Multiple sequence alignment - TraesCS6A01G351500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G351500 chr6A 100.000 3035 0 0 1 3035 584509553 584506519 0.000000e+00 5605.0
1 TraesCS6A01G351500 chr6A 94.118 765 30 5 1367 2130 584531254 584530504 0.000000e+00 1149.0
2 TraesCS6A01G351500 chr6A 89.554 919 43 19 2128 3035 584530574 584529698 0.000000e+00 1116.0
3 TraesCS6A01G351500 chr6A 90.000 890 31 17 429 1279 584542416 584541546 0.000000e+00 1098.0
4 TraesCS6A01G351500 chr6A 81.529 157 28 1 2305 2461 85124399 85124244 8.830000e-26 128.0
5 TraesCS6A01G351500 chr6A 95.775 71 3 0 2060 2130 584507426 584507356 6.880000e-22 115.0
6 TraesCS6A01G351500 chr6A 95.775 71 3 0 2128 2198 584507494 584507424 6.880000e-22 115.0
7 TraesCS6A01G351500 chr6A 92.857 70 3 2 353 422 38946847 38946780 1.930000e-17 100.0
8 TraesCS6A01G351500 chr6D 93.223 782 24 12 991 1752 436405196 436404424 0.000000e+00 1123.0
9 TraesCS6A01G351500 chr6D 86.826 334 22 13 1803 2130 436404224 436403907 1.340000e-93 353.0
10 TraesCS6A01G351500 chr6D 88.112 286 25 6 2752 3034 436375403 436375124 6.270000e-87 331.0
11 TraesCS6A01G351500 chr6D 89.007 282 8 9 686 955 436405464 436405194 8.110000e-86 327.0
12 TraesCS6A01G351500 chr6D 84.711 242 16 6 428 656 436405697 436405464 3.940000e-54 222.0
13 TraesCS6A01G351500 chr6D 85.606 132 16 3 2489 2617 344799836 344799967 5.280000e-28 135.0
14 TraesCS6A01G351500 chr6D 94.286 70 2 2 353 422 392406839 392406772 4.140000e-19 106.0
15 TraesCS6A01G351500 chr6D 91.781 73 4 2 351 422 382616608 382616679 1.930000e-17 100.0
16 TraesCS6A01G351500 chr6D 100.000 30 0 0 2461 2490 436403894 436403865 4.230000e-04 56.5
17 TraesCS6A01G351500 chr1D 93.365 422 15 5 1 422 258360900 258360492 2.000000e-171 612.0
18 TraesCS6A01G351500 chr1D 82.166 157 27 1 2305 2461 417625866 417626021 1.900000e-27 134.0
19 TraesCS6A01G351500 chr1D 81.529 157 28 1 2305 2461 481697855 481698010 8.830000e-26 128.0
20 TraesCS6A01G351500 chr6B 86.641 524 32 18 2489 2995 659608158 659607656 2.060000e-151 545.0
21 TraesCS6A01G351500 chr6B 84.813 507 34 21 2489 2989 659595160 659594691 1.270000e-128 470.0
22 TraesCS6A01G351500 chr6B 81.119 286 34 14 2489 2767 696155584 696155312 8.530000e-51 211.0
23 TraesCS6A01G351500 chr6B 81.405 242 36 3 1378 1619 57458102 57457870 3.990000e-44 189.0
24 TraesCS6A01G351500 chr1A 90.659 364 21 6 55 418 505484697 505484347 3.540000e-129 472.0
25 TraesCS6A01G351500 chr1A 94.444 72 4 0 2239 2310 357787029 357787100 8.890000e-21 111.0
26 TraesCS6A01G351500 chr1A 100.000 32 0 0 22 53 505484746 505484715 3.270000e-05 60.2
27 TraesCS6A01G351500 chr2A 80.859 559 68 26 2489 3034 12252429 12252961 1.310000e-108 403.0
28 TraesCS6A01G351500 chr2A 82.667 375 48 9 1388 1746 719566264 719566637 1.760000e-82 316.0
29 TraesCS6A01G351500 chr2A 78.558 513 74 27 793 1280 719685723 719686224 3.800000e-79 305.0
30 TraesCS6A01G351500 chr2A 81.593 364 54 9 1388 1740 719626437 719626798 3.830000e-74 289.0
31 TraesCS6A01G351500 chr2A 80.688 378 44 11 1393 1742 719686299 719686675 1.790000e-67 267.0
32 TraesCS6A01G351500 chr2A 81.595 163 29 1 2305 2467 648375930 648375769 1.900000e-27 134.0
33 TraesCS6A01G351500 chr2A 95.714 70 3 0 2241 2310 749872862 749872793 2.470000e-21 113.0
34 TraesCS6A01G351500 chr2A 95.652 69 3 0 2242 2310 17866225 17866157 8.890000e-21 111.0
35 TraesCS6A01G351500 chr2B 85.156 384 44 8 1370 1742 706568058 706568439 6.140000e-102 381.0
36 TraesCS6A01G351500 chr2B 83.198 369 39 12 1396 1742 706699460 706699827 1.760000e-82 316.0
37 TraesCS6A01G351500 chr2B 81.818 319 41 8 963 1280 706699069 706699371 5.020000e-63 252.0
38 TraesCS6A01G351500 chr2D 85.792 366 35 8 1393 1742 585520146 585520510 3.700000e-99 372.0
39 TraesCS6A01G351500 chr2D 83.333 372 38 9 1393 1742 585636714 585637083 3.770000e-84 322.0
40 TraesCS6A01G351500 chr2D 94.118 68 2 2 355 422 648359775 648359710 5.350000e-18 102.0
41 TraesCS6A01G351500 chr5D 76.896 567 77 34 2489 3029 227553550 227553012 3.860000e-69 272.0
42 TraesCS6A01G351500 chr5D 82.305 243 25 11 2489 2731 227552929 227553153 8.590000e-46 195.0
43 TraesCS6A01G351500 chr5D 82.099 162 26 3 2305 2464 455764851 455764691 5.280000e-28 135.0
44 TraesCS6A01G351500 chr4A 82.667 225 17 11 2489 2712 614545490 614545693 2.400000e-41 180.0
