Multiple sequence alignment - TraesCS6A01G352200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G352200 chr6A 100.000 3350 0 0 1 3350 584913135 584909786 0.000000e+00 6187.0
1 TraesCS6A01G352200 chr6D 89.346 2722 158 62 699 3350 436717284 436714625 0.000000e+00 3299.0
2 TraesCS6A01G352200 chr6D 79.396 364 21 29 326 659 436717801 436717462 1.220000e-49 207.0
3 TraesCS6A01G352200 chr6B 88.946 2542 155 44 699 3178 659936947 659934470 0.000000e+00 3022.0
4 TraesCS6A01G352200 chr6B 92.683 164 4 2 3187 3350 659934150 659933995 2.600000e-56 230.0
5 TraesCS6A01G352200 chr6B 86.517 178 13 7 501 675 659955714 659955545 5.710000e-43 185.0
6 TraesCS6A01G352200 chr6B 91.270 126 9 2 550 675 659937242 659937119 1.600000e-38 171.0
7 TraesCS6A01G352200 chr6B 90.541 74 7 0 703 776 659955404 659955331 7.650000e-17 99.0
8 TraesCS6A01G352200 chr2B 89.911 337 31 1 1011 1344 571768278 571767942 6.640000e-117 431.0
9 TraesCS6A01G352200 chr7A 89.053 338 33 4 1011 1344 237507689 237508026 1.860000e-112 416.0
10 TraesCS6A01G352200 chr7A 79.604 505 74 20 1056 1541 105863308 105863802 5.360000e-88 335.0
11 TraesCS6A01G352200 chr7A 81.481 135 19 5 25 156 554475377 554475508 4.570000e-19 106.0
12 TraesCS6A01G352200 chr7D 79.644 506 72 23 1056 1541 101806711 101807205 5.360000e-88 335.0
13 TraesCS6A01G352200 chr7D 79.861 144 27 2 1341 1483 131269537 131269395 1.640000e-18 104.0
14 TraesCS6A01G352200 chr7B 80.346 463 65 20 1056 1493 59311518 59311979 8.960000e-86 327.0
15 TraesCS6A01G352200 chr7B 78.472 144 29 2 1341 1483 92063163 92063021 3.560000e-15 93.5
16 TraesCS6A01G352200 chr1B 88.158 152 16 1 6 157 475494679 475494828 2.660000e-41 180.0
17 TraesCS6A01G352200 chr3A 86.709 158 20 1 1 157 730344320 730344477 1.240000e-39 174.0
18 TraesCS6A01G352200 chr5A 84.153 183 23 6 1 179 557076296 557076476 4.440000e-39 172.0
19 TraesCS6A01G352200 chr5A 85.401 137 13 3 25 156 12226349 12226483 5.830000e-28 135.0
20 TraesCS6A01G352200 chr4A 90.756 119 11 0 1226 1344 737844333 737844451 3.460000e-35 159.0
21 TraesCS6A01G352200 chr4B 88.764 89 5 4 1258 1344 612329938 612330023 1.640000e-18 104.0
22 TraesCS6A01G352200 chr3B 100.000 31 0 0 1387 1417 808333305 808333275 1.300000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G352200 chr6A 584909786 584913135 3349 True 6187 6187 100.000000 1 3350 1 chr6A.!!$R1 3349
1 TraesCS6A01G352200 chr6D 436714625 436717801 3176 True 1753 3299 84.371000 326 3350 2 chr6D.!!$R1 3024
2 TraesCS6A01G352200 chr6B 659933995 659937242 3247 True 1141 3022 90.966333 550 3350 3 chr6B.!!$R1 2800

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 1085 0.030909 TCCCCCTAATCCCGCAAGTA 60.031 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2669 2942 0.175531 TGATTGGCGATCGCTCTTCA 59.824 50.0 36.25 29.54 41.6 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.587803 GTTTTTATTTGATTTGTGCGGTTTG 57.412 32.000 0.00 0.00 0.00 2.93
25 26 6.910536 TTTTATTTGATTTGTGCGGTTTGT 57.089 29.167 0.00 0.00 0.00 2.83
26 27 6.910536 TTTATTTGATTTGTGCGGTTTGTT 57.089 29.167 0.00 0.00 0.00 2.83
27 28 6.910536 TTATTTGATTTGTGCGGTTTGTTT 57.089 29.167 0.00 0.00 0.00 2.83
28 29 8.420374 TTTATTTGATTTGTGCGGTTTGTTTA 57.580 26.923 0.00 0.00 0.00 2.01
29 30 6.910536 ATTTGATTTGTGCGGTTTGTTTAA 57.089 29.167 0.00 0.00 0.00 1.52
30 31 6.721571 TTTGATTTGTGCGGTTTGTTTAAA 57.278 29.167 0.00 0.00 0.00 1.52
31 32 6.910536 TTGATTTGTGCGGTTTGTTTAAAT 57.089 29.167 0.00 0.00 0.00 1.40
32 33 6.279227 TGATTTGTGCGGTTTGTTTAAATG 57.721 33.333 0.00 0.00 0.00 2.32
33 34 6.042777 TGATTTGTGCGGTTTGTTTAAATGA 58.957 32.000 0.00 0.00 0.00 2.57
34 35 5.957910 TTTGTGCGGTTTGTTTAAATGAG 57.042 34.783 0.00 0.00 0.00 2.90
35 36 4.640789 TGTGCGGTTTGTTTAAATGAGT 57.359 36.364 0.00 0.00 0.00 3.41
36 37 4.355437 TGTGCGGTTTGTTTAAATGAGTG 58.645 39.130 0.00 0.00 0.00 3.51
37 38 3.733727 GTGCGGTTTGTTTAAATGAGTGG 59.266 43.478 0.00 0.00 0.00 4.00
38 39 3.243569 TGCGGTTTGTTTAAATGAGTGGG 60.244 43.478 0.00 0.00 0.00 4.61
39 40 3.004944 GCGGTTTGTTTAAATGAGTGGGA 59.995 43.478 0.00 0.00 0.00 4.37
40 41 4.542735 CGGTTTGTTTAAATGAGTGGGAC 58.457 43.478 0.00 0.00 0.00 4.46
41 42 4.036971 CGGTTTGTTTAAATGAGTGGGACA 59.963 41.667 0.00 0.00 0.00 4.02
42 43 5.528870 GGTTTGTTTAAATGAGTGGGACAG 58.471 41.667 0.00 0.00 41.80 3.51
43 44 5.508994 GGTTTGTTTAAATGAGTGGGACAGG 60.509 44.000 0.00 0.00 41.80 4.00
44 45 4.715534 TGTTTAAATGAGTGGGACAGGA 57.284 40.909 0.00 0.00 41.80 3.86
45 46 5.055265 TGTTTAAATGAGTGGGACAGGAA 57.945 39.130 0.00 0.00 41.80 3.36
46 47 5.450453 TGTTTAAATGAGTGGGACAGGAAA 58.550 37.500 0.00 0.00 41.80 3.13
47 48 5.894393 TGTTTAAATGAGTGGGACAGGAAAA 59.106 36.000 0.00 0.00 41.80 2.29
48 49 6.040391 TGTTTAAATGAGTGGGACAGGAAAAG 59.960 38.462 0.00 0.00 41.80 2.27
49 50 2.887151 ATGAGTGGGACAGGAAAAGG 57.113 50.000 0.00 0.00 41.80 3.11
50 51 0.771127 TGAGTGGGACAGGAAAAGGG 59.229 55.000 0.00 0.00 41.80 3.95
51 52 1.064825 GAGTGGGACAGGAAAAGGGA 58.935 55.000 0.00 0.00 41.80 4.20
52 53 0.771755 AGTGGGACAGGAAAAGGGAC 59.228 55.000 0.00 0.00 41.80 4.46
53 54 0.476771 GTGGGACAGGAAAAGGGACA 59.523 55.000 0.00 0.00 41.80 4.02
54 55 1.075536 GTGGGACAGGAAAAGGGACAT 59.924 52.381 0.00 0.00 41.80 3.06
55 56 2.307686 GTGGGACAGGAAAAGGGACATA 59.692 50.000 0.00 0.00 41.80 2.29
56 57 2.307686 TGGGACAGGAAAAGGGACATAC 59.692 50.000 0.00 0.00 0.00 2.39
57 58 2.307686 GGGACAGGAAAAGGGACATACA 59.692 50.000 0.00 0.00 0.00 2.29
58 59 3.610911 GGACAGGAAAAGGGACATACAG 58.389 50.000 0.00 0.00 0.00 2.74
59 60 3.610911 GACAGGAAAAGGGACATACAGG 58.389 50.000 0.00 0.00 0.00 4.00
60 61 2.308866 ACAGGAAAAGGGACATACAGGG 59.691 50.000 0.00 0.00 0.00 4.45
61 62 1.923148 AGGAAAAGGGACATACAGGGG 59.077 52.381 0.00 0.00 0.00 4.79
62 63 1.920351 GGAAAAGGGACATACAGGGGA 59.080 52.381 0.00 0.00 0.00 4.81
63 64 2.356844 GGAAAAGGGACATACAGGGGAC 60.357 54.545 0.00 0.00 0.00 4.46
64 65 2.053747 AAAGGGACATACAGGGGACA 57.946 50.000 0.00 0.00 0.00 4.02
65 66 2.053747 AAGGGACATACAGGGGACAA 57.946 50.000 0.00 0.00 0.00 3.18
66 67 1.584724 AGGGACATACAGGGGACAAG 58.415 55.000 0.00 0.00 0.00 3.16
67 68 0.546598 GGGACATACAGGGGACAAGG 59.453 60.000 0.00 0.00 0.00 3.61
68 69 0.546598 GGACATACAGGGGACAAGGG 59.453 60.000 0.00 0.00 0.00 3.95
69 70 1.580059 GACATACAGGGGACAAGGGA 58.420 55.000 0.00 0.00 0.00 4.20
70 71 1.209747 GACATACAGGGGACAAGGGAC 59.790 57.143 0.00 0.00 0.00 4.46
71 72 1.285280 CATACAGGGGACAAGGGACA 58.715 55.000 0.00 0.00 0.00 4.02
72 73 1.210478 CATACAGGGGACAAGGGACAG 59.790 57.143 0.00 0.00 0.00 3.51
