 57.051 30.769 0.00 0.00 0.00 4.85
4625 8915 0.653610 GCGTATTTTAAGAGCCGCGC 60.654 55.000 0.00 0.00 36.97 6.86
4645 8935 2.125269 ACGTCCAGGCATAACGGC 60.125 61.111 9.76 0.00 40.58 5.68
4668 8958 1.703438 GCTGCGAGGCTGTGAATGAG 61.703 60.000 0.00 0.00 0.00 2.90
4671 8961 1.153765 CGAGGCTGTGAATGAGCGA 60.154 57.895 0.00 0.00 37.32 4.93
4672 8962 1.416813 CGAGGCTGTGAATGAGCGAC 61.417 60.000 0.00 0.00 37.32 5.19
4673 8963 1.078848 AGGCTGTGAATGAGCGACC 60.079 57.895 0.00 0.00 37.32 4.79
4681 9007 0.385751 GAATGAGCGACCGGAGATCA 59.614 55.000 20.57 20.57 0.00 2.92
4687 9013 0.876342 GCGACCGGAGATCAATCACC 60.876 60.000 9.46 0.00 34.67 4.02
4688 9014 0.249489 CGACCGGAGATCAATCACCC 60.249 60.000 9.46 0.00 34.54 4.61
4690 9016 2.317040 GACCGGAGATCAATCACCCTA 58.683 52.381 9.46 0.00 34.54 3.53
4704 9030 1.614903 CACCCTACAACACTACACGGA 59.385 52.381 0.00 0.00 0.00 4.69
4707 9033 3.056322 ACCCTACAACACTACACGGAATC 60.056 47.826 0.00 0.00 0.00 2.52
4719 9045 2.433664 GGAATCGTTGCCGTCCGT 60.434 61.111 0.00 0.00 35.01 4.69
4791 9117 1.039785 TCATCCTCTGGTCAGCCGAG 61.040 60.000 0.00 0.00 37.67 4.63
4803 9129 2.184322 GCCGAGTCGCTGGATCAA 59.816 61.111 7.12 0.00 0.00 2.57
4818 9144 2.685388 GGATCAAAGCAAACCTAGCTCC 59.315 50.000 0.00 0.00 42.53 4.70
4826 9152 0.036306 AAACCTAGCTCCAACACGGG 59.964 55.000 0.00 0.00 34.36 5.28
4841 9167 2.586357 GGGCGCGAGAAGGTCATC 60.586 66.667 12.10 0.00 0.00 2.92
4846 9172 1.511305 GCGAGAAGGTCATCGTCCA 59.489 57.895 0.00 0.00 40.97 4.02
4851 9177 1.625818 AGAAGGTCATCGTCCAAGCTT 59.374 47.619 0.00 0.00 33.72 3.74
4854 9180 1.084370 GGTCATCGTCCAAGCTTCCG 61.084 60.000 0.00 0.00 0.00 4.30
4856 9182 2.125106 ATCGTCCAAGCTTCCGCC 60.125 61.111 0.00 0.00 36.60 6.13
4888 9214 2.690778 CCTTGCAGTAGTTGGCCGC 61.691 63.158 0.00 0.00 0.00 6.53
4894 9220 4.382320 GTAGTTGGCCGCCCACGA 62.382 66.667 7.03 0.00 41.97 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 5.587043 TCGGACCGATTATTATTTGTTGCTT 59.413 36.000 13.88 0.00 0.00 3.91
74 75 5.005971 CACGTCGGACCGATTATTATTTGTT 59.994 40.000 21.53 0.00 38.42 2.83
145 150 5.387649 CCGCGCTATTTATTGATTGCAAATG 60.388 40.000 1.71 0.00 37.59 2.32
181 1409 1.340568 TGTGATTTACGGACGTGGTCA 59.659 47.619 7.73 6.15 33.68 4.02
191 1419 1.663695 ATCGCCCCTTGTGATTTACG 58.336 50.000 0.00 0.00 41.42 3.18
206 1434 8.023050 AGATGTGTTTGCTATTAGATAATCGC 57.977 34.615 0.00 2.94 35.62 4.58
280 1512 2.442126 CCCCCTCCCTATTGTTTACCTC 59.558 54.545 0.00 0.00 0.00 3.85
