Multiple sequence alignment - TraesCS6A01G351700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G351700 chr6A 100.000 3329 0 0 1 3329 584592472 584595800 0.000000e+00 6148.0
1 TraesCS6A01G351700 chr6A 89.582 1459 108 15 922 2355 584757957 584759396 0.000000e+00 1812.0
2 TraesCS6A01G351700 chr6A 89.474 1463 111 16 914 2355 584695528 584694088 0.000000e+00 1808.0
3 TraesCS6A01G351700 chr6A 91.277 791 58 5 1576 2355 584717354 584716564 0.000000e+00 1068.0
4 TraesCS6A01G351700 chr6A 85.824 522 41 10 922 1429 584717867 584717365 1.060000e-144 523.0
5 TraesCS6A01G351700 chr6A 83.951 243 35 3 196 436 377181416 377181176 2.580000e-56 230.0
6 TraesCS6A01G351700 chr6A 96.552 87 3 0 3241 3327 91794955 91795041 9.630000e-31 145.0
7 TraesCS6A01G351700 chr6A 95.506 89 4 0 3241 3329 273262236 273262148 3.460000e-30 143.0
8 TraesCS6A01G351700 chr6D 92.407 2700 114 42 1 2647 436419988 436422649 0.000000e+00 3766.0
9 TraesCS6A01G351700 chr6D 90.778 1453 98 13 921 2355 436638072 436639506 0.000000e+00 1908.0
10 TraesCS6A01G351700 chr6D 95.526 380 14 2 2651 3029 436424472 436424849 3.670000e-169 604.0
11 TraesCS6A01G351700 chr6D 85.464 571 51 10 924 1479 436474437 436473884 1.730000e-157 566.0
12 TraesCS6A01G351700 chr6D 98.214 224 4 0 3019 3242 436425716 436425939 3.110000e-105 392.0
13 TraesCS6A01G351700 chr6D 94.231 52 2 1 3189 3239 436535401 436535350 9.900000e-11 78.7
14 TraesCS6A01G351700 chr3B 90.093 1504 119 16 921 2408 663573495 663574984 0.000000e+00 1925.0
15 TraesCS6A01G351700 chr3B 79.377 257 46 5 589 839 776503123 776503378 1.230000e-39 174.0
16 TraesCS6A01G351700 chr3D 90.106 1506 110 17 919 2408 502158160 502159642 0.000000e+00 1919.0
17 TraesCS6A01G351700 chr6B 90.126 1509 96 17 924 2407 659808739 659810219 0.000000e+00 1912.0
18 TraesCS6A01G351700 chr6B 89.964 548 51 2 1818 2362 659653863 659653317 0.000000e+00 704.0
19 TraesCS6A01G351700 chr6B 79.514 288 42 6 163 435 575936139 575935854 4.380000e-44 189.0
20 TraesCS6A01G351700 chr6B 97.059 34 1 0 163 196 133162012 133161979 1.290000e-04 58.4
21 TraesCS6A01G351700 chr6B 97.059 34 1 0 163 196 707525776 707525809 1.290000e-04 58.4
22 TraesCS6A01G351700 chr1D 81.887 795 88 27 2177 2948 414876457 414877218 1.310000e-173 619.0
23 TraesCS6A01G351700 chr1D 82.392 301 31 9 2949 3242 414877258 414877543 3.320000e-60 243.0
24 TraesCS6A01G351700 chr1D 82.308 260 41 5 196 452 467929934 467930191 1.550000e-53 220.0
25 TraesCS6A01G351700 chr1D 77.912 249 50 4 595 839 198165514 198165267 2.070000e-32 150.0
26 TraesCS6A01G351700 chr1A 81.390 806 89 38 2177 2948 511606776 511607554 4.750000e-168 601.0
27 TraesCS6A01G351700 chr1A 90.000 130 13 0 3113 3242 511612923 511613052 5.710000e-38 169.0
28 TraesCS6A01G351700 chr1B 84.496 258 35 4 197 452 397836186 397836440 1.980000e-62 250.0
29 TraesCS6A01G351700 chr1B 95.506 89 4 0 3241 3329 200104277 200104189 3.460000e-30 143.0
30 TraesCS6A01G351700 chr5D 84.362 243 34 3 196 436 422014416 422014656 5.550000e-58 235.0
31 TraesCS6A01G351700 chr5D 79.710 207 42 0 598 804 513647548 513647342 2.070000e-32 150.0
32 TraesCS6A01G351700 chr4A 84.362 243 34 4 196 436 572708671 572708431 5.550000e-58 235.0
33 TraesCS6A01G351700 chr2A 84.232 241 34 3 198 436 692706231 692706469 7.180000e-57 231.0
34 TraesCS6A01G351700 chr2A 83.951 243 35 4 196 436 653037641 653037401 2.580000e-56 230.0
35 TraesCS6A01G351700 chr2A 79.522 293 43 8 158 436 718727610 718727899 3.390000e-45 193.0
36 TraesCS6A01G351700 chr2A 96.629 89 3 0 3241 3329 639985241 639985153 7.440000e-32 148.0
37 TraesCS6A01G351700 chr2A 95.455 88 4 0 3241 3328 12205652 12205739 1.250000e-29 141.0
38 TraesCS6A01G351700 chr2A 94.444 90 5 0 3240 3329 639977047 639976958 4.480000e-29 139.0