73 74 0.490017 TACAGGGGACAAGGGACAGA 59.510 55.000 0.00 0.00 0.00 3.41
74 75 0.838122 ACAGGGGACAAGGGACAGAG 60.838 60.000 0.00 0.00 0.00 3.35
75 76 1.229658 AGGGGACAAGGGACAGAGG 60.230 63.158 0.00 0.00 0.00 3.69
76 77 1.229529 GGGGACAAGGGACAGAGGA 60.230 63.158 0.00 0.00 0.00 3.71
77 78 1.554583 GGGGACAAGGGACAGAGGAC 61.555 65.000 0.00 0.00 0.00 3.85
78 79 0.836400 GGGACAAGGGACAGAGGACA 60.836 60.000 0.00 0.00 0.00 4.02
79 80 1.056660 GGACAAGGGACAGAGGACAA 58.943 55.000 0.00 0.00 0.00 3.18
80 81 1.270893 GGACAAGGGACAGAGGACAAC 60.271 57.143 0.00 0.00 0.00 3.32
81 82 1.694696 GACAAGGGACAGAGGACAACT 59.305 52.381 0.00 0.00 0.00 3.16
82 83 1.417890 ACAAGGGACAGAGGACAACTG 59.582 52.381 0.00 0.00 40.68 3.16
89 90 3.845781 ACAGAGGACAACTGTCACATT 57.154 42.857 11.76 0.00 43.84 2.71
90 91 3.733337 ACAGAGGACAACTGTCACATTC 58.267 45.455 11.76 4.12 43.84 2.67
91 92 3.070018 CAGAGGACAACTGTCACATTCC 58.930 50.000 11.76 0.00 46.47 3.01
92 93 2.705658 AGAGGACAACTGTCACATTCCA 59.294 45.455 11.76 0.00 46.47 3.53
93 94 3.070018 GAGGACAACTGTCACATTCCAG 58.930 50.000 11.76 0.00 46.47 3.86
94 95 2.439507 AGGACAACTGTCACATTCCAGT 59.560 45.455 11.76 0.00 46.47 4.00
98 99 1.609208 ACTGTCACATTCCAGTTGGC 58.391 50.000 0.00 0.00 38.76 4.52
99 100 1.143684 ACTGTCACATTCCAGTTGGCT 59.856 47.619 0.00 0.00 38.76 4.75
100 101 1.538512 CTGTCACATTCCAGTTGGCTG 59.461 52.381 0.00 0.00 42.22 4.85
110 111 0.527565 CAGTTGGCTGGAAAATCCGG 59.472 55.000 0.00 0.00 45.82 5.14
111 112 0.404040 AGTTGGCTGGAAAATCCGGA 59.596 50.000 6.61 6.61 45.95 5.14
112 113 1.005924 AGTTGGCTGGAAAATCCGGAT 59.994 47.619 12.38 12.38 45.95 4.18
113 114 1.134946 GTTGGCTGGAAAATCCGGATG 59.865 52.381 19.95 5.16 45.95 3.51
114 115 0.623194 TGGCTGGAAAATCCGGATGA 59.377 50.000 19.95 0.00 45.95 2.92
115 116 1.005332 TGGCTGGAAAATCCGGATGAA 59.995 47.619 19.95 1.11 45.95 2.57
116 117 2.099405 GGCTGGAAAATCCGGATGAAA 58.901 47.619 19.95 1.50 45.95 2.69
117 118 2.159240 GGCTGGAAAATCCGGATGAAAC 60.159 50.000 19.95 9.99 45.95 2.78
118 119 2.159240 GCTGGAAAATCCGGATGAAACC 60.159 50.000 19.95 18.45 45.95 3.27
119 120 2.427095 CTGGAAAATCCGGATGAAACCC 59.573 50.000 19.95 14.99 45.95 4.11
120 121 2.225142 TGGAAAATCCGGATGAAACCCA 60.225 45.455 19.95 17.31 40.17 4.51
121 122 2.829120 GGAAAATCCGGATGAAACCCAA 59.171 45.455 19.95 0.00 0.00 4.12
122 123 3.450817 GGAAAATCCGGATGAAACCCAAT 59.549 43.478 19.95 0.00 0.00 3.16
123 124 4.081142 GGAAAATCCGGATGAAACCCAATT 60.081 41.667 19.95 1.58 0.00 2.32
124 125 4.470334 AAATCCGGATGAAACCCAATTG 57.530 40.909 19.95 0.00 0.00 2.32
125 126 1.846007 TCCGGATGAAACCCAATTGG 58.154 50.000 18.21 18.21 41.37 3.16
135 136 3.512978 CCCAATTGGTTTTCAGCCG 57.487 52.632 22.91 0.47 0.00 5.52
136 137 0.037419 CCCAATTGGTTTTCAGCCGG 60.037 55.000 22.91 0.00 0.00 6.13
137 138 0.965439 CCAATTGGTTTTCAGCCGGA 59.035 50.000 16.90 0.00 0.00 5.14
138 139 1.550072 CCAATTGGTTTTCAGCCGGAT 59.450 47.619 16.90 0.00 0.00 4.18
139 140 2.609350 CAATTGGTTTTCAGCCGGATG 58.391 47.619 15.12 15.12 0.00 3.51
140 141 0.532115 ATTGGTTTTCAGCCGGATGC 59.468 50.000 16.69 0.00 41.71 3.91
141 142 1.531739 TTGGTTTTCAGCCGGATGCC 61.532 55.000 16.69 11.21 42.71 4.40
142 143 1.976474 GGTTTTCAGCCGGATGCCA 60.976 57.895 16.69 0.04 42.71 4.92
143 144 1.531739 GGTTTTCAGCCGGATGCCAA 61.532 55.000 16.69 7.50 42.71 4.52
144 145 0.532115 GTTTTCAGCCGGATGCCAAT 59.468 50.000 16.69 0.00 42.71 3.16
145 146 1.066929 GTTTTCAGCCGGATGCCAATT 60.067 47.619 16.69 0.00 42.71 2.32
146 147 2.136298 TTTCAGCCGGATGCCAATTA 57.864 45.000 16.69 0.00 42.71 1.40
147 148 1.679139 TTCAGCCGGATGCCAATTAG 58.321 50.000 16.69 0.00 42.71 1.73
148 149 0.836606 TCAGCCGGATGCCAATTAGA 59.163 50.000 16.69 0.00 42.71 2.10
149 150 0.947244 CAGCCGGATGCCAATTAGAC 59.053 55.000 6.84 0.00 42.71 2.59
150 151 0.546122 AGCCGGATGCCAATTAGACA 59.454 50.000 5.05 0.00 42.71 3.41
151 152 0.947244 GCCGGATGCCAATTAGACAG 59.053 55.000 5.05 0.00 0.00 3.51
152 153 1.747206 GCCGGATGCCAATTAGACAGT 60.747 52.381 5.05 0.00 0.00 3.55
153 154 2.213499 CCGGATGCCAATTAGACAGTC 58.787 52.381 0.00 0.00 0.00 3.51
154 155 2.213499 CGGATGCCAATTAGACAGTCC 58.787 52.381 0.00 0.00 0.00 3.85
155 156 2.576615 GGATGCCAATTAGACAGTCCC 58.423 52.381 0.00 0.00 0.00 4.46
156 157 2.173569 GGATGCCAATTAGACAGTCCCT 59.826 50.000 0.00 0.00 0.00 4.20
157 158 3.372025 GGATGCCAATTAGACAGTCCCTT 60.372 47.826 0.00 0.00 0.00 3.95
158 159 3.071874 TGCCAATTAGACAGTCCCTTG 57.928 47.619 0.00 0.00 0.00 3.61
159 160 2.375174 TGCCAATTAGACAGTCCCTTGT 59.625 45.455 0.00 0.00 0.00 3.16
160 161 3.181434 TGCCAATTAGACAGTCCCTTGTT 60.181 43.478 0.00 0.00 0.00 2.83
161 162 3.826729 GCCAATTAGACAGTCCCTTGTTT 59.173 43.478 0.00 0.00 0.00 2.83
162 163 4.280929 GCCAATTAGACAGTCCCTTGTTTT 59.719 41.667 0.00 0.00 0.00 2.43
163 164 5.221441 GCCAATTAGACAGTCCCTTGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
206 207 4.053469 GAAGCTGGTTCCATACTCTCTC 57.947 50.000 8.36 0.00 0.00 3.20
207 208 3.396685 AGCTGGTTCCATACTCTCTCT 57.603 47.619 0.00 0.00 0.00 3.10
208 209 3.295973 AGCTGGTTCCATACTCTCTCTC 58.704 50.000 0.00 0.00 0.00 3.20
209 210 3.052944 AGCTGGTTCCATACTCTCTCTCT 60.053 47.826 0.00 0.00 0.00 3.10
210 211 3.704061 GCTGGTTCCATACTCTCTCTCTT 59.296 47.826 0.00 0.00 0.00 2.85
211 212 4.161377 GCTGGTTCCATACTCTCTCTCTTT 59.839 45.833 0.00 0.00 0.00 2.52
212 213 5.337975 GCTGGTTCCATACTCTCTCTCTTTT 60.338 44.000 0.00 0.00 0.00 2.27
213 214 6.688073 TGGTTCCATACTCTCTCTCTTTTT 57.312 37.500 0.00 0.00 0.00 1.94
236 237 4.400529 TTTTTGAAAAGGAGCTGGTTCC 57.599 40.909 0.00 0.00 37.52 3.62
237 238 2.746279 TTGAAAAGGAGCTGGTTCCA 57.254 45.000 0.00 0.00 39.84 3.53
238 239 2.746279 TGAAAAGGAGCTGGTTCCAA 57.254 45.000 0.00 0.00 39.84 3.53
239 240 2.306847 TGAAAAGGAGCTGGTTCCAAC 58.693 47.619 0.00 0.00 39.84 3.77
249 250 1.944035 GGTTCCAACCGTTTCGTCC 59.056 57.895 0.00 0.00 39.66 4.79
250 251 1.509644 GGTTCCAACCGTTTCGTCCC 61.510 60.000 0.00 0.00 39.66 4.46
251 252 0.533531 GTTCCAACCGTTTCGTCCCT 60.534 55.000 0.00 0.00 0.00 4.20
252 253 0.249996 TTCCAACCGTTTCGTCCCTC 60.250 55.000 0.00 0.00 0.00 4.30
253 254 1.070105 CCAACCGTTTCGTCCCTCA 59.930 57.895 0.00 0.00 0.00 3.86
254 255 1.226030 CCAACCGTTTCGTCCCTCAC 61.226 60.000 0.00 0.00 0.00 3.51
255 256 0.531090 CAACCGTTTCGTCCCTCACA 60.531 55.000 0.00 0.00 0.00 3.58
256 257 0.178533 AACCGTTTCGTCCCTCACAA 59.821 50.000 0.00 0.00 0.00 3.33
257 258 0.531311 ACCGTTTCGTCCCTCACAAC 60.531 55.000 0.00 0.00 0.00 3.32
258 259 0.531090 CCGTTTCGTCCCTCACAACA 60.531 55.000 0.00 0.00 0.00 3.33