282 1514 2.174210 GTCCCCCTCCCTATTGTTTACC 59.826 54.545 0.00 0.00 0.00 2.85
380 1632 2.413453 GGCGACTCTGATCTCAACAAAC 59.587 50.000 0.00 0.00 0.00 2.93
387 1639 0.662970 GCGATGGCGACTCTGATCTC 60.663 60.000 0.00 0.00 40.82 2.75
486 1738 5.515270 GTGCTTCCAAAAACTTTATATCGGC 59.485 40.000 0.00 0.00 0.00 5.54
568 1827 2.202479 TCGACGAGATGCAGTGCG 60.202 61.111 11.20 0.00 0.00 5.34
569 1828 2.500442 CGTCGACGAGATGCAGTGC 61.500 63.158 33.35 8.58 43.02 4.40
570 1829 1.128724 GACGTCGACGAGATGCAGTG 61.129 60.000 41.52 11.46 43.02 3.66
571 1830 1.134901 GACGTCGACGAGATGCAGT 59.865 57.895 41.52 18.88 43.02 4.40
588 1848 0.751643 TGATCTGATGGAGACGGCGA 60.752 55.000 16.62 0.00 31.75 5.54
734 2030 3.407967 GGGGGAATCACTGGCGGA 61.408 66.667 0.00 0.00 0.00 5.54
757 2053 2.932663 CGGCAAGAAAAGCAGGAGA 58.067 52.632 0.00 0.00 0.00 3.71
941 2245 3.737172 CTTTGGCGCACGGGAAGG 61.737 66.667 10.83 0.00 0.00 3.46
1236 2540 8.482429 GTCAACAAGTTCTTTTGAATGCATAAG 58.518 33.333 0.00 0.00 40.94 1.73
1251 2555 5.101628 TCAGCACAAATTGTCAACAAGTTC 58.898 37.500 5.66 0.00 41.46 3.01
1255 2559 4.809958 CCAATCAGCACAAATTGTCAACAA 59.190 37.500 0.00 0.00 40.51 2.83
1264 2568 2.289819 CCTTTGCCCAATCAGCACAAAT 60.290 45.455 0.00 0.00 40.69 2.32
1265 2569 1.070445 CCTTTGCCCAATCAGCACAAA 59.930 47.619 0.00 0.00 40.69 2.83
1267 2571 0.178967 TCCTTTGCCCAATCAGCACA 60.179 50.000 0.00 0.00 40.69 4.57
1268 2572 0.968405 TTCCTTTGCCCAATCAGCAC 59.032 50.000 0.00 0.00 40.69 4.40
1269 2573 0.968405 GTTCCTTTGCCCAATCAGCA 59.032 50.000 0.00 0.00 38.81 4.41
1270 2574 0.247460 GGTTCCTTTGCCCAATCAGC 59.753 55.000 0.00 0.00 0.00 4.26
1271 2575 1.273327 GTGGTTCCTTTGCCCAATCAG 59.727 52.381 0.00 0.00 0.00 2.90
1277 2581 0.467290 TGAGTGTGGTTCCTTTGCCC 60.467 55.000 0.00 0.00 0.00 5.36
1290 2594 3.065786 CAGCAACAGACAAATGTGAGTGT 59.934 43.478 0.00 0.00 32.52 3.55
1308 2612 9.591238 AGAAACAATCTAGACATGGGAACAGCA 62.591 40.741 11.05 0.00 39.77 4.41
1310 2614 6.176183 AGAAACAATCTAGACATGGGAACAG 58.824 40.000 11.05 0.00 39.77 3.16
1313 2617 6.013379 ACAGAGAAACAATCTAGACATGGGAA 60.013 38.462 11.05 0.00 38.96 3.97
1314 2618 5.485353 ACAGAGAAACAATCTAGACATGGGA 59.515 40.000 11.05 0.00 38.96 4.37
1315 2619 5.738909 ACAGAGAAACAATCTAGACATGGG 58.261 41.667 11.05 0.00 38.96 4.00
1352 2656 1.186200 TCCTGAGGTTGATCTCCACG 58.814 55.000 0.00 0.00 33.04 4.94
1376 2680 2.047769 TTGAGTTTACCTGCCCCCTA 57.952 50.000 0.00 0.00 0.00 3.53
1405 2709 9.934190 AACTGAATGAAAATTACAAAAATGCAC 57.066 25.926 0.00 0.00 0.00 4.57
