Multiple sequence alignment - TraesCS6A01G351600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G351600 chr6A 100.000 4329 0 0 461 4789 584543137 584547465 0.000000e+00 7995.0
1 TraesCS6A01G351600 chr6A 100.000 214 0 0 1 214 584542677 584542890 3.470000e-106 396.0
2 TraesCS6A01G351600 chr6A 88.953 172 18 1 1764 1934 297678621 297678792 1.350000e-50 211.0
3 TraesCS6A01G351600 chr3A 94.872 975 47 2 3816 4789 459097794 459098766 0.000000e+00 1520.0
4 TraesCS6A01G351600 chr3A 94.523 986 50 4 3808 4789 31967994 31968979 0.000000e+00 1519.0
5 TraesCS6A01G351600 chr3A 94.586 979 52 1 3812 4789 656527492 656528470 0.000000e+00 1513.0
6 TraesCS6A01G351600 chr3A 94.559 974 52 1 3817 4789 265131560 265130587 0.000000e+00 1504.0
7 TraesCS6A01G351600 chr3A 83.984 256 28 5 618 865 739916957 739916707 2.880000e-57 233.0
8 TraesCS6A01G351600 chr3A 83.594 256 28 7 618 865 79450835 79450586 1.340000e-55 228.0
9 TraesCS6A01G351600 chr3A 93.750 48 3 0 2731 2778 588945809 588945762 6.650000e-09 73.1
10 TraesCS6A01G351600 chr2A 94.667 975 50 2 3816 4789 533128856 533127883 0.000000e+00 1511.0
11 TraesCS6A01G351600 chr2A 94.564 975 52 1 3816 4789 561384593 561383619 0.000000e+00 1506.0
12 TraesCS6A01G351600 chr5A 94.748 971 49 2 3817 4786 482629891 482630860 0.000000e+00 1509.0
13 TraesCS6A01G351600 chr5A 94.559 974 51 2 3817 4789 468300736 468299764 0.000000e+00 1504.0
14 TraesCS6A01G351600 chr4A 94.559 974 52 1 3817 4789 503025619 503024646 0.000000e+00 1504.0
15 TraesCS6A01G351600 chr6D 94.055 841 41 7 867 1701 436406709 436407546 0.000000e+00 1267.0
16 TraesCS6A01G351600 chr6D 94.779 747 33 2 2973 3713 436409565 436410311 0.000000e+00 1158.0
17 TraesCS6A01G351600 chr6D 86.348 293 30 8 2685 2969 436409239 436409529 1.290000e-80 311.0
18 TraesCS6A01G351600 chr6D 84.528 265 27 9 609 865 423495429 423495687 2.860000e-62 250.0
19 TraesCS6A01G351600 chr6D 84.706 255 27 4 618 865 410373775 410373526 1.330000e-60 244.0
20 TraesCS6A01G351600 chr6D 88.506 174 18 2 1763 1935 11323222 11323050 4.860000e-50 209.0
21 TraesCS6A01G351600 chr6D 88.506 174 18 2 1760 1932 410169234 410169406 4.860000e-50 209.0
22 TraesCS6A01G351600 chr6B 92.155 854 41 14 867 1701 659612154 659613000 0.000000e+00 1182.0
23 TraesCS6A01G351600 chr6B 95.427 656 29 1 3162 3816 659615788 659616443 0.000000e+00 1044.0
24 TraesCS6A01G351600 chr6B 87.651 332 33 4 2124 2449 659613984 659614313 3.500000e-101 379.0
25 TraesCS6A01G351600 chr6B 93.902 164 5 1 2973 3131 659615621 659615784 4.790000e-60 243.0
26 TraesCS6A01G351600 chr6B 90.000 170 15 2 1764 1932 127938843 127938675 8.070000e-53 219.0
27 TraesCS6A01G351600 chr6B 84.483 174 17 5 1 164 659611835 659612008 3.830000e-36 163.0
28 TraesCS6A01G351600 chr2D 84.496 258 28 3 615 865 558801361 558801613 1.330000e-60 244.0
29 TraesCS6A01G351600 chr2D 88.889 99 10 1 1963 2060 106326815 106326913 2.340000e-23 121.0
30 TraesCS6A01G351600 chr5D 84.646 254 27 3 619 865 279293125 279292877 4.790000e-60 243.0
31 TraesCS6A01G351600 chr5D 89.412 170 16 2 1764 1932 12718948 12719116 3.750000e-51 213.0
32 TraesCS6A01G351600 chr1A 85.306 245 24 3 623 860 451735724 451735963 4.790000e-60 243.0
33 TraesCS6A01G351600 chr1D 83.846 260 30 8 615 867 487974576 487974322 2.230000e-58 237.0
34 TraesCS6A01G351600 chr1D 87.671 73 5 3 1991 2061 428611425 428611495 1.100000e-11 82.4
35 TraesCS6A01G351600 chr1B 83.922 255 26 10 619 865 593670177 593669930 3.730000e-56 230.0
36 TraesCS6A01G351600 chr1B 100.000 29 0 0 2034 2062 623695913 623695941 2.000000e-03 54.7
37 TraesCS6A01G351600 chr3D 89.941 169 16 1 1769 1936 217587724 217587556 2.900000e-52 217.0
38 TraesCS6A01G351600 chr2B 89.941 169 15 2 1765 1932 148699081 148699248 2.900000e-52 217.0
39 TraesCS6A01G351600 chr2B 89.017 173 17 2 1769 1940 741379623 741379452 3.750000e-51 213.0
40 TraesCS6A01G351600 chr2B 89.286 168 17 1 1769 1935 461737377 461737544 4.860000e-50 209.0
41 TraesCS6A01G351600 chr2B 88.889 99 10 1 1963 2060 154991089 154991187 2.340000e-23 121.0
42 TraesCS6A01G351600 chr2B 81.481 108 13 7 1959 2061 51645324 51645219 1.100000e-11 82.4
43 TraesCS6A01G351600 chr2B 78.788 99 16 3 2712 2806 647693621 647693524 1.440000e-05 62.1
44 TraesCS6A01G351600 chr7B 95.122 41 2 0 1242 1282 304523898 304523938 1.110000e-06 65.8
45 TraesCS6A01G351600 chr7D 97.143 35 1 0 1248 1282 309913824 309913790 5.180000e-05 60.2
46 TraesCS6A01G351600 chr7A 92.683 41 3 0 1242 1282 349686197 349686157 5.180000e-05 60.2
47 TraesCS6A01G351600 chr4B 100.000 28 0 0 2034 2061 144743776 144743749 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G351600 chr6A 584542677 584547465 4788 False 4195.5 7995 100.000000 1 4789 2 chr6A.!!$F2 4788
1 TraesCS6A01G351600 chr3A 459097794 459098766 972 False 1520.0 1520 94.872000 3816 4789 1 chr3A.!!$F2 973
2 TraesCS6A01G351600 chr3A 31967994 31968979 985 False 1519.0 1519 94.523000 3808 4789 1 chr3A.!!$F1 981
3 TraesCS6A01G351600 chr3A 656527492 656528470 978 False 1513.0 1513 94.586000 3812 4789 1 chr3A.!!$F3 977
4 TraesCS6A01G351600 chr3A 265130587 265131560 973 True 1504.0 1504 94.559000 3817 4789 1 chr3A.!!$R2 972
5 TraesCS6A01G351600 chr2A 533127883 533128856 973 True 1511.0 1511 94.667000 3816 4789 1 chr2A.!!$R1 973
6 TraesCS6A01G351600 chr2A 561383619 561384593 974 True 1506.0 1506 94.564000 3816 4789 1 chr2A.!!$R2 973
7 TraesCS6A01G351600 chr5A 482629891 482630860 969 False 1509.0 1509 94.748000 3817 4786 1 chr5A.!!$F1 969
8 TraesCS6A01G351600 chr5A 468299764 468300736 972 True 1504.0 1504 94.559000 3817 4789 1 chr5A.!!$R1 972
9 TraesCS6A01G351600 chr4A 503024646 503025619 973 True 1504.0 1504 94.559000 3817 4789 1 chr4A.!!$R1 972
10 TraesCS6A01G351600 chr6D 436406709 436410311 3602 False 912.0 1267 91.727333 867 3713 3 chr6D.!!$F3 2846
11 TraesCS6A01G351600 chr6B 659611835 659616443 4608 False 602.2 1182 90.723600 1 3816 5 chr6B.!!$F1 3815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 152 0.254178 ACAGAGGCTGCCACCATTAG 59.746 55.0 22.65 5.65 34.37 1.73 F
1607 1646 0.456482 TCATTTTCAATGGCGCTGCG 60.456 50.0 19.17 19.17 0.00 5.18 F
2885 5216 0.249120 CCCATGCCAAGTCTACGACA 59.751 55.0 0.00 0.00 34.60 4.35 F
3142 5513 0.533755 AGGCGTCTTCCATGCTATGC 60.534 55.0 0.00 0.00 37.18 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2045 2671 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.0 0.0 0.0 0.0 3.62 R
3346 5718 0.039180 TGCCCTCCTCTTGACGACTA 59.961 55.0 0.0 0.0 0.0 2.59 R
3744 6117 0.036732 TTGTCCTCATCACCACAGCC 59.963 55.0 0.0 0.0 0.0 4.85 R
4552 6930 0.768221 GCTGGGGGAGGATGGTATGA 60.768 60.0 0.0 0.0 0.0 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 74 5.482006 CCATGTTTGACACTAGATCTGACA 58.518 41.667 5.18 3.94 0.00 3.58
75 80 2.432510 GACACTAGATCTGACAAGGGGG 59.567 54.545 5.18 0.00 0.00 5.40
83 88 1.530013 CTGACAAGGGGGCTTGCTTG 61.530 60.000 0.00 0.00 37.83 4.01
93 98 1.180029 GGCTTGCTTGTCATGGTGAT 58.820 50.000 0.00 0.00 0.00 3.06