39 TraesCS6A01G351700 chr2A 93.333 90 6 0 3240 3329 639969675 639969586 2.080000e-27 134.0
40 TraesCS6A01G351700 chr7B 83.951 243 35 3 196 436 553088717 553088477 2.580000e-56 230.0
41 TraesCS6A01G351700 chr7B 75.403 248 55 6 595 839 104747843 104747599 7.550000e-22 115.0
42 TraesCS6A01G351700 chr7B 97.059 34 1 0 163 196 6858487 6858454 1.290000e-04 58.4
43 TraesCS6A01G351700 chr5A 80.277 289 38 8 163 436 394443893 394443609 2.030000e-47 200.0
44 TraesCS6A01G351700 chr5A 97.753 89 2 0 3241 3329 242946499 242946411 1.600000e-33 154.0
45 TraesCS6A01G351700 chr4B 82.160 213 35 2 595 804 498407255 498407043 2.640000e-41 180.0
46 TraesCS6A01G351700 chr4B 81.026 195 34 2 595 787 580813703 580813896 5.750000e-33 152.0
47 TraesCS6A01G351700 chr4B 81.818 176 31 1 630 804 25011652 25011827 2.680000e-31 147.0
48 TraesCS6A01G351700 chrUn 78.547 289 45 9 163 436 87042861 87042575 1.230000e-39 174.0
49 TraesCS6A01G351700 chr3A 85.517 145 21 0 660 804 503702212 503702356 5.750000e-33 152.0
50 TraesCS6A01G351700 chr7D 94.382 89 5 0 3241 3329 412542310 412542398 1.610000e-28 137.0
51 TraesCS6A01G351700 chr7A 80.220 182 33 3 648 828 636124124 636123945 2.080000e-27 134.0
52 TraesCS6A01G351700 chr2B 94.828 58 2 1 163 220 775838585 775838641 4.570000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G351700 chr6A 584592472 584595800 3328 False 6148.000000 6148 100.000000 1 3329 1 chr6A.!!$F2 3328
1 TraesCS6A01G351700 chr6A 584757957 584759396 1439 False 1812.000000 1812 89.582000 922 2355 1 chr6A.!!$F3 1433
2 TraesCS6A01G351700 chr6A 584694088 584695528 1440 True 1808.000000 1808 89.474000 914 2355 1 chr6A.!!$R3 1441
3 TraesCS6A01G351700 chr6A 584716564 584717867 1303 True 795.500000 1068 88.550500 922 2355 2 chr6A.!!$R4 1433
4 TraesCS6A01G351700 chr6D 436638072 436639506 1434 False 1908.000000 1908 90.778000 921 2355 1 chr6D.!!$F1 1434
5 TraesCS6A01G351700 chr6D 436419988 436425939 5951 False 1587.333333 3766 95.382333 1 3242 3 chr6D.!!$F2 3241
6 TraesCS6A01G351700 chr6D 436473884 436474437 553 True 566.000000 566 85.464000 924 1479 1 chr6D.!!$R1 555
7 TraesCS6A01G351700 chr3B 663573495 663574984 1489 False 1925.000000 1925 90.093000 921 2408 1 chr3B.!!$F1 1487
8 TraesCS6A01G351700 chr3D 502158160 502159642 1482 False 1919.000000 1919 90.106000 919 2408 1 chr3D.!!$F1 1489
9 TraesCS6A01G351700 chr6B 659808739 659810219 1480 False 1912.000000 1912 90.126000 924 2407 1 chr6B.!!$F1 1483
10 TraesCS6A01G351700 chr6B 659653317 659653863 546 True 704.000000 704 89.964000 1818 2362 1 chr6B.!!$R3 544
11 TraesCS6A01G351700 chr1D 414876457 414877543 1086 False 431.000000 619 82.139500 2177 3242 2 chr1D.!!$F2 1065
12 TraesCS6A01G351700 chr1A 511606776 511607554 778 False 601.000000 601 81.390000 2177 2948 1 chr1A.!!$F1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 744 0.179108 CGACGGAAATGTCTCCTCCC 60.179 60.000 0.00 0.0 36.71 4.30 F
956 988 1.228033 TCGGAGTCGATCGGGCATA 60.228 57.895 16.41 0.0 40.88 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2065 0.748450 CCGCCCTCGTGTCCTTTATA 59.252 55.0 0.0 0.0 0.00 0.98 R
2950 4960 0.461693 GATCACTGGAGAGCACCTGC 60.462 60.0 0.0 0.0 42.49 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.907739 CGGTCACATGTGATCCCCT 59.092 57.895 30.10 0.00 42.18 4.79
56 57 1.226311 GATCCCCTTCCCATGGAACT 58.774 55.000 15.22 0.00 36.71 3.01
94 95 9.976255 GTATTTTCGTATTTGTATTGCACTACA 57.024 29.630 12.47 12.47 0.00 2.74
112 114 6.374333 GCACTACAGGGAAATAAATGAAGTCA 59.626 38.462 0.00 0.00 0.00 3.41
113 115 7.414540 GCACTACAGGGAAATAAATGAAGTCAG 60.415 40.741 0.00 0.00 0.00 3.51
222 224 1.569072 AGGGTTCAAGTCCTGGTGTTT 59.431 47.619 0.00 0.00 31.11 2.83