1407 2711 9.305110 CGAACTGAATGAAAATTACAAAAATGC 57.695 29.630 0.00 0.00 0.00 3.56
1425 2731 2.752903 TCATCTCCGATGTCGAACTGAA 59.247 45.455 3.62 0.00 43.02 3.02
1426 2732 2.365582 TCATCTCCGATGTCGAACTGA 58.634 47.619 3.62 0.00 43.02 3.41
1427 2733 2.851805 TCATCTCCGATGTCGAACTG 57.148 50.000 3.62 0.00 43.02 3.16
1428 2734 2.755655 ACTTCATCTCCGATGTCGAACT 59.244 45.455 3.62 0.00 43.02 3.01
1455 2761 6.668283 ACATACAGGATTCAGTACAGGTTACT 59.332 38.462 0.00 0.00 0.00 2.24
1471 2777 8.977412 TCTACACATAATCAGAAACATACAGGA 58.023 33.333 0.00 0.00 0.00 3.86
1602 2908 7.716998 CAGGACTACATATCCAAGCAGTAAAAT 59.283 37.037 0.00 0.00 38.86 1.82
1867 3174 4.193865 CAGGTATGTCACTGCATGATTCA 58.806 43.478 0.00 0.00 40.28 2.57
1926 3233 1.348775 GGGTTAGGCCTCCATCTGCT 61.349 60.000 9.68 0.00 37.43 4.24
1947 3254 3.691049 TTTAACGCTGCCATATGAAGC 57.309 42.857 16.31 16.31 0.00 3.86
2066 3373 6.148948 TGAGTTGAACAGAAAAACAGTTGTG 58.851 36.000 0.00 0.00 0.00 3.33
2067 3374 6.325919 TGAGTTGAACAGAAAAACAGTTGT 57.674 33.333 0.00 0.00 0.00 3.32
2079 3387 9.831737 CTGAAAAATACCTATTGAGTTGAACAG 57.168 33.333 0.00 0.00 0.00 3.16
2080 3388 8.296713 GCTGAAAAATACCTATTGAGTTGAACA 58.703 33.333 0.00 0.00 0.00 3.18
2081 3389 8.515414 AGCTGAAAAATACCTATTGAGTTGAAC 58.485 33.333 0.00 0.00 0.00 3.18
2083 3391 8.635765 AAGCTGAAAAATACCTATTGAGTTGA 57.364 30.769 0.00 0.00 0.00 3.18
2117 3438 9.578576 AAGTTCTAACACCATCATATATGCATT 57.421 29.630 3.54 0.00 0.00 3.56
2138 3459 9.133627 GATGAAAGCAAAGGAATTTAGAAGTTC 57.866 33.333 0.00 0.00 0.00 3.01
2144 3465 7.596494 TGTCAGATGAAAGCAAAGGAATTTAG 58.404 34.615 0.00 0.00 0.00 1.85
2148 3469 4.461781 CCTGTCAGATGAAAGCAAAGGAAT 59.538 41.667 0.00 0.00 0.00 3.01
2202 3523 2.819608 ACATACAGCATTTCCACCACAC 59.180 45.455 0.00 0.00 0.00 3.82
2275 3596 6.998074 TGGTTAGCGGATATTGAGAAAATCAT 59.002 34.615 0.00 0.00 37.89 2.45
2288 3609 1.484653 ACAGTGCATGGTTAGCGGATA 59.515 47.619 0.00 0.00 33.85 2.59
2302 3623 1.268899 AGAAGCTGCATTCAACAGTGC 59.731 47.619 1.02 0.00 41.61 4.40
2354 3675 6.942532 TTCAAAATCATACCCACTAGCATC 57.057 37.500 0.00 0.00 0.00 3.91
2381 3702 9.167311 GGACTGACAATTCTTTGTATGTAGAAT 57.833 33.333 0.00 0.00 46.01 2.40
2383 3704 7.907389 AGGACTGACAATTCTTTGTATGTAGA 58.093 34.615 0.00 0.00 46.01 2.59
2384 3705 8.553459 AAGGACTGACAATTCTTTGTATGTAG 57.447 34.615 0.00 0.00 46.01 2.74
2398 3719 7.719193 TCATAATGAGTTCAAAAGGACTGACAA 59.281 33.333 0.00 0.00 0.00 3.18