108 113 1.064017 GGTGATGTGGCAGGGGATAAA 60.064 52.381 0.00 0.00 0.00 1.40
113 118 3.182887 TGTGGCAGGGGATAAATTTGT 57.817 42.857 0.00 0.00 0.00 2.83
134 145 2.595463 GTGCAACAGAGGCTGCCA 60.595 61.111 22.65 0.00 37.79 4.92
140 151 0.698238 AACAGAGGCTGCCACCATTA 59.302 50.000 22.65 0.00 34.37 1.90
141 152 0.254178 ACAGAGGCTGCCACCATTAG 59.746 55.000 22.65 5.65 34.37 1.73
153 164 3.688414 GCCACCATTAGTTATGCCTTCCT 60.688 47.826 0.00 0.00 32.60 3.36
159 170 6.126361 ACCATTAGTTATGCCTTCCTCATCTT 60.126 38.462 0.00 0.00 32.60 2.40
164 175 1.852633 TGCCTTCCTCATCTTCGAGA 58.147 50.000 0.00 0.00 34.79 4.04
165 176 2.179427 TGCCTTCCTCATCTTCGAGAA 58.821 47.619 0.00 0.00 34.79 2.87
167 178 2.740256 GCCTTCCTCATCTTCGAGAACC 60.740 54.545 0.00 0.00 34.79 3.62
168 179 2.159028 CCTTCCTCATCTTCGAGAACCC 60.159 54.545 0.00 0.00 34.79 4.11
169 180 1.486211 TCCTCATCTTCGAGAACCCC 58.514 55.000 0.00 0.00 34.79 4.95
170 181 1.007238 TCCTCATCTTCGAGAACCCCT 59.993 52.381 0.00 0.00 34.79 4.79
171 182 1.410882 CCTCATCTTCGAGAACCCCTC 59.589 57.143 0.00 0.00 38.55 4.30
172 183 2.383855 CTCATCTTCGAGAACCCCTCT 58.616 52.381 0.00 0.00 39.78 3.69
173 184 2.360801 CTCATCTTCGAGAACCCCTCTC 59.639 54.545 0.00 0.00 46.35 3.20
178 189 2.896443 GAGAACCCCTCTCGCCAG 59.104 66.667 0.00 0.00 41.34 4.85
179 190 3.378399 GAGAACCCCTCTCGCCAGC 62.378 68.421 0.00 0.00 41.34 4.85
180 191 4.475135 GAACCCCTCTCGCCAGCC 62.475 72.222 0.00 0.00 0.00 4.85
193 204 4.767255 CAGCCGGAGCACCTGGAC 62.767 72.222 5.05 6.39 43.56 4.02
514 525 2.409064 TCCAAGGAGGAACAGGTACA 57.591 50.000 0.00 0.00 45.65 2.90
523 534 5.726793 AGGAGGAACAGGTACATGTTATCTT 59.273 40.000 24.47 18.12 43.32 2.40
525 536 7.402071 AGGAGGAACAGGTACATGTTATCTTTA 59.598 37.037 24.47 0.00 43.32 1.85
554 565 4.402056 TTGGTTATAGCTGCTCTACCAC 57.598 45.455 22.32 8.49 0.00 4.16
559 570 5.880887 GGTTATAGCTGCTCTACCACTTTTT 59.119 40.000 4.91 0.00 0.00 1.94
576 587 3.435105 TTTTACAGTGTGCAAAGGCTG 57.565 42.857 5.88 0.00 41.91 4.85
584 599 1.010419 GTGCAAAGGCTGATTTGGCG 61.010 55.000 10.23 0.00 39.94 5.69
585 600 1.446618 GCAAAGGCTGATTTGGCGG 60.447 57.895 10.23 0.00 39.94 6.13
586 601 1.216178 CAAAGGCTGATTTGGCGGG 59.784 57.895 0.00 0.00 36.68 6.13
619 634 7.334844 CTTGACTTTTAACAAGTTCCTTCCT 57.665 36.000 0.00 0.00 38.72 3.36
620 635 6.937436 TGACTTTTAACAAGTTCCTTCCTC 57.063 37.500 5.06 0.00 0.00 3.71
621 636 6.659824 TGACTTTTAACAAGTTCCTTCCTCT 58.340 36.000 5.06 0.00 0.00 3.69
622 637 6.542370 TGACTTTTAACAAGTTCCTTCCTCTG 59.458 38.462 5.06 0.00 0.00 3.35
623 638 6.424032 ACTTTTAACAAGTTCCTTCCTCTGT 58.576 36.000 0.00 0.00 0.00 3.41
624 639 6.890268 ACTTTTAACAAGTTCCTTCCTCTGTT 59.110 34.615 0.00 0.00 0.00 3.16
625 640 7.396339 ACTTTTAACAAGTTCCTTCCTCTGTTT 59.604 33.333 0.00 0.00 0.00 2.83
626 641 7.712204 TTTAACAAGTTCCTTCCTCTGTTTT 57.288 32.000 0.00 0.00 0.00 2.43
627 642 7.712204 TTAACAAGTTCCTTCCTCTGTTTTT 57.288 32.000 0.00 0.00 0.00 1.94
628 643 8.810990 TTAACAAGTTCCTTCCTCTGTTTTTA 57.189 30.769 0.00 0.00 0.00 1.52
629 644 7.898014 AACAAGTTCCTTCCTCTGTTTTTAT 57.102 32.000 0.00 0.00 0.00 1.40
630 645 7.898014 ACAAGTTCCTTCCTCTGTTTTTATT 57.102 32.000 0.00 0.00 0.00 1.40
631 646 8.306313 ACAAGTTCCTTCCTCTGTTTTTATTT 57.694 30.769 0.00 0.00 0.00 1.40
632 647 9.416284 ACAAGTTCCTTCCTCTGTTTTTATTTA 57.584 29.630 0.00 0.00 0.00 1.40
633 648 9.678941 CAAGTTCCTTCCTCTGTTTTTATTTAC 57.321 33.333 0.00 0.00 0.00 2.01
634 649 9.642343 AAGTTCCTTCCTCTGTTTTTATTTACT 57.358 29.630 0.00 0.00 0.00 2.24
635 650 9.286170 AGTTCCTTCCTCTGTTTTTATTTACTC 57.714 33.333 0.00 0.00 0.00 2.59
636 651 9.286170 GTTCCTTCCTCTGTTTTTATTTACTCT 57.714 33.333 0.00 0.00 0.00 3.24
637 652 8.848474 TCCTTCCTCTGTTTTTATTTACTCTG 57.152 34.615 0.00 0.00 0.00 3.35
638 653 8.437575 TCCTTCCTCTGTTTTTATTTACTCTGT 58.562 33.333 0.00 0.00 0.00 3.41
639 654 9.720769 CCTTCCTCTGTTTTTATTTACTCTGTA 57.279 33.333 0.00 0.00 0.00 2.74
678 693 7.980742 GAAGTCAAACTTCGTAAAATTTGGT 57.019 32.000 4.24 0.00 44.22 3.67
679 694 7.980742 AAGTCAAACTTCGTAAAATTTGGTC 57.019 32.000 0.00 0.00 31.77 4.02
680 695 7.090953 AGTCAAACTTCGTAAAATTTGGTCA 57.909 32.000 0.00 0.00 33.72 4.02
681 696 7.540299 AGTCAAACTTCGTAAAATTTGGTCAA 58.460 30.769 0.00 0.00 33.72 3.18
682 697 7.700656 AGTCAAACTTCGTAAAATTTGGTCAAG 59.299 33.333 0.00 0.00 33.72 3.02
683 698 7.486870 GTCAAACTTCGTAAAATTTGGTCAAGT 59.513 33.333 0.00 0.00 33.72 3.16
684 699 8.030106 TCAAACTTCGTAAAATTTGGTCAAGTT 58.970 29.630 10.56 10.56 34.97 2.66
685 700 8.652463 CAAACTTCGTAAAATTTGGTCAAGTTT 58.348 29.630 17.39 17.39 41.32 2.66
686 701 9.857957 AAACTTCGTAAAATTTGGTCAAGTTTA 57.142 25.926 19.64 2.50 39.73 2.01
729 744 9.734620 CATTTACCATAACAAATCTACATGGTG 57.265 33.333 13.44 0.00 46.74 4.17
730 745 8.871629 TTTACCATAACAAATCTACATGGTGT 57.128 30.769 13.44 0.00 46.74 4.16
731 746 6.757897 ACCATAACAAATCTACATGGTGTG 57.242 37.500 3.84 0.00 45.86 3.82
732 747 6.480763 ACCATAACAAATCTACATGGTGTGA 58.519 36.000 3.84 0.00 45.86 3.58
733 748 7.118723 ACCATAACAAATCTACATGGTGTGAT 58.881 34.615 3.84 0.00 45.86 3.06
734 749 7.067372 ACCATAACAAATCTACATGGTGTGATG 59.933 37.037 3.84 0.80 45.86 3.07
735 750 7.067372 CCATAACAAATCTACATGGTGTGATGT 59.933 37.037 0.00 0.00 39.87 3.06
736 751 9.108284 CATAACAAATCTACATGGTGTGATGTA 57.892 33.333 0.00 0.00 37.70 2.29
737 752 7.994425 AACAAATCTACATGGTGTGATGTAA 57.006 32.000 0.00 0.00 38.15 2.41
738 753 7.994425 ACAAATCTACATGGTGTGATGTAAA 57.006 32.000 0.00 0.00 38.15 2.01
739 754 8.402798 ACAAATCTACATGGTGTGATGTAAAA 57.597 30.769 0.00 0.00 38.15 1.52
740 755 8.514594 ACAAATCTACATGGTGTGATGTAAAAG 58.485 33.333 0.00 0.00 38.15 2.27
741 756 8.514594 CAAATCTACATGGTGTGATGTAAAAGT 58.485 33.333 0.00 0.00 38.15 2.66
742 757 7.615582 ATCTACATGGTGTGATGTAAAAGTG 57.384 36.000 0.00 0.00 38.15 3.16
743 758 4.503741 ACATGGTGTGATGTAAAAGTGC 57.496 40.909 0.00 0.00 34.69 4.40
744 759 3.888323 ACATGGTGTGATGTAAAAGTGCA 59.112 39.130 0.00 0.00 34.69 4.57
745 760 4.523943 ACATGGTGTGATGTAAAAGTGCAT 59.476 37.500 0.00 0.00 34.69 3.96
746 761 5.010922 ACATGGTGTGATGTAAAAGTGCATT 59.989 36.000 0.00 0.00 34.69 3.56
747 762 5.119931 TGGTGTGATGTAAAAGTGCATTC 57.880 39.130 0.00 0.00 29.11 2.67
748 763 4.582240 TGGTGTGATGTAAAAGTGCATTCA 59.418 37.500 0.00 0.00 29.11 2.57
749 764 5.068329 TGGTGTGATGTAAAAGTGCATTCAA 59.932 36.000 0.00 0.00 29.11 2.69
750 765 6.158598 GGTGTGATGTAAAAGTGCATTCAAT 58.841 36.000 0.00 0.00 29.11 2.57
751 766 7.040132 TGGTGTGATGTAAAAGTGCATTCAATA 60.040 33.333 0.00 0.00 29.11 1.90
752 767 7.812191 GGTGTGATGTAAAAGTGCATTCAATAA 59.188 33.333 0.00 0.00 29.11 1.40
753 768 9.357652 GTGTGATGTAAAAGTGCATTCAATAAT 57.642 29.630 0.00 0.00 29.11 1.28
832 847 9.631639 CAAAATTTTCAACGATTAACTTTGACC 57.368 29.630 0.00 0.00 36.69 4.02
833 848 8.934507 AAATTTTCAACGATTAACTTTGACCA 57.065 26.923 0.00 0.00 36.69 4.02
834 849 8.934507 AATTTTCAACGATTAACTTTGACCAA 57.065 26.923 0.00 0.00 36.69 3.67
835 850 8.934507 ATTTTCAACGATTAACTTTGACCAAA 57.065 26.923 0.00 0.00 36.69 3.28
836 851 8.758633 TTTTCAACGATTAACTTTGACCAAAA 57.241 26.923 0.00 0.00 36.69 2.44