259 260 0.859232 CGTTTCGTCCCTCACAACAG 59.141 55.000 0.00 0.00 0.00 3.16
260 261 1.805120 CGTTTCGTCCCTCACAACAGT 60.805 52.381 0.00 0.00 0.00 3.55
261 262 1.597663 GTTTCGTCCCTCACAACAGTG 59.402 52.381 0.00 0.00 34.56 3.66
262 263 0.531974 TTCGTCCCTCACAACAGTGC 60.532 55.000 0.00 0.00 33.28 4.40
263 264 1.961277 CGTCCCTCACAACAGTGCC 60.961 63.158 0.00 0.00 33.28 5.01
264 265 1.148273 GTCCCTCACAACAGTGCCA 59.852 57.895 0.00 0.00 33.28 4.92
265 266 0.250901 GTCCCTCACAACAGTGCCAT 60.251 55.000 0.00 0.00 33.28 4.40
266 267 0.250858 TCCCTCACAACAGTGCCATG 60.251 55.000 0.00 0.00 33.28 3.66
267 268 1.582968 CCTCACAACAGTGCCATGC 59.417 57.895 0.00 0.00 33.28 4.06
268 269 0.892358 CCTCACAACAGTGCCATGCT 60.892 55.000 0.00 0.00 33.28 3.79
269 270 0.240145 CTCACAACAGTGCCATGCTG 59.760 55.000 0.00 0.00 39.67 4.41
270 271 1.174078 TCACAACAGTGCCATGCTGG 61.174 55.000 4.19 0.00 41.55 4.85
271 272 1.904865 ACAACAGTGCCATGCTGGG 60.905 57.895 4.19 0.00 38.19 4.45
279 280 4.215742 CCATGCTGGGCGGCAATG 62.216 66.667 12.47 8.63 45.68 2.82
280 281 3.142162 CATGCTGGGCGGCAATGA 61.142 61.111 12.47 0.00 45.68 2.57
281 282 2.123597 ATGCTGGGCGGCAATGAT 60.124 55.556 12.47 0.00 45.68 2.45
282 283 2.495409 ATGCTGGGCGGCAATGATG 61.495 57.895 12.47 0.00 45.68 3.07
283 284 3.908081 GCTGGGCGGCAATGATGG 61.908 66.667 12.47 0.00 0.00 3.51
284 285 2.124193 CTGGGCGGCAATGATGGA 60.124 61.111 12.47 0.00 0.00 3.41
285 286 2.440065 TGGGCGGCAATGATGGAC 60.440 61.111 12.47 0.00 0.00 4.02
286 287 2.440065 GGGCGGCAATGATGGACA 60.440 61.111 12.47 0.00 0.00 4.02
287 288 2.774799 GGGCGGCAATGATGGACAC 61.775 63.158 12.47 0.00 0.00 3.67
288 289 2.045708 GGCGGCAATGATGGACACA 61.046 57.895 3.07 0.00 0.00 3.72
289 290 1.137404 GCGGCAATGATGGACACAC 59.863 57.895 0.00 0.00 0.00 3.82
290 291 1.425031 CGGCAATGATGGACACACG 59.575 57.895 0.00 0.00 0.00 4.49
291 292 1.802636 GGCAATGATGGACACACGG 59.197 57.895 0.00 0.00 0.00 4.94
292 293 1.137404 GCAATGATGGACACACGGC 59.863 57.895 0.00 0.00 0.00 5.68
293 294 1.308069 GCAATGATGGACACACGGCT 61.308 55.000 0.00 0.00 0.00 5.52
294 295 0.729116 CAATGATGGACACACGGCTC 59.271 55.000 0.00 0.00 0.00 4.70
295 296 0.392998 AATGATGGACACACGGCTCC 60.393 55.000 0.00 0.00 0.00 4.70
296 297 1.552799 ATGATGGACACACGGCTCCA 61.553 55.000 0.00 0.00 40.92 3.86
297 298 1.741770 GATGGACACACGGCTCCAC 60.742 63.158 0.00 0.00 39.44 4.02
298 299 3.589654 ATGGACACACGGCTCCACG 62.590 63.158 0.00 0.00 39.44 4.94
312 313 4.799473 CACGCGTGCCGAGCATTG 62.799 66.667 28.16 0.00 41.91 2.82
314 315 3.185365 CGCGTGCCGAGCATTGTA 61.185 61.111 0.00 0.00 41.91 2.41
315 316 2.399611 GCGTGCCGAGCATTGTAC 59.600 61.111 1.90 0.00 41.91 2.90
316 317 2.387445 GCGTGCCGAGCATTGTACA 61.387 57.895 0.00 0.00 41.91 2.90
317 318 1.906994 GCGTGCCGAGCATTGTACAA 61.907 55.000 11.41 11.41 41.91 2.41
318 319 0.726827 CGTGCCGAGCATTGTACAAT 59.273 50.000 15.47 15.47 41.91 2.71
340 341 4.154176 TGTAGTAGTAGCAACCAAGTGGA 58.846 43.478 3.83 0.00 38.94 4.02
364 365 3.005554 AGATTCAGAATGCAGGTCAACG 58.994 45.455 0.00 0.00 34.76 4.10
365 366 1.522668 TTCAGAATGCAGGTCAACGG 58.477 50.000 0.00 0.00 34.76 4.44
368 369 0.674895 AGAATGCAGGTCAACGGAGC 60.675 55.000 0.00 0.00 41.86 4.70
384 389 2.196229 GCCTCCTCTCCGCCTAGA 59.804 66.667 0.00 0.00 0.00 2.43
385 390 1.228737 GCCTCCTCTCCGCCTAGAT 60.229 63.158 0.00 0.00 0.00 1.98
404 409 2.719354 GCCCAACGGACAACACAC 59.281 61.111 0.00 0.00 0.00 3.82
405 410 2.841160 GCCCAACGGACAACACACC 61.841 63.158 0.00 0.00 0.00 4.16
411 416 2.355797 CGGACAACACACCGTATCG 58.644 57.895 0.00 0.00 43.53 2.92
412 417 0.387622 CGGACAACACACCGTATCGT 60.388 55.000 0.00 0.00 43.53 3.73
415 420 3.111098 GGACAACACACCGTATCGTATC 58.889 50.000 0.00 0.00 0.00 2.24
418 423 3.056678 ACAACACACCGTATCGTATCCAA 60.057 43.478 0.00 0.00 0.00 3.53
419 424 3.872511 ACACACCGTATCGTATCCAAA 57.127 42.857 0.00 0.00 0.00 3.28
420 425 3.777478 ACACACCGTATCGTATCCAAAG 58.223 45.455 0.00 0.00 0.00 2.77
421 426 2.538449 CACACCGTATCGTATCCAAAGC 59.462 50.000 0.00 0.00 0.00 3.51
423 428 3.181469 ACACCGTATCGTATCCAAAGCAT 60.181 43.478 0.00 0.00 0.00 3.79
424 429 4.038282 ACACCGTATCGTATCCAAAGCATA 59.962 41.667 0.00 0.00 0.00 3.14
425 430 4.384846 CACCGTATCGTATCCAAAGCATAC 59.615 45.833 0.00 0.00 0.00 2.39
439 458 5.410924 CAAAGCATACTACAGTACTCTGCA 58.589 41.667 13.23 0.00 44.77 4.41
453 472 7.715249 ACAGTACTCTGCATTTGTTTAAGAGAA 59.285 33.333 5.07 0.00 44.77 2.87
454 473 8.725148 CAGTACTCTGCATTTGTTTAAGAGAAT 58.275 33.333 5.07 0.00 38.19 2.40
456 475 9.974750 GTACTCTGCATTTGTTTAAGAGAATAC 57.025 33.333 5.07 0.00 38.19 1.89
458 477 8.725148 ACTCTGCATTTGTTTAAGAGAATACAG 58.275 33.333 5.07 0.00 38.19 2.74
473 500 5.648572 AGAATACAGAGTACGTTACTTGGC 58.351 41.667 0.00 0.00 39.59 4.52
508 539 2.114056 TCGCGCACGTCATTAACTATC 58.886 47.619 8.75 0.00 41.18 2.08
510 541 1.189446 GCGCACGTCATTAACTATCCG 59.811 52.381 0.30 0.00 0.00 4.18
511 542 1.189446 CGCACGTCATTAACTATCCGC 59.811 52.381 0.00 0.00 0.00 5.54
512 543 2.470821 GCACGTCATTAACTATCCGCT 58.529 47.619 0.00 0.00 0.00 5.52
520 551 7.012704 ACGTCATTAACTATCCGCTAAACTAGA 59.987 37.037 0.00 0.00 0.00 2.43
553 584 3.953612 TCAATACTCAATTCCATGGCCAC 59.046 43.478 8.16 0.00 0.00 5.01
561 592 1.264749 TTCCATGGCCACGCTACTCT 61.265 55.000 8.16 0.00 0.00 3.24
568 599 1.269831 GGCCACGCTACTCTATTCCAG 60.270 57.143 0.00 0.00 0.00 3.86
571 602 2.034812 CCACGCTACTCTATTCCAGGTC 59.965 54.545 0.00 0.00 0.00 3.85
585 616 4.008933 GGTCCTCTGCAGCACGGT 62.009 66.667 9.47 0.00 0.00 4.83
588 619 4.007644 CCTCTGCAGCACGGTCCA 62.008 66.667 9.47 0.00 0.00 4.02
671 702 2.739913 CCAGCAAAAACAATGGCAGATG 59.260 45.455 0.00 0.00 0.00 2.90
673 704 2.144730 GCAAAAACAATGGCAGATGCA 58.855 42.857 7.19 0.00 44.36 3.96
674 705 2.158841 GCAAAAACAATGGCAGATGCAG 59.841 45.455 7.19 0.00 44.36 4.41
675 706 3.655486 CAAAAACAATGGCAGATGCAGA 58.345 40.909 7.19 0.00 44.36 4.26
676 707 4.250464 CAAAAACAATGGCAGATGCAGAT 58.750 39.130 7.19 0.00 44.36 2.90
678 709 2.430248 ACAATGGCAGATGCAGATGA 57.570 45.000 7.19 0.00 44.36 2.92
679 710 2.298610 ACAATGGCAGATGCAGATGAG 58.701 47.619 7.19 0.00 44.36 2.90
680 711 1.001268 CAATGGCAGATGCAGATGAGC 60.001 52.381 7.19 0.00 44.36 4.26
682 713 1.148723 GGCAGATGCAGATGAGCCT 59.851 57.895 7.19 0.00 44.36 4.58
683 714 1.167155 GGCAGATGCAGATGAGCCTG 61.167 60.000 7.19 0.00 44.36 4.85
689 720 2.271173 CAGATGAGCCTGCCTGCA 59.729 61.111 0.00 0.00 0.00 4.41
690 721 1.152943 CAGATGAGCCTGCCTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