223 225 1.681264 GGGTTCAAGTCCTGGTGTTTG 59.319 52.381 0.00 0.00 0.00 2.93
229 231 6.263617 GGTTCAAGTCCTGGTGTTTGTATTTA 59.736 38.462 0.00 0.00 0.00 1.40
280 282 2.145397 TGCGTTCAGTAGGAGGAGAT 57.855 50.000 0.00 0.00 0.00 2.75
288 290 2.621055 CAGTAGGAGGAGATGTTCTCGG 59.379 54.545 0.00 0.00 44.28 4.63
326 330 5.865552 CCTAGTGACTTCGTAAAATCCGAAA 59.134 40.000 0.00 0.00 43.03 3.46
349 353 6.849085 AATGATATATCGGCTCAGTCTCTT 57.151 37.500 8.19 0.00 0.00 2.85
351 355 5.316987 TGATATATCGGCTCAGTCTCTTGA 58.683 41.667 8.19 0.00 0.00 3.02
374 378 4.585390 AGGTACTCATAGGAGGTAGGGTA 58.415 47.826 9.55 0.00 45.81 3.69
378 382 3.142217 ACTCATAGGAGGTAGGGTATGCA 59.858 47.826 9.55 0.00 45.81 3.96
396 400 3.865446 TGCATGTGTGAGTTCATAGAGG 58.135 45.455 0.00 0.00 0.00 3.69
426 430 2.959586 CGCGTATATATGAGCGCTTG 57.040 50.000 13.26 7.35 46.56 4.01
427 431 2.251040 CGCGTATATATGAGCGCTTGT 58.749 47.619 13.26 5.98 46.56 3.16
436 440 0.319555 TGAGCGCTTGTGTCTGTACC 60.320 55.000 13.26 0.00 0.00 3.34
440 444 0.596600 CGCTTGTGTCTGTACCGTGT 60.597 55.000 0.00 0.00 0.00 4.49
452 456 6.183360 TGTCTGTACCGTGTTTACAAAGAAAC 60.183 38.462 0.00 0.00 39.35 2.78
457 461 6.175712 ACCGTGTTTACAAAGAAACGTAAA 57.824 33.333 0.00 0.00 41.36 2.01
458 462 6.784176 ACCGTGTTTACAAAGAAACGTAAAT 58.216 32.000 0.00 0.00 41.36 1.40
462 466 8.949953 CGTGTTTACAAAGAAACGTAAATTGAT 58.050 29.630 9.40 0.00 41.36 2.57
544 548 1.792118 GACACCGGGCTGTGGTTTTC 61.792 60.000 6.32 1.35 40.62 2.29
545 549 1.528309 CACCGGGCTGTGGTTTTCT 60.528 57.895 6.32 0.00 37.72 2.52
549 553 1.138069 CCGGGCTGTGGTTTTCTTTTT 59.862 47.619 0.00 0.00 0.00 1.94
573 577 6.210396 TCGAACATAGTATAAATGCAAGCG 57.790 37.500 0.00 0.00 0.00 4.68
576 580 6.905076 CGAACATAGTATAAATGCAAGCGTTT 59.095 34.615 15.62 15.62 38.52 3.60
586 590 5.728351 AATGCAAGCGTTTATACATACGT 57.272 34.783 0.00 0.00 39.80 3.57
587 591 4.765281 TGCAAGCGTTTATACATACGTC 57.235 40.909 0.00 0.00 39.80 4.34
588 592 3.241091 TGCAAGCGTTTATACATACGTCG 59.759 43.478 0.00 0.00 39.80 5.12
589 593 3.769058 CAAGCGTTTATACATACGTCGC 58.231 45.455 0.00 0.00 39.80 5.19
590 594 2.039085 AGCGTTTATACATACGTCGCG 58.961 47.619 0.00 0.00 45.32 5.87
591 595 1.775208 GCGTTTATACATACGTCGCGT 59.225 47.619 5.77 9.64 44.35 6.01
592 596 2.214020 GCGTTTATACATACGTCGCGTT 59.786 45.455 5.77 0.00 41.54 4.84
593 597 3.301133 GCGTTTATACATACGTCGCGTTT 60.301 43.478 5.77 0.39 41.54 3.60
594 598 4.086327 GCGTTTATACATACGTCGCGTTTA 60.086 41.667 5.77 0.00 41.54 2.01
595 599 5.386323 GCGTTTATACATACGTCGCGTTTAT 60.386 40.000 5.77 0.00 41.54 1.40
596 600 6.183359 GCGTTTATACATACGTCGCGTTTATA 60.183 38.462 5.77 6.95 41.54 0.98
597 601 7.460120 GCGTTTATACATACGTCGCGTTTATAT 60.460 37.037 5.77 4.96 41.54 0.86
615 619 8.476925 CGTTTATATATACGCGCATACAATCAT 58.523 33.333 5.73 0.00 0.00 2.45
627 631 4.825422 CATACAATCATCCCTATGAGCGT 58.175 43.478 0.00 0.00 45.17 5.07
633 637 3.028130 TCATCCCTATGAGCGTACACAA 58.972 45.455 0.00 0.00 37.20 3.33
634 638 3.449377 TCATCCCTATGAGCGTACACAAA 59.551 43.478 0.00 0.00 37.20 2.83
635 639 4.100963 TCATCCCTATGAGCGTACACAAAT 59.899 41.667 0.00 0.00 37.20 2.32
638 642 4.056050 CCCTATGAGCGTACACAAATACC 58.944 47.826 0.00 0.00 0.00 2.73
639 643 4.056050 CCTATGAGCGTACACAAATACCC 58.944 47.826 0.00 0.00 0.00 3.69
640 644 3.906720 ATGAGCGTACACAAATACCCT 57.093 42.857 0.00 0.00 0.00 4.34
641 645 5.010314 CCTATGAGCGTACACAAATACCCTA 59.990 44.000 0.00 0.00 0.00 3.53
643 647 5.347620 TGAGCGTACACAAATACCCTATT 57.652 39.130 0.00 0.00 0.00 1.73
644 648 5.736813 TGAGCGTACACAAATACCCTATTT 58.263 37.500 0.00 0.00 38.84 1.40
728 734 0.527817 GCCTCATCGTCGACGGAAAT 60.528 55.000 35.05 20.23 40.29 2.17
738 744 0.179108 CGACGGAAATGTCTCCTCCC 60.179 60.000 0.00 0.00 36.71 4.30