837 852 7.743520 TTCAACGATTAACTTTGACCAAAAC 57.256 32.000 0.00 0.00 36.69 2.43
838 853 7.090953 TCAACGATTAACTTTGACCAAAACT 57.909 32.000 0.00 0.00 33.02 2.66
839 854 8.211116 TCAACGATTAACTTTGACCAAAACTA 57.789 30.769 0.00 0.00 33.02 2.24
840 855 8.675504 TCAACGATTAACTTTGACCAAAACTAA 58.324 29.630 0.00 0.00 33.02 2.24
841 856 9.458374 CAACGATTAACTTTGACCAAAACTAAT 57.542 29.630 0.00 3.49 30.73 1.73
846 861 9.887406 ATTAACTTTGACCAAAACTAATACACG 57.113 29.630 0.00 0.00 0.00 4.49
847 862 6.308371 ACTTTGACCAAAACTAATACACGG 57.692 37.500 0.00 0.00 0.00 4.94
848 863 6.056884 ACTTTGACCAAAACTAATACACGGA 58.943 36.000 0.00 0.00 0.00 4.69
849 864 5.927954 TTGACCAAAACTAATACACGGAC 57.072 39.130 0.00 0.00 0.00 4.79
850 865 5.217978 TGACCAAAACTAATACACGGACT 57.782 39.130 0.00 0.00 0.00 3.85
851 866 6.343716 TGACCAAAACTAATACACGGACTA 57.656 37.500 0.00 0.00 0.00 2.59
852 867 6.757237 TGACCAAAACTAATACACGGACTAA 58.243 36.000 0.00 0.00 0.00 2.24
853 868 7.215789 TGACCAAAACTAATACACGGACTAAA 58.784 34.615 0.00 0.00 0.00 1.85
854 869 7.879160 TGACCAAAACTAATACACGGACTAAAT 59.121 33.333 0.00 0.00 0.00 1.40
855 870 9.369904 GACCAAAACTAATACACGGACTAAATA 57.630 33.333 0.00 0.00 0.00 1.40
856 871 9.723601 ACCAAAACTAATACACGGACTAAATAA 57.276 29.630 0.00 0.00 0.00 1.40
865 880 9.675464 AATACACGGACTAAATAAAAATGGAGA 57.325 29.630 0.00 0.00 0.00 3.71
868 883 7.333672 ACACGGACTAAATAAAAATGGAGAGTC 59.666 37.037 0.00 0.00 33.00 3.36
892 907 2.310779 TCCTTGTGGAGCACTAGTCT 57.689 50.000 0.00 0.00 35.95 3.24
972 987 2.880629 TAGTCTCCCTGCCCTGCCTC 62.881 65.000 0.00 0.00 0.00 4.70
1019 1034 5.595993 CCGTCGCGTGATATATTTACTTTG 58.404 41.667 5.77 0.00 0.00 2.77
1020 1035 5.400188 CCGTCGCGTGATATATTTACTTTGA 59.600 40.000 5.77 0.00 0.00 2.69
1022 1037 7.358931 CCGTCGCGTGATATATTTACTTTGAAT 60.359 37.037 5.77 0.00 0.00 2.57
1050 1070 7.615582 TTGCCTGAAGAAAATACACAGATAG 57.384 36.000 0.00 0.00 0.00 2.08
1067 1087 1.760192 TAGTGGCTCCTAGTTCCGTC 58.240 55.000 0.00 0.00 0.00 4.79
1193 1213 1.377202 TCCGGCATGGAGTTTGAGC 60.377 57.895 0.00 0.00 43.74 4.26
1209 1229 0.530870 GAGCCCAAGATCACGCCTAC 60.531 60.000 0.00 0.00 0.00 3.18
1342 1381 7.500227 AGACCATGGTGTATCTAACAAATCATG 59.500 37.037 25.52 0.00 40.63 3.07
1343 1382 7.118723 ACCATGGTGTATCTAACAAATCATGT 58.881 34.615 18.99 0.00 46.82 3.21
1344 1383 7.067372 ACCATGGTGTATCTAACAAATCATGTG 59.933 37.037 18.99 0.00 42.99 3.21
1345 1384 7.067372 CCATGGTGTATCTAACAAATCATGTGT 59.933 37.037 2.57 0.00 42.99 3.72
1346 1385 9.108284 CATGGTGTATCTAACAAATCATGTGTA 57.892 33.333 0.00 0.00 42.99 2.90
1454 1493 3.444916 CAACTACTGCCGATACGACAAT 58.555 45.455 0.00 0.00 0.00 2.71
1582 1621 2.576847 CGGCGCCTTTTTCATCGC 60.577 61.111 26.68 0.00 45.99 4.58
1607 1646 0.456482 TCATTTTCAATGGCGCTGCG 60.456 50.000 19.17 19.17 0.00 5.18
1655 1694 3.984193 GATCCTGCTTGGCTGCGGT 62.984 63.158 10.08 0.00 37.61 5.68
1692 1731 0.685660 GGTCAGAAAGTTCCCGGACT 59.314 55.000 0.73 0.00 0.00 3.85
1701 1740 6.151144 CAGAAAGTTCCCGGACTTCAAATTAT 59.849 38.462 0.73 0.00 38.86 1.28
1702 1741 7.335924 CAGAAAGTTCCCGGACTTCAAATTATA 59.664 37.037 0.73 0.00 38.86 0.98
1703 1742 8.053355 AGAAAGTTCCCGGACTTCAAATTATAT 58.947 33.333 0.73 0.00 38.86 0.86
1704 1743 7.568199 AAGTTCCCGGACTTCAAATTATATG 57.432 36.000 0.73 0.00 34.94 1.78
1706 1745 7.116736 AGTTCCCGGACTTCAAATTATATGTT 58.883 34.615 0.73 0.00 0.00 2.71
1707 1746 8.269317 AGTTCCCGGACTTCAAATTATATGTTA 58.731 33.333 0.73 0.00 0.00 2.41
1708 1747 9.063615 GTTCCCGGACTTCAAATTATATGTTAT 57.936 33.333 0.73 0.00 0.00 1.89
1709 1748 8.615878 TCCCGGACTTCAAATTATATGTTATG 57.384 34.615 0.73 0.00 0.00 1.90
1710 1749 7.174253 TCCCGGACTTCAAATTATATGTTATGC 59.826 37.037 0.73 0.00 0.00 3.14
1711 1750 7.040755 CCCGGACTTCAAATTATATGTTATGCA 60.041 37.037 0.73 0.00 0.00 3.96
1712 1751 8.017373 CCGGACTTCAAATTATATGTTATGCAG 58.983 37.037 0.00 0.00 0.00 4.41
1713 1752 7.535258 CGGACTTCAAATTATATGTTATGCAGC 59.465 37.037 0.00 0.00 0.00 5.25
1714 1753 8.571336 GGACTTCAAATTATATGTTATGCAGCT 58.429 33.333 0.00 0.00 0.00 4.24
1715 1754 9.604626 GACTTCAAATTATATGTTATGCAGCTC 57.395 33.333 0.00 0.00 0.00 4.09
1717 1756 7.452880 TCAAATTATATGTTATGCAGCTCCC 57.547 36.000 0.00 0.00 0.00 4.30
1727 1949 2.307934 TGCAGCTCCCAAACAAAAAC 57.692 45.000 0.00 0.00 0.00 2.43
1748 1970 6.759497 AACTAAAATGCAAGTGGTCTATCC 57.241 37.500 0.00 0.00 0.00 2.59
1797 2423 9.807921 TCCCTCTGTTTCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
1830 2456 9.832445 ATTTCAAATGAACTACTACATACGGAT 57.168 29.630 0.00 0.00 33.13 4.18
1883 2509 9.944663 TTCACTCATTTTGTTTTGTATGTACTC 57.055 29.630 0.00 0.00 0.00 2.59
1884 2510 9.114952 TCACTCATTTTGTTTTGTATGTACTCA 57.885 29.630 0.00 0.00 0.00 3.41
1885 2511 9.897744 CACTCATTTTGTTTTGTATGTACTCAT 57.102 29.630 0.00 0.00 38.00 2.90
1945 2571 7.001674 ACAGAGGGAGTAGAAGTATATGACAG 58.998 42.308 0.00 0.00 0.00 3.51
1957 2583 9.427821 AGAAGTATATGACAGGTTAATCAGACT 57.572 33.333 0.00 0.00 0.00 3.24
1958 2584 9.685828 GAAGTATATGACAGGTTAATCAGACTC 57.314 37.037 0.00 0.00 0.00 3.36
1959 2585 9.427821 AAGTATATGACAGGTTAATCAGACTCT 57.572 33.333 0.00 0.00 0.00 3.24
1960 2586 9.073475 AGTATATGACAGGTTAATCAGACTCTC 57.927 37.037 0.00 0.00 0.00 3.20
1961 2587 5.606348 ATGACAGGTTAATCAGACTCTCC 57.394 43.478 0.00 0.00 0.00 3.71
1962 2588 3.769844 TGACAGGTTAATCAGACTCTCCC 59.230 47.826 0.00 0.00 0.00 4.30
1963 2589 3.108376 ACAGGTTAATCAGACTCTCCCC 58.892 50.000 0.00 0.00 0.00 4.81
1966 2592 3.970640 AGGTTAATCAGACTCTCCCCATC 59.029 47.826 0.00 0.00 0.00 3.51
1967 2593 3.071747 GGTTAATCAGACTCTCCCCATCC 59.928 52.174 0.00 0.00 0.00 3.51
1968 2594 1.813102 AATCAGACTCTCCCCATCCC 58.187 55.000 0.00 0.00 0.00 3.85
1969 2595 0.644380 ATCAGACTCTCCCCATCCCA 59.356 55.000 0.00 0.00 0.00 4.37
1970 2596 0.644380 TCAGACTCTCCCCATCCCAT 59.356 55.000 0.00 0.00 0.00 4.00
1971 2597 1.866269 TCAGACTCTCCCCATCCCATA 59.134 52.381 0.00 0.00 0.00 2.74
1972 2598 2.456340 TCAGACTCTCCCCATCCCATAT 59.544 50.000 0.00 0.00 0.00 1.78
1973 2599 3.116199 TCAGACTCTCCCCATCCCATATT 60.116 47.826 0.00 0.00 0.00 1.28
1974 2600 4.109600 TCAGACTCTCCCCATCCCATATTA 59.890 45.833 0.00 0.00 0.00 0.98
1975 2601 4.846367 CAGACTCTCCCCATCCCATATTAA 59.154 45.833 0.00 0.00 0.00 1.40
1976 2602 5.490357 CAGACTCTCCCCATCCCATATTAAT 59.510 44.000 0.00 0.00 0.00 1.40
1977 2603 6.012157 CAGACTCTCCCCATCCCATATTAATT 60.012 42.308 0.00 0.00 0.00 1.40
1978 2604 6.012157 AGACTCTCCCCATCCCATATTAATTG 60.012 42.308 0.00 0.00 0.00 2.32
1979 2605 5.616986 ACTCTCCCCATCCCATATTAATTGT 59.383 40.000 0.00 0.00 0.00 2.71
1980 2606 6.139679 TCTCCCCATCCCATATTAATTGTC 57.860 41.667 0.00 0.00 0.00 3.18
1981 2607 5.015178 TCTCCCCATCCCATATTAATTGTCC 59.985 44.000 0.00 0.00 0.00 4.02
1982 2608 4.925734 TCCCCATCCCATATTAATTGTCCT 59.074 41.667 0.00 0.00 0.00 3.85
1983 2609 5.018809 CCCCATCCCATATTAATTGTCCTG 58.981 45.833 0.00 0.00 0.00 3.86
1984 2610 5.222316 CCCCATCCCATATTAATTGTCCTGA 60.222 44.000 0.00 0.00 0.00 3.86
