Multiple sequence alignment - TraesCS6A01G351900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G351900 chr6A 100.000 3450 0 0 1 3450 584696471 584693022 0.000000e+00 6372.0
1 TraesCS6A01G351900 chr6A 93.215 1636 71 20 951 2566 584757957 584759572 0.000000e+00 2370.0
2 TraesCS6A01G351900 chr6A 89.474 1463 111 16 944 2384 584593385 584594826 0.000000e+00 1808.0
3 TraesCS6A01G351900 chr6A 92.843 978 46 14 1602 2566 584717354 584716388 0.000000e+00 1397.0
4 TraesCS6A01G351900 chr6A 92.578 512 22 6 951 1455 584717867 584717365 0.000000e+00 721.0
5 TraesCS6A01G351900 chr6A 79.197 274 27 16 2312 2574 584708808 584708554 2.760000e-36 163.0
6 TraesCS6A01G351900 chr6A 95.238 42 2 0 146 187 289020010 289019969 2.220000e-07 67.6
7 TraesCS6A01G351900 chr6D 91.423 1644 105 24 951 2574 436638073 436639700 0.000000e+00 2222.0
8 TraesCS6A01G351900 chr6D 88.851 1462 118 21 944 2384 436420911 436422348 0.000000e+00 1755.0
9 TraesCS6A01G351900 chr6D 89.106 872 92 3 1 871 445171846 445170977 0.000000e+00 1081.0
10 TraesCS6A01G351900 chr6D 91.869 578 31 11 953 1523 436474437 436473869 0.000000e+00 793.0
11 TraesCS6A01G351900 chr6D 88.539 349 37 3 524 872 473358081 473358426 1.480000e-113 420.0
12 TraesCS6A01G351900 chr3B 92.448 1430 87 11 951 2373 663573496 663574911 0.000000e+00 2023.0
13 TraesCS6A01G351900 chr3B 83.987 306 45 4 3051 3354 771764894 771765197 1.210000e-74 291.0
14 TraesCS6A01G351900 chr3B 80.147 272 32 17 2847 3107 72464107 72463847 2.110000e-42 183.0
15 TraesCS6A01G351900 chr3B 78.866 194 30 7 2574 2759 804748225 804748035 1.680000e-23 121.0
16 TraesCS6A01G351900 chr3B 97.872 47 1 0 2893 2939 72464130 72464084 7.940000e-12 82.4
17 TraesCS6A01G351900 chr3B 75.000 184 33 4 2572 2743 420041781 420041963 4.780000e-09 73.1
18 TraesCS6A01G351900 chr3B 89.130 46 4 1 2571 2616 139885877 139885833 4.810000e-04 56.5
19 TraesCS6A01G351900 chr3D 92.496 1426 85 9 952 2373 502158163 502159570 0.000000e+00 2021.0
20 TraesCS6A01G351900 chr3D 79.977 854 159 11 22 871 22765681 22766526 1.360000e-173 619.0
21 TraesCS6A01G351900 chr6B 91.905 1433 91 9 953 2378 659808739 659810153 0.000000e+00 1980.0
22 TraesCS6A01G351900 chr6B 89.097 642 61 5 1850 2482 659653863 659653222 0.000000e+00 789.0
23 TraesCS6A01G351900 chr4A 97.814 869 16 2 2 870 473481092 473480227 0.000000e+00 1496.0
24 TraesCS6A01G351900 chr4A 97.257 875 19 4 2 874 59280500 59281371 0.000000e+00 1478.0
25 TraesCS6A01G351900 chr1D 87.931 870 102 3 1 870 471738302 471739168 0.000000e+00 1022.0
26 TraesCS6A01G351900 chr1D 87.227 869 106 4 1 869 471742773 471743636 0.000000e+00 985.0
27 TraesCS6A01G351900 chr5B 86.927 872 110 3 1 871 643412871 643413739 0.000000e+00 976.0
28 TraesCS6A01G351900 chr5B 76.178 764 119 37 2610 3353 532855237 532854517 9.170000e-91 344.0
29 TraesCS6A01G351900 chr5A 77.098 882 182 14 2 874 649809621 649810491 3.090000e-135 492.0
30 TraesCS6A01G351900 chr5A 84.426 122 16 3 2608 2728 485866090 485866209 2.180000e-22 117.0
31 TraesCS6A01G351900 chr2D 79.188 764 115 28 2611 3354 540321853 540322592 1.110000e-134 490.0
32 TraesCS6A01G351900 chr2D 84.698 464 67 4 2893 3354 540333701 540334162 8.720000e-126 460.0
33 TraesCS6A01G351900 chr2D 80.077 522 66 21 2844 3344 130755954 130756458 1.520000e-93 353.0
34 TraesCS6A01G351900 chr7D 83.405 464 61 7 2893 3353 36500368 36499918 1.920000e-112 416.0
35 TraesCS6A01G351900 chr7D 80.117 171 31 3 2621 2790 580318707 580318539 1.300000e-24 124.0
36 TraesCS6A01G351900 chr1B 80.514 467 80 8 2893 3349 87966178 87965713 7.090000e-92 348.0
37 TraesCS6A01G351900 chrUn 76.090 619 103 26 2662 3259 433105706 433106300 7.290000e-72 281.0
38 TraesCS6A01G351900 chr2B 76.154 390 71 16 2563 2937 387203721 387203339 5.880000e-43 185.0
39 TraesCS6A01G351900 chr2B 83.465 127 20 1 2617 2743 707619288 707619413 2.180000e-22 117.0
40 TraesCS6A01G351900 chr7B 85.714 147 20 1 3205 3350 646214688 646214542 1.660000e-33 154.0
41 TraesCS6A01G351900 chr7B 78.947 171 33 3 2621 2790 647000961 647000793 2.810000e-21 113.0
42 TraesCS6A01G351900 chr3A 89.130 46 4 1 2572 2617 736466959 736466915 4.810000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G351900 chr6A 584693022 584696471 3449 True 6372.0 6372 100.0000 1 3450 1 chr6A.!!$R2 3449
1 TraesCS6A01G351900 chr6A 584757957 584759572 1615 False 2370.0 2370 93.2150 951 2566 1 chr6A.!!$F2 1615
2 TraesCS6A01G351900 chr6A 584593385 584594826 1441 False 1808.0 1808 89.4740 944 2384 1 chr6A.!!$F1 1440
3 TraesCS6A01G351900 chr6A 584716388 584717867 1479 True 1059.0 1397 92.7105 951 2566 2 chr6A.!!$R4 1615
4 TraesCS6A01G351900 chr6D 436638073 436639700 1627 False 2222.0 2222 91.4230 951 2574 1 chr6D.!!$F2 1623
5 TraesCS6A01G351900 chr6D 436420911 436422348 1437 False 1755.0 1755 88.8510 944 2384 1 chr6D.!!$F1 1440
6 TraesCS6A01G351900 chr6D 445170977 445171846 869 True 1081.0 1081 89.1060 1 871 1 chr6D.!!$R2 870
7 TraesCS6A01G351900 chr6D 436473869 436474437 568 True 793.0 793 91.8690 953 1523 1 chr6D.!!$R1 570
8 TraesCS6A01G351900 chr3B 663573496 663574911 1415 False 2023.0 2023 92.4480 951 2373 1 chr3B.!!$F2 1422
9 TraesCS6A01G351900 chr3D 502158163 502159570 1407 False 2021.0 2021 92.4960 952 2373 1 chr3D.!!$F2 1421
10 TraesCS6A01G351900 chr3D 22765681 22766526 845 False 619.0 619 79.9770 22 871 1 chr3D.!!$F1 849
11 TraesCS6A01G351900 chr6B 659808739 659810153 1414 False 1980.0 1980 91.9050 953 2378 1 chr6B.!!$F1 1425
12 TraesCS6A01G351900 chr6B 659653222 659653863 641 True 789.0 789 89.0970 1850 2482 1 chr6B.!!$R1 632
13 TraesCS6A01G351900 chr4A 473480227 473481092 865 True 1496.0 1496 97.8140 2 870 1 chr4A.!!$R1 868
14 TraesCS6A01G351900 chr4A 59280500 59281371 871 False 1478.0 1478 97.2570 2 874 1 chr4A.!!$F1 872
15 TraesCS6A01G351900 chr1D 471738302 471743636 5334 False 1003.5 1022 87.5790 1 870 2 chr1D.!!$F1 869
16 TraesCS6A01G351900 chr5B 643412871 643413739 868 False 976.0 976 86.9270 1 871 1 chr5B.!!$F1 870
17 TraesCS6A01G351900 chr5B 532854517 532855237 720 True 344.0 344 76.1780 2610 3353 1 chr5B.!!$R1 743
18 TraesCS6A01G351900 chr5A 649809621 649810491 870 False 492.0 492 77.0980 2 874 1 chr5A.!!$F2 872
19 TraesCS6A01G351900 chr2D 540321853 540322592 739 False 490.0 490 79.1880 2611 3354 1 chr2D.!!$F2 743
20 TraesCS6A01G351900 chr2D 130755954 130756458 504 False 353.0 353 80.0770 2844 3344 1 chr2D.!!$F1 500