45 TraesCS6A01G351500 chr3B 86.232 138 12 2 2897 3034 772944541 772944671 3.150000e-30 143.0
46 TraesCS6A01G351500 chr3B 81.290 155 28 1 2307 2461 276788604 276788451 1.140000e-24 124.0
47 TraesCS6A01G351500 chr3B 92.958 71 3 2 353 423 131527921 131527989 5.350000e-18 102.0
48 TraesCS6A01G351500 chr4D 85.714 133 15 3 2489 2617 495299847 495299979 1.470000e-28 137.0
49 TraesCS6A01G351500 chr4D 85.075 134 17 3 2489 2619 438434090 438434223 1.900000e-27 134.0
50 TraesCS6A01G351500 chr7D 85.496 131 17 2 2489 2617 95104248 95104118 5.280000e-28 135.0
51 TraesCS6A01G351500 chr7D 94.521 73 2 2 2239 2310 40443829 40443900 8.890000e-21 111.0
52 TraesCS6A01G351500 chr7D 94.118 68 4 0 353 420 165151710 165151777 1.490000e-18 104.0
53 TraesCS6A01G351500 chr7D 88.750 80 3 6 344 422 103638371 103638445 3.220000e-15 93.5
54 TraesCS6A01G351500 chr7D 93.617 47 0 3 2198 2243 161460304 161460348 1.950000e-07 67.6
55 TraesCS6A01G351500 chr7A 81.529 157 28 1 2305 2461 112670416 112670571 8.830000e-26 128.0
56 TraesCS6A01G351500 chr7A 94.286 70 2 2 353 422 144647495 144647562 4.140000e-19 106.0
57 TraesCS6A01G351500 chr7A 75.743 202 32 15 94 294 420832535 420832350 5.390000e-13 86.1
58 TraesCS6A01G351500 chr1B 81.646 158 26 3 2304 2461 148118322 148118476 8.830000e-26 128.0
59 TraesCS6A01G351500 chr1B 95.714 70 1 2 2242 2310 107152415 107152347 8.890000e-21 111.0
60 TraesCS6A01G351500 chr7B 79.290 169 33 2 2305 2473 561551605 561551439 1.910000e-22 117.0
61 TraesCS6A01G351500 chr7B 82.353 102 15 3 2617 2717 721069416 721069317 5.390000e-13 86.1
62 TraesCS6A01G351500 chr3A 95.833 72 1 2 2240 2310 678422862 678422792 6.880000e-22 115.0
63 TraesCS6A01G351500 chr5A 95.714 70 3 0 2241 2310 523741599 523741530 2.470000e-21 113.0
64 TraesCS6A01G351500 chr5B 92.308 78 5 1 2232 2309 24110969 24111045 3.200000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G351500 chr6A 584506519 584509553 3034 True 1945.0 5605 97.183333 1 3035 3 chr6A.!!$R4 3034
1 TraesCS6A01G351500 chr6A 584529698 584531254 1556 True 1132.5 1149 91.836000 1367 3035 2 chr6A.!!$R5 1668
2 TraesCS6A01G351500 chr6A 584541546 584542416 870 True 1098.0 1098 90.000000 429 1279 1 chr6A.!!$R3 850
3 TraesCS6A01G351500 chr6D 436403865 436405697 1832 True 416.3 1123 90.753400 428 2490 5 chr6D.!!$R3 2062
4 TraesCS6A01G351500 chr6B 659607656 659608158 502 True 545.0 545 86.641000 2489 2995 1 chr6B.!!$R3 506
5 TraesCS6A01G351500 chr2A 12252429 12252961 532 False 403.0 403 80.859000 2489 3034 1 chr2A.!!$F1 545
6 TraesCS6A01G351500 chr2A 719685723 719686675 952 False 286.0 305 79.623000 793 1742 2 chr2A.!!$F4 949
7 TraesCS6A01G351500 chr2B 706699069 706699827 758 False 284.0 316 82.508000 963 1742 2 chr2B.!!$F2 779
8 TraesCS6A01G351500 chr5D 227553012 227553550 538 True 272.0 272 76.896000 2489 3029 1 chr5D.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 210 0.029433 GGCGGCGATGATTTTCCTTC 59.971 55.0 12.98 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2102 2408 0.24445 TAGTTTGTACGGGAGCCACG 59.756 55.0 0.0 0.0 37.36 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.029838 CACCACTCTTCCTGTATGGC 57.970 55.000 0.00 0.00 33.46 4.40
20 21 0.537188 ACCACTCTTCCTGTATGGCG 59.463 55.000 0.00 0.00 33.46 5.69
21 22 0.811616 CCACTCTTCCTGTATGGCGC 60.812 60.000 0.00 0.00 35.26 6.53
22 23 0.176680 CACTCTTCCTGTATGGCGCT 59.823 55.000 7.64 0.00 35.26 5.92
23 24 1.409064 CACTCTTCCTGTATGGCGCTA 59.591 52.381 7.64 0.00 35.26 4.26
24 25 2.108168 ACTCTTCCTGTATGGCGCTAA 58.892 47.619 7.64 0.00 35.26 3.09
25 26 2.101582 ACTCTTCCTGTATGGCGCTAAG 59.898 50.000 7.64 0.00 35.26 2.18
26 27 1.412710 TCTTCCTGTATGGCGCTAAGG 59.587 52.381 7.64 5.34 35.26 2.69
27 28 0.468226 TTCCTGTATGGCGCTAAGGG 59.532 55.000 7.64 2.76 35.26 3.95
28 29 1.598130 CCTGTATGGCGCTAAGGGC 60.598 63.158 7.64 0.00 40.84 5.19
30 31 0.882042 CTGTATGGCGCTAAGGGCAG 60.882 60.000 7.64 5.14 46.24 4.85
31 32 1.598130 GTATGGCGCTAAGGGCAGG 60.598 63.158 7.64 0.00 46.24 4.85
32 33 2.070039 TATGGCGCTAAGGGCAGGT 61.070 57.895 7.64 0.00 46.24 4.00
33 34 2.040009 TATGGCGCTAAGGGCAGGTC 62.040 60.000 7.64 0.00 46.24 3.85
34 35 4.858680 GGCGCTAAGGGCAGGTCC 62.859 72.222 7.64 0.00 43.41 4.46
53 54 4.767255 CCGCTGCGCTCCTTCCTT 62.767 66.667 18.00 0.00 0.00 3.36