1985 2611 6.314120 CCCATCCCATATTAATTGTCCTGAA 58.686 40.000 0.00 0.00 0.00 3.02
1986 2612 6.782000 CCCATCCCATATTAATTGTCCTGAAA 59.218 38.462 0.00 0.00 0.00 2.69
1987 2613 7.255942 CCCATCCCATATTAATTGTCCTGAAAC 60.256 40.741 0.00 0.00 0.00 2.78
1988 2614 7.287466 CCATCCCATATTAATTGTCCTGAAACA 59.713 37.037 0.00 0.00 0.00 2.83
1989 2615 8.694540 CATCCCATATTAATTGTCCTGAAACAA 58.305 33.333 0.00 0.00 42.92 2.83
1990 2616 8.657387 TCCCATATTAATTGTCCTGAAACAAA 57.343 30.769 0.00 0.00 42.10 2.83
1991 2617 9.265862 TCCCATATTAATTGTCCTGAAACAAAT 57.734 29.630 0.00 0.00 42.10 2.32
1992 2618 9.316730 CCCATATTAATTGTCCTGAAACAAATG 57.683 33.333 0.00 0.00 42.10 2.32
1993 2619 9.874205 CCATATTAATTGTCCTGAAACAAATGT 57.126 29.630 0.00 0.00 42.10 2.71
2000 2626 9.739276 AATTGTCCTGAAACAAATGTATCTAGA 57.261 29.630 0.00 0.00 42.10 2.43
2001 2627 8.547967 TTGTCCTGAAACAAATGTATCTAGAC 57.452 34.615 0.00 0.00 36.25 2.59
2002 2628 6.811665 TGTCCTGAAACAAATGTATCTAGACG 59.188 38.462 0.00 0.00 0.00 4.18
2003 2629 6.812160 GTCCTGAAACAAATGTATCTAGACGT 59.188 38.462 0.00 0.00 0.00 4.34
2004 2630 7.972277 GTCCTGAAACAAATGTATCTAGACGTA 59.028 37.037 0.00 0.00 0.00 3.57
2005 2631 8.692710 TCCTGAAACAAATGTATCTAGACGTAT 58.307 33.333 0.00 0.00 0.00 3.06
2006 2632 9.314321 CCTGAAACAAATGTATCTAGACGTATT 57.686 33.333 0.00 0.00 0.00 1.89
2009 2635 9.831054 GAAACAAATGTATCTAGACGTATTTCG 57.169 33.333 0.00 1.35 46.00 3.46
2010 2636 9.577110 AAACAAATGTATCTAGACGTATTTCGA 57.423 29.630 0.00 0.00 42.86 3.71
2011 2637 9.745880 AACAAATGTATCTAGACGTATTTCGAT 57.254 29.630 0.00 0.00 42.86 3.59
2012 2638 9.181805 ACAAATGTATCTAGACGTATTTCGATG 57.818 33.333 0.00 0.00 42.86 3.84
2013 2639 9.181805 CAAATGTATCTAGACGTATTTCGATGT 57.818 33.333 0.00 0.00 42.86 3.06
2014 2640 9.745880 AAATGTATCTAGACGTATTTCGATGTT 57.254 29.630 0.00 0.00 42.86 2.71
2017 2643 9.264719 TGTATCTAGACGTATTTCGATGTTAGA 57.735 33.333 0.00 0.00 42.86 2.10
2021 2647 9.264719 TCTAGACGTATTTCGATGTTAGATACA 57.735 33.333 0.00 0.00 42.86 2.29
2071 2697 4.080526 ACGGAGGGAGTACATGCTAAAATT 60.081 41.667 0.00 0.00 0.00 1.82
2075 2701 7.054751 GGAGGGAGTACATGCTAAAATTACTT 58.945 38.462 0.00 0.00 0.00 2.24
2076 2702 7.226918 GGAGGGAGTACATGCTAAAATTACTTC 59.773 40.741 0.00 0.00 0.00 3.01
2077 2703 7.862675 AGGGAGTACATGCTAAAATTACTTCT 58.137 34.615 0.00 0.00 0.00 2.85
2078 2704 7.988028 AGGGAGTACATGCTAAAATTACTTCTC 59.012 37.037 0.00 0.00 0.00 2.87
2079 2705 7.769044 GGGAGTACATGCTAAAATTACTTCTCA 59.231 37.037 0.00 0.00 0.00 3.27
2118 2758 9.563748 TTTCGACCCCATAAATTAAAGTATAGG 57.436 33.333 0.00 0.00 0.00 2.57
2119 2759 8.495160 TCGACCCCATAAATTAAAGTATAGGA 57.505 34.615 0.00 0.00 0.00 2.94
2169 3625 8.702163 ATTGTTTTCTTTTTGTTCTTGACGAT 57.298 26.923 0.00 0.00 0.00 3.73
2188 3649 3.738282 CGATGAAGCTAGCCTCAATACAC 59.262 47.826 19.53 8.41 0.00 2.90
2189 3650 4.697514 GATGAAGCTAGCCTCAATACACA 58.302 43.478 19.53 3.94 0.00 3.72
2199 3660 5.371526 AGCCTCAATACACATACTCCATTG 58.628 41.667 0.00 0.00 0.00 2.82
2202 3663 5.163205 CCTCAATACACATACTCCATTGGGA 60.163 44.000 2.09 0.00 42.29 4.37
2205 3666 7.353525 TCAATACACATACTCCATTGGGATTT 58.646 34.615 2.09 0.00 43.91 2.17
2206 3667 8.498575 TCAATACACATACTCCATTGGGATTTA 58.501 33.333 2.09 0.00 43.91 1.40
2207 3668 9.300681 CAATACACATACTCCATTGGGATTTAT 57.699 33.333 2.09 0.00 43.91 1.40
2318 3780 3.954904 TCGGATCCAAAACAACTTTCCAA 59.045 39.130 13.41 0.00 0.00 3.53
2323 3785 6.018016 GGATCCAAAACAACTTTCCAATTGTG 60.018 38.462 6.95 0.00 39.00 3.33
2330 3792 8.474006 AAACAACTTTCCAATTGTGTTACTTC 57.526 30.769 9.47 0.00 39.00 3.01
2332 3794 7.480810 ACAACTTTCCAATTGTGTTACTTCTC 58.519 34.615 4.43 0.00 37.64 2.87
2333 3795 6.300354 ACTTTCCAATTGTGTTACTTCTCG 57.700 37.500 4.43 0.00 0.00 4.04
2334 3796 4.742438 TTCCAATTGTGTTACTTCTCGC 57.258 40.909 4.43 0.00 0.00 5.03
2335 3797 4.002906 TCCAATTGTGTTACTTCTCGCT 57.997 40.909 4.43 0.00 0.00 4.93
2336 3798 5.142061 TCCAATTGTGTTACTTCTCGCTA 57.858 39.130 4.43 0.00 0.00 4.26
2337 3799 4.927425 TCCAATTGTGTTACTTCTCGCTAC 59.073 41.667 4.43 0.00 0.00 3.58
2338 3800 4.688879 CCAATTGTGTTACTTCTCGCTACA 59.311 41.667 4.43 0.00 0.00 2.74
2339 3801 5.351465 CCAATTGTGTTACTTCTCGCTACAT 59.649 40.000 4.43 0.00 0.00 2.29
2343 3805 9.811995 AATTGTGTTACTTCTCGCTACATATAA 57.188 29.630 0.00 0.00 0.00 0.98
2379 3841 9.410556 CTTTAGGTGATTTATGGTCAAAACTTG 57.589 33.333 0.00 0.00 0.00 3.16
2409 3871 1.880027 ACGAATCTTGGGCTCACAAAC 59.120 47.619 0.00 0.00 0.00 2.93
2420 3882 5.324409 TGGGCTCACAAACTGATTTCTTAT 58.676 37.500 0.00 0.00 0.00 1.73
2486 4749 4.081406 CAATGAACAAGAGTGGGGATCAA 58.919 43.478 0.00 0.00 0.00 2.57
2488 4751 2.711009 TGAACAAGAGTGGGGATCAAGT 59.289 45.455 0.00 0.00 0.00 3.16
2541 4805 2.921754 GGTTTGGTCGAACTGTAGATCG 59.078 50.000 0.33 5.34 40.92 3.69
2542 4806 2.921754 GTTTGGTCGAACTGTAGATCGG 59.078 50.000 0.33 0.00 40.15 4.18
2549 4813 4.012374 TCGAACTGTAGATCGGGTTAGTT 58.988 43.478 10.89 0.00 40.15 2.24
2550 4814 4.095483 TCGAACTGTAGATCGGGTTAGTTC 59.905 45.833 10.89 15.25 40.15 3.01
2551 4815 4.096081 CGAACTGTAGATCGGGTTAGTTCT 59.904 45.833 19.30 0.00 40.91 3.01
2552 4816 5.295292 CGAACTGTAGATCGGGTTAGTTCTA 59.705 44.000 19.30 0.00 40.91 2.10
2553 4817 6.017275 CGAACTGTAGATCGGGTTAGTTCTAT 60.017 42.308 19.30 0.00 40.91 1.98
2554 4818 6.636562 ACTGTAGATCGGGTTAGTTCTATG 57.363 41.667 0.00 0.00 0.00 2.23
2555 4819 5.009811 ACTGTAGATCGGGTTAGTTCTATGC 59.990 44.000 0.00 0.00 0.00 3.14
2556 4820 4.891168 TGTAGATCGGGTTAGTTCTATGCA 59.109 41.667 0.00 0.00 0.00 3.96
2557 4821 4.323553 AGATCGGGTTAGTTCTATGCAC 57.676 45.455 0.00 0.00 0.00 4.57
2558 4822 3.704566 AGATCGGGTTAGTTCTATGCACA 59.295 43.478 0.00 0.00 0.00 4.57
2559 4823 3.965379 TCGGGTTAGTTCTATGCACAA 57.035 42.857 0.00 0.00 0.00 3.33
2560 4824 4.274602 TCGGGTTAGTTCTATGCACAAA 57.725 40.909 0.00 0.00 0.00 2.83
2561 4825 4.643463 TCGGGTTAGTTCTATGCACAAAA 58.357 39.130 0.00 0.00 0.00 2.44
2562 4826 4.453136 TCGGGTTAGTTCTATGCACAAAAC 59.547 41.667 0.00 0.00 0.00 2.43
2563 4827 4.668177 CGGGTTAGTTCTATGCACAAAACG 60.668 45.833 0.00 0.00 0.00 3.60
2564 4828 4.156182 GGTTAGTTCTATGCACAAAACGC 58.844 43.478 0.00 0.00 0.00 4.84
2565 4829 4.319911 GGTTAGTTCTATGCACAAAACGCA 60.320 41.667 0.00 0.00 44.94 5.24
2585 4849 4.153296 CGCATGTTGTTAGTGGTTACATCA 59.847 41.667 0.00 0.00 0.00 3.07
2586 4850 5.631026 GCATGTTGTTAGTGGTTACATCAG 58.369 41.667 0.00 0.00 30.20 2.90
2588 4852 6.602179 CATGTTGTTAGTGGTTACATCAGTG 58.398 40.000 0.00 0.00 30.20 3.66
2594 4858 6.600032 TGTTAGTGGTTACATCAGTGTTTTGT 59.400 34.615 0.00 0.00 39.77 2.83
2595 4859 5.499139 AGTGGTTACATCAGTGTTTTGTG 57.501 39.130 6.44 0.00 39.77 3.33
2601 4865 4.652421 ACATCAGTGTTTTGTGCAATCA 57.348 36.364 0.00 0.00 34.01 2.57
2675 4939 3.004106 GCAAATGCAAACACTGTCTCTCT 59.996 43.478 0.00 0.00 41.59 3.10
2679 4943 2.961741 TGCAAACACTGTCTCTCTCTCT 59.038 45.455 0.00 0.00 0.00 3.10
2681 4945 3.255642 GCAAACACTGTCTCTCTCTCTCT 59.744 47.826 0.00 0.00 0.00 3.10
2687 4979 3.072330 ACTGTCTCTCTCTCTCTCACACA 59.928 47.826 0.00 0.00 0.00 3.72