21 TraesCS6A01G351900 chrUn 433105706 433106300 594 False 281.0 281 76.0900 2662 3259 1 chrUn.!!$F1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
941 942 0.034756 TGCACATGTGTCGCTTAGGT 59.965 50.0 26.01 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2575 6360 0.264359 AGGGGTCTGCTAGAGATGCT 59.736 55.0 0.0 0.0 31.63 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.006133 TGGTCTATGTGGGGCGCA 61.006 61.111 10.83 0.00 0.00 6.09
177 178 6.043012 TGGATTCAATGTCCCACAAAGATTTT 59.957 34.615 0.00 0.00 34.76 1.82
195 196 2.110213 GTCCTTGTGGCCGTGACA 59.890 61.111 0.00 0.00 0.00 3.58
196 197 2.110213 TCCTTGTGGCCGTGACAC 59.890 61.111 0.00 3.19 42.82 3.67
198 199 1.961277 CCTTGTGGCCGTGACACTC 60.961 63.158 10.62 0.00 42.96 3.51
207 208 0.243907 CCGTGACACTCTGGTCGATT 59.756 55.000 3.68 0.00 40.72 3.34
220 221 1.406539 GGTCGATTTGGTACGCTAGGA 59.593 52.381 0.00 0.00 0.00 2.94
243 244 3.978272 GCCATCCATGAGGCGATC 58.022 61.111 7.82 0.00 41.70 3.69
288 289 6.916387 CACATGGTTTTATCATGAGCTTCATC 59.084 38.462 6.91 0.00 43.25 2.92
297 298 4.756502 TCATGAGCTTCATCTCTGAACTG 58.243 43.478 0.00 0.00 34.28 3.16
302 303 3.055240 AGCTTCATCTCTGAACTGGAAGG 60.055 47.826 0.00 0.00 39.30 3.46
304 305 3.190383 TCATCTCTGAACTGGAAGGGA 57.810 47.619 0.00 0.00 39.30 4.20
308 309 5.726308 TCATCTCTGAACTGGAAGGGATAAA 59.274 40.000 0.00 0.00 39.30 1.40
312 313 2.025321 TGAACTGGAAGGGATAAAGGGC 60.025 50.000 0.00 0.00 39.30 5.19
313 314 1.681229 ACTGGAAGGGATAAAGGGCA 58.319 50.000 0.00 0.00 39.30 5.36
315 316 0.258774 TGGAAGGGATAAAGGGCAGC 59.741 55.000 0.00 0.00 0.00 5.25
335 336 0.251077 CAAGAGCAAAGAGGCAGGGT 60.251 55.000 0.00 0.00 35.83 4.34
351 352 4.501714 GTCGTGCCGACGCCCATA 62.502 66.667 11.11 0.00 46.56 2.74
354 355 2.203015 GTGCCGACGCCCATACAT 60.203 61.111 0.00 0.00 0.00 2.29
361 362 3.399330 CCGACGCCCATACATAGAAATT 58.601 45.455 0.00 0.00 0.00 1.82
362 363 3.813166 CCGACGCCCATACATAGAAATTT 59.187 43.478 0.00 0.00 0.00 1.82
419 420 0.253894 CATGTGGATGCAGGAGTCCA 59.746 55.000 12.86 2.53 42.03 4.02
436 437 2.204151 AGGGAAGGACAGGGGGTG 60.204 66.667 0.00 0.00 0.00 4.61
438 439 3.256960 GGAAGGACAGGGGGTGCA 61.257 66.667 0.00 0.00 40.89 4.57
439 440 2.840753 GGAAGGACAGGGGGTGCAA 61.841 63.158 0.00 0.00 40.89 4.08
468 469 0.842030 TCTGCAGGGATGAAGGTGGT 60.842 55.000 15.13 0.00 0.00 4.16
471 472 1.922447 TGCAGGGATGAAGGTGGTAAT 59.078 47.619 0.00 0.00 0.00 1.89
473 474 3.525609 TGCAGGGATGAAGGTGGTAATTA 59.474 43.478 0.00 0.00 0.00 1.40
483 484 3.555966 AGGTGGTAATTATCTTGGCAGC 58.444 45.455 0.00 0.00 0.00 5.25
504 505 3.672808 CTCTGCTCTTGTGATTGAAGGT 58.327 45.455 0.00 0.00 0.00 3.50
507 508 3.554934 TGCTCTTGTGATTGAAGGTGTT 58.445 40.909 0.00 0.00 0.00 3.32
514 515 4.250464 TGTGATTGAAGGTGTTACCGATC 58.750 43.478 0.00 0.00 44.90 3.69
530 531 2.468831 CGATCCAGCAAGTCTAGAAGC 58.531 52.381 0.00 0.00 0.00 3.86
540 541 4.554330 GCAAGTCTAGAAGCAATAGCATGC 60.554 45.833 10.51 10.51 46.78 4.06
564 565 4.577246 GCACTAGCCCTCGCCGAG 62.577 72.222 7.25 7.25 34.57 4.63
573 574 2.182030 CTCGCCGAGGACTTGGAC 59.818 66.667 6.13 0.60 36.15 4.02
590 591 5.305128 ACTTGGACATTCATCATTTTGTGGT 59.695 36.000 0.00 0.00 0.00 4.16
594 595 5.217978 ACATTCATCATTTTGTGGTTGCT 57.782 34.783 0.00 0.00 0.00 3.91
600 601 2.034053 TCATTTTGTGGTTGCTTCGGAC 59.966 45.455 0.00 0.00 0.00 4.79
621 622 2.665000 CAGCAGGTGGTGTCGGAT 59.335 61.111 0.86 0.00 38.61 4.18
626 627 1.070758 GCAGGTGGTGTCGGATATCAT 59.929 52.381 4.83 0.00 0.00 2.45
627 628 2.759191 CAGGTGGTGTCGGATATCATG 58.241 52.381 4.83 0.00 0.00 3.07
630 631 2.628178 GGTGGTGTCGGATATCATGAGA 59.372 50.000 4.83 0.00 0.00 3.27
633 634 4.038042 GTGGTGTCGGATATCATGAGAGAA 59.962 45.833 4.83 0.00 0.00 2.87
635 636 4.321601 GGTGTCGGATATCATGAGAGAAGG 60.322 50.000 4.83 0.00 0.00 3.46
639 640 2.828520 GGATATCATGAGAGAAGGCCGA 59.171 50.000 4.83 0.00 0.00 5.54
663 664 4.649692 GTCCATATGGAGCAATCATCAGT 58.350 43.478 25.17 0.00 46.49 3.41
675 676 7.095144 GGAGCAATCATCAGTGAGATAAATCTG 60.095 40.741 0.00 0.00 37.87 2.90
677 678 7.658167 AGCAATCATCAGTGAGATAAATCTGAG 59.342 37.037 0.00 0.00 39.69 3.35
680 681 7.894753 TCATCAGTGAGATAAATCTGAGAGT 57.105 36.000 0.00 0.00 39.69 3.24
685 686 8.756927 TCAGTGAGATAAATCTGAGAGTTTCAT 58.243 33.333 0.00 0.00 37.25 2.57
687 688 8.980596 AGTGAGATAAATCTGAGAGTTTCATCT 58.019 33.333 7.43 7.43 37.25 2.90
743 744 6.728200 TGCTGTTAATTATGAAGCACATAGC 58.272 36.000 11.25 3.31 41.64 2.97
758 759 6.949578 GCACATAGCTTAGCAAAATTTTGA 57.050 33.333 30.40 11.18 39.30 2.69
776 777 3.764237 TGATTAAATAGAGGTCCGGGC 57.236 47.619 0.00 0.00 0.00 6.13
782 783 2.972589 ATAGAGGTCCGGGCAGGCAT 62.973 60.000 9.07 0.00 40.77 4.40
888 889 1.338107 AAAAACTACCCCTTGCCAGC 58.662 50.000 0.00 0.00 0.00 4.85
889 890 0.541998 AAAACTACCCCTTGCCAGCC 60.542 55.000 0.00 0.00 0.00 4.85
890 891 1.725169 AAACTACCCCTTGCCAGCCA 61.725 55.000 0.00 0.00 0.00 4.75
891 892 1.509548 AACTACCCCTTGCCAGCCAT 61.510 55.000 0.00 0.00 0.00 4.40
892 893 1.152881 CTACCCCTTGCCAGCCATC 60.153 63.158 0.00 0.00 0.00 3.51
893 894 2.631012 CTACCCCTTGCCAGCCATCC 62.631 65.000 0.00 0.00 0.00 3.51
895 896 4.431131 CCCTTGCCAGCCATCCGT 62.431 66.667 0.00 0.00 0.00 4.69
897 898 2.360350 CTTGCCAGCCATCCGTGT 60.360 61.111 0.00 0.00 0.00 4.49
898 899 2.359850 TTGCCAGCCATCCGTGTC 60.360 61.111 0.00 0.00 0.00 3.67
899 900 3.918253 TTGCCAGCCATCCGTGTCC 62.918 63.158 0.00 0.00 0.00 4.02
901 902 2.124983 CCAGCCATCCGTGTCCAG 60.125 66.667 0.00 0.00 0.00 3.86
904 905 2.045926 GCCATCCGTGTCCAGCTT 60.046 61.111 0.00 0.00 0.00 3.74
905 906 2.401766 GCCATCCGTGTCCAGCTTG 61.402 63.158 0.00 0.00 0.00 4.01
906 907 1.746615 CCATCCGTGTCCAGCTTGG 60.747 63.158 0.00 0.00 39.43 3.61
908 909 0.606401 CATCCGTGTCCAGCTTGGTT 60.606 55.000 0.00 0.00 39.03 3.67
909 910 0.606401 ATCCGTGTCCAGCTTGGTTG 60.606 55.000 0.00 0.00 39.03 3.77
910 911 1.525995 CCGTGTCCAGCTTGGTTGT 60.526 57.895 0.00 0.00 39.03 3.32
911 912 1.507141 CCGTGTCCAGCTTGGTTGTC 61.507 60.000 0.00 0.00 39.03 3.18
912 913 1.831389 CGTGTCCAGCTTGGTTGTCG 61.831 60.000 0.00 0.00 39.03 4.35
913 914 1.891919 TGTCCAGCTTGGTTGTCGC 60.892 57.895 0.00 0.00 39.03 5.19
914 915 1.598130 GTCCAGCTTGGTTGTCGCT 60.598 57.895 0.00 0.00 39.03 4.93
915 916 0.320421 GTCCAGCTTGGTTGTCGCTA 60.320 55.000 0.00 0.00 39.03 4.26
916 917 0.394938 TCCAGCTTGGTTGTCGCTAA 59.605 50.000 0.00 0.00 39.03 3.09
917 918 1.003118 TCCAGCTTGGTTGTCGCTAAT 59.997 47.619 0.00 0.00 39.03 1.73
918 919 1.812571 CCAGCTTGGTTGTCGCTAATT 59.187 47.619 0.00 0.00 31.35 1.40