746 752 3.710209 AATGTCTCCTCCCACTGAAAG 57.290 47.619 0.00 0.00 42.29 2.62
805 813 6.515272 AATGCGAACATAAGGACTTGAATT 57.485 33.333 0.00 0.00 34.62 2.17
808 816 6.403049 TGCGAACATAAGGACTTGAATTCTA 58.597 36.000 7.05 0.00 0.00 2.10
809 817 6.535150 TGCGAACATAAGGACTTGAATTCTAG 59.465 38.462 14.32 14.32 0.00 2.43
812 820 7.759886 CGAACATAAGGACTTGAATTCTAGTGA 59.240 37.037 24.26 9.36 32.36 3.41
814 822 8.367660 ACATAAGGACTTGAATTCTAGTGAGA 57.632 34.615 24.26 9.36 32.36 3.27
815 823 8.254508 ACATAAGGACTTGAATTCTAGTGAGAC 58.745 37.037 24.26 11.43 32.36 3.36
816 824 6.926630 AAGGACTTGAATTCTAGTGAGACT 57.073 37.500 24.26 14.41 32.36 3.24
817 825 9.702253 ATAAGGACTTGAATTCTAGTGAGACTA 57.298 33.333 24.26 10.40 32.36 2.59
954 986 3.209812 CTCGGAGTCGATCGGGCA 61.210 66.667 16.41 0.00 45.04 5.36
956 988 1.228033 TCGGAGTCGATCGGGCATA 60.228 57.895 16.41 0.00 40.88 3.14
1481 1561 1.985662 CGGCCAGTACCACACCCTA 60.986 63.158 2.24 0.00 0.00 3.53
1697 1783 3.710722 CCCAGGAAGCACGGCTCT 61.711 66.667 0.00 0.00 38.25 4.09
1892 1978 2.107750 CGAGCCATCACGGAGCAT 59.892 61.111 0.00 0.00 36.56 3.79
2132 2218 2.219325 CTCTCCTGCTCACGGACACC 62.219 65.000 0.00 0.00 0.00 4.16
2208 2294 1.177401 GGTGAAGAAGATTGGTGGCC 58.823 55.000 0.00 0.00 0.00 5.36
2255 2341 1.153568 CTCCGGCAATCAGCTCGAA 60.154 57.895 0.00 0.00 44.79 3.71
2361 2453 7.014905 TGCTTGTTGTTCTTCTACTAGGAACTA 59.985 37.037 9.34 1.24 41.75 2.24
2363 2455 9.360093 CTTGTTGTTCTTCTACTAGGAACTATG 57.640 37.037 9.34 0.00 41.70 2.23
2593 2718 4.747108 CAGTCCATAAGAAACATCTAGCCG 59.253 45.833 0.00 0.00 0.00 5.52
2630 2763 2.258286 GCCACAAGCGCGGAAAAT 59.742 55.556 8.83 0.00 0.00 1.82
2633 2766 1.154035 CACAAGCGCGGAAAATCCC 60.154 57.895 8.83 0.00 31.13 3.85
2647 2780 5.467063 CGGAAAATCCCTTTAGCATCTACTC 59.533 44.000 0.00 0.00 31.13 2.59
2649 2782 5.615925 AAATCCCTTTAGCATCTACTCGT 57.384 39.130 0.00 0.00 0.00 4.18
2667 4619 6.263516 ACTCGTACTAGTTGTCTATGCAAA 57.736 37.500 0.00 0.00 0.00 3.68
2726 4683 7.333528 TGTAGAAACTGAGAAATTGCAAGTT 57.666 32.000 12.63 12.63 0.00 2.66
2855 4812 8.826710 CGCTCTGGTAAATGATGTAAGAATTTA 58.173 33.333 0.00 0.00 0.00 1.40
2882 4839 5.710984 ACGTACCTCATATATAGCAAGCAC 58.289 41.667 0.00 0.00 0.00 4.40
2950 4960 6.438259 TCTGAAACTGAAGGAGTATCTACG 57.562 41.667 0.00 0.00 33.09 3.51
2988 5000 5.641709 TGATCTACACATTCAGTCTCGTTC 58.358 41.667 0.00 0.00 0.00 3.95
3136 6026 7.623630 TCTCATGGTTATGAATGACTTCTTCA 58.376 34.615 0.00 0.00 42.48 3.02
3242 6132 1.845809 CTTCGTCACTGCCCTTGTGC 61.846 60.000 0.00 0.00 35.58 4.57
3243 6133 3.716006 CGTCACTGCCCTTGTGCG 61.716 66.667 0.00 0.00 35.58 5.34
3244 6134 4.030452 GTCACTGCCCTTGTGCGC 62.030 66.667 0.00 0.00 35.58 6.09
3267 6157 3.857854 CGCGCTTGCTGCTACCTG 61.858 66.667 5.56 0.00 40.11 4.00
3268 6158 4.171416 GCGCTTGCTGCTACCTGC 62.171 66.667 0.00 0.00 40.11 4.85
3269 6159 2.435586 CGCTTGCTGCTACCTGCT 60.436 61.111 0.00 0.00 43.37 4.24
3270 6160 1.153568 CGCTTGCTGCTACCTGCTA 60.154 57.895 0.00 0.00 43.37 3.49
3271 6161 1.424493 CGCTTGCTGCTACCTGCTAC 61.424 60.000 0.00 0.00 43.37 3.58
3272 6162 0.107945 GCTTGCTGCTACCTGCTACT 60.108 55.000 0.00 0.00 43.37 2.57
3273 6163 1.649664 CTTGCTGCTACCTGCTACTG 58.350 55.000 0.00 0.00 43.37 2.74
3274 6164 0.391661 TTGCTGCTACCTGCTACTGC 60.392 55.000 0.00 0.00 43.37 4.40
3275 6165 1.260538 TGCTGCTACCTGCTACTGCT 61.261 55.000 0.00 0.00 43.37 4.24
3276 6166 0.809241 GCTGCTACCTGCTACTGCTG 60.809 60.000 0.00 0.00 43.37 4.41
3277 6167 0.534412 CTGCTACCTGCTACTGCTGT 59.466 55.000 0.66 0.66 43.37 4.40
3278 6168 0.976641 TGCTACCTGCTACTGCTGTT 59.023 50.000 0.09 0.00 43.37 3.16
3279 6169 1.338105 TGCTACCTGCTACTGCTGTTG 60.338 52.381 0.09 0.58 43.37 3.33
3280 6170 1.363744 CTACCTGCTACTGCTGTTGC 58.636 55.000 20.07 20.07 43.39 4.17