54 55 2.743928 CGCTGCGCTCCTTCCTTT 60.744 61.111 9.88 0.00 0.00 3.11
55 56 2.744768 CGCTGCGCTCCTTCCTTTC 61.745 63.158 9.88 0.00 0.00 2.62
56 57 1.376553 GCTGCGCTCCTTCCTTTCT 60.377 57.895 9.73 0.00 0.00 2.52
57 58 1.365368 GCTGCGCTCCTTCCTTTCTC 61.365 60.000 9.73 0.00 0.00 2.87
58 59 0.248843 CTGCGCTCCTTCCTTTCTCT 59.751 55.000 9.73 0.00 0.00 3.10
59 60 0.247736 TGCGCTCCTTCCTTTCTCTC 59.752 55.000 9.73 0.00 0.00 3.20
60 61 0.534873 GCGCTCCTTCCTTTCTCTCT 59.465 55.000 0.00 0.00 0.00 3.10
61 62 1.738700 GCGCTCCTTCCTTTCTCTCTG 60.739 57.143 0.00 0.00 0.00 3.35
62 63 1.738700 CGCTCCTTCCTTTCTCTCTGC 60.739 57.143 0.00 0.00 0.00 4.26
63 64 1.554617 GCTCCTTCCTTTCTCTCTGCT 59.445 52.381 0.00 0.00 0.00 4.24
64 65 2.763448 GCTCCTTCCTTTCTCTCTGCTA 59.237 50.000 0.00 0.00 0.00 3.49
65 66 3.387699 GCTCCTTCCTTTCTCTCTGCTAT 59.612 47.826 0.00 0.00 0.00 2.97
66 67 4.501400 GCTCCTTCCTTTCTCTCTGCTATC 60.501 50.000 0.00 0.00 0.00 2.08
67 68 4.877773 TCCTTCCTTTCTCTCTGCTATCT 58.122 43.478 0.00 0.00 0.00 1.98
68 69 4.892934 TCCTTCCTTTCTCTCTGCTATCTC 59.107 45.833 0.00 0.00 0.00 2.75
69 70 4.895297 CCTTCCTTTCTCTCTGCTATCTCT 59.105 45.833 0.00 0.00 0.00 3.10
70 71 6.068010 CCTTCCTTTCTCTCTGCTATCTCTA 58.932 44.000 0.00 0.00 0.00 2.43
71 72 6.721208 CCTTCCTTTCTCTCTGCTATCTCTAT 59.279 42.308 0.00 0.00 0.00 1.98
72 73 7.094205 CCTTCCTTTCTCTCTGCTATCTCTATC 60.094 44.444 0.00 0.00 0.00 2.08
73 74 5.937540 TCCTTTCTCTCTGCTATCTCTATCG 59.062 44.000 0.00 0.00 0.00 2.92
74 75 5.391950 CCTTTCTCTCTGCTATCTCTATCGC 60.392 48.000 0.00 0.00 0.00 4.58
75 76 4.551702 TCTCTCTGCTATCTCTATCGCT 57.448 45.455 0.00 0.00 0.00 4.93
76 77 4.905429 TCTCTCTGCTATCTCTATCGCTT 58.095 43.478 0.00 0.00 0.00 4.68
77 78 4.935205 TCTCTCTGCTATCTCTATCGCTTC 59.065 45.833 0.00 0.00 0.00 3.86
78 79 3.682377 TCTCTGCTATCTCTATCGCTTCG 59.318 47.826 0.00 0.00 0.00 3.79
79 80 3.665190 TCTGCTATCTCTATCGCTTCGA 58.335 45.455 0.00 0.00 41.13 3.71
80 81 3.433957 TCTGCTATCTCTATCGCTTCGAC 59.566 47.826 0.00 0.00 39.18 4.20
81 82 2.157863 TGCTATCTCTATCGCTTCGACG 59.842 50.000 0.00 0.00 39.18 5.12
83 84 2.953640 ATCTCTATCGCTTCGACGAC 57.046 50.000 0.00 0.00 46.28 4.34
84 85 0.575859 TCTCTATCGCTTCGACGACG 59.424 55.000 0.00 0.00 46.28 5.12
85 86 0.383246 CTCTATCGCTTCGACGACGG 60.383 60.000 7.55 0.00 46.28 4.79
86 87 1.368969 CTATCGCTTCGACGACGGG 60.369 63.158 11.53 11.53 46.28 5.28
87 88 3.459378 TATCGCTTCGACGACGGGC 62.459 63.158 12.72 11.09 46.28 6.13
91 92 4.409218 CTTCGACGACGGGCGGAA 62.409 66.667 8.66 1.00 46.49 4.30
92 93 4.409218 TTCGACGACGGGCGGAAG 62.409 66.667 8.66 0.00 46.49 3.46
102 103 4.547367 GGCGGAAGGGACGGGATG 62.547 72.222 0.00 0.00 0.00 3.51
103 104 4.547367 GCGGAAGGGACGGGATGG 62.547 72.222 0.00 0.00 0.00 3.51
104 105 2.762459 CGGAAGGGACGGGATGGA 60.762 66.667 0.00 0.00 0.00 3.41
105 106 2.363975 CGGAAGGGACGGGATGGAA 61.364 63.158 0.00 0.00 0.00 3.53
106 107 1.527370 GGAAGGGACGGGATGGAAG 59.473 63.158 0.00 0.00 0.00 3.46
107 108 1.527370 GAAGGGACGGGATGGAAGG 59.473 63.158 0.00 0.00 0.00 3.46
108 109 2.610532 GAAGGGACGGGATGGAAGGC 62.611 65.000 0.00 0.00 0.00 4.35
109 110 3.407967 GGGACGGGATGGAAGGCA 61.408 66.667 0.00 0.00 0.00 4.75
110 111 2.757124 GGGACGGGATGGAAGGCAT 61.757 63.158 0.00 0.00 0.00 4.40
111 112 1.227973 GGACGGGATGGAAGGCATC 60.228 63.158 0.00 0.00 0.00 3.91
122 123 4.758982 AGGCATCCCCTTCCCTAG 57.241 61.111 0.00 0.00 43.06 3.02
123 124 2.036433 AGGCATCCCCTTCCCTAGA 58.964 57.895 0.00 0.00 43.06 2.43
124 125 0.575333 AGGCATCCCCTTCCCTAGAT 59.425 55.000 0.00 0.00 43.06 1.98
125 126 0.988063 GGCATCCCCTTCCCTAGATC 59.012 60.000 0.00 0.00 0.00 2.75
126 127 0.988063 GCATCCCCTTCCCTAGATCC 59.012 60.000 0.00 0.00 0.00 3.36
127 128 1.766499 GCATCCCCTTCCCTAGATCCA 60.766 57.143 0.00 0.00 0.00 3.41
128 129 2.264455 CATCCCCTTCCCTAGATCCAG 58.736 57.143 0.00 0.00 0.00 3.86
129 130 1.632769 TCCCCTTCCCTAGATCCAGA 58.367 55.000 0.00 0.00 0.00 3.86
130 131 1.220750 TCCCCTTCCCTAGATCCAGAC 59.779 57.143 0.00 0.00 0.00 3.51
131 132 1.333177 CCCTTCCCTAGATCCAGACG 58.667 60.000 0.00 0.00 0.00 4.18
132 133 1.133450 CCCTTCCCTAGATCCAGACGA 60.133 57.143 0.00 0.00 0.00 4.20
133 134 1.957877 CCTTCCCTAGATCCAGACGAC 59.042 57.143 0.00 0.00 0.00 4.34
134 135 2.656002 CTTCCCTAGATCCAGACGACA 58.344 52.381 0.00 0.00 0.00 4.35
135 136 2.820728 TCCCTAGATCCAGACGACAA 57.179 50.000 0.00 0.00 0.00 3.18