919 920 3.006940 CCAGCTTGGTTGTCGCTAATTA 58.993 45.455 0.00 0.00 31.35 1.40
920 921 3.181510 CCAGCTTGGTTGTCGCTAATTAC 60.182 47.826 0.00 0.00 31.35 1.89
921 922 2.671396 AGCTTGGTTGTCGCTAATTACG 59.329 45.455 0.00 2.32 31.12 3.18
922 923 2.414138 GCTTGGTTGTCGCTAATTACGT 59.586 45.455 0.00 0.00 0.00 3.57
923 924 3.723835 GCTTGGTTGTCGCTAATTACGTG 60.724 47.826 0.00 0.25 0.00 4.49
924 925 1.727880 TGGTTGTCGCTAATTACGTGC 59.272 47.619 0.00 0.00 0.00 5.34
925 926 1.727880 GGTTGTCGCTAATTACGTGCA 59.272 47.619 0.00 0.00 0.00 4.57
926 927 2.473376 GGTTGTCGCTAATTACGTGCAC 60.473 50.000 6.82 6.82 0.00 4.57
927 928 2.067414 TGTCGCTAATTACGTGCACA 57.933 45.000 18.64 0.00 0.00 4.57
928 929 2.612604 TGTCGCTAATTACGTGCACAT 58.387 42.857 18.64 3.45 0.00 3.21
929 930 2.347150 TGTCGCTAATTACGTGCACATG 59.653 45.455 18.64 3.67 0.00 3.21
930 931 2.347452 GTCGCTAATTACGTGCACATGT 59.653 45.455 18.64 10.16 0.00 3.21
931 932 2.347150 TCGCTAATTACGTGCACATGTG 59.653 45.455 21.83 21.83 0.00 3.21
932 933 2.093625 CGCTAATTACGTGCACATGTGT 59.906 45.455 26.01 9.67 0.00 3.72
933 934 3.670203 GCTAATTACGTGCACATGTGTC 58.330 45.455 26.01 18.27 0.00 3.67
934 935 2.873170 AATTACGTGCACATGTGTCG 57.127 45.000 29.20 29.20 36.65 4.35
935 936 0.442310 ATTACGTGCACATGTGTCGC 59.558 50.000 30.07 24.41 35.10 5.19
936 937 0.598942 TTACGTGCACATGTGTCGCT 60.599 50.000 30.07 22.83 35.10 4.93
937 938 0.598942 TACGTGCACATGTGTCGCTT 60.599 50.000 30.07 22.27 35.10 4.68
938 939 0.598942 ACGTGCACATGTGTCGCTTA 60.599 50.000 30.07 11.24 35.10 3.09
939 940 0.093535 CGTGCACATGTGTCGCTTAG 59.906 55.000 26.01 9.45 0.00 2.18
940 941 0.443869 GTGCACATGTGTCGCTTAGG 59.556 55.000 26.01 0.00 0.00 2.69
941 942 0.034756 TGCACATGTGTCGCTTAGGT 59.965 50.000 26.01 0.00 0.00 3.08
942 943 1.156736 GCACATGTGTCGCTTAGGTT 58.843 50.000 26.01 0.00 0.00 3.50
943 944 1.535462 GCACATGTGTCGCTTAGGTTT 59.465 47.619 26.01 0.00 0.00 3.27
944 945 2.739913 GCACATGTGTCGCTTAGGTTTA 59.260 45.455 26.01 0.00 0.00 2.01
945 946 3.181520 GCACATGTGTCGCTTAGGTTTAG 60.182 47.826 26.01 0.00 0.00 1.85
946 947 3.370978 CACATGTGTCGCTTAGGTTTAGG 59.629 47.826 18.03 0.00 0.00 2.69
947 948 2.754946 TGTGTCGCTTAGGTTTAGGG 57.245 50.000 0.00 0.00 0.00 3.53
948 949 2.250031 TGTGTCGCTTAGGTTTAGGGA 58.750 47.619 0.00 0.00 32.87 4.20
949 950 2.232941 TGTGTCGCTTAGGTTTAGGGAG 59.767 50.000 0.00 0.00 35.57 4.30
998 1009 0.610785 GGGCCTCCATCGAAACCAAA 60.611 55.000 0.84 0.00 0.00 3.28
1019 1030 8.499406 ACCAAAGTTATAAATAGCTATCACCCA 58.501 33.333 6.72 0.00 0.00 4.51
1020 1031 9.349713 CCAAAGTTATAAATAGCTATCACCCAA 57.650 33.333 6.72 0.00 0.00 4.12
1022 1033 9.914834 AAAGTTATAAATAGCTATCACCCAACA 57.085 29.630 6.72 0.00 0.00 3.33
1025 1042 2.240493 ATAGCTATCACCCAACACGC 57.760 50.000 0.00 0.00 0.00 5.34
1028 1045 1.602237 CTATCACCCAACACGCCCT 59.398 57.895 0.00 0.00 0.00 5.19
1203 2878 1.434622 CGCTGCGCTCTTTGATCCAT 61.435 55.000 9.88 0.00 0.00 3.41
1882 5363 2.887568 CGCGACCACATGCTCCTC 60.888 66.667 0.00 0.00 0.00 3.71
2119 5886 2.030562 CCCAAGCACGTCGAGGTT 59.969 61.111 8.27 0.00 0.00 3.50
2146 5913 1.532604 AACGTCTCGCCATCCAGACA 61.533 55.000 0.00 0.00 39.29 3.41
2398 6176 7.739995 TCTTCTACTACTACTAGGGTGTACA 57.260 40.000 0.00 0.00 0.00 2.90
2458 6237 4.724074 TTAGACGTCCCGAATACACAAT 57.276 40.909 13.01 0.00 0.00 2.71
2460 6239 3.518590 AGACGTCCCGAATACACAATTC 58.481 45.455 13.01 0.00 40.63 2.17
2530 6314 6.918022 GGCAAAGTTTATATACATTGTGGAGC 59.082 38.462 11.26 0.00 31.33 4.70
2557 6342 9.708092 TGATTTTTCATTGAAAATATCAGTGCA 57.292 25.926 25.56 13.25 43.45 4.57
2568 6353 9.617523 TGAAAATATCAGTGCAGAAATCTATCA 57.382 29.630 0.00 0.00 33.04 2.15
2571 6356 9.624373 AAATATCAGTGCAGAAATCTATCAAGT 57.376 29.630 0.00 0.00 0.00 3.16
2574 6359 8.659925 ATCAGTGCAGAAATCTATCAAGTTAG 57.340 34.615 0.00 0.00 0.00 2.34
2575 6360 7.840931 TCAGTGCAGAAATCTATCAAGTTAGA 58.159 34.615 0.00 0.00 32.94 2.10
2576 6361 7.978414 TCAGTGCAGAAATCTATCAAGTTAGAG 59.022 37.037 0.00 0.00 31.96 2.43
2577 6362 6.760770 AGTGCAGAAATCTATCAAGTTAGAGC 59.239 38.462 0.00 0.00 31.96 4.09
2578 6363 6.536582 GTGCAGAAATCTATCAAGTTAGAGCA 59.463 38.462 0.00 0.00 31.96 4.26
2579 6364 7.226325 GTGCAGAAATCTATCAAGTTAGAGCAT 59.774 37.037 0.00 0.00 31.33 3.79
2580 6365 7.440556 TGCAGAAATCTATCAAGTTAGAGCATC 59.559 37.037 0.00 0.00 31.96 3.91
2593 6378 0.678950 GAGCATCTCTAGCAGACCCC 59.321 60.000 0.00 0.00 32.26 4.95
2594 6379 0.264359 AGCATCTCTAGCAGACCCCT 59.736 55.000 0.00 0.00 32.26 4.79
2595 6380 1.127343 GCATCTCTAGCAGACCCCTT 58.873 55.000 0.00 0.00 32.26 3.95
2596 6381 2.091055 AGCATCTCTAGCAGACCCCTTA 60.091 50.000 0.00 0.00 32.26 2.69
2597 6382 2.700897 GCATCTCTAGCAGACCCCTTAA 59.299 50.000 0.00 0.00 32.26 1.85
2598 6383 3.134804 GCATCTCTAGCAGACCCCTTAAA 59.865 47.826 0.00 0.00 32.26 1.52
2599 6384 4.698575 CATCTCTAGCAGACCCCTTAAAC 58.301 47.826 0.00 0.00 32.26 2.01
2600 6385 4.062490 TCTCTAGCAGACCCCTTAAACT 57.938 45.455 0.00 0.00 0.00 2.66
2601 6386 3.769844 TCTCTAGCAGACCCCTTAAACTG 59.230 47.826 0.00 0.00 0.00 3.16
2603 6388 2.171635 GCAGACCCCTTAAACTGCG 58.828 57.895 0.00 0.00 44.27 5.18
2604 6389 0.321298 GCAGACCCCTTAAACTGCGA 60.321 55.000 0.00 0.00 44.27 5.10
2605 6390 1.880646 GCAGACCCCTTAAACTGCGAA 60.881 52.381 0.00 0.00 44.27 4.70
2606 6391 2.500229 CAGACCCCTTAAACTGCGAAA 58.500 47.619 0.00 0.00 0.00 3.46
2607 6392 2.225727 CAGACCCCTTAAACTGCGAAAC 59.774 50.000 0.00 0.00 0.00 2.78
2608 6393 2.158726 AGACCCCTTAAACTGCGAAACA 60.159 45.455 0.00 0.00 0.00 2.83
2609 6394 1.951602 ACCCCTTAAACTGCGAAACAC 59.048 47.619 0.00 0.00 0.00 3.32
2610 6395 1.069500 CCCCTTAAACTGCGAAACACG 60.069 52.381 0.00 0.00 45.66 4.49
2611 6396 1.868498 CCCTTAAACTGCGAAACACGA 59.132 47.619 0.00 0.00 45.77 4.35
2612 6397 2.288458 CCCTTAAACTGCGAAACACGAA 59.712 45.455 0.00 0.00 45.77 3.85
2613 6398 3.242804 CCCTTAAACTGCGAAACACGAAA 60.243 43.478 0.00 0.00 45.77 3.46
2614 6399 4.344448 CCTTAAACTGCGAAACACGAAAA 58.656 39.130 0.00 0.00 45.77 2.29
2615 6400 4.203563 CCTTAAACTGCGAAACACGAAAAC 59.796 41.667 0.00 0.00 45.77 2.43
2628 6413 5.838531 ACACGAAAACCACATTTTAAGGA 57.161 34.783 0.00 0.00 40.73 3.36
2641 6426 6.930722 CACATTTTAAGGATTGGTTTGAGCTT 59.069 34.615 0.00 0.00 0.00 3.74
2642 6427 8.087750 CACATTTTAAGGATTGGTTTGAGCTTA 58.912 33.333 0.00 0.00 0.00 3.09
2643 6428 8.815912 ACATTTTAAGGATTGGTTTGAGCTTAT 58.184 29.630 0.00 0.00 0.00 1.73
2646 6431 4.322057 AGGATTGGTTTGAGCTTATGGT 57.678 40.909 0.00 0.00 0.00 3.55
2688 6473 6.987992 ACTTAGACTGTAAAACCGAATGTTCA 59.012 34.615 0.00 0.00 35.67 3.18