694 725 2.827642 GAGCCTGCCTGCATGTCC 60.828 66.667 0.00 0.00 0.00 4.02
695 726 3.336568 AGCCTGCCTGCATGTCCT 61.337 61.111 0.00 0.00 0.00 3.85
697 728 1.077501 GCCTGCCTGCATGTCCTAA 60.078 57.895 0.00 0.00 0.00 2.69
780 962 3.497262 CCGCTTTAATTCCCCGACTAATC 59.503 47.826 0.00 0.00 0.00 1.75
782 964 5.510179 CCGCTTTAATTCCCCGACTAATCTA 60.510 44.000 0.00 0.00 0.00 1.98
783 965 5.404667 CGCTTTAATTCCCCGACTAATCTAC 59.595 44.000 0.00 0.00 0.00 2.59
786 968 4.684484 AATTCCCCGACTAATCTACACC 57.316 45.455 0.00 0.00 0.00 4.16
804 1000 2.125673 CCCCACACGCTAACCTCG 60.126 66.667 0.00 0.00 0.00 4.63
818 1014 4.200283 CTCGGTCGCTCTCTGCCC 62.200 72.222 0.00 0.00 38.78 5.36
827 1035 1.876156 CGCTCTCTGCCCCAATTTATC 59.124 52.381 0.00 0.00 38.78 1.75
862 1070 2.751837 CGCAAAGCTTCCCTCCCC 60.752 66.667 0.00 0.00 0.00 4.81
864 1072 2.923910 GCAAAGCTTCCCTCCCCCT 61.924 63.158 0.00 0.00 0.00 4.79
865 1073 1.571773 GCAAAGCTTCCCTCCCCCTA 61.572 60.000 0.00 0.00 0.00 3.53
866 1074 0.999712 CAAAGCTTCCCTCCCCCTAA 59.000 55.000 0.00 0.00 0.00 2.69
871 1079 1.074014 TTCCCTCCCCCTAATCCCG 60.074 63.158 0.00 0.00 0.00 5.14
873 1081 2.447765 CCTCCCCCTAATCCCGCA 60.448 66.667 0.00 0.00 0.00 5.69
874 1082 2.076184 CCTCCCCCTAATCCCGCAA 61.076 63.158 0.00 0.00 0.00 4.85
875 1083 1.451936 CTCCCCCTAATCCCGCAAG 59.548 63.158 0.00 0.00 0.00 4.01
876 1084 1.307517 TCCCCCTAATCCCGCAAGT 60.308 57.895 0.00 0.00 0.00 3.16
877 1085 0.030909 TCCCCCTAATCCCGCAAGTA 60.031 55.000 0.00 0.00 0.00 2.24
881 1089 1.474498 CCCTAATCCCGCAAGTACCAC 60.474 57.143 0.00 0.00 0.00 4.16
883 1091 1.208535 CTAATCCCGCAAGTACCACCA 59.791 52.381 0.00 0.00 0.00 4.17
884 1092 0.623723 AATCCCGCAAGTACCACCAT 59.376 50.000 0.00 0.00 0.00 3.55
885 1093 0.107214 ATCCCGCAAGTACCACCATG 60.107 55.000 0.00 0.00 0.00 3.66
888 1096 1.377202 CGCAAGTACCACCATGGCT 60.377 57.895 13.04 0.00 42.67 4.75
926 1134 1.068741 CCTTCCTTCCGGATCGTAAGG 59.931 57.143 4.15 9.21 39.58 2.69
956 1165 0.318614 GCTCTCATCCGTAGCTGCTC 60.319 60.000 4.91 0.00 33.40 4.26
970 1179 1.633852 CTGCTCGCTTGCTTGGAGTC 61.634 60.000 0.00 0.00 0.00 3.36
971 1180 1.669115 GCTCGCTTGCTTGGAGTCA 60.669 57.895 0.00 0.00 0.00 3.41
973 1182 1.740380 GCTCGCTTGCTTGGAGTCATA 60.740 52.381 0.00 0.00 0.00 2.15
975 1184 1.550524 TCGCTTGCTTGGAGTCATAGT 59.449 47.619 0.00 0.00 0.00 2.12
976 1185 2.758423 TCGCTTGCTTGGAGTCATAGTA 59.242 45.455 0.00 0.00 0.00 1.82
977 1186 3.119291 CGCTTGCTTGGAGTCATAGTAG 58.881 50.000 0.00 0.00 0.00 2.57
978 1187 3.462021 GCTTGCTTGGAGTCATAGTAGG 58.538 50.000 0.00 0.00 0.00 3.18
979 1188 3.118592 GCTTGCTTGGAGTCATAGTAGGT 60.119 47.826 0.00 0.00 0.00 3.08
980 1189 4.624125 GCTTGCTTGGAGTCATAGTAGGTT 60.624 45.833 0.00 0.00 0.00 3.50
981 1190 4.471904 TGCTTGGAGTCATAGTAGGTTG 57.528 45.455 0.00 0.00 0.00 3.77
983 1192 3.197983 GCTTGGAGTCATAGTAGGTTGGT 59.802 47.826 0.00 0.00 0.00 3.67
985 1194 2.500098 TGGAGTCATAGTAGGTTGGTGC 59.500 50.000 0.00 0.00 0.00 5.01
988 1197 1.479323 GTCATAGTAGGTTGGTGCGGA 59.521 52.381 0.00 0.00 0.00 5.54
1018 1229 1.079819 ATGAGCAACTCGTCGTGGG 60.080 57.895 0.00 0.00 32.35 4.61
1089 1300 1.539929 CCCAGCATCCTCTTCATCGTC 60.540 57.143 0.00 0.00 0.00 4.20
1275 1489 2.892425 CAGGCCTTCATCGACGCC 60.892 66.667 0.00 0.00 41.96 5.68
1677 1900 0.523072 GCAAGTTCATGTGCGTGGAT 59.477 50.000 0.00 0.00 0.00 3.41
1678 1901 1.730121 GCAAGTTCATGTGCGTGGATG 60.730 52.381 0.00 0.00 0.00 3.51
1679 1902 1.135603 CAAGTTCATGTGCGTGGATGG 60.136 52.381 0.00 0.00 0.00 3.51
1680 1903 1.137404 GTTCATGTGCGTGGATGGC 59.863 57.895 0.00 0.00 0.00 4.40
1681 1904 1.303155 TTCATGTGCGTGGATGGCA 60.303 52.632 0.00 0.00 38.25 4.92
1682 1905 0.892814 TTCATGTGCGTGGATGGCAA 60.893 50.000 0.00 0.00 42.92 4.52
1683 1906 1.153978 CATGTGCGTGGATGGCAAC 60.154 57.895 0.00 0.00 42.92 4.17
1684 1907 2.689785 ATGTGCGTGGATGGCAACG 61.690 57.895 5.86 5.86 42.92 4.10
1974 2212 3.925090 CGCTACCCGGTGATCCCC 61.925 72.222 0.00 0.00 0.00 4.81
2353 2597 1.080434 GGAGACTGCTCGTGACCAC 60.080 63.158 0.00 0.00 42.25 4.16
2358 2607 1.293179 CTGCTCGTGACCACCATCA 59.707 57.895 0.00 0.00 0.00 3.07
2373 2622 3.439825 CACCATCACCATTGTCGATCAAA 59.560 43.478 4.87 0.00 39.62 2.69
2374 2623 4.096833 CACCATCACCATTGTCGATCAAAT 59.903 41.667 4.87 0.00 39.62 2.32
2375 2624 4.336433 ACCATCACCATTGTCGATCAAATC 59.664 41.667 4.87 0.00 39.62 2.17
2376 2625 4.336153 CCATCACCATTGTCGATCAAATCA 59.664 41.667 4.87 0.00 39.62 2.57
2377 2626 5.163632 CCATCACCATTGTCGATCAAATCAA 60.164 40.000 4.87 0.00 39.62 2.57
2386 2635 3.254657 GTCGATCAAATCAAACCCCAACA 59.745 43.478 0.00 0.00 0.00 3.33
2387 2636 3.505680 TCGATCAAATCAAACCCCAACAG 59.494 43.478 0.00 0.00 0.00 3.16
2397 2647 5.020132 TCAAACCCCAACAGAAGAGAAAAA 58.980 37.500 0.00 0.00 0.00 1.94
2399 2649 3.566351 ACCCCAACAGAAGAGAAAAAGG 58.434 45.455 0.00 0.00 0.00 3.11
2405 2655 6.268566 CCAACAGAAGAGAAAAAGGAAACAG 58.731 40.000 0.00 0.00 0.00 3.16
2435 2685 9.884465 CTTTCTTTTGTTCAGTTAGTCATAAGG 57.116 33.333 0.00 0.00 0.00 2.69
2438 2688 9.793259 TCTTTTGTTCAGTTAGTCATAAGGATT 57.207 29.630 0.00 0.00 0.00 3.01
2441 2691 7.827819 TGTTCAGTTAGTCATAAGGATTTCG 57.172 36.000 0.00 0.00 0.00 3.46
2449 2699 9.152595 GTTAGTCATAAGGATTTCGTCTTCTTT 57.847 33.333 0.00 0.00 0.00 2.52
2507 2761 1.084289 GCGGCGAGAAACCTGTAAAT 58.916 50.000 12.98 0.00 0.00 1.40
2513 2771 2.671396 CGAGAAACCTGTAAATCCCACG 59.329 50.000 0.00 0.00 0.00 4.94
2519 2777 2.100916 ACCTGTAAATCCCACGAGATCG 59.899 50.000 0.00 0.00 46.33 3.69
2555 2828 2.362736 GATCAGCAGCCACTCATTTGA 58.637 47.619 0.00 0.00 0.00 2.69
2564 2837 2.606308 GCCACTCATTTGACAGTTGCTG 60.606 50.000 0.00 0.00 37.52 4.41
2583 2856 2.139917 TGTGGAGTTTTCAACCGATCG 58.860 47.619 8.51 8.51 0.00 3.69
2588 2861 3.123116 GGAGTTTTCAACCGATCGAGAAC 59.877 47.826 18.66 8.19 0.00 3.01
2624 2897 1.135315 CGACTTTTGCATGGGAGCG 59.865 57.895 0.00 0.00 37.31 5.03
2631 2904 2.976903 GCATGGGAGCGGCAGATC 60.977 66.667 1.45 0.00 0.00 2.75
2636 2909 4.959596 GGAGCGGCAGATCGGAGC 62.960 72.222 1.45 1.26 32.66 4.70
2676 2950 2.010497 GGATTCTTTCCGGTGAAGAGC 58.990 52.381 17.92 14.87 34.84 4.09
2796 3088 1.526917 GAGCAAGTGCCACCACAGT 60.527 57.895 0.00 0.00 44.53 3.55
2797 3089 1.510480 GAGCAAGTGCCACCACAGTC 61.510 60.000 0.00 0.00 44.53 3.51
2799 3091 1.149174 CAAGTGCCACCACAGTCCT 59.851 57.895 0.00 0.00 44.53 3.85
2800 3092 0.886490 CAAGTGCCACCACAGTCCTC 60.886 60.000 0.00 0.00 44.53 3.71
2831 3123 2.987752 CGGTAGCTTCCGGGAATTC 58.012 57.895 22.88 5.55 45.88 2.17
2855 3147 2.881352 GTCGCTTTCGCTCCTCCG 60.881 66.667 0.00 0.00 35.26 4.63