3281 6171 0.036388 TACCTGCTACTGCTGTTGCC 60.036 55.000 22.88 9.31 42.66 4.52
3282 6172 1.002868 CCTGCTACTGCTGTTGCCT 60.003 57.895 22.88 0.00 42.66 4.75
3283 6173 1.023513 CCTGCTACTGCTGTTGCCTC 61.024 60.000 22.88 1.97 42.66 4.70
3284 6174 0.036577 CTGCTACTGCTGTTGCCTCT 60.037 55.000 22.88 0.00 42.66 3.69
3285 6175 0.397941 TGCTACTGCTGTTGCCTCTT 59.602 50.000 22.88 0.00 42.66 2.85
3286 6176 1.202806 TGCTACTGCTGTTGCCTCTTT 60.203 47.619 22.88 0.00 42.66 2.52
3287 6177 1.466558 GCTACTGCTGTTGCCTCTTTC 59.533 52.381 17.02 0.00 38.62 2.62
3288 6178 2.873649 GCTACTGCTGTTGCCTCTTTCT 60.874 50.000 17.02 0.00 38.62 2.52
3289 6179 3.617531 GCTACTGCTGTTGCCTCTTTCTA 60.618 47.826 17.02 0.00 38.62 2.10
3290 6180 2.772287 ACTGCTGTTGCCTCTTTCTAC 58.228 47.619 0.00 0.00 38.71 2.59
3291 6181 2.370189 ACTGCTGTTGCCTCTTTCTACT 59.630 45.455 0.00 0.00 38.71 2.57
3292 6182 3.578716 ACTGCTGTTGCCTCTTTCTACTA 59.421 43.478 0.00 0.00 38.71 1.82
3293 6183 3.926616 TGCTGTTGCCTCTTTCTACTAC 58.073 45.455 0.00 0.00 38.71 2.73
3294 6184 3.263261 GCTGTTGCCTCTTTCTACTACC 58.737 50.000 0.00 0.00 0.00 3.18
3295 6185 3.055747 GCTGTTGCCTCTTTCTACTACCT 60.056 47.826 0.00 0.00 0.00 3.08
3296 6186 4.499183 CTGTTGCCTCTTTCTACTACCTG 58.501 47.826 0.00 0.00 0.00 4.00
3297 6187 3.263261 GTTGCCTCTTTCTACTACCTGC 58.737 50.000 0.00 0.00 0.00 4.85
3298 6188 1.831736 TGCCTCTTTCTACTACCTGCC 59.168 52.381 0.00 0.00 0.00 4.85
3299 6189 1.202428 GCCTCTTTCTACTACCTGCCG 60.202 57.143 0.00 0.00 0.00 5.69
3300 6190 1.202428 CCTCTTTCTACTACCTGCCGC 60.202 57.143 0.00 0.00 0.00 6.53
3301 6191 1.751924 CTCTTTCTACTACCTGCCGCT 59.248 52.381 0.00 0.00 0.00 5.52
3302 6192 1.476891 TCTTTCTACTACCTGCCGCTG 59.523 52.381 0.00 0.00 0.00 5.18
3303 6193 0.108329 TTTCTACTACCTGCCGCTGC 60.108 55.000 0.00 0.00 38.26 5.25
3304 6194 0.970937 TTCTACTACCTGCCGCTGCT 60.971 55.000 0.70 0.00 38.71 4.24
3305 6195 1.227089 CTACTACCTGCCGCTGCTG 60.227 63.158 0.70 0.23 38.71 4.41
3306 6196 1.949847 CTACTACCTGCCGCTGCTGT 61.950 60.000 0.70 1.50 38.71 4.40
3307 6197 0.681887 TACTACCTGCCGCTGCTGTA 60.682 55.000 0.70 2.63 38.71 2.74
3308 6198 1.330655 ACTACCTGCCGCTGCTGTAT 61.331 55.000 0.70 0.00 38.71 2.29
3309 6199 0.179073 CTACCTGCCGCTGCTGTATT 60.179 55.000 0.70 0.00 38.71 1.89
3310 6200 0.461870 TACCTGCCGCTGCTGTATTG 60.462 55.000 0.70 0.00 38.71 1.90
3311 6201 1.746615 CCTGCCGCTGCTGTATTGT 60.747 57.895 0.70 0.00 38.71 2.71
3312 6202 1.308069 CCTGCCGCTGCTGTATTGTT 61.308 55.000 0.70 0.00 38.71 2.83
3313 6203 0.179181 CTGCCGCTGCTGTATTGTTG 60.179 55.000 0.70 0.00 38.71 3.33
3314 6204 0.888736 TGCCGCTGCTGTATTGTTGT 60.889 50.000 0.70 0.00 38.71 3.32
3315 6205 0.240945 GCCGCTGCTGTATTGTTGTT 59.759 50.000 0.00 0.00 33.53 2.83
3316 6206 1.729149 GCCGCTGCTGTATTGTTGTTC 60.729 52.381 0.00 0.00 33.53 3.18
3317 6207 1.806542 CCGCTGCTGTATTGTTGTTCT 59.193 47.619 0.00 0.00 0.00 3.01
3318 6208 2.413239 CCGCTGCTGTATTGTTGTTCTG 60.413 50.000 0.00 0.00 0.00 3.02
3319 6209 2.589014 GCTGCTGTATTGTTGTTCTGC 58.411 47.619 0.00 0.00 0.00 4.26
3320 6210 2.227388 GCTGCTGTATTGTTGTTCTGCT 59.773 45.455 0.00 0.00 0.00 4.24
3321 6211 3.818387 CTGCTGTATTGTTGTTCTGCTG 58.182 45.455 0.00 0.00 0.00 4.41
3322 6212 2.030893 TGCTGTATTGTTGTTCTGCTGC 60.031 45.455 0.00 0.00 0.00 5.25
3323 6213 2.669391 GCTGTATTGTTGTTCTGCTGCC 60.669 50.000 0.00 0.00 0.00 4.85
3324 6214 1.535028 TGTATTGTTGTTCTGCTGCCG 59.465 47.619 0.00 0.00 0.00 5.69
3325 6215 0.521291 TATTGTTGTTCTGCTGCCGC 59.479 50.000 0.00 0.00 0.00 6.53
3326 6216 1.174712 ATTGTTGTTCTGCTGCCGCT 61.175 50.000 0.70 0.00 36.97 5.52
3327 6217 2.062361 TTGTTGTTCTGCTGCCGCTG 62.062 55.000 0.70 0.54 36.97 5.18