2704 6489 6.129431 CGAATGTTCACGTATATTCTTCCTCG 60.129 42.308 6.33 0.00 0.00 4.63
2717 6502 2.296471 TCTTCCTCGCGTCTTCTTCTTT 59.704 45.455 5.77 0.00 0.00 2.52
2735 6520 2.961526 TTCTCTCGCCTATGTTCACC 57.038 50.000 0.00 0.00 0.00 4.02
2749 6534 0.958876 TTCACCGTCAGCTAGCTCGA 60.959 55.000 23.21 17.20 0.00 4.04
2751 6536 0.101399 CACCGTCAGCTAGCTCGATT 59.899 55.000 23.21 9.87 0.00 3.34
2752 6537 0.101399 ACCGTCAGCTAGCTCGATTG 59.899 55.000 23.21 16.12 0.00 2.67
2759 6544 3.315470 TCAGCTAGCTCGATTGTACGAAT 59.685 43.478 16.15 0.00 41.67 3.34
2764 6549 1.535437 GCTCGATTGTACGAATCCGGT 60.535 52.381 0.00 0.00 41.67 5.28
2770 6555 0.967662 TGTACGAATCCGGTGGACAA 59.032 50.000 0.00 0.00 40.78 3.18
2795 6591 1.320555 CGAAGTGACCAAATAGCGTCG 59.679 52.381 0.00 0.00 0.00 5.12
2801 6597 0.892755 ACCAAATAGCGTCGAGGACA 59.107 50.000 9.75 0.00 32.09 4.02
2825 6628 4.778143 ACGAAGCGCCCCCACATC 62.778 66.667 2.29 0.00 0.00 3.06
2856 6659 2.152016 TCGCTACTCGAATCGATCCAT 58.848 47.619 5.59 0.00 45.36 3.41
2887 6690 3.417601 TCGGCGTCGAATCGATCT 58.582 55.556 10.97 0.00 43.03 2.75
2888 6691 1.278937 TCGGCGTCGAATCGATCTC 59.721 57.895 10.97 0.94 43.03 2.75
2891 6694 0.661780 GGCGTCGAATCGATCTCAGG 60.662 60.000 9.10 0.00 38.42 3.86
2945 6791 2.640421 GCTAGCTAGCTCCCGTCG 59.360 66.667 33.71 5.19 45.62 5.12
2946 6792 2.640421 CTAGCTAGCTCCCGTCGC 59.360 66.667 23.26 0.00 0.00 5.19
2948 6794 3.417167 TAGCTAGCTCCCGTCGCCT 62.417 63.158 23.26 0.00 0.00 5.52
2949 6795 4.577246 GCTAGCTCCCGTCGCCTG 62.577 72.222 7.70 0.00 0.00 4.85
2972 6839 2.822255 GCCAAATACGGAGCCGCA 60.822 61.111 9.14 0.00 44.19 5.69
3012 6880 0.608308 TCTCGTTCCTCTTCCTCGCA 60.608 55.000 0.00 0.00 0.00 5.10
3015 6883 0.457851 CGTTCCTCTTCCTCGCATCT 59.542 55.000 0.00 0.00 0.00 2.90
3070 6938 1.267806 CGCTCAATCCTTTTGCAGTGT 59.732 47.619 0.00 0.00 0.00 3.55
3090 6958 4.518970 GTGTAGAATTTTGTTGGAGCAGGA 59.481 41.667 0.00 0.00 0.00 3.86
3098 6966 3.507162 TGTTGGAGCAGGAAGAAATCA 57.493 42.857 0.00 0.00 0.00 2.57
3120 6989 1.681327 GCTGGAGAGGGTGGTACGA 60.681 63.158 0.00 0.00 0.00 3.43
3234 7105 4.499037 GTTTTCGATGGCCTGTAAAACT 57.501 40.909 19.83 0.00 37.18 2.66
3239 7110 6.827586 TTCGATGGCCTGTAAAACTTTTAT 57.172 33.333 3.32 0.00 0.00 1.40
3248 7119 5.278561 CCTGTAAAACTTTTATGGTTCCGCA 60.279 40.000 0.00 0.00 0.00 5.69
3259 7130 2.015587 TGGTTCCGCAAACTTTTACGT 58.984 42.857 0.00 0.00 38.02 3.57
3264 7135 1.334329 CCGCAAACTTTTACGTGGTCC 60.334 52.381 0.00 0.00 0.00 4.46
3290 7161 5.413309 TTGGACACAAAATTGGTTCAAGT 57.587 34.783 0.00 0.00 32.66 3.16
3291 7162 5.413309 TGGACACAAAATTGGTTCAAGTT 57.587 34.783 0.00 0.00 33.01 2.66
3346 7219 6.442564 TGTTTTTAAGGGGTCTGCTAGAGATA 59.557 38.462 0.00 0.00 31.63 1.98
3350 7223 2.109304 AGGGGTCTGCTAGAGATACTCC 59.891 54.545 0.00 0.00 31.63 3.85
3353 7226 4.202588 GGGGTCTGCTAGAGATACTCCTAA 60.203 50.000 0.00 0.00 31.63 2.69
3354 7227 5.517655 GGGGTCTGCTAGAGATACTCCTAAT 60.518 48.000 0.00 0.00 31.63 1.73
3355 7228 6.297126 GGGGTCTGCTAGAGATACTCCTAATA 60.297 46.154 0.00 0.00 31.63 0.98
3356 7229 7.176490 GGGTCTGCTAGAGATACTCCTAATAA 58.824 42.308 0.00 0.00 31.63 1.40
3357 7230 7.670559 GGGTCTGCTAGAGATACTCCTAATAAA 59.329 40.741 0.00 0.00 31.63 1.40
3358 7231 8.517056 GGTCTGCTAGAGATACTCCTAATAAAC 58.483 40.741 0.00 0.00 31.63 2.01
3359 7232 9.292195 GTCTGCTAGAGATACTCCTAATAAACT 57.708 37.037 0.00 0.00 31.63 2.66
3360 7233 9.509956 TCTGCTAGAGATACTCCTAATAAACTC 57.490 37.037 0.00 0.00 0.00 3.01
3361 7234 8.638629 TGCTAGAGATACTCCTAATAAACTCC 57.361 38.462 0.00 0.00 0.00 3.85
3362 7235 7.670559 TGCTAGAGATACTCCTAATAAACTCCC 59.329 40.741 0.00 0.00 0.00 4.30
3363 7236 7.891712 GCTAGAGATACTCCTAATAAACTCCCT 59.108 40.741 0.00 0.00 0.00 4.20
3366 7239 9.185007 AGAGATACTCCTAATAAACTCCCTAGA 57.815 37.037 0.00 0.00 0.00 2.43
3367 7240 9.810870 GAGATACTCCTAATAAACTCCCTAGAA 57.189 37.037 0.00 0.00 0.00 2.10
3370 7243 7.527568 ACTCCTAATAAACTCCCTAGAATCG 57.472 40.000 0.00 0.00 0.00 3.34
3371 7244 6.015265 ACTCCTAATAAACTCCCTAGAATCGC 60.015 42.308 0.00 0.00 0.00 4.58
3372 7245 6.075984 TCCTAATAAACTCCCTAGAATCGCT 58.924 40.000 0.00 0.00 0.00 4.93
3373 7246 6.015350 TCCTAATAAACTCCCTAGAATCGCTG 60.015 42.308 0.00 0.00 0.00 5.18
3374 7247 5.871396 AATAAACTCCCTAGAATCGCTGA 57.129 39.130 0.00 0.00 0.00 4.26
3375 7248 3.528597 AAACTCCCTAGAATCGCTGAC 57.471 47.619 0.00 0.00 0.00 3.51
3376 7249 2.445682 ACTCCCTAGAATCGCTGACT 57.554 50.000 0.00 0.00 0.00 3.41
3377 7250 2.303175 ACTCCCTAGAATCGCTGACTC 58.697 52.381 0.00 0.00 0.00 3.36
3378 7251 1.265635 CTCCCTAGAATCGCTGACTCG 59.734 57.143 0.00 0.00 0.00 4.18
3379 7252 1.025812 CCCTAGAATCGCTGACTCGT 58.974 55.000 0.00 0.00 0.00 4.18
3380 7253 1.268794 CCCTAGAATCGCTGACTCGTG 60.269 57.143 0.00 0.00 0.00 4.35
3381 7254 1.268794 CCTAGAATCGCTGACTCGTGG 60.269 57.143 0.00 0.00 0.00 4.94
3382 7255 0.100682 TAGAATCGCTGACTCGTGGC 59.899 55.000 0.00 0.00 0.00 5.01
3383 7256 1.153745 GAATCGCTGACTCGTGGCT 60.154 57.895 0.00 0.00 0.00 4.75
3384 7257 0.737715 GAATCGCTGACTCGTGGCTT 60.738 55.000 0.00 0.00 0.00 4.35
3385 7258 1.016130 AATCGCTGACTCGTGGCTTG 61.016 55.000 0.00 0.00 0.00 4.01
3386 7259 2.842394 ATCGCTGACTCGTGGCTTGG 62.842 60.000 0.00 0.00 0.00 3.61
3387 7260 2.031163 GCTGACTCGTGGCTTGGT 59.969 61.111 0.00 0.00 0.00 3.67
3388 7261 1.292223 GCTGACTCGTGGCTTGGTA 59.708 57.895 0.00 0.00 0.00 3.25
3389 7262 0.320421 GCTGACTCGTGGCTTGGTAA 60.320 55.000 0.00 0.00 0.00 2.85
3390 7263 1.676014 GCTGACTCGTGGCTTGGTAAT 60.676 52.381 0.00 0.00 0.00 1.89
3391 7264 2.271800 CTGACTCGTGGCTTGGTAATC 58.728 52.381 0.00 0.00 0.00 1.75
3392 7265 1.278238 GACTCGTGGCTTGGTAATCG 58.722 55.000 0.00 0.00 0.00 3.34
3393 7266 0.739813 ACTCGTGGCTTGGTAATCGC 60.740 55.000 0.00 0.00 0.00 4.58
3394 7267 0.460284 CTCGTGGCTTGGTAATCGCT 60.460 55.000 0.00 0.00 0.00 4.93
3395 7268 0.739462 TCGTGGCTTGGTAATCGCTG 60.739 55.000 0.00 0.00 0.00 5.18
3396 7269 1.429423 GTGGCTTGGTAATCGCTGC 59.571 57.895 0.00 0.00 0.00 5.25
3397 7270 1.748879 TGGCTTGGTAATCGCTGCC 60.749 57.895 0.00 0.00 40.62 4.85
3398 7271 2.481471 GGCTTGGTAATCGCTGCCC 61.481 63.158 0.00 0.00 34.81 5.36
3399 7272 2.823829 GCTTGGTAATCGCTGCCCG 61.824 63.158 0.00 0.00 38.61 6.13
3407 7280 4.841617 TCGCTGCCCGAGGAGGAT 62.842 66.667 0.00 0.00 45.00 3.24
3408 7281 2.912542 CGCTGCCCGAGGAGGATA 60.913 66.667 0.00 0.00 45.00 2.59
3409 7282 2.279069 CGCTGCCCGAGGAGGATAT 61.279 63.158 0.00 0.00 45.00 1.63