2404 3725 8.306761 ACCAAATCATAATGAGTTCAAAAGGAC 58.693 33.333 0.00 0.00 31.77 3.85
2406 3727 8.928733 CAACCAAATCATAATGAGTTCAAAAGG 58.071 33.333 0.00 0.00 31.77 3.11
2407 3728 9.480053 ACAACCAAATCATAATGAGTTCAAAAG 57.520 29.630 0.00 0.00 31.77 2.27
2411 3732 8.175925 TGAACAACCAAATCATAATGAGTTCA 57.824 30.769 0.00 0.00 39.19 3.18
2414 3735 9.426837 CAAATGAACAACCAAATCATAATGAGT 57.573 29.630 0.00 0.00 33.60 3.41
2443 3764 5.506815 CCATTAATGGTGTTGAGCTGCATAG 60.507 44.000 24.12 0.00 43.05 2.23
2460 3781 4.141413 TGCCATGACTGAGCTACCATTAAT 60.141 41.667 0.00 0.00 0.00 1.40
2475 3796 6.426328 CCTCAATAGAGTTTCTATGCCATGAC 59.574 42.308 0.00 0.00 38.66 3.06
2517 3838 0.542805 TACGTATTTGACCCCCTGGC 59.457 55.000 0.00 0.00 33.59 4.85
2582 3903 1.968017 CGCACTGACCTGGCAATGT 60.968 57.895 0.00 0.00 0.00 2.71
2679 4002 9.346725 CCTCAAAAACTTATTGCATACTTCTTC 57.653 33.333 0.00 0.00 0.00 2.87
2682 4005 7.274250 CAGCCTCAAAAACTTATTGCATACTTC 59.726 37.037 0.00 0.00 0.00 3.01
2721 4044 2.044946 GTGCCCGGCCTTCTCAAT 60.045 61.111 7.03 0.00 0.00 2.57
2736 4059 9.655769 CTTGTTTTCGATAATGGAGATATTGTG 57.344 33.333 0.00 0.00 0.00 3.33
2845 4168 6.974932 ACAGCAACAGATGACAACTTATAG 57.025 37.500 0.00 0.00 0.00 1.31
2922 4245 2.289565 GGTTAGGGACAACATAGCAGC 58.710 52.381 0.00 0.00 0.00 5.25
2924 4247 2.238646 CAGGGTTAGGGACAACATAGCA 59.761 50.000 0.00 0.00 0.00 3.49
2925 4248 2.421529 CCAGGGTTAGGGACAACATAGC 60.422 54.545 0.00 0.00 0.00 2.97
2947 4270 7.472334 AATAGAAGCCACAATCTTCATGTTT 57.528 32.000 5.67 0.00 41.68 2.83
2980 4305 6.986817 CACTGGACAGTAGTTTAATATGGGAG 59.013 42.308 4.41 0.00 40.20 4.30
2981 4306 6.442564 ACACTGGACAGTAGTTTAATATGGGA 59.557 38.462 4.41 0.00 40.20 4.37
2983 4308 8.561738 AAACACTGGACAGTAGTTTAATATGG 57.438 34.615 20.75 4.68 40.20 2.74
2996 4323 5.763204 ACTAACCACAATAAACACTGGACAG 59.237 40.000 0.00 0.00 0.00 3.51
3012 4339 4.876107 CCATCAGATGTTACCACTAACCAC 59.124 45.833 9.64 0.00 32.52 4.16
3113 4440 0.749649 AGCTCCCATCTAAGCAGACG 59.250 55.000 0.00 0.00 41.06 4.18
3154 4481 7.039313 AGATGTACGACTATATTTCACTGCA 57.961 36.000 0.00 0.00 0.00 4.41
3168 4495 4.673441 AGCATGTGAGTAAGATGTACGAC 58.327 43.478 0.00 0.00 32.10 4.34
3169 4496 4.983671 AGCATGTGAGTAAGATGTACGA 57.016 40.909 0.00 0.00 32.10 3.43
3170 4497 8.972262 ATAATAGCATGTGAGTAAGATGTACG 57.028 34.615 0.00 0.00 32.10 3.67
3194 4521 8.656849 CGTAATCTGACAGTTTGCTTAAACTAT 58.343 33.333 8.71 0.00 40.74 2.12
3197 4524 6.077838 CCGTAATCTGACAGTTTGCTTAAAC 58.922 40.000 8.71 0.00 0.00 2.01