3328 6218 3.663176 TTGTTCTGCTGCCGCTGC 61.663 61.111 14.83 14.83 36.97 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.447138 ACTAACAACAGTTCCATGGGAA 57.553 40.909 13.02 1.99 39.66 3.97
94 95 7.872138 TCATACCTGACTTCATTTATTTCCCT 58.128 34.615 0.00 0.00 0.00 4.20
112 114 5.594725 TCTTCGCAGAGTATTTCTCATACCT 59.405 40.000 0.00 0.00 44.98 3.08
113 115 5.688176 GTCTTCGCAGAGTATTTCTCATACC 59.312 44.000 0.00 0.00 44.98 2.73
243 245 2.410262 CGCATATCGTCGGAATTTCTGC 60.410 50.000 0.00 0.00 0.00 4.26
271 273 1.388065 CGCCGAGAACATCTCCTCCT 61.388 60.000 1.98 0.00 40.34 3.69
275 277 1.022735 TAGTCGCCGAGAACATCTCC 58.977 55.000 0.00 0.00 40.34 3.71
280 282 3.970721 TCGTAGTCGCCGAGAACA 58.029 55.556 0.00 0.00 36.96 3.18
302 304 4.990257 TCGGATTTTACGAAGTCACTAGG 58.010 43.478 0.00 0.00 43.93 3.02
326 330 6.435591 TCAAGAGACTGAGCCGATATATCATT 59.564 38.462 13.11 0.00 0.00 2.57
334 338 1.480137 CCTTCAAGAGACTGAGCCGAT 59.520 52.381 0.00 0.00 0.00 4.18
340 344 5.888724 CCTATGAGTACCTTCAAGAGACTGA 59.111 44.000 0.00 0.00 0.00 3.41
349 353 4.140994 CCCTACCTCCTATGAGTACCTTCA 60.141 50.000 0.00 0.00 36.86 3.02
351 355 3.798422 ACCCTACCTCCTATGAGTACCTT 59.202 47.826 0.00 0.00 36.86 3.50
374 378 4.080695 ACCTCTATGAACTCACACATGCAT 60.081 41.667 0.00 0.00 0.00 3.96
378 382 5.946942 ATCACCTCTATGAACTCACACAT 57.053 39.130 0.00 0.00 30.82 3.21
396 400 8.986711 CGCTCATATATACGCGTATATAATCAC 58.013 37.037 40.92 32.03 41.58 3.06
426 430 4.805192 TCTTTGTAAACACGGTACAGACAC 59.195 41.667 0.00 0.00 33.19 3.67
427 431 5.008619 TCTTTGTAAACACGGTACAGACA 57.991 39.130 0.00 0.00 33.19 3.41
436 440 8.313113 TCAATTTACGTTTCTTTGTAAACACG 57.687 30.769 0.00 0.00 41.72 4.49
440 444 9.522804 AAGCATCAATTTACGTTTCTTTGTAAA 57.477 25.926 0.00 0.65 42.71 2.01
452 456 5.288472 GCCAACCTAAAAGCATCAATTTACG 59.712 40.000 0.00 0.00 0.00 3.18
457 461 6.796785 ATAAGCCAACCTAAAAGCATCAAT 57.203 33.333 0.00 0.00 0.00 2.57
458 462 6.603940 AATAAGCCAACCTAAAAGCATCAA 57.396 33.333 0.00 0.00 0.00 2.57
462 466 9.863845 GTAAAATAATAAGCCAACCTAAAAGCA 57.136 29.630 0.00 0.00 0.00 3.91
505 509 3.564225 GTCCATAGCAATTTCCGTTAGGG 59.436 47.826 0.00 0.00 38.33 3.53
549 553 6.256975 ACGCTTGCATTTATACTATGTTCGAA 59.743 34.615 0.00 0.00 0.00 3.71
550 554 5.751509 ACGCTTGCATTTATACTATGTTCGA 59.248 36.000 0.00 0.00 0.00 3.71
551 555 5.974300 ACGCTTGCATTTATACTATGTTCG 58.026 37.500 0.00 0.00 0.00 3.95
552 556 9.878599 ATAAACGCTTGCATTTATACTATGTTC 57.121 29.630 5.09 0.00 30.87 3.18
562 566 7.236674 ACGTATGTATAAACGCTTGCATTTA 57.763 32.000 0.00 0.00 42.74 1.40
564 568 5.555631 CGACGTATGTATAAACGCTTGCATT 60.556 40.000 0.00 0.00 42.74 3.56
566 570 3.241091 CGACGTATGTATAAACGCTTGCA 59.759 43.478 0.00 0.00 42.74 4.08
576 580 9.777843 CGTATATATAAACGCGACGTATGTATA 57.222 33.333 15.93 14.85 39.99 1.47
589 593 7.823692 TGATTGTATGCGCGTATATATAAACG 58.176 34.615 19.79 10.02 41.92 3.60
590 594 9.779237 GATGATTGTATGCGCGTATATATAAAC 57.221 33.333 19.79 9.19 0.00 2.01
591 595 8.974408 GGATGATTGTATGCGCGTATATATAAA 58.026 33.333 19.79 12.20 0.00 1.40
592 596 7.597369 GGGATGATTGTATGCGCGTATATATAA 59.403 37.037 19.79 14.89 0.00 0.98
593 597 7.039993 AGGGATGATTGTATGCGCGTATATATA 60.040 37.037 19.79 8.89 0.00 0.86
594 598 5.926542 GGGATGATTGTATGCGCGTATATAT 59.073 40.000 19.79 15.44 0.00 0.86
595 599 5.068591 AGGGATGATTGTATGCGCGTATATA 59.931 40.000 19.79 14.59 0.00 0.86
596 600 4.119862 GGGATGATTGTATGCGCGTATAT 58.880 43.478 19.79 9.54 0.00 0.86
597 601 3.194755 AGGGATGATTGTATGCGCGTATA 59.805 43.478 13.13 13.13 0.00 1.47
611 615 3.230976 TGTGTACGCTCATAGGGATGAT 58.769 45.455 8.10 0.00 41.33 2.45
615 619 4.202182 GGTATTTGTGTACGCTCATAGGGA 60.202 45.833 8.10 0.00 31.91 4.20
655 661 6.489700 TGATATGCCAACTCAGTCTTTCAAAA 59.510 34.615 0.00 0.00 0.00 2.44
658 664 5.164620 TGATATGCCAACTCAGTCTTTCA 57.835 39.130 0.00 0.00 0.00 2.69