3410 7283 0.965866 CGCTGCCCGAGGAGGATATA 60.966 60.000 0.00 0.00 45.00 0.86
3411 7284 1.490574 GCTGCCCGAGGAGGATATAT 58.509 55.000 0.00 0.00 45.00 0.86
3412 7285 1.137872 GCTGCCCGAGGAGGATATATG 59.862 57.143 0.00 0.00 45.00 1.78
3413 7286 1.137872 CTGCCCGAGGAGGATATATGC 59.862 57.143 0.00 0.00 45.00 3.14
3414 7287 1.195115 GCCCGAGGAGGATATATGCA 58.805 55.000 7.02 0.00 45.00 3.96
3415 7288 1.765314 GCCCGAGGAGGATATATGCAT 59.235 52.381 3.79 3.79 45.00 3.96
3416 7289 2.484417 GCCCGAGGAGGATATATGCATG 60.484 54.545 10.16 0.00 45.00 4.06
3417 7290 2.103771 CCCGAGGAGGATATATGCATGG 59.896 54.545 10.16 0.00 45.00 3.66
3418 7291 2.103771 CCGAGGAGGATATATGCATGGG 59.896 54.545 10.16 0.00 45.00 4.00
3419 7292 3.033909 CGAGGAGGATATATGCATGGGA 58.966 50.000 10.16 0.00 0.00 4.37
3420 7293 3.452264 CGAGGAGGATATATGCATGGGAA 59.548 47.826 10.16 0.00 0.00 3.97
3421 7294 4.080919 CGAGGAGGATATATGCATGGGAAA 60.081 45.833 10.16 0.00 0.00 3.13
3422 7295 5.184892 AGGAGGATATATGCATGGGAAAC 57.815 43.478 10.16 0.00 0.00 2.78
3423 7296 3.941483 GGAGGATATATGCATGGGAAACG 59.059 47.826 10.16 0.00 0.00 3.60
3424 7297 4.565652 GGAGGATATATGCATGGGAAACGT 60.566 45.833 10.16 0.00 0.00 3.99
3425 7298 4.985538 AGGATATATGCATGGGAAACGTT 58.014 39.130 10.16 0.00 0.00 3.99
3426 7299 5.385198 AGGATATATGCATGGGAAACGTTT 58.615 37.500 14.57 14.57 0.00 3.60
3427 7300 6.539173 AGGATATATGCATGGGAAACGTTTA 58.461 36.000 14.65 0.00 0.00 2.01
3428 7301 6.655003 AGGATATATGCATGGGAAACGTTTAG 59.345 38.462 14.65 3.27 0.00 1.85
3429 7302 6.128007 GGATATATGCATGGGAAACGTTTAGG 60.128 42.308 14.65 1.21 0.00 2.69
3430 7303 2.279935 TGCATGGGAAACGTTTAGGT 57.720 45.000 14.65 0.00 0.00 3.08
3431 7304 3.420300 TGCATGGGAAACGTTTAGGTA 57.580 42.857 14.65 0.00 0.00 3.08
3432 7305 3.075884 TGCATGGGAAACGTTTAGGTAC 58.924 45.455 14.65 0.41 0.00 3.34
3433 7306 2.094734 GCATGGGAAACGTTTAGGTACG 59.905 50.000 14.65 2.68 46.52 3.67
3434 7307 1.794512 TGGGAAACGTTTAGGTACGC 58.205 50.000 14.65 9.88 45.06 4.42
3435 7308 1.078709 GGGAAACGTTTAGGTACGCC 58.921 55.000 14.65 8.76 45.06 5.68
3436 7309 0.715551 GGAAACGTTTAGGTACGCCG 59.284 55.000 14.65 0.00 45.06 6.46
3437 7310 0.093535 GAAACGTTTAGGTACGCCGC 59.906 55.000 14.65 0.00 45.06 6.53
3438 7311 0.599728 AAACGTTTAGGTACGCCGCA 60.600 50.000 12.83 0.00 45.06 5.69
3439 7312 1.284297 AACGTTTAGGTACGCCGCAC 61.284 55.000 0.00 0.00 45.06 5.34
3440 7313 2.447070 CGTTTAGGTACGCCGCACC 61.447 63.158 0.00 0.00 40.50 5.01
3441 7314 2.125991 TTTAGGTACGCCGCACCG 60.126 61.111 0.00 0.00 41.21 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.608717 GGAGTGACGCCATGAGTCCT 61.609 60.000 15.45 12.46 37.80 3.85
177 178 2.110213 GTCACGGCCACAAGGACA 59.890 61.111 2.24 0.00 46.60 4.02
195 196 1.403780 GCGTACCAAATCGACCAGAGT 60.404 52.381 0.00 0.00 0.00 3.24
196 197 1.135083 AGCGTACCAAATCGACCAGAG 60.135 52.381 0.00 0.00 0.00 3.35
198 199 2.460918 CTAGCGTACCAAATCGACCAG 58.539 52.381 0.00 0.00 0.00 4.00
207 208 1.206371 GCTTTCCTCCTAGCGTACCAA 59.794 52.381 0.00 0.00 0.00 3.67
220 221 0.106318 GCCTCATGGATGGCTTTCCT 60.106 55.000 14.92 0.00 45.26 3.36
243 244 0.251742 TGGCATGGGGACTTTGGAAG 60.252 55.000 0.00 0.00 0.00 3.46
278 279 3.168292 TCCAGTTCAGAGATGAAGCTCA 58.832 45.455 0.00 0.00 37.37 4.26
288 289 4.384647 CCCTTTATCCCTTCCAGTTCAGAG 60.385 50.000 0.00 0.00 0.00 3.35
297 298 0.468214 GGCTGCCCTTTATCCCTTCC 60.468 60.000 7.66 0.00 0.00 3.46
302 303 1.685148 CTCTTGGCTGCCCTTTATCC 58.315 55.000 17.53 0.00 0.00 2.59
304 305 0.332632 TGCTCTTGGCTGCCCTTTAT 59.667 50.000 17.53 0.00 42.39 1.40
308 309 1.605738 CTTTGCTCTTGGCTGCCCT 60.606 57.895 17.53 0.00 42.39 5.19
312 313 0.892358 TGCCTCTTTGCTCTTGGCTG 60.892 55.000 0.00 0.00 43.57 4.85
313 314 0.608582 CTGCCTCTTTGCTCTTGGCT 60.609 55.000 0.00 0.00 43.57 4.75
315 316 0.964358 CCCTGCCTCTTTGCTCTTGG 60.964 60.000 0.00 0.00 0.00 3.61
347 348 6.618287 TCGGCTTCAAATTTCTATGTATGG 57.382 37.500 0.00 0.00 0.00 2.74
348 349 8.909708 TTTTCGGCTTCAAATTTCTATGTATG 57.090 30.769 0.00 0.00 0.00 2.39
375 376 1.064003 TGCAGTATCCTGTTGGTGGT 58.936 50.000 0.00 0.00 41.02 4.16
405 406 1.274703 TTCCCTGGACTCCTGCATCC 61.275 60.000 0.00 0.00 35.37 3.51
410 411 4.896979 TCCTTCCCTGGACTCCTG 57.103 61.111 0.00 0.00 0.00 3.86
419 420 2.204151 CACCCCCTGTCCTTCCCT 60.204 66.667 0.00 0.00 0.00 4.20
447 448 0.325933 CACCTTCATCCCTGCAGACA 59.674 55.000 17.39 0.22 0.00 3.41
453 454 6.192970 AGATAATTACCACCTTCATCCCTG 57.807 41.667 0.00 0.00 0.00 4.45
483 484 3.436015 CACCTTCAATCACAAGAGCAGAG 59.564 47.826 0.00 0.00 0.00 3.35
492 493 3.755112 TCGGTAACACCTTCAATCACA 57.245 42.857 0.00 0.00 35.66 3.58
498 499 1.066430 GCTGGATCGGTAACACCTTCA 60.066 52.381 0.00 0.00 35.66 3.02
504 505 1.899814 AGACTTGCTGGATCGGTAACA 59.100 47.619 0.00 0.00 0.00 2.41
507 508 3.292492 TCTAGACTTGCTGGATCGGTA 57.708 47.619 0.00 0.00 0.00 4.02
514 515 3.559242 GCTATTGCTTCTAGACTTGCTGG 59.441 47.826 11.32 0.00 36.03 4.85
530 531 4.069869 CCTCCCGGCATGCTATTG 57.930 61.111 18.92 5.26 0.00 1.90
564 565 5.865552 CACAAAATGATGAATGTCCAAGTCC 59.134 40.000 0.00 0.00 0.00 3.85
567 568 5.786311 ACCACAAAATGATGAATGTCCAAG 58.214 37.500 0.00 0.00 0.00 3.61
572 573 5.217978 AGCAACCACAAAATGATGAATGT 57.782 34.783 0.00 0.00 0.00 2.71
573 574 5.164031 CGAAGCAACCACAAAATGATGAATG 60.164 40.000 0.00 0.00 0.00 2.67
590 591 2.669569 GCTGGCAGTCCGAAGCAA 60.670 61.111 17.16 0.00 33.05 3.91
594 595 3.241530 ACCTGCTGGCAGTCCGAA 61.242 61.111 17.16 0.00 42.15 4.30
600 601 2.670934 GACACCACCTGCTGGCAG 60.671 66.667 10.94 10.94 45.32 4.85
617 618 2.416566 CGGCCTTCTCTCATGATATCCG 60.417 54.545 0.00 0.00 0.00 4.18
621 622 2.242926 CCTCGGCCTTCTCTCATGATA 58.757 52.381 0.00 0.00 0.00 2.15
626 627 1.682684 GGACCTCGGCCTTCTCTCA 60.683 63.158 0.00 0.00 0.00 3.27
627 628 1.045911 ATGGACCTCGGCCTTCTCTC 61.046 60.000 0.00 0.00 0.00 3.20
630 631 1.051812 CATATGGACCTCGGCCTTCT 58.948 55.000 0.00 0.00 0.00 2.85
633 634 0.833834 CTCCATATGGACCTCGGCCT 60.834 60.000 20.98 0.00 39.78 5.19
635 636 1.004440 GCTCCATATGGACCTCGGC 60.004 63.158 20.98 17.55 39.78 5.54
639 640 3.654321 TGATGATTGCTCCATATGGACCT 59.346 43.478 20.98 3.66 39.78 3.85
660 661 8.945481 ATGAAACTCTCAGATTTATCTCACTG 57.055 34.615 0.00 0.00 37.52 3.66
675 676 7.913674 AGTACAATGGAAAGATGAAACTCTC 57.086 36.000 0.00 0.00 0.00 3.20
711 712 6.801862 GCTTCATAATTAACAGCACGACTTTT 59.198 34.615 8.36 0.00 0.00 2.27
714 715 4.935205 TGCTTCATAATTAACAGCACGACT 59.065 37.500 10.87 0.00 35.56 4.18
715 716 5.216566 TGCTTCATAATTAACAGCACGAC 57.783 39.130 10.87 0.00 35.56 4.34