136 137 2.656002 TCCCTAGATCCAGACGACAAG 58.344 52.381 0.00 0.00 0.00 3.16
137 138 1.683917 CCCTAGATCCAGACGACAAGG 59.316 57.143 0.00 0.00 0.00 3.61
138 139 1.683917 CCTAGATCCAGACGACAAGGG 59.316 57.143 0.00 0.00 0.00 3.95
139 140 2.656002 CTAGATCCAGACGACAAGGGA 58.344 52.381 0.00 0.00 0.00 4.20
140 141 1.187087 AGATCCAGACGACAAGGGAC 58.813 55.000 0.00 0.00 31.04 4.46
141 142 0.895530 GATCCAGACGACAAGGGACA 59.104 55.000 0.00 0.00 31.04 4.02
142 143 1.482593 GATCCAGACGACAAGGGACAT 59.517 52.381 0.00 0.00 31.04 3.06
143 144 0.895530 TCCAGACGACAAGGGACATC 59.104 55.000 0.00 0.00 0.00 3.06
144 145 0.458543 CCAGACGACAAGGGACATCG 60.459 60.000 0.00 0.00 41.60 3.84
145 146 0.458543 CAGACGACAAGGGACATCGG 60.459 60.000 0.00 0.00 40.16 4.18
146 147 1.153628 GACGACAAGGGACATCGGG 60.154 63.158 0.00 0.00 40.16 5.14
147 148 1.885163 GACGACAAGGGACATCGGGT 61.885 60.000 0.00 0.00 40.16 5.28
148 149 1.153628 CGACAAGGGACATCGGGTC 60.154 63.158 0.20 0.20 46.20 4.46
162 163 2.738147 GGGTCACGAACTCACGATG 58.262 57.895 0.00 0.00 37.03 3.84
163 164 1.352156 GGGTCACGAACTCACGATGC 61.352 60.000 0.00 0.00 37.03 3.91
164 165 0.666274 GGTCACGAACTCACGATGCA 60.666 55.000 0.00 0.00 37.03 3.96
165 166 0.710567 GTCACGAACTCACGATGCAG 59.289 55.000 0.00 0.00 37.03 4.41
166 167 1.008875 TCACGAACTCACGATGCAGC 61.009 55.000 0.00 0.00 37.03 5.25
167 168 1.010935 CACGAACTCACGATGCAGCT 61.011 55.000 0.00 0.00 37.03 4.24
168 169 0.734253 ACGAACTCACGATGCAGCTC 60.734 55.000 0.00 0.00 37.03 4.09
169 170 0.733909 CGAACTCACGATGCAGCTCA 60.734 55.000 0.00 0.00 35.09 4.26
170 171 1.649664 GAACTCACGATGCAGCTCAT 58.350 50.000 0.00 0.00 38.32 2.90
171 172 1.326852 GAACTCACGATGCAGCTCATG 59.673 52.381 0.00 0.00 35.05 3.07
172 173 0.461516 ACTCACGATGCAGCTCATGG 60.462 55.000 0.00 5.34 35.05 3.66
173 174 1.153309 TCACGATGCAGCTCATGGG 60.153 57.895 0.00 0.00 35.50 4.00
174 175 1.153309 CACGATGCAGCTCATGGGA 60.153 57.895 0.00 0.00 35.50 4.37
175 176 0.534427 CACGATGCAGCTCATGGGAT 60.534 55.000 0.00 0.00 35.50 3.85
176 177 0.534427 ACGATGCAGCTCATGGGATG 60.534 55.000 6.43 6.43 35.50 3.51
177 178 1.235281 CGATGCAGCTCATGGGATGG 61.235 60.000 13.71 0.00 35.05 3.51
178 179 0.109913 GATGCAGCTCATGGGATGGA 59.890 55.000 13.71 10.89 35.05 3.41
179 180 0.778083 ATGCAGCTCATGGGATGGAT 59.222 50.000 12.54 12.54 33.26 3.41
180 181 0.179001 TGCAGCTCATGGGATGGATG 60.179 55.000 13.71 0.00 0.00 3.51
181 182 0.894184 GCAGCTCATGGGATGGATGG 60.894 60.000 13.71 0.00 0.00 3.51
182 183 0.894184 CAGCTCATGGGATGGATGGC 60.894 60.000 1.88 0.00 0.00 4.40
183 184 1.970114 GCTCATGGGATGGATGGCG 60.970 63.158 0.00 0.00 0.00 5.69
184 185 1.756665 CTCATGGGATGGATGGCGA 59.243 57.895 0.00 0.00 0.00 5.54
185 186 0.321387 CTCATGGGATGGATGGCGAG 60.321 60.000 0.00 0.00 0.00 5.03
186 187 1.970114 CATGGGATGGATGGCGAGC 60.970 63.158 0.00 0.00 0.00 5.03
187 188 2.454688 ATGGGATGGATGGCGAGCA 61.455 57.895 0.00 0.00 0.00 4.26
188 189 2.592861 GGGATGGATGGCGAGCAC 60.593 66.667 0.00 0.00 0.00 4.40
189 190 2.190313 GGATGGATGGCGAGCACA 59.810 61.111 0.00 0.00 0.00 4.57
190 191 1.890979 GGATGGATGGCGAGCACAG 60.891 63.158 0.00 0.00 0.00 3.66
191 192 1.890979 GATGGATGGCGAGCACAGG 60.891 63.158 0.00 0.00 0.00 4.00
192 193 4.783621 TGGATGGCGAGCACAGGC 62.784 66.667 0.00 0.00 41.61 4.85
202 203 3.204827 GCACAGGCGGCGATGATT 61.205 61.111 12.98 0.00 0.00 2.57
203 204 2.764314 GCACAGGCGGCGATGATTT 61.764 57.895 12.98 0.00 0.00 2.17
204 205 1.802636 CACAGGCGGCGATGATTTT 59.197 52.632 12.98 0.00 0.00 1.82
205 206 0.248215 CACAGGCGGCGATGATTTTC 60.248 55.000 12.98 0.00 0.00 2.29
206 207 1.356624 CAGGCGGCGATGATTTTCC 59.643 57.895 12.98 0.00 0.00 3.13
207 208 1.097547 CAGGCGGCGATGATTTTCCT 61.098 55.000 12.98 0.88 0.00 3.36
208 209 0.394352 AGGCGGCGATGATTTTCCTT 60.394 50.000 12.98 0.00 0.00 3.36
209 210 0.029433 GGCGGCGATGATTTTCCTTC 59.971 55.000 12.98 0.00 0.00 3.46
210 211 0.316196 GCGGCGATGATTTTCCTTCG 60.316 55.000 12.98 0.00 36.96 3.79
211 212 1.286501 CGGCGATGATTTTCCTTCGA 58.713 50.000 0.00 0.00 36.28 3.71
212 213 1.258982 CGGCGATGATTTTCCTTCGAG 59.741 52.381 0.00 0.00 36.28 4.04
213 214 2.550978 GGCGATGATTTTCCTTCGAGA 58.449 47.619 0.00 0.00 36.28 4.04
214 215 2.541762 GGCGATGATTTTCCTTCGAGAG 59.458 50.000 0.00 0.00 36.28 3.20
215 216 3.448686 GCGATGATTTTCCTTCGAGAGA 58.551 45.455 0.00 0.00 36.28 3.10