709 715 0.527817 ATTTCCGTCGACGATGAGGC 60.528 55.000 37.65 0.00 43.02 4.70
728 734 1.694150 CACTTTCAGTGGGAGGAGACA 59.306 52.381 0.00 0.00 42.35 3.41
774 782 7.047891 AGTCCTTATGTTCGCATTATTTCTGA 58.952 34.615 0.00 0.00 38.94 3.27
777 785 7.693952 TCAAGTCCTTATGTTCGCATTATTTC 58.306 34.615 0.00 0.00 38.94 2.17
793 801 6.926630 AGTCTCACTAGAATTCAAGTCCTT 57.073 37.500 8.44 0.00 32.16 3.36
808 816 6.614087 AGAGGTGTAGTATCTCTAGTCTCACT 59.386 42.308 0.00 0.00 45.14 3.41
809 817 6.823497 AGAGGTGTAGTATCTCTAGTCTCAC 58.177 44.000 0.00 0.00 45.14 3.51
812 820 7.347748 TGGTTAGAGGTGTAGTATCTCTAGTCT 59.652 40.741 0.00 0.00 46.91 3.24
814 822 7.420446 CCTGGTTAGAGGTGTAGTATCTCTAGT 60.420 44.444 0.00 0.00 46.91 2.57
815 823 6.938030 CCTGGTTAGAGGTGTAGTATCTCTAG 59.062 46.154 0.00 0.00 46.91 2.43
816 824 6.389278 ACCTGGTTAGAGGTGTAGTATCTCTA 59.611 42.308 0.00 0.00 45.14 2.43
817 825 6.297712 AACCTGGTTAGAGGTGTAGTATCTCT 60.298 42.308 11.07 0.00 46.29 3.10
820 828 5.221009 CGAACCTGGTTAGAGGTGTAGTATC 60.221 48.000 12.96 0.00 46.29 2.24
821 829 4.643784 CGAACCTGGTTAGAGGTGTAGTAT 59.356 45.833 12.96 0.00 46.29 2.12
822 830 4.012374 CGAACCTGGTTAGAGGTGTAGTA 58.988 47.826 12.96 0.00 46.29 1.82
823 831 2.824341 CGAACCTGGTTAGAGGTGTAGT 59.176 50.000 12.96 0.00 46.29 2.73
825 833 1.547372 GCGAACCTGGTTAGAGGTGTA 59.453 52.381 21.74 0.00 46.29 2.90
826 834 0.320697 GCGAACCTGGTTAGAGGTGT 59.679 55.000 21.74 0.00 46.29 4.16
827 835 0.736325 CGCGAACCTGGTTAGAGGTG 60.736 60.000 21.74 10.32 46.29 4.00
954 986 8.337532 GCTATTTATAACGTTGGTTTCGGTTAT 58.662 33.333 11.99 0.00 37.58 1.89
956 988 6.372381 AGCTATTTATAACGTTGGTTTCGGTT 59.628 34.615 11.99 0.00 37.58 4.44
1159 1233 4.680708 GCTTCATCGTCCAGGATCAAAGTA 60.681 45.833 0.00 0.00 0.00 2.24
1481 1561 2.192861 CCTCCGCAGCTCGATCTCT 61.193 63.158 7.07 0.00 41.67 3.10
1592 1672 2.993008 TCCTGCATGAGGAGCACC 59.007 61.111 9.14 0.00 46.96 5.01
1970 2056 4.357142 TCGTGTCCTTTATAAGCGACATC 58.643 43.478 15.67 10.59 39.31 3.06
1979 2065 0.748450 CCGCCCTCGTGTCCTTTATA 59.252 55.000 0.00 0.00 0.00 0.98
2208 2294 2.170985 CGAAAAGACGCGCACCTG 59.829 61.111 5.73 0.00 0.00 4.00
2255 2341 1.381872 AGCTATCCCCGTGAGCTGT 60.382 57.895 0.00 0.00 44.77 4.40
2361 2453 9.395707 GTATTCGAGACATCTAAAACGATACAT 57.604 33.333 0.00 0.00 0.00 2.29
2363 2455 8.680261 GTGTATTCGAGACATCTAAAACGATAC 58.320 37.037 5.63 0.00 0.00 2.24
2593 2718 2.373224 CATCTTCCCTGCCTTTCCTTC 58.627 52.381 0.00 0.00 0.00 3.46
2629 2762 5.386924 AGTACGAGTAGATGCTAAAGGGAT 58.613 41.667 0.00 0.00 0.00 3.85
2630 2763 4.789807 AGTACGAGTAGATGCTAAAGGGA 58.210 43.478 0.00 0.00 0.00 4.20
2633 2766 7.695820 ACAACTAGTACGAGTAGATGCTAAAG 58.304 38.462 9.19 0.00 29.91 1.85
2647 2780 5.165676 TGGTTTGCATAGACAACTAGTACG 58.834 41.667 0.00 0.00 31.78 3.67
2649 2782 9.542462 GAATATGGTTTGCATAGACAACTAGTA 57.458 33.333 0.00 0.00 31.78 1.82
2667 4619 9.981460 AAAAGTGAAAATAGAGGAGAATATGGT 57.019 29.630 0.00 0.00 0.00 3.55
2726 4683 7.720515 TGAACAGATTCACATTATGGCATCATA 59.279 33.333 1.65 0.00 40.01 2.15
2855 4812 7.556635 TGCTTGCTATATATGAGGTACGTATCT 59.443 37.037 8.42 8.42 33.39 1.98
2896 4863 7.986889 AGTTGATTGCTTACATCCTTTGTTTTT 59.013 29.630 0.00 0.00 39.87 1.94
2897 4864 7.439056 CAGTTGATTGCTTACATCCTTTGTTTT 59.561 33.333 0.00 0.00 39.87 2.43
2908 4875 7.977789 TTCAGATAACAGTTGATTGCTTACA 57.022 32.000 0.00 0.00 0.00 2.41
2914 4881 8.019669 CCTTCAGTTTCAGATAACAGTTGATTG 58.980 37.037 0.00 0.00 0.00 2.67
2950 4960 0.461693 GATCACTGGAGAGCACCTGC 60.462 60.000 0.00 0.00 42.49 4.85
3136 6026 4.235406 GCAGCATGTAGGATACTCGGCT 62.235 54.545 0.00 0.00 41.51 5.52
3260 6150 1.363744 CAACAGCAGTAGCAGGTAGC 58.636 55.000 0.00 0.00 45.49 3.58