758 759 2.372172 CCTGCCCGGACCTCTATTTAAT 59.628 50.000 0.73 0.00 33.16 1.40
762 763 2.444256 GCCTGCCCGGACCTCTATT 61.444 63.158 0.73 0.00 33.16 1.73
763 764 2.844839 GCCTGCCCGGACCTCTAT 60.845 66.667 0.73 0.00 33.16 1.98
768 769 4.740822 AACATGCCTGCCCGGACC 62.741 66.667 0.73 0.00 33.16 4.46
770 771 2.676121 CAAACATGCCTGCCCGGA 60.676 61.111 0.73 0.00 33.16 5.14
776 777 0.320073 CACCAAGCCAAACATGCCTG 60.320 55.000 0.00 0.00 0.00 4.85
800 801 3.136443 GTGGGATACATCTTGGGTCATGA 59.864 47.826 0.00 0.00 39.74 3.07
870 871 0.541998 GGCTGGCAAGGGGTAGTTTT 60.542 55.000 0.00 0.00 0.00 2.43
871 872 1.076727 GGCTGGCAAGGGGTAGTTT 59.923 57.895 0.00 0.00 0.00 2.66
872 873 1.509548 ATGGCTGGCAAGGGGTAGTT 61.510 55.000 8.35 0.00 0.00 2.24
874 875 1.152881 GATGGCTGGCAAGGGGTAG 60.153 63.158 8.35 0.00 0.00 3.18
876 877 4.066139 GGATGGCTGGCAAGGGGT 62.066 66.667 8.35 0.00 0.00 4.95
878 879 4.431131 ACGGATGGCTGGCAAGGG 62.431 66.667 8.35 2.61 0.00 3.95
879 880 3.136123 CACGGATGGCTGGCAAGG 61.136 66.667 8.35 2.99 0.00 3.61
884 885 2.124983 CTGGACACGGATGGCTGG 60.125 66.667 0.00 0.00 32.54 4.85
885 886 2.809861 AAGCTGGACACGGATGGCTG 62.810 60.000 0.00 0.00 32.54 4.85
886 887 2.596851 AAGCTGGACACGGATGGCT 61.597 57.895 0.00 0.00 32.54 4.75
887 888 2.045926 AAGCTGGACACGGATGGC 60.046 61.111 0.00 0.00 0.00 4.40
888 889 1.746615 CCAAGCTGGACACGGATGG 60.747 63.158 0.00 0.00 40.96 3.51
889 890 0.606401 AACCAAGCTGGACACGGATG 60.606 55.000 8.91 0.00 40.96 3.51
890 891 0.606401 CAACCAAGCTGGACACGGAT 60.606 55.000 8.91 0.00 40.96 4.18
891 892 1.227823 CAACCAAGCTGGACACGGA 60.228 57.895 8.91 0.00 40.96 4.69
892 893 1.507141 GACAACCAAGCTGGACACGG 61.507 60.000 8.91 0.00 40.96 4.94
893 894 1.831389 CGACAACCAAGCTGGACACG 61.831 60.000 8.91 5.70 40.96 4.49
894 895 1.941812 CGACAACCAAGCTGGACAC 59.058 57.895 8.91 0.00 40.96 3.67
895 896 1.891919 GCGACAACCAAGCTGGACA 60.892 57.895 8.91 0.00 40.96 4.02
897 898 0.394938 TTAGCGACAACCAAGCTGGA 59.605 50.000 8.91 0.00 40.96 3.86
898 899 1.453155 ATTAGCGACAACCAAGCTGG 58.547 50.000 0.00 0.00 45.02 4.85
899 900 3.483574 CGTAATTAGCGACAACCAAGCTG 60.484 47.826 0.00 0.00 41.80 4.24
901 902 2.414138 ACGTAATTAGCGACAACCAAGC 59.586 45.455 12.36 0.00 0.00 4.01
904 905 1.727880 GCACGTAATTAGCGACAACCA 59.272 47.619 12.36 0.00 0.00 3.67
905 906 1.727880 TGCACGTAATTAGCGACAACC 59.272 47.619 12.36 0.77 0.00 3.77
906 907 2.156117 TGTGCACGTAATTAGCGACAAC 59.844 45.455 13.13 8.30 0.00 3.32
908 909 2.067414 TGTGCACGTAATTAGCGACA 57.933 45.000 13.13 8.28 0.00 4.35
909 910 2.347452 ACATGTGCACGTAATTAGCGAC 59.653 45.455 12.10 6.45 0.00 5.19
910 911 2.347150 CACATGTGCACGTAATTAGCGA 59.653 45.455 13.94 0.00 0.00 4.93
911 912 2.093625 ACACATGTGCACGTAATTAGCG 59.906 45.455 25.68 0.00 0.00 4.26
912 913 3.670203 GACACATGTGCACGTAATTAGC 58.330 45.455 25.68 0.00 0.00 3.09
913 914 3.780957 GCGACACATGTGCACGTAATTAG 60.781 47.826 31.24 13.44 36.57 1.73
914 915 2.092995 GCGACACATGTGCACGTAATTA 59.907 45.455 31.24 0.00 36.57 1.40
915 916 1.136085 GCGACACATGTGCACGTAATT 60.136 47.619 31.24 12.79 36.57 1.40
916 917 0.442310 GCGACACATGTGCACGTAAT 59.558 50.000 31.24 13.41 36.57 1.89
917 918 0.598942 AGCGACACATGTGCACGTAA 60.599 50.000 31.24 0.00 36.57 3.18
918 919 0.598942 AAGCGACACATGTGCACGTA 60.599 50.000 31.24 0.00 36.57 3.57
919 920 0.598942 TAAGCGACACATGTGCACGT 60.599 50.000 31.24 21.66 36.57 4.49
920 921 0.093535 CTAAGCGACACATGTGCACG 59.906 55.000 29.01 29.01 36.99 5.34
921 922 0.443869 CCTAAGCGACACATGTGCAC 59.556 55.000 25.68 17.88 0.00 4.57
922 923 0.034756 ACCTAAGCGACACATGTGCA 59.965 50.000 25.68 3.52 0.00 4.57
923 924 1.156736 AACCTAAGCGACACATGTGC 58.843 50.000 25.68 16.56 0.00 4.57
924 925 3.370978 CCTAAACCTAAGCGACACATGTG 59.629 47.826 24.25 24.25 0.00 3.21
925 926 3.596214 CCTAAACCTAAGCGACACATGT 58.404 45.455 0.00 0.00 0.00 3.21
926 927 2.936498 CCCTAAACCTAAGCGACACATG 59.064 50.000 0.00 0.00 0.00 3.21
927 928 2.835764 TCCCTAAACCTAAGCGACACAT 59.164 45.455 0.00 0.00 0.00 3.21
928 929 2.232941 CTCCCTAAACCTAAGCGACACA 59.767 50.000 0.00 0.00 0.00 3.72
929 930 2.889852 CTCCCTAAACCTAAGCGACAC 58.110 52.381 0.00 0.00 0.00 3.67
930 931 1.206371 GCTCCCTAAACCTAAGCGACA 59.794 52.381 0.00 0.00 0.00 4.35
931 932 1.472904 GGCTCCCTAAACCTAAGCGAC 60.473 57.143 0.00 0.00 33.77 5.19
932 933 0.828677 GGCTCCCTAAACCTAAGCGA 59.171 55.000 0.00 0.00 33.77 4.93
933 934 0.179054 GGGCTCCCTAAACCTAAGCG 60.179 60.000 0.00 0.00 33.77 4.68
934 935 1.134068 CAGGGCTCCCTAAACCTAAGC 60.134 57.143 7.23 0.00 46.28 3.09
935 936 1.134068 GCAGGGCTCCCTAAACCTAAG 60.134 57.143 7.23 0.00 46.28 2.18
936 937 0.916809 GCAGGGCTCCCTAAACCTAA 59.083 55.000 7.23 0.00 46.28 2.69
937 938 0.044244 AGCAGGGCTCCCTAAACCTA 59.956 55.000 7.23 0.00 46.28 3.08
938 939 1.229984 AGCAGGGCTCCCTAAACCT 60.230 57.895 7.23 0.00 46.28 3.50
939 940 3.416351 AGCAGGGCTCCCTAAACC 58.584 61.111 7.23 0.00 46.28 3.27
948 949 0.975040 AGTTCAGATCGAGCAGGGCT 60.975 55.000 2.38 0.00 43.88 5.19
949 950 0.529555 GAGTTCAGATCGAGCAGGGC 60.530 60.000 2.38 0.00 0.00 5.19
998 1009 7.656137 CGTGTTGGGTGATAGCTATTTATAACT 59.344 37.037 7.87 0.00 0.00 2.24
1019 1030 1.463674 GATCAATGGAAGGGCGTGTT 58.536 50.000 0.00 0.00 0.00 3.32
1020 1031 0.394352 GGATCAATGGAAGGGCGTGT 60.394 55.000 0.00 0.00 0.00 4.49
1022 1033 0.552848 ATGGATCAATGGAAGGGCGT 59.447 50.000 0.00 0.00 0.00 5.68
1025 1042 2.961062 GTTGGATGGATCAATGGAAGGG 59.039 50.000 0.00 0.00 0.00 3.95
1028 1045 3.016031 CGTGTTGGATGGATCAATGGAA 58.984 45.455 0.00 0.00 0.00 3.53
1258 4513 0.815615 CCACCTCCGGCAATAGCTTC 60.816 60.000 0.00 0.00 41.70 3.86
2005 5632 0.817654 TCGTGTCCTTGATCAGCGAT 59.182 50.000 0.00 0.00 0.00 4.58
2119 5886 3.478394 GCGAGACGTTCATGCGCA 61.478 61.111 14.96 14.96 46.19 6.09
2146 5913 1.115930 AAGTGTCCGTGAGCAGGAGT 61.116 55.000 0.00 0.00 38.65 3.85
2398 6176 8.890718 GTTCCAAGTAAAAGTAAAACAGAGAGT 58.109 33.333 0.00 0.00 0.00 3.24
2446 6225 6.668541 AAGTGATCAGAATTGTGTATTCGG 57.331 37.500 0.00 0.00 45.99 4.30
2482 6261 6.682611 GCCTGCTTACATAAATAAATGTGGCA 60.683 38.462 14.12 14.12 40.77 4.92
2484 6263 6.804677 TGCCTGCTTACATAAATAAATGTGG 58.195 36.000 0.00 0.00 40.29 4.17
2486 6265 8.531146 ACTTTGCCTGCTTACATAAATAAATGT 58.469 29.630 0.00 0.00 42.62 2.71
2487 6266 8.931385 ACTTTGCCTGCTTACATAAATAAATG 57.069 30.769 0.00 0.00 0.00 2.32
2502 6286 6.697019 CCACAATGTATATAAACTTTGCCTGC 59.303 38.462 4.84 0.00 37.79 4.85
2518 6302 6.839124 ATGAAAAATCAGCTCCACAATGTA 57.161 33.333 0.00 0.00 0.00 2.29