216 217 3.489047 GCGATGATTTTCCTTCGAGAGAG 59.511 47.826 0.00 0.00 43.69 3.20
217 218 4.734989 GCGATGATTTTCCTTCGAGAGAGA 60.735 45.833 0.00 0.00 43.69 3.10
218 219 4.737765 CGATGATTTTCCTTCGAGAGAGAC 59.262 45.833 0.00 0.00 43.69 3.36
219 220 4.098055 TGATTTTCCTTCGAGAGAGACG 57.902 45.455 0.00 0.00 43.69 4.18
220 221 3.119459 TGATTTTCCTTCGAGAGAGACGG 60.119 47.826 0.00 0.00 43.69 4.79
221 222 1.174783 TTTCCTTCGAGAGAGACGGG 58.825 55.000 0.00 0.00 43.69 5.28
222 223 0.327259 TTCCTTCGAGAGAGACGGGA 59.673 55.000 0.00 0.00 43.69 5.14
223 224 0.547075 TCCTTCGAGAGAGACGGGAT 59.453 55.000 0.00 0.00 43.69 3.85
224 225 0.948678 CCTTCGAGAGAGACGGGATC 59.051 60.000 0.00 0.00 43.69 3.36
225 226 0.584396 CTTCGAGAGAGACGGGATCG 59.416 60.000 0.00 0.00 43.69 3.69
226 227 0.814410 TTCGAGAGAGACGGGATCGG 60.814 60.000 0.00 0.00 43.69 4.18
227 228 2.255172 CGAGAGAGACGGGATCGGG 61.255 68.421 0.00 0.00 41.39 5.14
228 229 1.148723 GAGAGAGACGGGATCGGGA 59.851 63.158 0.00 0.00 41.39 5.14
229 230 0.887387 GAGAGAGACGGGATCGGGAG 60.887 65.000 0.00 0.00 41.39 4.30
230 231 2.519780 AGAGACGGGATCGGGAGC 60.520 66.667 0.00 0.00 41.39 4.70
231 232 3.967335 GAGACGGGATCGGGAGCG 61.967 72.222 0.00 0.00 41.39 5.03
232 233 4.501285 AGACGGGATCGGGAGCGA 62.501 66.667 0.00 0.00 41.39 4.93
233 234 3.967335 GACGGGATCGGGAGCGAG 61.967 72.222 0.00 0.00 41.39 5.03
248 249 3.093172 GAGGGGGCTTGGGGAGAG 61.093 72.222 0.00 0.00 0.00 3.20
249 250 3.626596 AGGGGGCTTGGGGAGAGA 61.627 66.667 0.00 0.00 0.00 3.10
250 251 2.368878 GGGGGCTTGGGGAGAGAT 60.369 66.667 0.00 0.00 0.00 2.75
251 252 2.761465 GGGGGCTTGGGGAGAGATG 61.761 68.421 0.00 0.00 0.00 2.90
252 253 2.761465 GGGGCTTGGGGAGAGATGG 61.761 68.421 0.00 0.00 0.00 3.51
253 254 2.761465 GGGCTTGGGGAGAGATGGG 61.761 68.421 0.00 0.00 0.00 4.00
254 255 2.761465 GGCTTGGGGAGAGATGGGG 61.761 68.421 0.00 0.00 0.00 4.96
255 256 2.761465 GCTTGGGGAGAGATGGGGG 61.761 68.421 0.00 0.00 0.00 5.40
256 257 2.696125 TTGGGGAGAGATGGGGGC 60.696 66.667 0.00 0.00 0.00 5.80
259 260 3.866582 GGGAGAGATGGGGGCGTG 61.867 72.222 0.00 0.00 0.00 5.34
260 261 4.554036 GGAGAGATGGGGGCGTGC 62.554 72.222 0.00 0.00 0.00 5.34
261 262 4.899239 GAGAGATGGGGGCGTGCG 62.899 72.222 0.00 0.00 0.00 5.34
272 273 4.627114 GCGTGCGACGTGTGTGTG 62.627 66.667 0.00 0.00 44.73 3.82
273 274 4.627114 CGTGCGACGTGTGTGTGC 62.627 66.667 0.00 0.00 36.74 4.57
274 275 4.627114 GTGCGACGTGTGTGTGCG 62.627 66.667 0.00 0.00 0.00 5.34
280 281 4.918060 CGTGTGTGTGCGCGTGTG 62.918 66.667 8.43 0.00 37.56 3.82
281 282 4.589700 GTGTGTGTGCGCGTGTGG 62.590 66.667 8.43 0.00 0.00 4.17
291 292 4.264638 GCGTGTGGCGGCAGTTTT 62.265 61.111 13.91 0.00 41.69 2.43
292 293 2.411290 CGTGTGGCGGCAGTTTTT 59.589 55.556 13.91 0.00 36.85 1.94
306 307 3.674906 TTTTTCGGCGATGGGTGG 58.325 55.556 11.76 0.00 0.00 4.61
307 308 1.228306 TTTTTCGGCGATGGGTGGT 60.228 52.632 11.76 0.00 0.00 4.16
308 309 1.519751 TTTTTCGGCGATGGGTGGTG 61.520 55.000 11.76 0.00 0.00 4.17
309 310 3.910914 TTTCGGCGATGGGTGGTGG 62.911 63.158 11.76 0.00 0.00 4.61
312 313 4.489771 GGCGATGGGTGGTGGGAG 62.490 72.222 0.00 0.00 0.00 4.30
314 315 4.838152 CGATGGGTGGTGGGAGCG 62.838 72.222 0.00 0.00 0.00 5.03
315 316 3.717294 GATGGGTGGTGGGAGCGT 61.717 66.667 0.00 0.00 0.00 5.07
316 317 3.976701 GATGGGTGGTGGGAGCGTG 62.977 68.421 0.00 0.00 0.00 5.34
329 330 2.331451 GCGTGCGCTGGTTTTTCT 59.669 55.556 9.73 0.00 38.26 2.52
330 331 1.299089 GCGTGCGCTGGTTTTTCTT 60.299 52.632 9.73 0.00 38.26 2.52
331 332 0.869880 GCGTGCGCTGGTTTTTCTTT 60.870 50.000 9.73 0.00 38.26 2.52
332 333 1.555477 CGTGCGCTGGTTTTTCTTTT 58.445 45.000 9.73 0.00 0.00 2.27
333 334 1.516864 CGTGCGCTGGTTTTTCTTTTC 59.483 47.619 9.73 0.00 0.00 2.29
334 335 2.535331 GTGCGCTGGTTTTTCTTTTCA 58.465 42.857 9.73 0.00 0.00 2.69
335 336 3.123050 GTGCGCTGGTTTTTCTTTTCAT 58.877 40.909 9.73 0.00 0.00 2.57
336 337 3.060339 GTGCGCTGGTTTTTCTTTTCATG 60.060 43.478 9.73 0.00 0.00 3.07
337 338 2.096762 GCGCTGGTTTTTCTTTTCATGC 60.097 45.455 0.00 0.00 0.00 4.06
338 339 2.153627 CGCTGGTTTTTCTTTTCATGCG 59.846 45.455 0.00 0.00 0.00 4.73
339 340 3.380142 GCTGGTTTTTCTTTTCATGCGA 58.620 40.909 0.00 0.00 0.00 5.10
340 341 3.989817 GCTGGTTTTTCTTTTCATGCGAT 59.010 39.130 0.00 0.00 0.00 4.58
341 342 4.143263 GCTGGTTTTTCTTTTCATGCGATG 60.143 41.667 0.00 0.00 0.00 3.84