3238 4565 7.257722 ACAAGTACTTTGATGTCCTTTTGTTG 58.742 34.615 5.07 0.00 39.21 3.33
3239 4566 7.404671 ACAAGTACTTTGATGTCCTTTTGTT 57.595 32.000 5.07 0.00 39.21 2.83
3362 4697 1.001378 ACCGAAAGCAAGACAACATGC 60.001 47.619 0.00 0.00 40.43 4.06
3363 4698 3.354089 AACCGAAAGCAAGACAACATG 57.646 42.857 0.00 0.00 0.00 3.21
3364 4699 5.240623 TCATTAACCGAAAGCAAGACAACAT 59.759 36.000 0.00 0.00 0.00 2.71
3365 4700 4.576873 TCATTAACCGAAAGCAAGACAACA 59.423 37.500 0.00 0.00 0.00 3.33
3366 4701 4.909880 GTCATTAACCGAAAGCAAGACAAC 59.090 41.667 0.00 0.00 0.00 3.32
3367 4702 4.819630 AGTCATTAACCGAAAGCAAGACAA 59.180 37.500 0.00 0.00 0.00 3.18
3369 4704 4.712763 CAGTCATTAACCGAAAGCAAGAC 58.287 43.478 0.00 0.00 0.00 3.01
3420 4755 1.400846 CATCTGGTGCAGAACTCATGC 59.599 52.381 0.00 0.00 44.04 4.06
3435 4770 1.227380 GAGGTACAGGGCGCATCTG 60.227 63.158 22.77 22.77 38.16 2.90
3894 5232 4.694233 CAGCTGCTGGTGGCGACT 62.694 66.667 21.71 0.00 45.43 4.18
3919 5257 0.609131 AACTGGCAGAAACCGGATGG 60.609 55.000 23.66 0.00 39.59 3.51
4044 5391 8.797438 TCTACTCATGATATGATAGACACCAAC 58.203 37.037 0.00 0.00 38.85 3.77
4070 5423 7.658525 TCCATTTCCATATGTTGCTACAAAT 57.341 32.000 4.79 0.00 37.91 2.32
4071 5424 7.178274 AGTTCCATTTCCATATGTTGCTACAAA 59.822 33.333 4.79 0.00 37.91 2.83
4072 5425 6.663093 AGTTCCATTTCCATATGTTGCTACAA 59.337 34.615 4.79 0.00 37.91 2.41
4110 5464 5.542251 AGCACAAGGTTATTTACAAACCCAT 59.458 36.000 1.47 0.00 46.33 4.00
4133 5499 0.456653 CCAATCGCTCGCCCAAAAAG 60.457 55.000 0.00 0.00 0.00 2.27
4198 5594 3.726517 CTTTGTGCCGGCCACTCG 61.727 66.667 26.77 5.80 44.92 4.18
4262 5662 3.492309 CCACCAAAAGCACTGCAACATAA 60.492 43.478 3.30 0.00 0.00 1.90
4271 8535 1.898574 CGGAGCCACCAAAAGCACT 60.899 57.895 0.00 0.00 38.90 4.40
4273 8537 2.058125 TACCGGAGCCACCAAAAGCA 62.058 55.000 9.46 0.00 38.90 3.91
4290 8554 1.153881 GAGGGCGACGGACAGTTAC 60.154 63.158 0.00 0.00 0.00 2.50
4304 8568 0.108207 GCACATGGAGATGGAGAGGG 59.892 60.000 0.00 0.00 33.39 4.30
4346 8619 1.448985 TCATAAACAAGTGCTCCGGC 58.551 50.000 0.00 0.00 39.26 6.13
4347 8620 3.440173 ACAATCATAAACAAGTGCTCCGG 59.560 43.478 0.00 0.00 0.00 5.14
4348 8621 4.685169 ACAATCATAAACAAGTGCTCCG 57.315 40.909 0.00 0.00 0.00 4.63
4349 8622 4.622740 GCAACAATCATAAACAAGTGCTCC 59.377 41.667 0.00 0.00 0.00 4.70
4350 8623 4.622740 GGCAACAATCATAAACAAGTGCTC 59.377 41.667 0.00 0.00 0.00 4.26
4378 8651 2.089980 GATGACAGCAGCAACAGGAAT 58.910 47.619 0.00 0.00 0.00 3.01