2699 4991 2.938451 CTCTCACACACACACACACATT 59.062 45.455 0.00 0.00 0.00 2.71
2724 5016 5.761726 CCTATGAACACATGCACACATATCT 59.238 40.000 0.00 0.00 33.67 1.98
2727 5019 7.812690 ATGAACACATGCACACATATCTTAT 57.187 32.000 0.00 0.00 33.67 1.73
2745 5038 5.080337 TCTTATCTTATGAGCACCTCCGAT 58.920 41.667 0.00 0.00 0.00 4.18
2749 5042 4.667573 TCTTATGAGCACCTCCGATAGAT 58.332 43.478 0.00 0.00 39.76 1.98
2788 5081 5.363101 TGAGATTGATGAAGTCACCATAGC 58.637 41.667 0.00 0.00 36.32 2.97
2789 5082 5.104817 TGAGATTGATGAAGTCACCATAGCA 60.105 40.000 0.00 0.00 36.32 3.49
2791 5084 4.824479 TTGATGAAGTCACCATAGCAGA 57.176 40.909 0.00 0.00 36.32 4.26
2792 5085 5.363562 TTGATGAAGTCACCATAGCAGAT 57.636 39.130 0.00 0.00 36.32 2.90
2800 5124 6.791867 AGTCACCATAGCAGATTTGTAGTA 57.208 37.500 0.00 0.00 0.00 1.82
2807 5131 7.095910 CCATAGCAGATTTGTAGTAGATGGAG 58.904 42.308 0.00 0.00 0.00 3.86
2809 5133 6.992664 AGCAGATTTGTAGTAGATGGAGAT 57.007 37.500 0.00 0.00 0.00 2.75
2811 5135 6.552725 AGCAGATTTGTAGTAGATGGAGATGA 59.447 38.462 0.00 0.00 0.00 2.92
2812 5136 7.235193 AGCAGATTTGTAGTAGATGGAGATGAT 59.765 37.037 0.00 0.00 0.00 2.45
2822 5150 5.279255 AGATGGAGATGATCACTGAACAG 57.721 43.478 0.00 0.00 0.00 3.16
2827 5155 6.131961 TGGAGATGATCACTGAACAGATAGA 58.868 40.000 8.87 4.28 0.00 1.98
2828 5156 6.264970 TGGAGATGATCACTGAACAGATAGAG 59.735 42.308 8.87 0.00 0.00 2.43
2829 5157 6.265196 GGAGATGATCACTGAACAGATAGAGT 59.735 42.308 8.87 0.00 0.00 3.24
2836 5164 5.098893 CACTGAACAGATAGAGTCGGAAAG 58.901 45.833 8.87 0.00 0.00 2.62
2837 5165 4.767928 ACTGAACAGATAGAGTCGGAAAGT 59.232 41.667 8.87 0.00 0.00 2.66
2885 5216 0.249120 CCCATGCCAAGTCTACGACA 59.751 55.000 0.00 0.00 34.60 4.35
2891 5222 2.299013 TGCCAAGTCTACGACATGAACT 59.701 45.455 0.00 0.00 33.78 3.01
2903 5234 1.556911 ACATGAACTCTAGTGGGCAGG 59.443 52.381 0.00 0.00 0.00 4.85
2909 5240 1.207791 CTCTAGTGGGCAGGTTCCAT 58.792 55.000 0.00 0.00 36.58 3.41
2915 5246 1.074775 GGGCAGGTTCCATCACACA 59.925 57.895 0.00 0.00 0.00 3.72
3065 5436 4.536090 TCCCTGTTCCAGATAAACATCACT 59.464 41.667 0.00 0.00 36.14 3.41
3142 5513 0.533755 AGGCGTCTTCCATGCTATGC 60.534 55.000 0.00 0.00 37.18 3.14
3145 5516 2.483876 GCGTCTTCCATGCTATGCTTA 58.516 47.619 0.00 0.00 33.71 3.09
3346 5718 1.475751 CCCAATAGCCTCATTGAGCGT 60.476 52.381 8.23 0.10 38.01 5.07
3347 5719 2.224281 CCCAATAGCCTCATTGAGCGTA 60.224 50.000 8.23 2.35 38.01 4.42
3368 5740 0.984230 TCGTCAAGAGGAGGGCAAAT 59.016 50.000 0.00 0.00 32.28 2.32
3388 5760 2.839486 TTGTGCTCAAGAAGATCCGT 57.161 45.000 0.00 0.00 0.00 4.69
3503 5875 2.747686 GCAACCGTCCCCTTCTCA 59.252 61.111 0.00 0.00 0.00 3.27
3549 5921 3.537580 TCCAGCAATTGACCGGTATAAC 58.462 45.455 7.34 0.00 0.00 1.89
3672 6044 7.428282 TGTCAACGTTTGTATCAATGTACAT 57.572 32.000 1.41 1.41 34.76 2.29
3697 6069 1.152819 CCGAGTGGGGAGACGGATA 60.153 63.158 0.00 0.00 46.94 2.59
3706 6078 1.618837 GGGAGACGGATATTGCTGCTA 59.381 52.381 0.00 0.00 0.00 3.49
3744 6117 2.271800 GTTCCTCTCGTTAGTGCCATG 58.728 52.381 0.00 0.00 0.00 3.66
3747 6120 0.176680 CTCTCGTTAGTGCCATGGCT 59.823 55.000 35.53 20.42 42.51 4.75
3800 6173 1.305802 ACCACCTCGGCCATGACTA 60.306 57.895 2.24 0.00 39.03 2.59
3853 6226 0.542232 CGGATCTCGGATAGGGGGTT 60.542 60.000 0.00 0.00 34.75 4.11
3871 6244 3.514645 GGTTCCGAACTATGCGTCTAAA 58.485 45.455 11.03 0.00 0.00 1.85
3910 6283 2.874457 GCAGGGGACACGATGTTTTACT 60.874 50.000 0.00 0.00 0.00 2.24
4048 6423 8.609617 AAGCTAGCCTATGGTATGATTGTATA 57.390 34.615 12.13 0.00 0.00 1.47
4115 6490 2.565834 GGGCTAGAGTTACACAAGGTCA 59.434 50.000 0.00 0.00 0.00 4.02
4163 6538 2.743183 CGTATTGCCTAGCTTGCCTTCT 60.743 50.000 0.00 0.00 0.00 2.85
4228 6603 6.825213 TCAATCTTGTATCTTCATGGTCCAAG 59.175 38.462 0.00 0.00 0.00 3.61
4236 6611 0.544357 TCATGGTCCAAGAGTCCGGT 60.544 55.000 0.00 0.00 0.00 5.28
4308 6683 4.678743 GCCCCCGAACCAGGCTTT 62.679 66.667 0.00 0.00 43.62 3.51
4495 6872 2.539476 CAGGGCATTTTTACATTCGCC 58.461 47.619 0.00 0.00 38.85 5.54
4552 6930 8.054931 AGGAATGAGGATTCTTAGATCCAATT 57.945 34.615 6.67 5.83 46.61 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.325583 TCCATTACAAGTCATCCGGC 57.674 50.000 0.00 0.00 0.00 6.13
11 13 6.742718 CGTTCAATGTTCCATTACAAGTCATC 59.257 38.462 0.00 0.00 0.00 2.92
18 20 3.364465 CGTGCGTTCAATGTTCCATTACA 60.364 43.478 0.00 0.00 0.00 2.41
49 51 5.511373 CCCTTGTCAGATCTAGTGTCAAACA 60.511 44.000 0.00 0.00 0.00 2.83
53 55 3.099905 CCCCTTGTCAGATCTAGTGTCA 58.900 50.000 0.00 0.00 0.00 3.58
69 74 0.901580 CATGACAAGCAAGCCCCCTT 60.902 55.000 0.00 0.00 0.00 3.95
75 80 1.542915 ACATCACCATGACAAGCAAGC 59.457 47.619 0.00 0.00 33.72 4.01
83 88 1.033746 CCCTGCCACATCACCATGAC 61.034 60.000 0.00 0.00 33.72 3.06
93 98 3.182887 ACAAATTTATCCCCTGCCACA 57.817 42.857 0.00 0.00 0.00 4.17
113 118 1.168407 GCAGCCTCTGTTGCACTCAA 61.168 55.000 0.00 0.00 46.76 3.02
124 129 0.995024 AACTAATGGTGGCAGCCTCT 59.005 50.000 14.15 0.81 0.00 3.69
130 135 3.287222 GAAGGCATAACTAATGGTGGCA 58.713 45.455 0.00 0.00 39.35 4.92
134 145 5.370880 AGATGAGGAAGGCATAACTAATGGT 59.629 40.000 0.00 0.00 35.99 3.55
140 151 3.706594 TCGAAGATGAGGAAGGCATAACT 59.293 43.478 0.00 0.00 0.00 2.24
141 152 4.054671 CTCGAAGATGAGGAAGGCATAAC 58.945 47.826 0.00 0.00 33.89 1.89
153 164 2.379972 GAGAGGGGTTCTCGAAGATGA 58.620 52.381 0.00 0.00 46.82 2.92
176 187 4.767255 GTCCAGGTGCTCCGGCTG 62.767 72.222 0.00 0.00 39.59 4.85
488 499 1.226311 GTTCCTCCTTGGATGGGGAT 58.774 55.000 0.00 0.00 45.68 3.85
495 506 2.409064 TGTACCTGTTCCTCCTTGGA 57.591 50.000 0.00 0.00 44.51 3.53
496 507 2.305927 ACATGTACCTGTTCCTCCTTGG 59.694 50.000 0.00 0.00 37.10 3.61
497 508 3.703001 ACATGTACCTGTTCCTCCTTG 57.297 47.619 0.00 0.00 0.00 3.61
498 509 5.726793 AGATAACATGTACCTGTTCCTCCTT 59.273 40.000 18.24 0.00 39.88 3.36
499 510 5.281314 AGATAACATGTACCTGTTCCTCCT 58.719 41.667 18.24 9.60 39.88 3.69
532 543 4.656112 AGTGGTAGAGCAGCTATAACCAAT 59.344 41.667 19.67 17.05 0.00 3.16
533 544 4.030913 AGTGGTAGAGCAGCTATAACCAA 58.969 43.478 19.67 6.50 0.00 3.67
534 545 3.643237 AGTGGTAGAGCAGCTATAACCA 58.357 45.455 15.80 15.80 0.00 3.67
539 550 6.049955 TGTAAAAAGTGGTAGAGCAGCTAT 57.950 37.500 0.00 0.00 0.00 2.97
543 554 5.597813 CACTGTAAAAAGTGGTAGAGCAG 57.402 43.478 0.00 0.00 43.22 4.24
551 562 7.630525 AGCCTTTGCACACTGTAAAAAGTGG 62.631 44.000 9.01 0.15 42.78 4.00
554 565 3.798337 CAGCCTTTGCACACTGTAAAAAG 59.202 43.478 0.00 8.06 41.13 2.27
559 570 2.566833 ATCAGCCTTTGCACACTGTA 57.433 45.000 0.00 0.00 41.13 2.74
576 587 0.445043 GTTACACGTCCCGCCAAATC 59.555 55.000 0.00 0.00 0.00 2.17
584 599 5.294060 TGTTAAAAGTCAAGTTACACGTCCC 59.706 40.000 0.00 0.00 0.00 4.46
585 600 6.348621 TGTTAAAAGTCAAGTTACACGTCC 57.651 37.500 0.00 0.00 0.00 4.79
586 601 7.872211 CTTGTTAAAAGTCAAGTTACACGTC 57.128 36.000 0.00 0.00 37.04 4.34
611 626 9.284968 CAGAGTAAATAAAAACAGAGGAAGGAA 57.715 33.333 0.00 0.00 0.00 3.36
612 627 8.437575 ACAGAGTAAATAAAAACAGAGGAAGGA 58.562 33.333 0.00 0.00 0.00 3.36
613 628 8.622948 ACAGAGTAAATAAAAACAGAGGAAGG 57.377 34.615 0.00 0.00 0.00 3.46