342 343 5.193663 TGGTTTTTCTTTTCATGCGATGA 57.806 34.783 0.00 0.00 37.55 2.92
343 344 5.595885 TGGTTTTTCTTTTCATGCGATGAA 58.404 33.333 7.27 7.27 46.77 2.57
350 351 2.042686 TTCATGCGATGAAGGGGAAG 57.957 50.000 7.27 0.00 43.84 3.46
351 352 0.181114 TCATGCGATGAAGGGGAAGG 59.819 55.000 0.00 0.00 36.11 3.46
352 353 0.181114 CATGCGATGAAGGGGAAGGA 59.819 55.000 0.00 0.00 0.00 3.36
353 354 0.181350 ATGCGATGAAGGGGAAGGAC 59.819 55.000 0.00 0.00 0.00 3.85
354 355 1.521681 GCGATGAAGGGGAAGGACG 60.522 63.158 0.00 0.00 0.00 4.79
355 356 1.956629 GCGATGAAGGGGAAGGACGA 61.957 60.000 0.00 0.00 0.00 4.20
356 357 0.535335 CGATGAAGGGGAAGGACGAA 59.465 55.000 0.00 0.00 0.00 3.85
357 358 1.471676 CGATGAAGGGGAAGGACGAAG 60.472 57.143 0.00 0.00 0.00 3.79
358 359 0.912486 ATGAAGGGGAAGGACGAAGG 59.088 55.000 0.00 0.00 0.00 3.46
359 360 1.198759 TGAAGGGGAAGGACGAAGGG 61.199 60.000 0.00 0.00 0.00 3.95
360 361 0.908180 GAAGGGGAAGGACGAAGGGA 60.908 60.000 0.00 0.00 0.00 4.20
361 362 0.910088 AAGGGGAAGGACGAAGGGAG 60.910 60.000 0.00 0.00 0.00 4.30
362 363 2.368011 GGGGAAGGACGAAGGGAGG 61.368 68.421 0.00 0.00 0.00 4.30
363 364 1.612739 GGGAAGGACGAAGGGAGGT 60.613 63.158 0.00 0.00 0.00 3.85
364 365 1.597461 GGAAGGACGAAGGGAGGTG 59.403 63.158 0.00 0.00 0.00 4.00
365 366 1.192803 GGAAGGACGAAGGGAGGTGT 61.193 60.000 0.00 0.00 0.00 4.16
366 367 0.037232 GAAGGACGAAGGGAGGTGTG 60.037 60.000 0.00 0.00 0.00 3.82
367 368 1.481056 AAGGACGAAGGGAGGTGTGG 61.481 60.000 0.00 0.00 0.00 4.17
368 369 2.663196 GACGAAGGGAGGTGTGGG 59.337 66.667 0.00 0.00 0.00 4.61
369 370 2.928396 ACGAAGGGAGGTGTGGGG 60.928 66.667 0.00 0.00 0.00 4.96
370 371 2.606519 CGAAGGGAGGTGTGGGGA 60.607 66.667 0.00 0.00 0.00 4.81
371 372 1.995626 CGAAGGGAGGTGTGGGGAT 60.996 63.158 0.00 0.00 0.00 3.85
372 373 1.562672 CGAAGGGAGGTGTGGGGATT 61.563 60.000 0.00 0.00 0.00 3.01
373 374 0.034089 GAAGGGAGGTGTGGGGATTG 60.034 60.000 0.00 0.00 0.00 2.67
374 375 0.477597 AAGGGAGGTGTGGGGATTGA 60.478 55.000 0.00 0.00 0.00 2.57
375 376 0.477597 AGGGAGGTGTGGGGATTGAA 60.478 55.000 0.00 0.00 0.00 2.69
376 377 0.323451 GGGAGGTGTGGGGATTGAAC 60.323 60.000 0.00 0.00 0.00 3.18
377 378 0.676782 GGAGGTGTGGGGATTGAACG 60.677 60.000 0.00 0.00 0.00 3.95
378 379 0.323629 GAGGTGTGGGGATTGAACGA 59.676 55.000 0.00 0.00 0.00 3.85
379 380 0.324943 AGGTGTGGGGATTGAACGAG 59.675 55.000 0.00 0.00 0.00 4.18
380 381 0.676782 GGTGTGGGGATTGAACGAGG 60.677 60.000 0.00 0.00 0.00 4.63
381 382 0.036306 GTGTGGGGATTGAACGAGGT 59.964 55.000 0.00 0.00 0.00 3.85
382 383 0.768622 TGTGGGGATTGAACGAGGTT 59.231 50.000 0.00 0.00 0.00 3.50
383 384 1.165270 GTGGGGATTGAACGAGGTTG 58.835 55.000 0.00 0.00 0.00 3.77
384 385 1.060729 TGGGGATTGAACGAGGTTGA 58.939 50.000 0.00 0.00 0.00 3.18
385 386 1.422024 TGGGGATTGAACGAGGTTGAA 59.578 47.619 0.00 0.00 0.00 2.69
386 387 1.810755 GGGGATTGAACGAGGTTGAAC 59.189 52.381 0.00 0.00 0.00 3.18
387 388 1.810755 GGGATTGAACGAGGTTGAACC 59.189 52.381 6.16 6.16 38.99 3.62
388 389 2.500229 GGATTGAACGAGGTTGAACCA 58.500 47.619 17.83 0.00 41.95 3.67
389 390 3.081804 GGATTGAACGAGGTTGAACCAT 58.918 45.455 17.83 1.31 41.95 3.55
390 391 3.127030 GGATTGAACGAGGTTGAACCATC 59.873 47.826 17.83 8.44 41.95 3.51
391 392 2.920724 TGAACGAGGTTGAACCATCA 57.079 45.000 17.83 11.86 41.95 3.07
392 393 2.489971 TGAACGAGGTTGAACCATCAC 58.510 47.619 17.83 4.58 41.95 3.06
393 394 1.459592 GAACGAGGTTGAACCATCACG 59.540 52.381 17.83 17.06 41.95 4.35
394 395 0.677288 ACGAGGTTGAACCATCACGA 59.323 50.000 17.83 0.00 41.95 4.35
395 396 1.068474 CGAGGTTGAACCATCACGAC 58.932 55.000 17.83 0.00 41.95 4.34
396 397 1.068474 GAGGTTGAACCATCACGACG 58.932 55.000 17.83 0.00 41.95 5.12
397 398 0.391597 AGGTTGAACCATCACGACGT 59.608 50.000 17.83 0.00 41.95 4.34
398 399 1.202604 AGGTTGAACCATCACGACGTT 60.203 47.619 17.83 0.00 41.95 3.99
399 400 1.193874 GGTTGAACCATCACGACGTTC 59.806 52.381 9.98 0.00 38.42 3.95
400 401 1.133407 TTGAACCATCACGACGTTCG 58.867 50.000 0.00 0.00 46.93 3.95
401 402 0.311477 TGAACCATCACGACGTTCGA 59.689 50.000 13.06 0.00 43.74 3.71
402 403 1.068125 TGAACCATCACGACGTTCGAT 60.068 47.619 13.06 0.00 43.74 3.59
403 404 1.582502 GAACCATCACGACGTTCGATC 59.417 52.381 13.06 0.00 43.74 3.69
404 405 0.179145 ACCATCACGACGTTCGATCC 60.179 55.000 13.06 0.00 43.74 3.36
405 406 0.870307 CCATCACGACGTTCGATCCC 60.870 60.000 13.06 0.00 43.74 3.85