3261 6151 1.363744 GCAACAGCAGTAGCAGGTAG 58.636 55.000 0.00 0.00 45.49 3.18
3262 6152 0.036388 GGCAACAGCAGTAGCAGGTA 60.036 55.000 0.00 0.00 45.49 3.08
3263 6153 1.302832 GGCAACAGCAGTAGCAGGT 60.303 57.895 0.00 0.00 45.49 4.00
3264 6154 1.002868 AGGCAACAGCAGTAGCAGG 60.003 57.895 0.00 0.00 45.49 4.85
3265 6155 0.036577 AGAGGCAACAGCAGTAGCAG 60.037 55.000 0.00 0.00 45.49 4.24
3266 6156 0.397941 AAGAGGCAACAGCAGTAGCA 59.602 50.000 0.00 0.00 45.49 3.49
3267 6157 1.466558 GAAAGAGGCAACAGCAGTAGC 59.533 52.381 0.00 0.00 42.56 3.58
3268 6158 3.051081 AGAAAGAGGCAACAGCAGTAG 57.949 47.619 0.00 0.00 41.41 2.57
3269 6159 3.578716 AGTAGAAAGAGGCAACAGCAGTA 59.421 43.478 0.00 0.00 41.41 2.74
3270 6160 2.370189 AGTAGAAAGAGGCAACAGCAGT 59.630 45.455 0.00 0.00 41.41 4.40
3271 6161 3.051081 AGTAGAAAGAGGCAACAGCAG 57.949 47.619 0.00 0.00 41.41 4.24
3272 6162 3.306780 GGTAGTAGAAAGAGGCAACAGCA 60.307 47.826 0.00 0.00 41.41 4.41
3273 6163 3.055747 AGGTAGTAGAAAGAGGCAACAGC 60.056 47.826 0.00 0.00 41.41 4.40
3274 6164 4.499183 CAGGTAGTAGAAAGAGGCAACAG 58.501 47.826 0.00 0.00 41.41 3.16
3275 6165 3.306780 GCAGGTAGTAGAAAGAGGCAACA 60.307 47.826 0.00 0.00 41.41 3.33
3276 6166 3.263261 GCAGGTAGTAGAAAGAGGCAAC 58.737 50.000 0.00 0.00 0.00 4.17
3277 6167 2.236395 GGCAGGTAGTAGAAAGAGGCAA 59.764 50.000 0.00 0.00 0.00 4.52
3278 6168 1.831736 GGCAGGTAGTAGAAAGAGGCA 59.168 52.381 0.00 0.00 0.00 4.75
3279 6169 1.202428 CGGCAGGTAGTAGAAAGAGGC 60.202 57.143 0.00 0.00 0.00 4.70
3280 6170 1.202428 GCGGCAGGTAGTAGAAAGAGG 60.202 57.143 0.00 0.00 0.00 3.69
3281 6171 1.751924 AGCGGCAGGTAGTAGAAAGAG 59.248 52.381 1.45 0.00 0.00 2.85
3282 6172 1.476891 CAGCGGCAGGTAGTAGAAAGA 59.523 52.381 1.45 0.00 0.00 2.52
3283 6173 1.927895 CAGCGGCAGGTAGTAGAAAG 58.072 55.000 1.45 0.00 0.00 2.62
3284 6174 0.108329 GCAGCGGCAGGTAGTAGAAA 60.108 55.000 3.18 0.00 40.72 2.52
3285 6175 0.970937 AGCAGCGGCAGGTAGTAGAA 60.971 55.000 12.44 0.00 44.61 2.10
3286 6176 1.379977 AGCAGCGGCAGGTAGTAGA 60.380 57.895 12.44 0.00 44.61 2.59
3287 6177 1.227089 CAGCAGCGGCAGGTAGTAG 60.227 63.158 12.44 0.00 44.61 2.57
3288 6178 0.681887 TACAGCAGCGGCAGGTAGTA 60.682 55.000 12.44 3.08 44.61 1.82
3289 6179 1.330655 ATACAGCAGCGGCAGGTAGT 61.331 55.000 12.44 4.04 44.61 2.73
3290 6180 0.179073 AATACAGCAGCGGCAGGTAG 60.179 55.000 12.44 0.00 44.61 3.18
3291 6181 0.461870 CAATACAGCAGCGGCAGGTA 60.462 55.000 12.44 13.22 44.61 3.08
3292 6182 1.746615 CAATACAGCAGCGGCAGGT 60.747 57.895 12.44 11.34 44.61 4.00
3293 6183 1.308069 AACAATACAGCAGCGGCAGG 61.308 55.000 12.44 5.23 44.61 4.85
3294 6184 0.179181 CAACAATACAGCAGCGGCAG 60.179 55.000 12.44 5.49 44.61 4.85
3295 6185 0.888736 ACAACAATACAGCAGCGGCA 60.889 50.000 12.44 0.00 44.61 5.69
3296 6186 0.240945 AACAACAATACAGCAGCGGC 59.759 50.000 0.00 0.00 41.61 6.53
3297 6187 1.806542 AGAACAACAATACAGCAGCGG 59.193 47.619 0.00 0.00 0.00 5.52
3298 6188 2.843077 CAGAACAACAATACAGCAGCG 58.157 47.619 0.00 0.00 0.00 5.18
3299 6189 2.227388 AGCAGAACAACAATACAGCAGC 59.773 45.455 0.00 0.00 0.00 5.25
3300 6190 3.818387 CAGCAGAACAACAATACAGCAG 58.182 45.455 0.00 0.00 0.00 4.24
3301 6191 2.030893 GCAGCAGAACAACAATACAGCA 60.031 45.455 0.00 0.00 0.00 4.41
3302 6192 2.589014 GCAGCAGAACAACAATACAGC 58.411 47.619 0.00 0.00 0.00 4.40
3303 6193 2.413239 CGGCAGCAGAACAACAATACAG 60.413 50.000 0.00 0.00 0.00 2.74
3304 6194 1.535028 CGGCAGCAGAACAACAATACA 59.465 47.619 0.00 0.00 0.00 2.29
3305 6195 1.729149 GCGGCAGCAGAACAACAATAC 60.729 52.381 3.18 0.00 44.35 1.89
3306 6196 0.521291 GCGGCAGCAGAACAACAATA 59.479 50.000 3.18 0.00 44.35 1.90
3307 6197 1.286880 GCGGCAGCAGAACAACAAT 59.713 52.632 3.18 0.00 44.35 2.71
3308 6198 2.721231 GCGGCAGCAGAACAACAA 59.279 55.556 3.18 0.00 44.35 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.