4419 8695 4.225267 AGGAAAGATCGGAATTGTACCAGT 59.775 41.667 0.00 0.00 0.00 4.00
4422 8698 5.414765 ACAAAGGAAAGATCGGAATTGTACC 59.585 40.000 0.00 0.00 0.00 3.34
4446 8725 9.355916 AGCAGTGTACTACTCTAATCATAATCA 57.644 33.333 0.00 0.00 37.60 2.57
4447 8726 9.619316 CAGCAGTGTACTACTCTAATCATAATC 57.381 37.037 0.00 0.00 37.60 1.75
4451 8741 5.894393 ACCAGCAGTGTACTACTCTAATCAT 59.106 40.000 0.00 0.00 37.60 2.45
4460 8750 1.477295 GGAGGACCAGCAGTGTACTAC 59.523 57.143 0.00 0.00 35.97 2.73
4491 8781 3.485877 GCAACGCCATCATTCTTCTACAC 60.486 47.826 0.00 0.00 0.00 2.90
4518 8808 1.004745 ACCTCGGCCAAATCAGTTCAT 59.995 47.619 2.24 0.00 0.00 2.57
4608 8898 0.653610 GCGCGCGGCTCTTAAAATAC 60.654 55.000 33.06 5.61 39.11 1.89
4625 8915 2.798501 CGTTATGCCTGGACGTGCG 61.799 63.158 1.60 0.00 32.52 5.34
4656 8946 2.456119 CGGTCGCTCATTCACAGCC 61.456 63.158 0.00 0.00 32.83 4.85
4668 8958 0.876342 GGTGATTGATCTCCGGTCGC 60.876 60.000 0.00 0.00 31.65 5.19
4671 8961 2.040178 GTAGGGTGATTGATCTCCGGT 58.960 52.381 0.00 0.00 40.45 5.28
4672 8962 2.039418 TGTAGGGTGATTGATCTCCGG 58.961 52.381 0.00 0.00 40.45 5.14
4673 8963 3.118775 TGTTGTAGGGTGATTGATCTCCG 60.119 47.826 6.12 0.00 40.45 4.63
4681 9007 3.306502 CCGTGTAGTGTTGTAGGGTGATT 60.307 47.826 0.00 0.00 0.00 2.57
4687 9013 3.176708 CGATTCCGTGTAGTGTTGTAGG 58.823 50.000 0.00 0.00 0.00 3.18
4719 9045 2.904866 AAAGCCGAGCACGCCAAA 60.905 55.556 0.00 0.00 38.29 3.28
4727 9053 2.350522 TGAAGAAGATCAAAGCCGAGC 58.649 47.619 0.00 0.00 0.00 5.03
4732 9058 1.202121 GGCGCTGAAGAAGATCAAAGC 60.202 52.381 7.64 0.00 33.60 3.51
4766 9092 1.753649 CTGACCAGAGGATGACGATGT 59.246 52.381 0.00 0.00 0.00 3.06
4791 9117 1.401539 GGTTTGCTTTGATCCAGCGAC 60.402 52.381 8.95 9.46 40.45 5.19
4800 9126 2.884639 GTTGGAGCTAGGTTTGCTTTGA 59.115 45.455 0.00 0.00 41.30 2.69
4803 9129 2.230660 GTGTTGGAGCTAGGTTTGCTT 58.769 47.619 0.00 0.00 41.30 3.91
4818 9144 3.777925 CTTCTCGCGCCCGTGTTG 61.778 66.667 0.00 0.00 35.54 3.33
4826 9152 2.202623 ACGATGACCTTCTCGCGC 60.203 61.111 0.00 0.00 38.42 6.86
4837 9163 4.910956 CGGAAGCTTGGACGATGA 57.089 55.556 2.10 0.00 0.00 2.92
4856 9182 1.101331 GCAAGGATCCTGCCTTTCTG 58.899 55.000 17.02 9.09 45.85 3.02
4864 9190 2.636830 CCAACTACTGCAAGGATCCTG 58.363 52.381 17.02 10.82 39.30 3.86
4868 9194 0.392998 CGGCCAACTACTGCAAGGAT 60.393 55.000 2.24 0.00 39.30 3.24
4888 9214 2.434359 GCTTCTTCGGGTCGTGGG 60.434 66.667 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.