406 407 0.870307 CATCACGACGTTCGATCCCC 60.870 60.000 13.06 0.00 43.74 4.81
407 408 2.012902 ATCACGACGTTCGATCCCCC 62.013 60.000 13.06 0.00 43.74 5.40
408 409 2.362120 ACGACGTTCGATCCCCCT 60.362 61.111 13.06 0.00 43.74 4.79
409 410 1.980772 ACGACGTTCGATCCCCCTT 60.981 57.895 13.06 0.00 43.74 3.95
410 411 1.217244 CGACGTTCGATCCCCCTTT 59.783 57.895 0.00 0.00 43.74 3.11
411 412 0.457035 CGACGTTCGATCCCCCTTTA 59.543 55.000 0.00 0.00 43.74 1.85
412 413 1.135024 CGACGTTCGATCCCCCTTTAA 60.135 52.381 0.00 0.00 43.74 1.52
413 414 2.482490 CGACGTTCGATCCCCCTTTAAT 60.482 50.000 0.00 0.00 43.74 1.40
414 415 3.243501 CGACGTTCGATCCCCCTTTAATA 60.244 47.826 0.00 0.00 43.74 0.98
415 416 4.304939 GACGTTCGATCCCCCTTTAATAG 58.695 47.826 0.00 0.00 0.00 1.73
416 417 3.708121 ACGTTCGATCCCCCTTTAATAGT 59.292 43.478 0.00 0.00 0.00 2.12
417 418 4.895297 ACGTTCGATCCCCCTTTAATAGTA 59.105 41.667 0.00 0.00 0.00 1.82
418 419 5.010415 ACGTTCGATCCCCCTTTAATAGTAG 59.990 44.000 0.00 0.00 0.00 2.57
419 420 5.242393 CGTTCGATCCCCCTTTAATAGTAGA 59.758 44.000 0.00 0.00 0.00 2.59
420 421 6.569994 CGTTCGATCCCCCTTTAATAGTAGAG 60.570 46.154 0.00 0.00 0.00 2.43
421 422 6.210172 TCGATCCCCCTTTAATAGTAGAGA 57.790 41.667 0.00 0.00 0.00 3.10
422 423 6.617538 TCGATCCCCCTTTAATAGTAGAGAA 58.382 40.000 0.00 0.00 0.00 2.87
423 424 6.720288 TCGATCCCCCTTTAATAGTAGAGAAG 59.280 42.308 0.00 0.00 0.00 2.85
424 425 6.720288 CGATCCCCCTTTAATAGTAGAGAAGA 59.280 42.308 0.00 0.00 0.00 2.87
425 426 7.397761 CGATCCCCCTTTAATAGTAGAGAAGAT 59.602 40.741 0.00 0.00 0.00 2.40
426 427 9.106977 GATCCCCCTTTAATAGTAGAGAAGATT 57.893 37.037 0.00 0.00 0.00 2.40
427 428 8.871570 TCCCCCTTTAATAGTAGAGAAGATTT 57.128 34.615 0.00 0.00 0.00 2.17
428 429 8.714906 TCCCCCTTTAATAGTAGAGAAGATTTG 58.285 37.037 0.00 0.00 0.00 2.32
429 430 8.495260 CCCCCTTTAATAGTAGAGAAGATTTGT 58.505 37.037 0.00 0.00 0.00 2.83
430 431 9.907229 CCCCTTTAATAGTAGAGAAGATTTGTT 57.093 33.333 0.00 0.00 0.00 2.83
449 450 5.078411 TGTTGAAGATGCTCTAAGACTCC 57.922 43.478 0.00 0.00 0.00 3.85
450 451 4.081420 TGTTGAAGATGCTCTAAGACTCCC 60.081 45.833 0.00 0.00 0.00 4.30
476 477 4.097437 CAGATCCAACATGGGAATGAAGTG 59.903 45.833 0.00 0.00 41.12 3.16
569 585 1.965930 ACACGCATGCACCAATCGT 60.966 52.632 19.57 2.04 0.00 3.73
629 649 2.159338 ACCCTACGTACGCATGTTGTAG 60.159 50.000 16.72 7.48 36.43 2.74
632 652 4.357142 CCTACGTACGCATGTTGTAGATT 58.643 43.478 16.72 0.00 37.73 2.40
633 653 4.440103 CCTACGTACGCATGTTGTAGATTC 59.560 45.833 16.72 0.00 37.73 2.52
634 654 4.106029 ACGTACGCATGTTGTAGATTCT 57.894 40.909 16.72 0.00 0.00 2.40
635 655 5.239359 ACGTACGCATGTTGTAGATTCTA 57.761 39.130 16.72 0.00 0.00 2.10
640 660 7.963465 CGTACGCATGTTGTAGATTCTATCTAT 59.037 37.037 0.52 0.00 43.25 1.98
657 681 8.037382 TCTATCTATAGGTTGGTTATTCGTCG 57.963 38.462 0.00 0.00 0.00 5.12
658 682 6.645790 ATCTATAGGTTGGTTATTCGTCGT 57.354 37.500 0.00 0.00 0.00 4.34
659 683 7.750229 ATCTATAGGTTGGTTATTCGTCGTA 57.250 36.000 0.00 0.00 0.00 3.43
660 684 7.566760 TCTATAGGTTGGTTATTCGTCGTAA 57.433 36.000 0.00 0.00 0.00 3.18
661 685 8.169977 TCTATAGGTTGGTTATTCGTCGTAAT 57.830 34.615 0.00 0.00 0.00 1.89
662 686 9.283768 TCTATAGGTTGGTTATTCGTCGTAATA 57.716 33.333 0.00 0.00 0.00 0.98
675 699 6.510879 TCGTCGTAATAATCTGGCTATCAT 57.489 37.500 0.00 0.00 0.00 2.45
785 813 2.853003 GTGCTTTACGCTGCTAGTACTC 59.147 50.000 0.00 0.00 40.11 2.59
894 947 4.456253 CGACGCCGACAGCTACGT 62.456 66.667 10.67 0.00 42.27 3.57
961 1017 0.107654 ATTGCGGCTACCTTGGAGTC 60.108 55.000 0.00 0.00 0.00 3.36
1145 1211 4.116585 TCGCCGCTCTCCTCCTCT 62.117 66.667 0.00 0.00 0.00 3.69
1161 1230 1.913451 CTCTTCGTCGTCAGCCTCGT 61.913 60.000 0.00 0.00 0.00 4.18
1280 1352 1.602327 GCCGTTCCCGAGTAAGGACT 61.602 60.000 0.00 0.00 39.20 3.85
1281 1353 1.755179 CCGTTCCCGAGTAAGGACTA 58.245 55.000 0.00 0.00 35.45 2.59
1282 1354 2.094675 CCGTTCCCGAGTAAGGACTAA 58.905 52.381 0.00 0.00 35.45 2.24
1283 1355 2.098770 CCGTTCCCGAGTAAGGACTAAG 59.901 54.545 0.00 0.00 35.45 2.18
1285 1357 3.359950 GTTCCCGAGTAAGGACTAAGGA 58.640 50.000 0.00 0.00 36.26 3.36
1303 1375 1.307097 GAAGGACCTCTCATGCATGC 58.693 55.000 22.25 11.82 0.00 4.06
1304 1376 0.622136 AAGGACCTCTCATGCATGCA 59.378 50.000 25.04 25.04 0.00 3.96
1660 1784 1.686325 GAGGACTTGGCGGCCTGATA 61.686 60.000 21.46 0.00 30.70 2.15