655 670 7.540299 TGACCAAATTTTACGAAGTTTGACTT 58.460 30.769 8.19 0.00 42.03 3.01
656 671 7.090953 TGACCAAATTTTACGAAGTTTGACT 57.909 32.000 8.19 0.00 42.03 3.41
657 672 7.486870 ACTTGACCAAATTTTACGAAGTTTGAC 59.513 33.333 8.19 4.22 42.03 3.18
658 673 7.540299 ACTTGACCAAATTTTACGAAGTTTGA 58.460 30.769 8.19 0.00 42.03 2.69
659 674 7.749539 ACTTGACCAAATTTTACGAAGTTTG 57.250 32.000 0.00 0.00 37.78 2.93
660 675 8.766000 AAACTTGACCAAATTTTACGAAGTTT 57.234 26.923 15.57 15.57 37.78 2.66
709 724 7.067372 ACATCACACCATGTAGATTTGTTATGG 59.933 37.037 0.00 0.00 43.02 2.74
710 725 7.988737 ACATCACACCATGTAGATTTGTTATG 58.011 34.615 0.00 4.91 35.10 1.90
711 726 9.679661 TTACATCACACCATGTAGATTTGTTAT 57.320 29.630 0.00 0.00 39.79 1.89
712 727 9.508642 TTTACATCACACCATGTAGATTTGTTA 57.491 29.630 0.00 0.00 39.79 2.41
713 728 7.994425 TTACATCACACCATGTAGATTTGTT 57.006 32.000 0.00 0.00 39.79 2.83
714 729 7.994425 TTTACATCACACCATGTAGATTTGT 57.006 32.000 0.00 0.00 39.79 2.83
715 730 8.514594 ACTTTTACATCACACCATGTAGATTTG 58.485 33.333 0.00 0.00 39.79 2.32
716 731 8.514594 CACTTTTACATCACACCATGTAGATTT 58.485 33.333 0.00 0.00 39.79 2.17
717 732 7.362056 GCACTTTTACATCACACCATGTAGATT 60.362 37.037 0.00 0.00 39.79 2.40
718 733 6.094048 GCACTTTTACATCACACCATGTAGAT 59.906 38.462 0.00 0.00 39.79 1.98
719 734 5.411361 GCACTTTTACATCACACCATGTAGA 59.589 40.000 0.00 0.00 39.79 2.59
720 735 5.181056 TGCACTTTTACATCACACCATGTAG 59.819 40.000 0.00 0.00 39.79 2.74
721 736 5.066593 TGCACTTTTACATCACACCATGTA 58.933 37.500 0.00 0.00 38.07 2.29
722 737 3.888323 TGCACTTTTACATCACACCATGT 59.112 39.130 0.00 0.00 40.28 3.21
723 738 4.502171 TGCACTTTTACATCACACCATG 57.498 40.909 0.00 0.00 0.00 3.66
724 739 5.243507 TGAATGCACTTTTACATCACACCAT 59.756 36.000 0.00 0.00 0.00 3.55
725 740 4.582240 TGAATGCACTTTTACATCACACCA 59.418 37.500 0.00 0.00 0.00 4.17
726 741 5.119931 TGAATGCACTTTTACATCACACC 57.880 39.130 0.00 0.00 0.00 4.16
727 742 8.741101 TTATTGAATGCACTTTTACATCACAC 57.259 30.769 0.00 0.00 0.00 3.82
806 821 9.631639 GGTCAAAGTTAATCGTTGAAAATTTTG 57.368 29.630 8.47 0.00 43.60 2.44
807 822 9.372369 TGGTCAAAGTTAATCGTTGAAAATTTT 57.628 25.926 2.28 2.28 43.60 1.82
808 823 8.934507 TGGTCAAAGTTAATCGTTGAAAATTT 57.065 26.923 7.55 0.00 43.60 1.82
809 824 8.934507 TTGGTCAAAGTTAATCGTTGAAAATT 57.065 26.923 7.55 0.00 43.60 1.82
810 825 8.934507 TTTGGTCAAAGTTAATCGTTGAAAAT 57.065 26.923 7.55 0.00 43.60 1.82
811 826 8.648968 GTTTTGGTCAAAGTTAATCGTTGAAAA 58.351 29.630 7.55 4.84 43.60 2.29
812 827 8.030106 AGTTTTGGTCAAAGTTAATCGTTGAAA 58.970 29.630 7.55 0.57 43.60 2.69
813 828 7.540299 AGTTTTGGTCAAAGTTAATCGTTGAA 58.460 30.769 7.55 0.00 43.60 2.69
814 829 7.090953 AGTTTTGGTCAAAGTTAATCGTTGA 57.909 32.000 0.00 3.61 40.90 3.18
815 830 8.844441 TTAGTTTTGGTCAAAGTTAATCGTTG 57.156 30.769 0.00 0.00 36.98 4.10
820 835 9.887406 CGTGTATTAGTTTTGGTCAAAGTTAAT 57.113 29.630 13.63 13.63 31.64 1.40
821 836 8.344098 CCGTGTATTAGTTTTGGTCAAAGTTAA 58.656 33.333 0.00 1.67 30.16 2.01
822 837 7.714377 TCCGTGTATTAGTTTTGGTCAAAGTTA 59.286 33.333 0.00 0.00 30.16 2.24
823 838 6.543100 TCCGTGTATTAGTTTTGGTCAAAGTT 59.457 34.615 0.00 0.00 30.16 2.66
824 839 6.017687 GTCCGTGTATTAGTTTTGGTCAAAGT 60.018 38.462 0.00 0.00 32.41 2.66
825 840 6.204108 AGTCCGTGTATTAGTTTTGGTCAAAG 59.796 38.462 0.00 0.00 0.00 2.77
826 841 6.056884 AGTCCGTGTATTAGTTTTGGTCAAA 58.943 36.000 0.00 0.00 0.00 2.69
827 842 5.613329 AGTCCGTGTATTAGTTTTGGTCAA 58.387 37.500 0.00 0.00 0.00 3.18
828 843 5.217978 AGTCCGTGTATTAGTTTTGGTCA 57.782 39.130 0.00 0.00 0.00 4.02
829 844 7.656707 TTTAGTCCGTGTATTAGTTTTGGTC 57.343 36.000 0.00 0.00 0.00 4.02
830 845 9.723601 TTATTTAGTCCGTGTATTAGTTTTGGT 57.276 29.630 0.00 0.00 0.00 3.67
839 854 9.675464 TCTCCATTTTTATTTAGTCCGTGTATT 57.325 29.630 0.00 0.00 0.00 1.89
840 855 9.326413 CTCTCCATTTTTATTTAGTCCGTGTAT 57.674 33.333 0.00 0.00 0.00 2.29
841 856 8.316214 ACTCTCCATTTTTATTTAGTCCGTGTA 58.684 33.333 0.00 0.00 0.00 2.90
842 857 7.166167 ACTCTCCATTTTTATTTAGTCCGTGT 58.834 34.615 0.00 0.00 0.00 4.49
843 858 7.201617 GGACTCTCCATTTTTATTTAGTCCGTG 60.202 40.741 0.00 0.00 41.54 4.94
844 859 6.822170 GGACTCTCCATTTTTATTTAGTCCGT 59.178 38.462 0.00 0.00 41.54 4.69
845 860 7.247929 GGACTCTCCATTTTTATTTAGTCCG 57.752 40.000 0.00 0.00 41.54 4.79
862 877 1.190643 CCACAAGGAGGAGGACTCTC 58.809 60.000 0.00 0.00 45.83 3.20
863 878 0.787084 TCCACAAGGAGGAGGACTCT 59.213 55.000 0.00 0.00 45.83 3.24
864 879 3.383162 TCCACAAGGAGGAGGACTC 57.617 57.895 0.00 0.00 45.84 3.36
892 907 2.280797 GCCGCTGGTCAGTCAACA 60.281 61.111 0.00 0.00 0.00 3.33
954 969 4.345286 AGGCAGGGCAGGGAGACT 62.345 66.667 0.00 0.00 0.00 3.24
972 987 1.374252 GCTGTCGGTGTACACAGGG 60.374 63.158 26.51 15.09 40.45 4.45
975 990 1.110518 TCCAGCTGTCGGTGTACACA 61.111 55.000 26.51 5.07 36.93 3.72
998 1013 9.092322 CAATTCAAAGTAAATATATCACGCGAC 57.908 33.333 15.93 0.00 0.00 5.19
1019 1034 7.814107 TGTGTATTTTCTTCAGGCAATCAATTC 59.186 33.333 0.00 0.00 0.00 2.17
1020 1035 7.669427 TGTGTATTTTCTTCAGGCAATCAATT 58.331 30.769 0.00 0.00 0.00 2.32
1022 1037 6.489700 TCTGTGTATTTTCTTCAGGCAATCAA 59.510 34.615 0.00 0.00 0.00 2.57
1050 1070 0.896226 AAGACGGAACTAGGAGCCAC 59.104 55.000 0.00 0.00 0.00 5.01
1052 1072 4.370049 GAAATAAGACGGAACTAGGAGCC 58.630 47.826 0.00 0.00 0.00 4.70
1067 1087 3.891366 CCCAAGGTAGCCATGGAAATAAG 59.109 47.826 18.40 0.00 44.32 1.73
1193 1213 1.227263 CCGTAGGCGTGATCTTGGG 60.227 63.158 0.00 0.00 46.14 4.12
1342 1381 0.884704 CACCCCGCCTATGCATACAC 60.885 60.000 1.16 0.00 37.32 2.90
1343 1382 1.051556 TCACCCCGCCTATGCATACA 61.052 55.000 1.16 0.00 37.32 2.29
1344 1383 0.602905 GTCACCCCGCCTATGCATAC 60.603 60.000 1.16 0.00 37.32 2.39
1345 1384 1.051556 TGTCACCCCGCCTATGCATA 61.052 55.000 6.20 6.20 37.32 3.14
1346 1385 1.708993 ATGTCACCCCGCCTATGCAT 61.709 55.000 3.79 3.79 37.32 3.96
1454 1493 0.692476 TAAAGAGCTGCAGGCCTTGA 59.308 50.000 17.12 4.51 43.05 3.02
1582 1621 0.801836 GCCATTGAAAATGACGCCGG 60.802 55.000 0.00 0.00 0.00 6.13
1607 1646 3.917760 AGCATACCGAGGCTCCGC 61.918 66.667 9.32 4.28 38.69 5.54
1612 1651 0.664767 GACGATGAGCATACCGAGGC 60.665 60.000 0.00 0.00 0.00 4.70
1692 1731 7.505248 TGGGAGCTGCATAACATATAATTTGAA 59.495 33.333 7.79 0.00 0.00 2.69
1701 1740 3.961849 TGTTTGGGAGCTGCATAACATA 58.038 40.909 16.63 0.63 0.00 2.29
1702 1741 2.806434 TGTTTGGGAGCTGCATAACAT 58.194 42.857 16.63 0.00 0.00 2.71
1703 1742 2.284754 TGTTTGGGAGCTGCATAACA 57.715 45.000 16.63 16.63 0.00 2.41
1704 1743 3.658757 TTTGTTTGGGAGCTGCATAAC 57.341 42.857 7.79 10.83 0.00 1.89
1706 1745 3.640967 AGTTTTTGTTTGGGAGCTGCATA 59.359 39.130 7.79 0.00 0.00 3.14
1707 1746 2.435437 AGTTTTTGTTTGGGAGCTGCAT 59.565 40.909 7.79 0.00 0.00 3.96
1708 1747 1.830477 AGTTTTTGTTTGGGAGCTGCA 59.170 42.857 7.79 0.00 0.00 4.41
1709 1748 2.602257 AGTTTTTGTTTGGGAGCTGC 57.398 45.000 0.00 0.00 0.00 5.25
1710 1749 6.511605 GCATTTTAGTTTTTGTTTGGGAGCTG 60.512 38.462 0.00 0.00 0.00 4.24
1711 1750 5.527214 GCATTTTAGTTTTTGTTTGGGAGCT 59.473 36.000 0.00 0.00 0.00 4.09
1712 1751 5.295540 TGCATTTTAGTTTTTGTTTGGGAGC 59.704 36.000 0.00 0.00 0.00 4.70