2883 3175 4.360027 CGCGCGCATATGCTGTCC 62.360 66.667 32.61 9.72 39.32 4.02
2888 3180 0.305922 GCGCATATGCTGTCCAGTTC 59.694 55.000 24.56 1.70 39.32 3.01
2931 3223 4.966787 TGGCCCCGGCTGTGAAAC 62.967 66.667 0.00 0.00 41.60 2.78
2959 3253 1.161843 TCAACGCGGATTTTTCTCCC 58.838 50.000 12.47 0.00 31.04 4.30
2974 3268 1.680522 CTCCCGTCATCACCTCCAGG 61.681 65.000 0.00 0.00 42.17 4.45
2979 3273 1.134965 CGTCATCACCTCCAGGAAGAC 60.135 57.143 0.00 1.29 38.94 3.01
2980 3274 1.208293 GTCATCACCTCCAGGAAGACC 59.792 57.143 0.00 0.00 38.94 3.85
3012 3306 2.943345 GCTGTGGCACTGAACGACG 61.943 63.158 26.11 0.00 38.54 5.12
3019 3313 2.019951 CACTGAACGACGGAACCGG 61.020 63.158 17.44 0.00 44.69 5.28
3074 3368 3.632145 AGTTTTGGACTGGTGTTCATGTC 59.368 43.478 0.00 0.00 37.17 3.06
3124 3418 2.096013 GGCGATTCAGAAGTTTACCAGC 59.904 50.000 0.00 0.00 0.00 4.85
3168 3462 2.731571 GGGCCTGGCGATCTGTACA 61.732 63.158 13.40 0.00 0.00 2.90
3169 3463 1.521681 GGCCTGGCGATCTGTACAC 60.522 63.158 13.40 0.00 0.00 2.90
3178 3472 3.487711 GGCGATCTGTACACTGTACTCTG 60.488 52.174 18.16 9.87 0.00 3.35
3185 3479 5.302059 TCTGTACACTGTACTCTGCTCTTTT 59.698 40.000 18.16 0.00 0.00 2.27
3223 3832 1.989430 ATTTTAATGCAACCACGCCG 58.011 45.000 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.183433 ACAAACCGCACAAATCAAATAAAAAC 58.817 30.769 0.00 0.00 0.00 2.43
1 2 7.308782 ACAAACCGCACAAATCAAATAAAAA 57.691 28.000 0.00 0.00 0.00 1.94
2 3 6.910536 ACAAACCGCACAAATCAAATAAAA 57.089 29.167 0.00 0.00 0.00 1.52
3 4 6.910536 AACAAACCGCACAAATCAAATAAA 57.089 29.167 0.00 0.00 0.00 1.40
4 5 6.910536 AAACAAACCGCACAAATCAAATAA 57.089 29.167 0.00 0.00 0.00 1.40
5 6 8.420374 TTTAAACAAACCGCACAAATCAAATA 57.580 26.923 0.00 0.00 0.00 1.40
6 7 6.910536 TTAAACAAACCGCACAAATCAAAT 57.089 29.167 0.00 0.00 0.00 2.32
7 8 6.721571 TTTAAACAAACCGCACAAATCAAA 57.278 29.167 0.00 0.00 0.00 2.69
8 9 6.535150 TCATTTAAACAAACCGCACAAATCAA 59.465 30.769 0.00 0.00 0.00 2.57
9 10 6.042777 TCATTTAAACAAACCGCACAAATCA 58.957 32.000 0.00 0.00 0.00 2.57
10 11 6.200097 ACTCATTTAAACAAACCGCACAAATC 59.800 34.615 0.00 0.00 0.00 2.17
11 12 6.019156 CACTCATTTAAACAAACCGCACAAAT 60.019 34.615 0.00 0.00 0.00 2.32
12 13 5.289675 CACTCATTTAAACAAACCGCACAAA 59.710 36.000 0.00 0.00 0.00 2.83
13 14 4.800993 CACTCATTTAAACAAACCGCACAA 59.199 37.500 0.00 0.00 0.00 3.33
14 15 4.355437 CACTCATTTAAACAAACCGCACA 58.645 39.130 0.00 0.00 0.00 4.57
15 16 3.733727 CCACTCATTTAAACAAACCGCAC 59.266 43.478 0.00 0.00 0.00 5.34
16 17 3.243569 CCCACTCATTTAAACAAACCGCA 60.244 43.478 0.00 0.00 0.00 5.69
17 18 3.004944 TCCCACTCATTTAAACAAACCGC 59.995 43.478 0.00 0.00 0.00 5.68
18 19 4.036971 TGTCCCACTCATTTAAACAAACCG 59.963 41.667 0.00 0.00 0.00 4.44
19 20 5.508994 CCTGTCCCACTCATTTAAACAAACC 60.509 44.000 0.00 0.00 0.00 3.27
20 21 5.300792 TCCTGTCCCACTCATTTAAACAAAC 59.699 40.000 0.00 0.00 0.00 2.93
21 22 5.450453 TCCTGTCCCACTCATTTAAACAAA 58.550 37.500 0.00 0.00 0.00 2.83
22 23 5.055265 TCCTGTCCCACTCATTTAAACAA 57.945 39.130 0.00 0.00 0.00 2.83
23 24 4.715534 TCCTGTCCCACTCATTTAAACA 57.284 40.909 0.00 0.00 0.00 2.83
24 25 6.399639 TTTTCCTGTCCCACTCATTTAAAC 57.600 37.500 0.00 0.00 0.00 2.01
25 26 5.538433 CCTTTTCCTGTCCCACTCATTTAAA 59.462 40.000 0.00 0.00 0.00 1.52
26 27 5.076873 CCTTTTCCTGTCCCACTCATTTAA 58.923 41.667 0.00 0.00 0.00 1.52
27 28 4.508405 CCCTTTTCCTGTCCCACTCATTTA 60.508 45.833 0.00 0.00 0.00 1.40
28 29 3.500343 CCTTTTCCTGTCCCACTCATTT 58.500 45.455 0.00 0.00 0.00 2.32
29 30 2.225117 CCCTTTTCCTGTCCCACTCATT 60.225 50.000 0.00 0.00 0.00 2.57
30 31 1.355720 CCCTTTTCCTGTCCCACTCAT 59.644 52.381 0.00 0.00 0.00 2.90
31 32 0.771127 CCCTTTTCCTGTCCCACTCA 59.229 55.000 0.00 0.00 0.00 3.41
32 33 1.064825 TCCCTTTTCCTGTCCCACTC 58.935 55.000 0.00 0.00 0.00 3.51
33 34 0.771755 GTCCCTTTTCCTGTCCCACT 59.228 55.000 0.00 0.00 0.00 4.00
34 35 0.476771 TGTCCCTTTTCCTGTCCCAC 59.523 55.000 0.00 0.00 0.00 4.61
35 36 1.455822 ATGTCCCTTTTCCTGTCCCA 58.544 50.000 0.00 0.00 0.00 4.37
36 37 2.307686 TGTATGTCCCTTTTCCTGTCCC 59.692 50.000 0.00 0.00 0.00 4.46
37 38 3.610911 CTGTATGTCCCTTTTCCTGTCC 58.389 50.000 0.00 0.00 0.00 4.02
38 39 3.610911 CCTGTATGTCCCTTTTCCTGTC 58.389 50.000 0.00 0.00 0.00 3.51
39 40 2.308866 CCCTGTATGTCCCTTTTCCTGT 59.691 50.000 0.00 0.00 0.00 4.00
40 41 2.357154 CCCCTGTATGTCCCTTTTCCTG 60.357 54.545 0.00 0.00 0.00 3.86
41 42 1.923148 CCCCTGTATGTCCCTTTTCCT 59.077 52.381 0.00 0.00 0.00 3.36
42 43 1.920351 TCCCCTGTATGTCCCTTTTCC 59.080 52.381 0.00 0.00 0.00 3.13
43 44 2.307686 TGTCCCCTGTATGTCCCTTTTC 59.692 50.000 0.00 0.00 0.00 2.29
44 45 2.354328 TGTCCCCTGTATGTCCCTTTT 58.646 47.619 0.00 0.00 0.00 2.27
45 46 2.053747 TGTCCCCTGTATGTCCCTTT 57.946 50.000 0.00 0.00 0.00 3.11
46 47 1.916181 CTTGTCCCCTGTATGTCCCTT 59.084 52.381 0.00 0.00 0.00 3.95
47 48 1.584724 CTTGTCCCCTGTATGTCCCT 58.415 55.000 0.00 0.00 0.00 4.20
48 49 0.546598 CCTTGTCCCCTGTATGTCCC 59.453 60.000 0.00 0.00 0.00 4.46
49 50 0.546598 CCCTTGTCCCCTGTATGTCC 59.453 60.000 0.00 0.00 0.00 4.02
50 51 1.209747 GTCCCTTGTCCCCTGTATGTC 59.790 57.143 0.00 0.00 0.00 3.06
51 52 1.286248 GTCCCTTGTCCCCTGTATGT 58.714 55.000 0.00 0.00 0.00 2.29
52 53 1.210478 CTGTCCCTTGTCCCCTGTATG 59.790 57.143 0.00 0.00 0.00 2.39
53 54 1.080498 TCTGTCCCTTGTCCCCTGTAT 59.920 52.381 0.00 0.00 0.00 2.29
54 55 0.490017 TCTGTCCCTTGTCCCCTGTA 59.510 55.000 0.00 0.00 0.00 2.74
55 56 0.838122 CTCTGTCCCTTGTCCCCTGT 60.838 60.000 0.00 0.00 0.00 4.00
56 57 1.557269 CCTCTGTCCCTTGTCCCCTG 61.557 65.000 0.00 0.00 0.00 4.45
57 58 1.229658 CCTCTGTCCCTTGTCCCCT 60.230 63.158 0.00 0.00 0.00 4.79
58 59 1.229529 TCCTCTGTCCCTTGTCCCC 60.230 63.158 0.00 0.00 0.00 4.81
59 60 0.836400 TGTCCTCTGTCCCTTGTCCC 60.836 60.000 0.00 0.00 0.00 4.46
60 61 1.056660 TTGTCCTCTGTCCCTTGTCC 58.943 55.000 0.00 0.00 0.00 4.02
61 62 1.694696 AGTTGTCCTCTGTCCCTTGTC 59.305 52.381 0.00 0.00 0.00 3.18
62 63 1.417890 CAGTTGTCCTCTGTCCCTTGT 59.582 52.381 0.00 0.00 0.00 3.16
63 64 1.417890 ACAGTTGTCCTCTGTCCCTTG 59.582 52.381 0.00 0.00 41.52 3.61
64 65 1.807814 ACAGTTGTCCTCTGTCCCTT 58.192 50.000 0.00 0.00 41.52 3.95
65 66 3.560226 ACAGTTGTCCTCTGTCCCT 57.440 52.632 0.00 0.00 41.52 4.20
69 70 3.495100 GGAATGTGACAGTTGTCCTCTGT 60.495 47.826 9.60 0.00 46.86 3.41
70 71 3.070018 GGAATGTGACAGTTGTCCTCTG 58.930 50.000 9.60 0.00 44.15 3.35
71 72 2.705658 TGGAATGTGACAGTTGTCCTCT 59.294 45.455 9.60 0.00 44.15 3.69
72 73 3.070018 CTGGAATGTGACAGTTGTCCTC 58.930 50.000 9.60 4.22 44.15 3.71