2519 6303 5.733620 ATGAAAAATCAGCTCCACAATGT 57.266 34.783 0.00 0.00 0.00 2.71
2553 6338 6.536582 TGCTCTAACTTGATAGATTTCTGCAC 59.463 38.462 0.00 0.00 31.75 4.57
2557 6342 9.146586 AGAGATGCTCTAACTTGATAGATTTCT 57.853 33.333 0.00 0.00 39.28 2.52
2566 6351 5.067153 GTCTGCTAGAGATGCTCTAACTTGA 59.933 44.000 5.75 2.77 41.74 3.02
2568 6353 4.340950 GGTCTGCTAGAGATGCTCTAACTT 59.659 45.833 5.75 0.00 41.74 2.66
2570 6355 3.005367 GGGTCTGCTAGAGATGCTCTAAC 59.995 52.174 5.75 2.48 41.74 2.34
2571 6356 3.226777 GGGTCTGCTAGAGATGCTCTAA 58.773 50.000 5.75 0.00 41.74 2.10
2573 6358 1.703411 GGGTCTGCTAGAGATGCTCT 58.297 55.000 0.00 2.22 43.83 4.09
2574 6359 0.678950 GGGGTCTGCTAGAGATGCTC 59.321 60.000 0.00 0.00 31.63 4.26
2575 6360 0.264359 AGGGGTCTGCTAGAGATGCT 59.736 55.000 0.00 0.00 31.63 3.79
2576 6361 1.127343 AAGGGGTCTGCTAGAGATGC 58.873 55.000 0.00 0.00 31.63 3.91
2577 6362 4.407296 AGTTTAAGGGGTCTGCTAGAGATG 59.593 45.833 0.00 0.00 31.63 2.90
2578 6363 4.407296 CAGTTTAAGGGGTCTGCTAGAGAT 59.593 45.833 0.00 0.00 31.63 2.75
2579 6364 3.769844 CAGTTTAAGGGGTCTGCTAGAGA 59.230 47.826 0.00 0.00 0.00 3.10
2580 6365 3.680196 GCAGTTTAAGGGGTCTGCTAGAG 60.680 52.174 8.46 0.00 35.26 2.43
2581 6366 2.236395 GCAGTTTAAGGGGTCTGCTAGA 59.764 50.000 8.46 0.00 35.26 2.43
2582 6367 2.633488 GCAGTTTAAGGGGTCTGCTAG 58.367 52.381 8.46 0.00 35.26 3.42
2583 6368 1.066430 CGCAGTTTAAGGGGTCTGCTA 60.066 52.381 12.81 0.00 35.89 3.49
2584 6369 0.321653 CGCAGTTTAAGGGGTCTGCT 60.322 55.000 12.81 0.00 35.89 4.24
2585 6370 0.321298 TCGCAGTTTAAGGGGTCTGC 60.321 55.000 6.02 6.02 34.84 4.26
2586 6371 2.178912 TTCGCAGTTTAAGGGGTCTG 57.821 50.000 0.00 0.00 0.00 3.51
2587 6372 2.158726 TGTTTCGCAGTTTAAGGGGTCT 60.159 45.455 0.00 0.00 0.00 3.85
2588 6373 2.031420 GTGTTTCGCAGTTTAAGGGGTC 60.031 50.000 0.00 0.00 0.00 4.46
2589 6374 1.951602 GTGTTTCGCAGTTTAAGGGGT 59.048 47.619 0.00 0.00 0.00 4.95
2590 6375 1.069500 CGTGTTTCGCAGTTTAAGGGG 60.069 52.381 0.00 0.00 0.00 4.79
2591 6376 1.868498 TCGTGTTTCGCAGTTTAAGGG 59.132 47.619 0.00 0.00 39.67 3.95
2592 6377 3.595709 TTCGTGTTTCGCAGTTTAAGG 57.404 42.857 0.00 0.00 39.67 2.69
2593 6378 4.203563 GGTTTTCGTGTTTCGCAGTTTAAG 59.796 41.667 0.00 0.00 39.67 1.85
2594 6379 4.097012 GGTTTTCGTGTTTCGCAGTTTAA 58.903 39.130 0.00 0.00 39.67 1.52
2595 6380 3.126514 TGGTTTTCGTGTTTCGCAGTTTA 59.873 39.130 0.00 0.00 39.67 2.01
2596 6381 2.095161 TGGTTTTCGTGTTTCGCAGTTT 60.095 40.909 0.00 0.00 39.67 2.66
2597 6382 1.469308 TGGTTTTCGTGTTTCGCAGTT 59.531 42.857 0.00 0.00 39.67 3.16
2598 6383 1.088306 TGGTTTTCGTGTTTCGCAGT 58.912 45.000 0.00 0.00 39.67 4.40
2599 6384 1.202087 TGTGGTTTTCGTGTTTCGCAG 60.202 47.619 0.00 0.00 39.67 5.18
2600 6385 0.803117 TGTGGTTTTCGTGTTTCGCA 59.197 45.000 0.00 0.00 39.67 5.10
2601 6386 2.113910 ATGTGGTTTTCGTGTTTCGC 57.886 45.000 0.00 0.00 39.67 4.70
2602 6387 6.291374 CCTTAAAATGTGGTTTTCGTGTTTCG 60.291 38.462 0.00 0.00 40.40 3.46
2603 6388 6.752815 TCCTTAAAATGTGGTTTTCGTGTTTC 59.247 34.615 0.00 0.00 40.40 2.78
2604 6389 6.631962 TCCTTAAAATGTGGTTTTCGTGTTT 58.368 32.000 0.00 0.00 40.40 2.83
2605 6390 6.210287 TCCTTAAAATGTGGTTTTCGTGTT 57.790 33.333 0.00 0.00 40.40 3.32
2606 6391 5.838531 TCCTTAAAATGTGGTTTTCGTGT 57.161 34.783 0.00 0.00 40.40 4.49
2607 6392 6.145371 CCAATCCTTAAAATGTGGTTTTCGTG 59.855 38.462 0.00 0.00 40.40 4.35
2608 6393 6.183360 ACCAATCCTTAAAATGTGGTTTTCGT 60.183 34.615 0.00 0.00 40.40 3.85
2609 6394 6.220201 ACCAATCCTTAAAATGTGGTTTTCG 58.780 36.000 0.00 0.00 40.40 3.46
2614 6399 6.739331 TCAAACCAATCCTTAAAATGTGGT 57.261 33.333 0.00 0.00 41.08 4.16
2615 6400 5.639082 GCTCAAACCAATCCTTAAAATGTGG 59.361 40.000 0.00 0.00 0.00 4.17
2628 6413 3.941483 CTCGACCATAAGCTCAAACCAAT 59.059 43.478 0.00 0.00 0.00 3.16
2646 6431 3.764237 AAGTTTAAAGGGTCTGCTCGA 57.236 42.857 0.00 0.00 0.00 4.04
2684 6469 3.421231 CGCGAGGAAGAATATACGTGAAC 59.579 47.826 0.00 0.00 34.05 3.18
2688 6473 2.877168 AGACGCGAGGAAGAATATACGT 59.123 45.455 15.93 0.00 34.85 3.57
2704 6489 1.651631 GCGAGAGAAAGAAGAAGACGC 59.348 52.381 0.00 0.00 37.11 5.19
2717 6502 0.738975 CGGTGAACATAGGCGAGAGA 59.261 55.000 0.00 0.00 0.00 3.10
2735 6520 2.376956 GTACAATCGAGCTAGCTGACG 58.623 52.381 24.99 20.45 0.00 4.35
2749 6534 1.551430 TGTCCACCGGATTCGTACAAT 59.449 47.619 9.46 0.00 32.73 2.71
2751 6536 0.967662 TTGTCCACCGGATTCGTACA 59.032 50.000 9.46 0.14 32.73 2.90
2752 6537 1.353076 GTTGTCCACCGGATTCGTAC 58.647 55.000 9.46 0.00 32.73 3.67
2759 6544 4.953868 CGTGCGTTGTCCACCGGA 62.954 66.667 9.46 0.00 0.00 5.14
2764 6549 1.142097 TCACTTCGTGCGTTGTCCA 59.858 52.632 0.00 0.00 32.98 4.02
2770 6555 2.066262 CTATTTGGTCACTTCGTGCGT 58.934 47.619 0.00 0.00 32.98 5.24
2780 6565 1.135199 GTCCTCGACGCTATTTGGTCA 60.135 52.381 0.00 0.00 32.74 4.02
2795 6591 1.803519 CTTCGTGCGAGCTGTCCTC 60.804 63.158 0.00 0.00 37.22 3.71
2819 6622 4.771356 ACGACGACGGCGATGTGG 62.771 66.667 32.70 14.93 44.46 4.17
2820 6623 3.238241 GACGACGACGGCGATGTG 61.238 66.667 32.70 6.10 44.46 3.21
2826 6629 4.157958 AGTAGCGACGACGACGGC 62.158 66.667 20.21 7.81 45.02 5.68
2841 6644 4.380023 GCTAGCTTATGGATCGATTCGAGT 60.380 45.833 14.81 3.08 39.91 4.18
2856 6659 1.653115 GCCGACGCTAGCTAGCTTA 59.347 57.895 36.02 8.09 46.85 3.09
2870 6673 1.278937 GAGATCGATTCGACGCCGA 59.721 57.895 11.56 0.00 43.96 5.54
2891 6694 4.273257 GGCGACGGGAGCTAGCTC 62.273 72.222 32.65 32.65 42.04 4.09
2945 6791 0.657840 CGTATTTGGCAGCTACAGGC 59.342 55.000 8.62 0.00 42.19 4.85
2946 6792 1.134521 TCCGTATTTGGCAGCTACAGG 60.135 52.381 8.62 9.58 0.00 4.00
2948 6794 1.742411 GCTCCGTATTTGGCAGCTACA 60.742 52.381 8.62 0.00 0.00 2.74
2949 6795 0.938008 GCTCCGTATTTGGCAGCTAC 59.062 55.000 0.00 0.00 0.00 3.58
2972 6839 2.045926 GGCGGCTTCATCACACCT 60.046 61.111 0.00 0.00 0.00 4.00
2978 6845 2.590007 AGATGCGGCGGCTTCATC 60.590 61.111 26.68 23.85 43.69 2.92
2982 6849 4.760047 AACGAGATGCGGCGGCTT 62.760 61.111 17.76 11.19 46.49 4.35
3012 6880 2.442272 ACCCCGCTCGTGCTAGAT 60.442 61.111 7.97 0.00 36.97 1.98
3041 6909 3.121030 GATTGAGCGCGTGCCTGT 61.121 61.111 19.02 0.00 44.31 4.00
3055 6923 7.500141 ACAAAATTCTACACTGCAAAAGGATT 58.500 30.769 0.00 0.00 0.00 3.01
3070 6938 5.630121 TCTTCCTGCTCCAACAAAATTCTA 58.370 37.500 0.00 0.00 0.00 2.10
3090 6958 2.158842 CCTCTCCAGCCGATGATTTCTT 60.159 50.000 0.00 0.00 0.00 2.52
3098 6966 2.238319 TACCACCCTCTCCAGCCGAT 62.238 60.000 0.00 0.00 0.00 4.18
3143 7014 1.153147 GAATCAGGTCCTTCCGCCC 60.153 63.158 0.00 0.00 41.99 6.13