1713 1752 6.917217 TGCATTTTAGTTTTTGTTTGGGAG 57.083 33.333 0.00 0.00 0.00 4.30
1714 1753 6.881602 ACTTGCATTTTAGTTTTTGTTTGGGA 59.118 30.769 0.00 0.00 0.00 4.37
1715 1754 6.966066 CACTTGCATTTTAGTTTTTGTTTGGG 59.034 34.615 0.00 0.00 0.00 4.12
1717 1756 7.525759 ACCACTTGCATTTTAGTTTTTGTTTG 58.474 30.769 0.00 0.00 0.00 2.93
1767 2393 9.892130 ACAAATATTTAGAAACAGAGGGAGTAG 57.108 33.333 0.00 0.00 0.00 2.57
1804 2430 9.832445 ATCCGTATGTAGTAGTTCATTTGAAAT 57.168 29.630 0.00 0.00 35.58 2.17
1858 2484 9.114952 TGAGTACATACAAAACAAAATGAGTGA 57.885 29.630 0.00 0.00 0.00 3.41
1902 2528 9.374711 TCCCTCTGTTCCTAAATATTTGTTTTT 57.625 29.630 11.05 0.00 0.00 1.94
1903 2529 8.950007 TCCCTCTGTTCCTAAATATTTGTTTT 57.050 30.769 11.05 0.00 0.00 2.43
1904 2530 8.170730 ACTCCCTCTGTTCCTAAATATTTGTTT 58.829 33.333 11.05 0.00 0.00 2.83
1905 2531 7.699878 ACTCCCTCTGTTCCTAAATATTTGTT 58.300 34.615 11.05 0.00 0.00 2.83
1906 2532 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
1907 2533 8.705594 TCTACTCCCTCTGTTCCTAAATATTTG 58.294 37.037 11.05 1.40 0.00 2.32
1908 2534 8.855804 TCTACTCCCTCTGTTCCTAAATATTT 57.144 34.615 5.89 5.89 0.00 1.40
1909 2535 8.855804 TTCTACTCCCTCTGTTCCTAAATATT 57.144 34.615 0.00 0.00 0.00 1.28
1910 2536 8.068733 ACTTCTACTCCCTCTGTTCCTAAATAT 58.931 37.037 0.00 0.00 0.00 1.28
1911 2537 7.420029 ACTTCTACTCCCTCTGTTCCTAAATA 58.580 38.462 0.00 0.00 0.00 1.40
1912 2538 6.265304 ACTTCTACTCCCTCTGTTCCTAAAT 58.735 40.000 0.00 0.00 0.00 1.40
1913 2539 5.652324 ACTTCTACTCCCTCTGTTCCTAAA 58.348 41.667 0.00 0.00 0.00 1.85
1914 2540 5.272405 ACTTCTACTCCCTCTGTTCCTAA 57.728 43.478 0.00 0.00 0.00 2.69
1915 2541 4.949966 ACTTCTACTCCCTCTGTTCCTA 57.050 45.455 0.00 0.00 0.00 2.94
1916 2542 3.837399 ACTTCTACTCCCTCTGTTCCT 57.163 47.619 0.00 0.00 0.00 3.36
1917 2543 7.005296 TCATATACTTCTACTCCCTCTGTTCC 58.995 42.308 0.00 0.00 0.00 3.62
1918 2544 7.502895 TGTCATATACTTCTACTCCCTCTGTTC 59.497 40.741 0.00 0.00 0.00 3.18
1919 2545 7.355101 TGTCATATACTTCTACTCCCTCTGTT 58.645 38.462 0.00 0.00 0.00 3.16
1920 2546 6.912426 TGTCATATACTTCTACTCCCTCTGT 58.088 40.000 0.00 0.00 0.00 3.41
1921 2547 6.432783 CCTGTCATATACTTCTACTCCCTCTG 59.567 46.154 0.00 0.00 0.00 3.35
1922 2548 6.103501 ACCTGTCATATACTTCTACTCCCTCT 59.896 42.308 0.00 0.00 0.00 3.69
1923 2549 6.308566 ACCTGTCATATACTTCTACTCCCTC 58.691 44.000 0.00 0.00 0.00 4.30
1924 2550 6.282568 ACCTGTCATATACTTCTACTCCCT 57.717 41.667 0.00 0.00 0.00 4.20
1925 2551 6.980416 AACCTGTCATATACTTCTACTCCC 57.020 41.667 0.00 0.00 0.00 4.30
1945 2571 3.071747 GGATGGGGAGAGTCTGATTAACC 59.928 52.174 0.00 0.00 0.00 2.85
1956 2582 6.144845 ACAATTAATATGGGATGGGGAGAG 57.855 41.667 0.00 0.00 0.00 3.20
1957 2583 5.015178 GGACAATTAATATGGGATGGGGAGA 59.985 44.000 0.00 0.00 0.00 3.71
1958 2584 5.015603 AGGACAATTAATATGGGATGGGGAG 59.984 44.000 0.00 0.00 0.00 4.30
1959 2585 4.925734 AGGACAATTAATATGGGATGGGGA 59.074 41.667 0.00 0.00 0.00 4.81
1960 2586 5.018809 CAGGACAATTAATATGGGATGGGG 58.981 45.833 0.00 0.00 0.00 4.96
1961 2587 5.891198 TCAGGACAATTAATATGGGATGGG 58.109 41.667 0.00 0.00 0.00 4.00
1962 2588 7.287466 TGTTTCAGGACAATTAATATGGGATGG 59.713 37.037 0.00 0.00 0.00 3.51
1963 2589 8.236585 TGTTTCAGGACAATTAATATGGGATG 57.763 34.615 0.00 0.00 0.00 3.51
1966 2592 9.316730 CATTTGTTTCAGGACAATTAATATGGG 57.683 33.333 0.00 0.00 39.12 4.00
1967 2593 9.874205 ACATTTGTTTCAGGACAATTAATATGG 57.126 29.630 0.00 0.00 39.12 2.74
1974 2600 9.739276 TCTAGATACATTTGTTTCAGGACAATT 57.261 29.630 4.38 0.00 39.12 2.32
1975 2601 9.167311 GTCTAGATACATTTGTTTCAGGACAAT 57.833 33.333 0.00 0.00 39.12 2.71
1976 2602 7.330946 CGTCTAGATACATTTGTTTCAGGACAA 59.669 37.037 17.16 0.00 37.73 3.18
1977 2603 6.811665 CGTCTAGATACATTTGTTTCAGGACA 59.188 38.462 17.16 0.00 33.90 4.02
1978 2604 6.812160 ACGTCTAGATACATTTGTTTCAGGAC 59.188 38.462 0.00 8.97 32.62 3.85
1979 2605 6.931838 ACGTCTAGATACATTTGTTTCAGGA 58.068 36.000 0.00 0.14 0.00 3.86
1980 2606 8.873215 ATACGTCTAGATACATTTGTTTCAGG 57.127 34.615 0.00 0.00 0.00 3.86
1983 2609 9.831054 CGAAATACGTCTAGATACATTTGTTTC 57.169 33.333 11.09 7.00 37.22 2.78
1984 2610 9.577110 TCGAAATACGTCTAGATACATTTGTTT 57.423 29.630 11.09 0.69 43.13 2.83
1985 2611 9.745880 ATCGAAATACGTCTAGATACATTTGTT 57.254 29.630 11.09 0.00 43.13 2.83
1986 2612 9.181805 CATCGAAATACGTCTAGATACATTTGT 57.818 33.333 11.09 0.00 43.13 2.83
1987 2613 9.181805 ACATCGAAATACGTCTAGATACATTTG 57.818 33.333 11.09 2.74 43.13 2.32
1988 2614 9.745880 AACATCGAAATACGTCTAGATACATTT 57.254 29.630 0.00 2.12 43.13 2.32
1991 2617 9.264719 TCTAACATCGAAATACGTCTAGATACA 57.735 33.333 0.00 0.00 43.13 2.29
1995 2621 9.264719 TGTATCTAACATCGAAATACGTCTAGA 57.735 33.333 0.00 0.00 36.88 2.43
2011 2637 9.996554 TTGTCTCTCAAAAGAATGTATCTAACA 57.003 29.630 0.00 0.00 37.42 2.41
2024 2650 9.708222 CGTTCCATATTAATTGTCTCTCAAAAG 57.292 33.333 0.00 0.00 39.62 2.27
2025 2651 8.673711 CCGTTCCATATTAATTGTCTCTCAAAA 58.326 33.333 0.00 0.00 39.62 2.44
2026 2652 8.044309 TCCGTTCCATATTAATTGTCTCTCAAA 58.956 33.333 0.00 0.00 39.62 2.69
2027 2653 7.561251 TCCGTTCCATATTAATTGTCTCTCAA 58.439 34.615 0.00 0.00 40.53 3.02
2028 2654 7.119709 TCCGTTCCATATTAATTGTCTCTCA 57.880 36.000 0.00 0.00 0.00 3.27
2029 2655 6.647067 CCTCCGTTCCATATTAATTGTCTCTC 59.353 42.308 0.00 0.00 0.00 3.20
2030 2656 6.464465 CCCTCCGTTCCATATTAATTGTCTCT 60.464 42.308 0.00 0.00 0.00 3.10
2031 2657 5.701290 CCCTCCGTTCCATATTAATTGTCTC 59.299 44.000 0.00 0.00 0.00 3.36
2038 2664 5.210430 TGTACTCCCTCCGTTCCATATTAA 58.790 41.667 0.00 0.00 0.00 1.40
2041 2667 3.323774 TGTACTCCCTCCGTTCCATAT 57.676 47.619 0.00 0.00 0.00 1.78
2043 2669 1.762957 CATGTACTCCCTCCGTTCCAT 59.237 52.381 0.00 0.00 0.00 3.41
2044 2670 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
2045 2671 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
2047 2673 2.154567 TAGCATGTACTCCCTCCGTT 57.845 50.000 0.00 0.00 0.00 4.44
2117 2757 9.213799 CTCATTCATTTAAGCTTCCTACTATCC 57.786 37.037 0.00 0.00 0.00 2.59
2118 2758 9.988815 TCTCATTCATTTAAGCTTCCTACTATC 57.011 33.333 0.00 0.00 0.00 2.08
2122 2762 8.897752 ACAATCTCATTCATTTAAGCTTCCTAC 58.102 33.333 0.00 0.00 0.00 3.18
2154 3610 5.334105 GCTAGCTTCATCGTCAAGAACAAAA 60.334 40.000 7.70 0.00 0.00 2.44
2160 3616 2.099921 GAGGCTAGCTTCATCGTCAAGA 59.900 50.000 21.02 0.00 0.00 3.02
2164 3620 2.586258 TTGAGGCTAGCTTCATCGTC 57.414 50.000 27.81 2.77 32.16 4.20
2169 3625 4.760530 ATGTGTATTGAGGCTAGCTTCA 57.239 40.909 24.28 24.28 0.00 3.02
2188 3649 8.567285 GGACTAATAAATCCCAATGGAGTATG 57.433 38.462 0.00 0.00 46.08 2.39
2294 3756 4.586841 TGGAAAGTTGTTTTGGATCCGAAT 59.413 37.500 15.48 0.00 0.00 3.34
2296 3758 3.556999 TGGAAAGTTGTTTTGGATCCGA 58.443 40.909 7.39 1.27 0.00 4.55
2299 3761 6.538381 ACACAATTGGAAAGTTGTTTTGGATC 59.462 34.615 10.83 0.00 36.48 3.36
2315 3777 4.688879 TGTAGCGAGAAGTAACACAATTGG 59.311 41.667 10.83 1.35 0.00 3.16
2318 3780 9.464714 CTTATATGTAGCGAGAAGTAACACAAT 57.535 33.333 0.00 0.00 0.00 2.71
2379 3841 1.332028 CCAAGATTCGTATTGCGCGTC 60.332 52.381 8.43 0.00 41.07 5.19