73 74 2.439507 ACTGGAATGTGACAGTTGTCCT 59.560 45.455 9.60 0.00 45.03 3.85
74 75 2.851195 ACTGGAATGTGACAGTTGTCC 58.149 47.619 9.60 0.00 45.03 4.02
80 81 1.538512 CAGCCAACTGGAATGTGACAG 59.461 52.381 0.00 0.00 40.48 3.51
81 82 1.608055 CAGCCAACTGGAATGTGACA 58.392 50.000 0.00 0.00 40.48 3.58
91 92 0.527565 CCGGATTTTCCAGCCAACTG 59.472 55.000 0.00 0.00 44.05 3.16
92 93 0.404040 TCCGGATTTTCCAGCCAACT 59.596 50.000 0.00 0.00 35.91 3.16
93 94 1.134946 CATCCGGATTTTCCAGCCAAC 59.865 52.381 16.19 0.00 35.91 3.77
94 95 1.005332 TCATCCGGATTTTCCAGCCAA 59.995 47.619 16.19 0.00 35.91 4.52
95 96 0.623194 TCATCCGGATTTTCCAGCCA 59.377 50.000 16.19 0.00 35.91 4.75
96 97 1.762708 TTCATCCGGATTTTCCAGCC 58.237 50.000 16.19 0.00 35.91 4.85
97 98 2.159240 GGTTTCATCCGGATTTTCCAGC 60.159 50.000 16.19 3.31 35.91 4.85
98 99 2.427095 GGGTTTCATCCGGATTTTCCAG 59.573 50.000 16.19 2.01 35.91 3.86
99 100 2.225142 TGGGTTTCATCCGGATTTTCCA 60.225 45.455 16.19 14.91 35.91 3.53
100 101 2.452505 TGGGTTTCATCCGGATTTTCC 58.547 47.619 16.19 14.30 0.00 3.13
101 102 4.736126 ATTGGGTTTCATCCGGATTTTC 57.264 40.909 16.19 5.70 0.00 2.29
102 103 4.323409 CCAATTGGGTTTCATCCGGATTTT 60.323 41.667 16.19 0.00 0.00 1.82
103 104 3.197549 CCAATTGGGTTTCATCCGGATTT 59.802 43.478 16.19 0.00 0.00 2.17
104 105 2.765699 CCAATTGGGTTTCATCCGGATT 59.234 45.455 16.19 0.00 0.00 3.01
105 106 2.387757 CCAATTGGGTTTCATCCGGAT 58.612 47.619 17.36 12.38 0.00 4.18
106 107 1.846007 CCAATTGGGTTTCATCCGGA 58.154 50.000 17.36 6.61 0.00 5.14
117 118 0.037419 CCGGCTGAAAACCAATTGGG 60.037 55.000 27.89 10.38 44.81 4.12
118 119 0.965439 TCCGGCTGAAAACCAATTGG 59.035 50.000 23.31 23.31 42.17 3.16
119 120 2.609350 CATCCGGCTGAAAACCAATTG 58.391 47.619 0.00 0.00 0.00 2.32
120 121 1.066929 GCATCCGGCTGAAAACCAATT 60.067 47.619 10.06 0.00 40.25 2.32
121 122 0.532115 GCATCCGGCTGAAAACCAAT 59.468 50.000 10.06 0.00 40.25 3.16
122 123 1.531739 GGCATCCGGCTGAAAACCAA 61.532 55.000 10.06 0.00 44.01 3.67
123 124 1.976474 GGCATCCGGCTGAAAACCA 60.976 57.895 10.06 0.00 44.01 3.67
124 125 1.531739 TTGGCATCCGGCTGAAAACC 61.532 55.000 10.06 0.80 44.01 3.27
125 126 0.532115 ATTGGCATCCGGCTGAAAAC 59.468 50.000 10.06 0.00 44.01 2.43
126 127 1.265236 AATTGGCATCCGGCTGAAAA 58.735 45.000 10.06 2.42 44.01 2.29
127 128 2.023673 CTAATTGGCATCCGGCTGAAA 58.976 47.619 10.06 2.81 44.01 2.69
128 129 1.211703 TCTAATTGGCATCCGGCTGAA 59.788 47.619 10.06 0.00 44.01 3.02
129 130 0.836606 TCTAATTGGCATCCGGCTGA 59.163 50.000 10.06 0.00 44.01 4.26
130 131 0.947244 GTCTAATTGGCATCCGGCTG 59.053 55.000 0.00 0.00 44.01 4.85
131 132 0.546122 TGTCTAATTGGCATCCGGCT 59.454 50.000 0.00 0.00 44.01 5.52
132 133 0.947244 CTGTCTAATTGGCATCCGGC 59.053 55.000 0.00 0.00 43.74 6.13
133 134 2.213499 GACTGTCTAATTGGCATCCGG 58.787 52.381 0.00 0.00 0.00 5.14
134 135 2.213499 GGACTGTCTAATTGGCATCCG 58.787 52.381 7.85 0.00 0.00 4.18
135 136 2.173569 AGGGACTGTCTAATTGGCATCC 59.826 50.000 7.85 0.00 37.18 3.51
136 137 3.567478 AGGGACTGTCTAATTGGCATC 57.433 47.619 7.85 0.00 37.18 3.91
137 138 3.010584 ACAAGGGACTGTCTAATTGGCAT 59.989 43.478 17.72 2.65 40.86 4.40
138 139 2.375174 ACAAGGGACTGTCTAATTGGCA 59.625 45.455 17.72 0.00 40.86 4.92
139 140 3.073274 ACAAGGGACTGTCTAATTGGC 57.927 47.619 17.72 0.00 40.86 4.52
140 141 6.405278 AAAAACAAGGGACTGTCTAATTGG 57.595 37.500 17.72 0.00 40.86 3.16
173 174 3.391382 AGCTTCCTTCCGGGTCCG 61.391 66.667 0.00 1.86 39.44 4.79
174 175 2.269241 CAGCTTCCTTCCGGGTCC 59.731 66.667 0.00 0.00 36.25 4.46
175 176 2.125766 AACCAGCTTCCTTCCGGGTC 62.126 60.000 0.00 0.00 36.25 4.46
176 177 2.125766 GAACCAGCTTCCTTCCGGGT 62.126 60.000 0.00 0.00 36.25 5.28
177 178 1.377333 GAACCAGCTTCCTTCCGGG 60.377 63.158 0.00 0.00 0.00 5.73
178 179 1.377333 GGAACCAGCTTCCTTCCGG 60.377 63.158 0.00 0.00 44.90 5.14
179 180 4.303257 GGAACCAGCTTCCTTCCG 57.697 61.111 0.00 0.00 44.90 4.30
185 186 3.704061 AGAGAGAGTATGGAACCAGCTTC 59.296 47.826 0.00 0.00 0.00 3.86
186 187 3.704061 GAGAGAGAGTATGGAACCAGCTT 59.296 47.826 0.00 0.00 0.00 3.74
187 188 3.052944 AGAGAGAGAGTATGGAACCAGCT 60.053 47.826 0.00 0.45 0.00 4.24
188 189 3.295973 AGAGAGAGAGTATGGAACCAGC 58.704 50.000 0.00 0.00 0.00 4.85
189 190 5.930837 AAAGAGAGAGAGTATGGAACCAG 57.069 43.478 0.00 0.00 0.00 4.00
190 191 6.688073 AAAAAGAGAGAGAGTATGGAACCA 57.312 37.500 0.00 0.00 0.00 3.67
215 216 3.772025 TGGAACCAGCTCCTTTTCAAAAA 59.228 39.130 0.00 0.00 36.35 1.94
216 217 3.370104 TGGAACCAGCTCCTTTTCAAAA 58.630 40.909 0.00 0.00 36.35 2.44
217 218 3.025322 TGGAACCAGCTCCTTTTCAAA 57.975 42.857 0.00 0.00 36.35 2.69
218 219 2.693074 GTTGGAACCAGCTCCTTTTCAA 59.307 45.455 0.57 0.00 36.35 2.69
219 220 2.306847 GTTGGAACCAGCTCCTTTTCA 58.693 47.619 0.57 0.00 36.35 2.69
231 232 1.509644 GGGACGAAACGGTTGGAACC 61.510 60.000 0.90 5.02 45.76 3.62
232 233 0.533531 AGGGACGAAACGGTTGGAAC 60.534 55.000 0.90 0.00 0.00 3.62
233 234 0.249996 GAGGGACGAAACGGTTGGAA 60.250 55.000 0.90 0.00 0.00 3.53
234 235 1.368579 GAGGGACGAAACGGTTGGA 59.631 57.895 0.90 0.00 0.00 3.53
235 236 1.070105 TGAGGGACGAAACGGTTGG 59.930 57.895 0.00 0.00 0.00 3.77
236 237 0.531090 TGTGAGGGACGAAACGGTTG 60.531 55.000 0.00 0.00 0.00 3.77
237 238 0.178533 TTGTGAGGGACGAAACGGTT 59.821 50.000 0.00 0.00 0.00 4.44
238 239 0.531311 GTTGTGAGGGACGAAACGGT 60.531 55.000 0.00 0.00 0.00 4.83
239 240 0.531090 TGTTGTGAGGGACGAAACGG 60.531 55.000 0.00 0.00 0.00 4.44
240 241 0.859232 CTGTTGTGAGGGACGAAACG 59.141 55.000 0.00 0.00 0.00 3.60
241 242 1.597663 CACTGTTGTGAGGGACGAAAC 59.402 52.381 0.00 0.00 46.55 2.78
242 243 1.948104 CACTGTTGTGAGGGACGAAA 58.052 50.000 0.00 0.00 46.55 3.46
243 244 0.531974 GCACTGTTGTGAGGGACGAA 60.532 55.000 0.00 0.00 46.55 3.85
244 245 1.069090 GCACTGTTGTGAGGGACGA 59.931 57.895 0.00 0.00 46.55 4.20
245 246 1.961277 GGCACTGTTGTGAGGGACG 60.961 63.158 0.00 0.00 46.55 4.79
246 247 0.250901 ATGGCACTGTTGTGAGGGAC 60.251 55.000 0.00 0.00 46.55 4.46
247 248 0.250858 CATGGCACTGTTGTGAGGGA 60.251 55.000 0.00 0.00 46.55 4.20
248 249 1.870055 GCATGGCACTGTTGTGAGGG 61.870 60.000 0.00 0.00 46.55 4.30
249 250 0.892358 AGCATGGCACTGTTGTGAGG 60.892 55.000 0.00 0.00 46.55 3.86
250 251 0.240145 CAGCATGGCACTGTTGTGAG 59.760 55.000 0.00 0.00 46.55 3.51
251 252 2.333291 CAGCATGGCACTGTTGTGA 58.667 52.632 0.00 0.00 46.55 3.58
252 253 4.957266 CAGCATGGCACTGTTGTG 57.043 55.556 0.00 0.00 46.37 3.33
263 264 2.495409 ATCATTGCCGCCCAGCATG 61.495 57.895 0.00 0.00 43.64 4.06
264 265 2.123597 ATCATTGCCGCCCAGCAT 60.124 55.556 0.00 0.00 43.64 3.79
265 266 3.142162 CATCATTGCCGCCCAGCA 61.142 61.111 0.00 0.00 42.17 4.41