3158 7029 5.127845 CGAGGATAGTATACAGGCCATGAAT 59.872 44.000 5.01 0.00 0.00 2.57
3234 7105 5.686397 CGTAAAAGTTTGCGGAACCATAAAA 59.314 36.000 6.40 0.00 41.52 1.52
3239 7110 2.759538 CGTAAAAGTTTGCGGAACCA 57.240 45.000 6.40 0.00 41.52 3.67
3268 7139 5.413309 ACTTGAACCAATTTTGTGTCCAA 57.587 34.783 0.00 0.00 0.00 3.53
3289 7160 7.486870 CCTATAAAATTTCAGCGGGTTTACAAC 59.513 37.037 0.00 0.00 0.00 3.32
3290 7161 7.177041 ACCTATAAAATTTCAGCGGGTTTACAA 59.823 33.333 0.00 0.00 0.00 2.41
3291 7162 6.660094 ACCTATAAAATTTCAGCGGGTTTACA 59.340 34.615 0.00 0.00 0.00 2.41
3312 7185 4.881361 ACCCCTTAAAAACACCAAACCTA 58.119 39.130 0.00 0.00 0.00 3.08
3346 7219 6.015265 GCGATTCTAGGGAGTTTATTAGGAGT 60.015 42.308 0.00 0.00 0.00 3.85
3350 7223 6.864165 GTCAGCGATTCTAGGGAGTTTATTAG 59.136 42.308 0.00 0.00 0.00 1.73
3353 7226 4.896482 AGTCAGCGATTCTAGGGAGTTTAT 59.104 41.667 0.00 0.00 0.00 1.40
3354 7227 4.279145 AGTCAGCGATTCTAGGGAGTTTA 58.721 43.478 0.00 0.00 0.00 2.01
3355 7228 3.100671 AGTCAGCGATTCTAGGGAGTTT 58.899 45.455 0.00 0.00 0.00 2.66
3356 7229 2.691011 GAGTCAGCGATTCTAGGGAGTT 59.309 50.000 0.00 0.00 0.00 3.01
3357 7230 2.303175 GAGTCAGCGATTCTAGGGAGT 58.697 52.381 0.00 0.00 0.00 3.85
3358 7231 1.265635 CGAGTCAGCGATTCTAGGGAG 59.734 57.143 0.00 0.00 0.00 4.30
3359 7232 1.309950 CGAGTCAGCGATTCTAGGGA 58.690 55.000 0.00 0.00 0.00 4.20
3360 7233 1.025812 ACGAGTCAGCGATTCTAGGG 58.974 55.000 0.00 0.00 34.83 3.53
3361 7234 1.268794 CCACGAGTCAGCGATTCTAGG 60.269 57.143 0.00 0.00 34.83 3.02
3362 7235 1.862008 GCCACGAGTCAGCGATTCTAG 60.862 57.143 0.00 0.00 34.83 2.43
3363 7236 0.100682 GCCACGAGTCAGCGATTCTA 59.899 55.000 0.00 0.00 34.83 2.10
3364 7237 1.153745 GCCACGAGTCAGCGATTCT 60.154 57.895 0.00 0.00 34.83 2.40
3365 7238 0.737715 AAGCCACGAGTCAGCGATTC 60.738 55.000 0.00 0.00 34.83 2.52
3366 7239 1.016130 CAAGCCACGAGTCAGCGATT 61.016 55.000 0.00 0.00 34.83 3.34
3367 7240 1.446792 CAAGCCACGAGTCAGCGAT 60.447 57.895 0.00 0.00 34.83 4.58
3368 7241 2.049156 CAAGCCACGAGTCAGCGA 60.049 61.111 0.00 0.00 34.83 4.93
3369 7242 2.486636 TACCAAGCCACGAGTCAGCG 62.487 60.000 0.00 0.00 37.29 5.18
3370 7243 0.320421 TTACCAAGCCACGAGTCAGC 60.320 55.000 0.00 0.00 0.00 4.26
3371 7244 2.271800 GATTACCAAGCCACGAGTCAG 58.728 52.381 0.00 0.00 0.00 3.51
3372 7245 1.403647 CGATTACCAAGCCACGAGTCA 60.404 52.381 0.00 0.00 0.00 3.41
3373 7246 1.278238 CGATTACCAAGCCACGAGTC 58.722 55.000 0.00 0.00 0.00 3.36
3374 7247 0.739813 GCGATTACCAAGCCACGAGT 60.740 55.000 0.00 0.00 0.00 4.18
3375 7248 0.460284 AGCGATTACCAAGCCACGAG 60.460 55.000 0.00 0.00 0.00 4.18
3376 7249 0.739462 CAGCGATTACCAAGCCACGA 60.739 55.000 0.00 0.00 0.00 4.35
3377 7250 1.715585 CAGCGATTACCAAGCCACG 59.284 57.895 0.00 0.00 0.00 4.94
3378 7251 1.429423 GCAGCGATTACCAAGCCAC 59.571 57.895 0.00 0.00 0.00 5.01
3379 7252 1.748879 GGCAGCGATTACCAAGCCA 60.749 57.895 0.00 0.00 41.63 4.75
3380 7253 2.481471 GGGCAGCGATTACCAAGCC 61.481 63.158 0.00 0.00 41.29 4.35
3381 7254 2.823829 CGGGCAGCGATTACCAAGC 61.824 63.158 0.00 0.00 0.00 4.01
3382 7255 1.153449 TCGGGCAGCGATTACCAAG 60.153 57.895 0.00 0.00 0.00 3.61
3383 7256 1.153449 CTCGGGCAGCGATTACCAA 60.153 57.895 0.00 0.00 0.00 3.67
3384 7257 2.499205 CTCGGGCAGCGATTACCA 59.501 61.111 0.00 0.00 0.00 3.25
3385 7258 2.280186 CCTCGGGCAGCGATTACC 60.280 66.667 0.00 0.00 0.00 2.85
3386 7259 1.300233 CTCCTCGGGCAGCGATTAC 60.300 63.158 0.00 0.00 0.00 1.89
3387 7260 2.498941 CCTCCTCGGGCAGCGATTA 61.499 63.158 0.00 0.00 0.00 1.75
3388 7261 3.854669 CCTCCTCGGGCAGCGATT 61.855 66.667 0.00 0.00 0.00 3.34
3389 7262 2.715181 TATCCTCCTCGGGCAGCGAT 62.715 60.000 0.00 0.00 0.00 4.58
3390 7263 2.715181 ATATCCTCCTCGGGCAGCGA 62.715 60.000 0.00 0.00 0.00 4.93
3391 7264 0.965866 TATATCCTCCTCGGGCAGCG 60.966 60.000 0.00 0.00 0.00 5.18
3392 7265 1.137872 CATATATCCTCCTCGGGCAGC 59.862 57.143 0.00 0.00 0.00 5.25
3393 7266 1.137872 GCATATATCCTCCTCGGGCAG 59.862 57.143 0.00 0.00 0.00 4.85
3394 7267 1.195115 GCATATATCCTCCTCGGGCA 58.805 55.000 0.00 0.00 0.00 5.36
3395 7268 1.195115 TGCATATATCCTCCTCGGGC 58.805 55.000 0.00 0.00 0.00 6.13
3396 7269 2.103771 CCATGCATATATCCTCCTCGGG 59.896 54.545 0.00 0.00 0.00 5.14
3397 7270 2.103771 CCCATGCATATATCCTCCTCGG 59.896 54.545 0.00 0.00 0.00 4.63
3398 7271 3.033909 TCCCATGCATATATCCTCCTCG 58.966 50.000 0.00 0.00 0.00 4.63
3399 7272 5.189180 GTTTCCCATGCATATATCCTCCTC 58.811 45.833 0.00 0.00 0.00 3.71
3400 7273 4.323792 CGTTTCCCATGCATATATCCTCCT 60.324 45.833 0.00 0.00 0.00 3.69
3401 7274 3.941483 CGTTTCCCATGCATATATCCTCC 59.059 47.826 0.00 0.00 0.00 4.30
3402 7275 4.579869 ACGTTTCCCATGCATATATCCTC 58.420 43.478 0.00 0.00 0.00 3.71
3403 7276 4.640771 ACGTTTCCCATGCATATATCCT 57.359 40.909 0.00 0.00 0.00 3.24
3404 7277 5.705609 AAACGTTTCCCATGCATATATCC 57.294 39.130 7.96 0.00 0.00 2.59
3405 7278 6.430000 ACCTAAACGTTTCCCATGCATATATC 59.570 38.462 18.42 0.00 0.00 1.63
3406 7279 6.303839 ACCTAAACGTTTCCCATGCATATAT 58.696 36.000 18.42 0.00 0.00 0.86
3407 7280 5.686753 ACCTAAACGTTTCCCATGCATATA 58.313 37.500 18.42 0.00 0.00 0.86
3408 7281 4.532834 ACCTAAACGTTTCCCATGCATAT 58.467 39.130 18.42 0.00 0.00 1.78
3409 7282 3.958018 ACCTAAACGTTTCCCATGCATA 58.042 40.909 18.42 0.00 0.00 3.14
3410 7283 2.802719 ACCTAAACGTTTCCCATGCAT 58.197 42.857 18.42 0.00 0.00 3.96
3411 7284 2.279935 ACCTAAACGTTTCCCATGCA 57.720 45.000 18.42 0.00 0.00 3.96
3412 7285 2.094734 CGTACCTAAACGTTTCCCATGC 59.905 50.000 18.42 4.83 38.07 4.06
3413 7286 2.094734 GCGTACCTAAACGTTTCCCATG 59.905 50.000 18.42 8.05 44.64 3.66
3414 7287 2.349590 GCGTACCTAAACGTTTCCCAT 58.650 47.619 18.42 4.60 44.64 4.00
3415 7288 1.607767 GGCGTACCTAAACGTTTCCCA 60.608 52.381 18.42 0.00 44.64 4.37
3416 7289 1.078709 GGCGTACCTAAACGTTTCCC 58.921 55.000 18.42 4.29 44.64 3.97
3417 7290 0.715551 CGGCGTACCTAAACGTTTCC 59.284 55.000 18.42 9.61 44.64 3.13
3418 7291 0.093535 GCGGCGTACCTAAACGTTTC 59.906 55.000 18.42 1.39 44.64 2.78
3419 7292 0.599728 TGCGGCGTACCTAAACGTTT 60.600 50.000 18.90 18.90 44.64 3.60
3420 7293 1.006337 TGCGGCGTACCTAAACGTT 60.006 52.632 9.37 0.00 44.64 3.99
3421 7294 1.734117 GTGCGGCGTACCTAAACGT 60.734 57.895 17.60 0.00 44.64 3.99
3422 7295 2.447070 GGTGCGGCGTACCTAAACG 61.447 63.158 35.04 0.00 45.58 3.60
3423 7296 2.447070 CGGTGCGGCGTACCTAAAC 61.447 63.158 37.25 16.71 36.17 2.01
3424 7297 2.125991 CGGTGCGGCGTACCTAAA 60.126 61.111 37.25 1.46 36.17 1.85
3425 7298 4.132441 CCGGTGCGGCGTACCTAA 62.132 66.667 37.25 3.22 41.17 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.