2382 3844 0.317020 GCCCAAGATTCGTATTGCGC 60.317 55.000 0.00 0.00 41.07 6.09
2384 3846 2.032178 GTGAGCCCAAGATTCGTATTGC 59.968 50.000 0.00 0.00 0.00 3.56
2385 3847 3.270027 TGTGAGCCCAAGATTCGTATTG 58.730 45.455 0.00 0.00 0.00 1.90
2403 3865 8.602328 TGTGCAAAAATAAGAAATCAGTTTGTG 58.398 29.630 0.00 0.00 0.00 3.33
2437 3899 4.449068 ACACTTGTTGCTCTTGAATAGTCG 59.551 41.667 0.00 0.00 0.00 4.18
2486 4749 4.178956 ACACTTCCACCAAACCAATACT 57.821 40.909 0.00 0.00 0.00 2.12
2488 4751 7.554835 GTGATATACACTTCCACCAAACCAATA 59.445 37.037 0.00 0.00 45.13 1.90
2528 4792 4.096081 AGAACTAACCCGATCTACAGTTCG 59.904 45.833 12.69 3.28 44.08 3.95
2529 4793 5.579564 AGAACTAACCCGATCTACAGTTC 57.420 43.478 11.49 11.49 41.26 3.01
2541 4805 4.719040 CGTTTTGTGCATAGAACTAACCC 58.281 43.478 13.66 0.00 0.00 4.11
2542 4806 4.156182 GCGTTTTGTGCATAGAACTAACC 58.844 43.478 13.66 0.00 0.00 2.85
2554 4818 3.061271 CACTAACAACATGCGTTTTGTGC 60.061 43.478 11.06 0.00 36.08 4.57
2555 4819 3.485378 CCACTAACAACATGCGTTTTGTG 59.515 43.478 11.06 17.67 36.08 3.33
2556 4820 3.129638 ACCACTAACAACATGCGTTTTGT 59.870 39.130 4.60 4.60 37.55 2.83
2557 4821 3.701241 ACCACTAACAACATGCGTTTTG 58.299 40.909 6.44 3.24 31.13 2.44
2558 4822 4.379339 AACCACTAACAACATGCGTTTT 57.621 36.364 6.44 0.00 31.13 2.43
2559 4823 4.335874 TGTAACCACTAACAACATGCGTTT 59.664 37.500 6.44 0.00 31.13 3.60
2560 4824 3.878103 TGTAACCACTAACAACATGCGTT 59.122 39.130 6.38 6.38 35.01 4.84
2561 4825 3.468770 TGTAACCACTAACAACATGCGT 58.531 40.909 0.00 0.00 0.00 5.24
2562 4826 4.153296 TGATGTAACCACTAACAACATGCG 59.847 41.667 0.00 0.00 31.19 4.73
2563 4827 5.181245 ACTGATGTAACCACTAACAACATGC 59.819 40.000 0.00 0.00 31.19 4.06
2564 4828 6.204688 ACACTGATGTAACCACTAACAACATG 59.795 38.462 0.00 0.00 37.26 3.21
2565 4829 6.296026 ACACTGATGTAACCACTAACAACAT 58.704 36.000 0.00 0.00 37.26 2.71
2566 4830 5.676552 ACACTGATGTAACCACTAACAACA 58.323 37.500 0.00 0.00 37.26 3.33
2567 4831 6.613755 AACACTGATGTAACCACTAACAAC 57.386 37.500 0.00 0.00 38.45 3.32
2568 4832 7.121463 ACAAAACACTGATGTAACCACTAACAA 59.879 33.333 0.00 0.00 38.45 2.83
2569 4833 6.600032 ACAAAACACTGATGTAACCACTAACA 59.400 34.615 0.00 0.00 38.45 2.41
2585 4849 6.579666 ATGTCTATGATTGCACAAAACACT 57.420 33.333 0.00 0.00 0.00 3.55
2586 4850 8.915871 AATATGTCTATGATTGCACAAAACAC 57.084 30.769 0.00 0.00 0.00 3.32
2668 4932 3.188460 GTGTGTGTGAGAGAGAGAGAGAC 59.812 52.174 0.00 0.00 0.00 3.36
2669 4933 3.181450 TGTGTGTGTGAGAGAGAGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
2671 4935 2.881513 GTGTGTGTGTGAGAGAGAGAGA 59.118 50.000 0.00 0.00 0.00 3.10
2672 4936 2.620585 TGTGTGTGTGTGAGAGAGAGAG 59.379 50.000 0.00 0.00 0.00 3.20
2675 4939 2.099405 TGTGTGTGTGTGTGAGAGAGA 58.901 47.619 0.00 0.00 0.00 3.10
2679 4943 2.689553 ATGTGTGTGTGTGTGTGAGA 57.310 45.000 0.00 0.00 0.00 3.27
2681 4945 2.013400 GGAATGTGTGTGTGTGTGTGA 58.987 47.619 0.00 0.00 0.00 3.58
2687 4979 4.515191 GTGTTCATAGGAATGTGTGTGTGT 59.485 41.667 0.00 0.00 35.05 3.72
2699 4991 3.415457 TGTGTGCATGTGTTCATAGGA 57.585 42.857 0.00 0.00 32.47 2.94
2724 5016 6.246163 TCTATCGGAGGTGCTCATAAGATAA 58.754 40.000 0.00 0.00 31.08 1.75
2727 5019 4.100279 TCTATCGGAGGTGCTCATAAGA 57.900 45.455 0.00 0.00 31.08 2.10
2745 5038 3.954258 TCAAGATCTGTCGGCTCAATCTA 59.046 43.478 0.00 0.00 0.00 1.98
2749 5042 2.171003 TCTCAAGATCTGTCGGCTCAA 58.829 47.619 0.00 0.00 0.00 3.02
2788 5081 8.583296 TGATCATCTCCATCTACTACAAATCTG 58.417 37.037 0.00 0.00 0.00 2.90
2789 5082 8.584157 GTGATCATCTCCATCTACTACAAATCT 58.416 37.037 0.00 0.00 0.00 2.40
2791 5084 8.366401 CAGTGATCATCTCCATCTACTACAAAT 58.634 37.037 0.00 0.00 0.00 2.32
2792 5085 7.561356 TCAGTGATCATCTCCATCTACTACAAA 59.439 37.037 0.00 0.00 0.00 2.83
2800 5124 4.961099 TCTGTTCAGTGATCATCTCCATCT 59.039 41.667 0.00 0.00 0.00 2.90
2807 5131 6.142139 CGACTCTATCTGTTCAGTGATCATC 58.858 44.000 0.00 0.00 0.00 2.92
2809 5133 4.336713 CCGACTCTATCTGTTCAGTGATCA 59.663 45.833 3.91 3.91 0.00 2.92
2811 5135 4.527944 TCCGACTCTATCTGTTCAGTGAT 58.472 43.478 0.00 0.00 0.00 3.06
2812 5136 3.951663 TCCGACTCTATCTGTTCAGTGA 58.048 45.455 0.00 0.00 0.00 3.41
2827 5155 7.419711 TGGATTTATTCTAGACTTTCCGACT 57.580 36.000 0.00 0.00 0.00 4.18
2828 5156 7.980099 TCTTGGATTTATTCTAGACTTTCCGAC 59.020 37.037 0.00 0.00 0.00 4.79
2829 5157 8.074613 TCTTGGATTTATTCTAGACTTTCCGA 57.925 34.615 0.00 0.00 0.00 4.55
2859 5190 2.034066 CTTGGCATGGGTGGTCGT 59.966 61.111 0.00 0.00 0.00 4.34
2885 5216 1.958288 ACCTGCCCACTAGAGTTCAT 58.042 50.000 0.00 0.00 0.00 2.57
2891 5222 1.204146 GATGGAACCTGCCCACTAGA 58.796 55.000 0.00 0.00 36.36 2.43
2903 5234 6.058183 AGGCTATTATTCTGTGTGATGGAAC 58.942 40.000 0.00 0.00 0.00 3.62
3024 5390 2.437002 GGCCACCGCGGATTGTAA 60.437 61.111 35.90 0.00 36.56 2.41
3065 5436 1.284408 GGCGAACAAAATGCCGACA 59.716 52.632 0.00 0.00 39.30 4.35
3346 5718 0.039180 TGCCCTCCTCTTGACGACTA 59.961 55.000 0.00 0.00 0.00 2.59
3347 5719 0.832135 TTGCCCTCCTCTTGACGACT 60.832 55.000 0.00 0.00 0.00 4.18
3368 5740 2.807967 CACGGATCTTCTTGAGCACAAA 59.192 45.455 0.00 0.00 35.49 2.83
3388 5760 3.800685 CTCCACGTTGTCGGTGCCA 62.801 63.158 0.00 0.00 41.85 4.92
3503 5875 2.090324 TCTGGAGGAGGATGGTGATCAT 60.090 50.000 0.00 0.00 39.13 2.45
3549 5921 1.498865 GGCGTAGAACATGATGGCGG 61.499 60.000 0.00 0.00 0.00 6.13
3672 6044 0.406750 TCTCCCCACTCGGTCTACAA 59.593 55.000 0.00 0.00 0.00 2.41
3706 6078 2.751436 ATTTGCACGCCGGCATCT 60.751 55.556 28.98 4.56 44.48 2.90
3744 6117 0.036732 TTGTCCTCATCACCACAGCC 59.963 55.000 0.00 0.00 0.00 4.85
3747 6120 0.692476 CCCTTGTCCTCATCACCACA 59.308 55.000 0.00 0.00 0.00 4.17
3800 6173 0.392998 GACAACGACCATGATGGCCT 60.393 55.000 12.25 0.00 42.67 5.19
3844 6217 1.697982 GCATAGTTCGGAACCCCCTAT 59.302 52.381 16.84 5.99 0.00 2.57
3853 6226 2.793585 CGCTTTAGACGCATAGTTCGGA 60.794 50.000 0.00 0.00 0.00 4.55
3871 6244 1.972660 GCCTCCTGTTACCATCCGCT 61.973 60.000 0.00 0.00 0.00 5.52
3910 6283 2.203938 AAGAGGGCCCGAACCTGA 60.204 61.111 18.44 0.00 38.79 3.86
3973 6347 4.642885 GGTAGATCAACTCTGTACTGCTCT 59.357 45.833 0.00 0.00 35.28 4.09
3977 6351 4.395231 TCGTGGTAGATCAACTCTGTACTG 59.605 45.833 0.00 0.00 35.28 2.74
4048 6423 5.045797 GGAGGGTTTTAGTCTGTAGGACAAT 60.046 44.000 0.00 0.00 46.72 2.71
4163 6538 3.501062 CGGATGATACTCTACTTGGCGTA 59.499 47.826 0.00 0.00 0.00 4.42
4228 6603 5.480205 GGATTATATCCTTTGACCGGACTC 58.520 45.833 9.46 0.00 46.19 3.36
4236 6611 8.407190 TCTGGACATCCGGATTATATCCTTTGA 61.407 40.741 24.18 18.59 46.04 2.69
4308 6683 1.536072 GCGCCAGACTCATCGTCATTA 60.536 52.381 0.00 0.00 45.32 1.90
4323 6698 4.908687 AGACAACACTGCGCGCCA 62.909 61.111 30.77 15.83 0.00 5.69
4495 6872 6.314917 ACAATTTATTTATCTGGCTAGGGGG 58.685 40.000 0.00 0.00 0.00 5.40
4496 6873 7.234355 AGACAATTTATTTATCTGGCTAGGGG 58.766 38.462 0.00 0.00 0.00 4.79
4534 6912 8.280258 TGGTATGAATTGGATCTAAGAATCCT 57.720 34.615 0.00 0.00 44.76 3.24
4552 6930 0.768221 GCTGGGGGAGGATGGTATGA 60.768 60.000 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.