266 267 3.908081 CCATCATTGCCGCCCAGC 61.908 66.667 0.00 0.00 0.00 4.85
267 268 2.124193 TCCATCATTGCCGCCCAG 60.124 61.111 0.00 0.00 0.00 4.45
268 269 2.440065 GTCCATCATTGCCGCCCA 60.440 61.111 0.00 0.00 0.00 5.36
269 270 2.440065 TGTCCATCATTGCCGCCC 60.440 61.111 0.00 0.00 0.00 6.13
270 271 2.045708 TGTGTCCATCATTGCCGCC 61.046 57.895 0.00 0.00 0.00 6.13
271 272 1.137404 GTGTGTCCATCATTGCCGC 59.863 57.895 0.00 0.00 0.00 6.53
272 273 1.425031 CGTGTGTCCATCATTGCCG 59.575 57.895 0.00 0.00 0.00 5.69
273 274 1.802636 CCGTGTGTCCATCATTGCC 59.197 57.895 0.00 0.00 0.00 4.52
274 275 1.137404 GCCGTGTGTCCATCATTGC 59.863 57.895 0.00 0.00 0.00 3.56
275 276 0.729116 GAGCCGTGTGTCCATCATTG 59.271 55.000 0.00 0.00 0.00 2.82
276 277 0.392998 GGAGCCGTGTGTCCATCATT 60.393 55.000 0.00 0.00 32.55 2.57
277 278 1.221840 GGAGCCGTGTGTCCATCAT 59.778 57.895 0.00 0.00 32.55 2.45
278 279 2.213513 TGGAGCCGTGTGTCCATCA 61.214 57.895 0.00 0.00 37.96 3.07
279 280 1.741770 GTGGAGCCGTGTGTCCATC 60.742 63.158 0.00 0.00 44.71 3.51
280 281 2.347490 GTGGAGCCGTGTGTCCAT 59.653 61.111 0.00 0.00 44.71 3.41
281 282 4.293648 CGTGGAGCCGTGTGTCCA 62.294 66.667 0.00 0.00 40.72 4.02
300 301 2.178474 CATTGTACAATGCTCGGCAC 57.822 50.000 30.13 0.00 43.04 5.01
309 310 7.617225 TGGTTGCTACTACTACATTGTACAAT 58.383 34.615 15.47 15.47 0.00 2.71
310 311 6.995364 TGGTTGCTACTACTACATTGTACAA 58.005 36.000 11.41 11.41 0.00 2.41
311 312 6.593268 TGGTTGCTACTACTACATTGTACA 57.407 37.500 0.00 0.00 0.00 2.90
312 313 7.063074 CACTTGGTTGCTACTACTACATTGTAC 59.937 40.741 0.00 0.00 0.00 2.90
313 314 7.094631 CACTTGGTTGCTACTACTACATTGTA 58.905 38.462 0.00 0.00 0.00 2.41
314 315 5.932303 CACTTGGTTGCTACTACTACATTGT 59.068 40.000 0.00 0.00 0.00 2.71
315 316 5.351465 CCACTTGGTTGCTACTACTACATTG 59.649 44.000 0.00 0.00 0.00 2.82
316 317 5.247564 TCCACTTGGTTGCTACTACTACATT 59.752 40.000 0.00 0.00 36.34 2.71
317 318 4.775780 TCCACTTGGTTGCTACTACTACAT 59.224 41.667 0.00 0.00 36.34 2.29
318 319 4.154176 TCCACTTGGTTGCTACTACTACA 58.846 43.478 0.00 0.00 36.34 2.74
319 320 4.796038 TCCACTTGGTTGCTACTACTAC 57.204 45.455 0.00 0.00 36.34 2.73
320 321 5.081728 TCTTCCACTTGGTTGCTACTACTA 58.918 41.667 0.00 0.00 36.34 1.82
321 322 3.901844 TCTTCCACTTGGTTGCTACTACT 59.098 43.478 0.00 0.00 36.34 2.57
322 323 4.021368 TCTCTTCCACTTGGTTGCTACTAC 60.021 45.833 0.00 0.00 36.34 2.73
323 324 4.157246 TCTCTTCCACTTGGTTGCTACTA 58.843 43.478 0.00 0.00 36.34 1.82
324 325 2.972713 TCTCTTCCACTTGGTTGCTACT 59.027 45.455 0.00 0.00 36.34 2.57
340 341 4.564782 TGACCTGCATTCTGAATCTCTT 57.435 40.909 0.00 0.00 0.00 2.85
365 366 1.901464 CTAGGCGGAGAGGAGGCTC 60.901 68.421 5.78 5.78 43.27 4.70
368 369 0.897863 CCATCTAGGCGGAGAGGAGG 60.898 65.000 5.81 1.29 28.45 4.30
384 389 1.901464 GTGTTGTCCGTTGGGCCAT 60.901 57.895 7.26 0.00 0.00 4.40
385 390 2.517402 GTGTTGTCCGTTGGGCCA 60.517 61.111 0.00 0.00 0.00 5.36
399 404 3.777478 CTTTGGATACGATACGGTGTGT 58.223 45.455 0.00 0.00 42.51 3.72
401 406 2.166870 TGCTTTGGATACGATACGGTGT 59.833 45.455 0.00 0.00 42.51 4.16
402 407 2.816689 TGCTTTGGATACGATACGGTG 58.183 47.619 0.00 0.00 42.51 4.94
404 409 4.806330 AGTATGCTTTGGATACGATACGG 58.194 43.478 0.00 0.00 42.51 4.02
405 410 6.376177 TGTAGTATGCTTTGGATACGATACG 58.624 40.000 0.00 0.00 42.51 3.06
406 411 7.368833 ACTGTAGTATGCTTTGGATACGATAC 58.631 38.462 0.00 3.77 42.51 2.24
407 412 7.520451 ACTGTAGTATGCTTTGGATACGATA 57.480 36.000 0.00 0.00 42.51 2.92
408 413 6.406692 ACTGTAGTATGCTTTGGATACGAT 57.593 37.500 0.00 0.00 42.51 3.73
410 415 6.736123 AGTACTGTAGTATGCTTTGGATACG 58.264 40.000 0.00 0.00 33.59 3.06
411 416 7.863375 CAGAGTACTGTAGTATGCTTTGGATAC 59.137 40.741 0.00 1.78 39.11 2.24
412 417 7.470147 GCAGAGTACTGTAGTATGCTTTGGATA 60.470 40.741 26.63 0.00 45.04 2.59
415 420 4.806247 GCAGAGTACTGTAGTATGCTTTGG 59.194 45.833 26.63 1.52 45.04 3.28
418 423 5.860941 ATGCAGAGTACTGTAGTATGCTT 57.139 39.130 30.84 25.09 45.04 3.91
419 424 5.860941 AATGCAGAGTACTGTAGTATGCT 57.139 39.130 30.84 19.35 45.04 3.79
420 425 5.812642 ACAAATGCAGAGTACTGTAGTATGC 59.187 40.000 26.99 26.99 45.04 3.14
421 426 7.834068 AACAAATGCAGAGTACTGTAGTATG 57.166 36.000 11.87 11.87 45.04 2.39
423 428 9.419297 CTTAAACAAATGCAGAGTACTGTAGTA 57.581 33.333 0.00 0.00 45.04 1.82
424 429 8.148351 TCTTAAACAAATGCAGAGTACTGTAGT 58.852 33.333 0.00 0.00 45.04 2.73
425 430 8.534333 TCTTAAACAAATGCAGAGTACTGTAG 57.466 34.615 0.00 0.00 45.04 2.74
439 458 9.924650 ACGTACTCTGTATTCTCTTAAACAAAT 57.075 29.630 0.00 0.00 0.00 2.32
453 472 4.142227 CCTGCCAAGTAACGTACTCTGTAT 60.142 45.833 0.00 0.00 38.26 2.29
454 473 3.192001 CCTGCCAAGTAACGTACTCTGTA 59.808 47.826 0.00 0.00 38.26 2.74
456 475 2.607187 CCTGCCAAGTAACGTACTCTG 58.393 52.381 0.00 0.00 38.26 3.35
458 477 1.337447 TGCCTGCCAAGTAACGTACTC 60.337 52.381 0.00 0.00 38.26 2.59
473 500 3.561213 CGATGCGTGCTCTGCCTG 61.561 66.667 0.00 0.00 0.00 4.85
492 523 2.470821 AGCGGATAGTTAATGACGTGC 58.529 47.619 0.00 0.00 0.00 5.34
508 539 2.380084 TTGCAGGTCTAGTTTAGCGG 57.620 50.000 0.00 0.00 0.00 5.52
510 541 4.755123 TGACTTTTGCAGGTCTAGTTTAGC 59.245 41.667 14.44 0.00 34.01 3.09
511 542 6.861065 TTGACTTTTGCAGGTCTAGTTTAG 57.139 37.500 14.44 0.00 34.01 1.85
512 543 8.154856 AGTATTGACTTTTGCAGGTCTAGTTTA 58.845 33.333 14.44 0.01 34.01 2.01
520 551 6.294731 GGAATTGAGTATTGACTTTTGCAGGT 60.295 38.462 0.00 0.00 35.45 4.00
553 584 2.554893 GAGGACCTGGAATAGAGTAGCG 59.445 54.545 0.00 0.00 0.00 4.26
561 592 0.833287 GCTGCAGAGGACCTGGAATA 59.167 55.000 20.43 0.00 42.82 1.75
568 599 3.941657 GACCGTGCTGCAGAGGACC 62.942 68.421 25.05 14.70 37.24 4.46
571 602 3.535629 TTGGACCGTGCTGCAGAGG 62.536 63.158 20.43 18.93 0.00 3.69
585 616 1.144276 TTCGGTGTGTCGCTTTGGA 59.856 52.632 0.00 0.00 0.00 3.53
588 619 1.145377 AGGTTCGGTGTGTCGCTTT 59.855 52.632 0.00 0.00 0.00 3.51
673 704 1.152943 CATGCAGGCAGGCTCATCT 60.153 57.895 0.00 0.00 34.04 2.90
674 705 1.445716 GACATGCAGGCAGGCTCATC 61.446 60.000 5.76 0.00 34.04 2.92
675 706 1.453379 GACATGCAGGCAGGCTCAT 60.453 57.895 5.76 0.00 34.04 2.90
676 707 2.045634 GACATGCAGGCAGGCTCA 60.046 61.111 5.76 0.00 34.04 4.26
678 709 1.565390 TTAGGACATGCAGGCAGGCT 61.565 55.000 5.76 0.00 34.04 4.58
679 710 1.077501 TTAGGACATGCAGGCAGGC 60.078 57.895 5.76 0.00 0.00 4.85
680 711 0.035152 TGTTAGGACATGCAGGCAGG 60.035 55.000 4.16 4.16 0.00 4.85
682 713 1.533625 GTTGTTAGGACATGCAGGCA 58.466 50.000 0.00 0.00 35.29 4.75
683 714 0.447801 CGTTGTTAGGACATGCAGGC 59.552 55.000 0.00 0.00 35.29 4.85
684 715 1.086696 CCGTTGTTAGGACATGCAGG 58.913 55.000 0.00 0.00 35.29 4.85
686 717 1.070914 TCACCGTTGTTAGGACATGCA 59.929 47.619 0.00 0.00 35.29 3.96
689 720 1.623811 AGCTCACCGTTGTTAGGACAT 59.376 47.619 0.00 0.00 35.29 3.06
690 721 1.000506 GAGCTCACCGTTGTTAGGACA 59.999 52.381 9.40 0.00 0.00 4.02
716 898 2.111043 AGGTGCGGGTCACTGTTG 59.889 61.111 0.00 0.00 44.98 3.33
786 968 2.267961 GAGGTTAGCGTGTGGGGG 59.732 66.667 0.00 0.00 0.00 5.40
846 1054 1.571773 TAGGGGGAGGGAAGCTTTGC 61.572 60.000 0.00 0.00 0.00 3.68
862 1070 1.474498 GGTGGTACTTGCGGGATTAGG 60.474 57.143 0.00 0.00 0.00 2.69
864 1072 1.277579 TGGTGGTACTTGCGGGATTA 58.722 50.000 0.00 0.00 0.00 1.75
865 1073 0.623723 ATGGTGGTACTTGCGGGATT 59.376 50.000 0.00 0.00 0.00 3.01
866 1074 0.107214 CATGGTGGTACTTGCGGGAT 60.107 55.000 0.00 0.00 0.00 3.85
871 1079 1.937546 GCAGCCATGGTGGTACTTGC 61.938 60.000 14.67 8.47 40.46 4.01
873 1081 1.000896 GGCAGCCATGGTGGTACTT 60.001 57.895 14.67 0.00 40.46 2.24
874 1082 1.574526 ATGGCAGCCATGGTGGTACT 61.575 55.000 27.14 0.00 43.39 2.73
875 1083 1.076777 ATGGCAGCCATGGTGGTAC 60.077 57.895 27.14 1.14 43.39 3.34
876 1084 3.425737 ATGGCAGCCATGGTGGTA 58.574 55.556 27.14 0.00 43.39 3.25
911 1119 1.299926 CGGCCTTACGATCCGGAAG 60.300 63.158 9.01 8.72 46.19 3.46
912 1120 1.731433 CTCGGCCTTACGATCCGGAA 61.731 60.000 9.01 0.00 42.62 4.30
956 1165 2.015736 ACTATGACTCCAAGCAAGCG 57.984 50.000 0.00 0.00 0.00 4.68
970 1179 1.480954 ACTCCGCACCAACCTACTATG 59.519 52.381 0.00 0.00 0.00 2.23
971 1180 1.861982 ACTCCGCACCAACCTACTAT 58.138 50.000 0.00 0.00 0.00 2.12
973 1182 0.893447 GTACTCCGCACCAACCTACT 59.107 55.000 0.00 0.00 0.00 2.57
975 1184 1.274167 CTTGTACTCCGCACCAACCTA 59.726 52.381 0.00 0.00 0.00 3.08
976 1185 0.034896 CTTGTACTCCGCACCAACCT 59.965 55.000 0.00 0.00 0.00 3.50
977 1186 0.953960 CCTTGTACTCCGCACCAACC 60.954 60.000 0.00 0.00 0.00 3.77
978 1187 0.034337 TCCTTGTACTCCGCACCAAC 59.966 55.000 0.00 0.00 0.00 3.77
979 1188 0.034337 GTCCTTGTACTCCGCACCAA 59.966 55.000 0.00 0.00 0.00 3.67
980 1189 1.669440 GTCCTTGTACTCCGCACCA 59.331 57.895 0.00 0.00 0.00 4.17
981 1190 1.079336 GGTCCTTGTACTCCGCACC 60.079 63.158 0.00 0.00 0.00 5.01
983 1192 0.249120 CATGGTCCTTGTACTCCGCA 59.751 55.000 0.00 0.00 0.00 5.69
985 1194 1.471676 GCTCATGGTCCTTGTACTCCG 60.472 57.143 4.76 0.00 0.00 4.63
988 1197 2.639839 AGTTGCTCATGGTCCTTGTACT 59.360 45.455 4.76 2.88 0.00 2.73
1101 1312 0.910513 CGCAGACGAAGAAGACGATG 59.089 55.000 0.00 0.00 43.93 3.84
1227 1441 1.524863 CGTCGTGGAGGTGGAAGAGT 61.525 60.000 0.00 0.00 0.00 3.24
1275 1489 0.756070 GGTAGAGGAAGACGGGGAGG 60.756 65.000 0.00 0.00 0.00 4.30
2032 2270 1.743252 CGGAGAAGCTGTCCTTGGC 60.743 63.158 12.46 0.00 32.78 4.52
2157 2398 3.157949 CCTCCTTCCTCCTCGCCC 61.158 72.222 0.00 0.00 0.00 6.13
2202 2446 4.988716 TCCACGTCGCCCCAGTCT 62.989 66.667 0.00 0.00 0.00 3.24
2353 2597 4.336153 TGATTTGATCGACAATGGTGATGG 59.664 41.667 0.00 0.00 38.36 3.51
2358 2607 4.082245 GGGTTTGATTTGATCGACAATGGT 60.082 41.667 0.00 0.00 38.36 3.55
2373 2622 4.453480 TTCTCTTCTGTTGGGGTTTGAT 57.547 40.909 0.00 0.00 0.00 2.57
2374 2623 3.943671 TTCTCTTCTGTTGGGGTTTGA 57.056 42.857 0.00 0.00 0.00 2.69
2375 2624 5.337578 TTTTTCTCTTCTGTTGGGGTTTG 57.662 39.130 0.00 0.00 0.00 2.93
2376 2625 4.405680 CCTTTTTCTCTTCTGTTGGGGTTT 59.594 41.667 0.00 0.00 0.00 3.27
2377 2626 3.960755 CCTTTTTCTCTTCTGTTGGGGTT 59.039 43.478 0.00 0.00 0.00 4.11
2386 2635 8.759481 AAGAATCTGTTTCCTTTTTCTCTTCT 57.241 30.769 0.00 0.00 34.67 2.85
2387 2636 9.457110 GAAAGAATCTGTTTCCTTTTTCTCTTC 57.543 33.333 0.00 0.00 34.67 2.87
2397 2647 8.066612 TGAACAAAAGAAAGAATCTGTTTCCT 57.933 30.769 0.00 0.00 38.79 3.36
2399 2649 8.917415 ACTGAACAAAAGAAAGAATCTGTTTC 57.083 30.769 0.00 0.00 38.79 2.78
2435 2685 3.613299 GGACGGAGAAAGAAGACGAAATC 59.387 47.826 0.00 0.00 0.00 2.17
2438 2688 2.236766 AGGACGGAGAAAGAAGACGAA 58.763 47.619 0.00 0.00 0.00 3.85
2441 2691 3.388345 ACAAGGACGGAGAAAGAAGAC 57.612 47.619 0.00 0.00 0.00 3.01
2449 2699 1.022735 GCGATCTACAAGGACGGAGA 58.977 55.000 0.00 0.00 0.00 3.71
2507 2761 1.077716 TGAGAGCGATCTCGTGGGA 60.078 57.895 24.34 4.87 44.02 4.37
2513 2771 1.337703 AGCTGATGTGAGAGCGATCTC 59.662 52.381 23.45 23.45 40.34 2.75
2519 2777 1.066757 TGATCGAGCTGATGTGAGAGC 59.933 52.381 0.90 0.00 37.47 4.09
2555 2828 2.722094 TGAAAACTCCACAGCAACTGT 58.278 42.857 0.00 0.00 46.51 3.55
2583 2856 0.942884 GGTGTTCGTCGGTGGTTCTC 60.943 60.000 0.00 0.00 0.00 2.87
2631 2904 1.164041 TGATGATGCATGCAGCTCCG 61.164 55.000 33.41 0.00 45.94 4.63
2636 2909 3.255642 TCCATGATTGATGATGCATGCAG 59.744 43.478 26.69 7.45 37.41 4.41
2669 2942 0.175531 TGATTGGCGATCGCTCTTCA 59.824 50.000 36.25 29.54 41.60 3.02
2673 2947 1.220529 TGATTGATTGGCGATCGCTC 58.779 50.000 36.25 26.66 39.83 5.03
2674 2948 1.534163 CATGATTGATTGGCGATCGCT 59.466 47.619 36.25 19.89 39.83 4.93
2675 2949 1.400629 CCATGATTGATTGGCGATCGC 60.401 52.381 31.52 31.52 39.83 4.58
2676 2950 2.606717 CCATGATTGATTGGCGATCG 57.393 50.000 11.69 11.69 39.83 3.69
2727 3001 0.603065 AAATCCCGCTTTCCAACTGC 59.397 50.000 0.00 0.00 0.00 4.40
2796 3088 2.271497 GACCGACGGAGGAGAGGA 59.729 66.667 23.38 0.00 34.73 3.71
2797 3089 3.203412 CGACCGACGGAGGAGAGG 61.203 72.222 23.38 0.00 38.46 3.69
2873 3165 0.541392 TGCCGAACTGGACAGCATAT 59.459 50.000 0.00 0.00 42.00 1.78
2883 3175 1.133253 CAGATGCGTTGCCGAACTG 59.867 57.895 0.00 0.00 35.63 3.16
2888 3180 0.807275 TCAGATCAGATGCGTTGCCG 60.807 55.000 0.00 0.00 37.07 5.69
2931 3223 1.217585 ATCCGCGTTGATCTGCATCG 61.218 55.000 4.92 0.00 41.44 3.84
2959 3253 1.134965 GTCTTCCTGGAGGTGATGACG 60.135 57.143 5.66 0.00 36.34 4.35
2974 3268 0.676151 CAGCAAGCTCCTGGGTCTTC 60.676 60.000 6.47 0.00 0.00 2.87
3012 3306 4.785453 CAGCTCTGGCCCGGTTCC 62.785 72.222 0.00 1.13 39.73 3.62
3019 3313 1.078567 CTCTGGTTCAGCTCTGGCC 60.079 63.158 0.00 0.00 39.73 5.36
3053 3347 3.380004 TGACATGAACACCAGTCCAAAAC 59.620 43.478 0.00 0.00 0.00 2.43
3074 3368 8.284693 GTCCATGAAAATTTTGAATCTTTGGTG 58.715 33.333 8.47 0.00 0.00 4.17
3124 3418 4.194640 AGTAAATGCAGCAGTGGAGTATG 58.805 43.478 0.00 0.00 0.00 2.39
3168 3462 7.527568 ACTAGTAAAAAGAGCAGAGTACAGT 57.472 36.000 0.00 0.00 0.00 3.55
3169 3463 8.704234 CAAACTAGTAAAAAGAGCAGAGTACAG 58.296 37.037 0.00 0.00 0.00 2.74
3178 3472 7.948278 TCTGACTCAAACTAGTAAAAAGAGC 57.052 36.000 0.00 0.00 0.00 4.09
3206 3815 0.669077 AACGGCGTGGTTGCATTAAA 59.331 45.000 15.70 0.00 36.28 1.52
3223 3832 0.788391 CCGTTTGACCTCGCAGTAAC 59.212 55.000 0.00 0.00 0.00 2.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.