1730 1854 2.009302 ATCCCCTTGCCCTTCTCCC 61.009 63.158 0.00 0.00 0.00 4.30
1742 1866 2.158593 CCCTTCTCCCTCGTCTAGATGA 60.159 54.545 13.98 13.98 0.00 2.92
1752 1876 5.011125 CCCTCGTCTAGATGATTGGTACATT 59.989 44.000 15.01 0.00 39.30 2.71
1753 1877 6.208797 CCCTCGTCTAGATGATTGGTACATTA 59.791 42.308 15.01 0.00 39.30 1.90
1754 1878 7.085116 CCTCGTCTAGATGATTGGTACATTAC 58.915 42.308 15.01 0.00 39.30 1.89
1781 1905 4.473520 CGGCGCCCTTGTCCATCT 62.474 66.667 23.46 0.00 0.00 2.90
1782 1906 2.514824 GGCGCCCTTGTCCATCTC 60.515 66.667 18.11 0.00 0.00 2.75
1783 1907 2.514824 GCGCCCTTGTCCATCTCC 60.515 66.667 0.00 0.00 0.00 3.71
1784 1908 2.202932 CGCCCTTGTCCATCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1862 2168 0.545787 ACCAACCTACCGATGGACCA 60.546 55.000 0.00 0.00 37.66 4.02
1864 2170 1.677820 CCAACCTACCGATGGACCAAC 60.678 57.143 0.00 0.00 36.27 3.77
1865 2171 1.278127 CAACCTACCGATGGACCAACT 59.722 52.381 0.00 0.00 0.00 3.16
1866 2172 2.498481 CAACCTACCGATGGACCAACTA 59.502 50.000 0.00 0.00 0.00 2.24
1867 2173 3.042059 ACCTACCGATGGACCAACTAT 57.958 47.619 0.00 0.00 0.00 2.12
1868 2174 4.188937 ACCTACCGATGGACCAACTATA 57.811 45.455 0.00 0.00 0.00 1.31
1923 2229 2.156917 TCTACTCCTGTGGTGTACGTG 58.843 52.381 0.00 0.00 31.55 4.49
1926 2232 0.388649 CTCCTGTGGTGTACGTGCTC 60.389 60.000 4.97 0.50 0.00 4.26
2101 2407 9.921637 AACTGCTTATATATCAGCTTACTTCTC 57.078 33.333 17.56 0.00 36.92 2.87
2102 2408 8.527810 ACTGCTTATATATCAGCTTACTTCTCC 58.472 37.037 17.56 0.00 36.92 3.71
2103 2409 7.539436 TGCTTATATATCAGCTTACTTCTCCG 58.461 38.462 17.56 0.00 36.92 4.63
2104 2410 7.176865 TGCTTATATATCAGCTTACTTCTCCGT 59.823 37.037 17.56 0.00 36.92 4.69
2105 2411 7.486551 GCTTATATATCAGCTTACTTCTCCGTG 59.513 40.741 11.00 0.00 32.87 4.94
2106 2412 2.969628 ATCAGCTTACTTCTCCGTGG 57.030 50.000 0.00 0.00 0.00 4.94
2107 2413 0.246635 TCAGCTTACTTCTCCGTGGC 59.753 55.000 0.00 0.00 0.00 5.01
2108 2414 0.247736 CAGCTTACTTCTCCGTGGCT 59.752 55.000 0.00 0.00 0.00 4.75
2109 2415 0.533032 AGCTTACTTCTCCGTGGCTC 59.467 55.000 0.00 0.00 0.00 4.70
2110 2416 0.460459 GCTTACTTCTCCGTGGCTCC 60.460 60.000 0.00 0.00 0.00 4.70
2111 2417 0.175989 CTTACTTCTCCGTGGCTCCC 59.824 60.000 0.00 0.00 0.00 4.30
2112 2418 1.601419 TTACTTCTCCGTGGCTCCCG 61.601 60.000 0.00 0.00 0.00 5.14
2113 2419 2.776370 TACTTCTCCGTGGCTCCCGT 62.776 60.000 0.00 0.00 0.00 5.28
2114 2420 2.036098 TTCTCCGTGGCTCCCGTA 59.964 61.111 0.00 0.00 0.00 4.02
2115 2421 2.280823 CTTCTCCGTGGCTCCCGTAC 62.281 65.000 0.00 0.00 0.00 3.67
2116 2422 3.066190 CTCCGTGGCTCCCGTACA 61.066 66.667 0.00 0.00 0.00 2.90
2117 2423 2.601067 TCCGTGGCTCCCGTACAA 60.601 61.111 0.00 0.00 0.00 2.41
2118 2424 2.162338 CTCCGTGGCTCCCGTACAAA 62.162 60.000 0.00 0.00 0.00 2.83
2119 2425 2.030958 CCGTGGCTCCCGTACAAAC 61.031 63.158 0.00 0.00 0.00 2.93
2120 2426 1.005394 CGTGGCTCCCGTACAAACT 60.005 57.895 0.00 0.00 0.00 2.66
2121 2427 0.244450 CGTGGCTCCCGTACAAACTA 59.756 55.000 0.00 0.00 0.00 2.24
2122 2428 1.718396 GTGGCTCCCGTACAAACTAC 58.282 55.000 0.00 0.00 0.00 2.73
2123 2429 1.001181 GTGGCTCCCGTACAAACTACA 59.999 52.381 0.00 0.00 0.00 2.74
2124 2430 1.693062 TGGCTCCCGTACAAACTACAA 59.307 47.619 0.00 0.00 0.00 2.41
2125 2431 2.104451 TGGCTCCCGTACAAACTACAAA 59.896 45.455 0.00 0.00 0.00 2.83
2126 2432 2.740447 GGCTCCCGTACAAACTACAAAG 59.260 50.000 0.00 0.00 0.00 2.77
2127 2433 3.555586 GGCTCCCGTACAAACTACAAAGA 60.556 47.826 0.00 0.00 0.00 2.52
2128 2434 4.251268 GCTCCCGTACAAACTACAAAGAT 58.749 43.478 0.00 0.00 0.00 2.40
2129 2435 4.092968 GCTCCCGTACAAACTACAAAGATG 59.907 45.833 0.00 0.00 0.00 2.90
2130 2436 5.217978 TCCCGTACAAACTACAAAGATGT 57.782 39.130 0.00 0.00 43.74 3.06
2131 2437 4.992319 TCCCGTACAAACTACAAAGATGTG 59.008 41.667 0.00 0.00 40.84 3.21
2132 2438 4.992319 CCCGTACAAACTACAAAGATGTGA 59.008 41.667 0.00 0.00 40.84 3.58
2133 2439 5.642063 CCCGTACAAACTACAAAGATGTGAT 59.358 40.000 0.00 0.00 40.84 3.06
2134 2440 6.148811 CCCGTACAAACTACAAAGATGTGATT 59.851 38.462 0.00 0.00 40.84 2.57
2135 2441 7.015289 CCGTACAAACTACAAAGATGTGATTG 58.985 38.462 0.00 0.00 40.84 2.67
2136 2442 7.015289 CGTACAAACTACAAAGATGTGATTGG 58.985 38.462 0.00 0.00 40.84 3.16
2137 2443 6.959639 ACAAACTACAAAGATGTGATTGGT 57.040 33.333 0.00 0.00 40.84 3.67
2138 2444 7.346751 ACAAACTACAAAGATGTGATTGGTT 57.653 32.000 0.00 0.00 40.84 3.67
2139 2445 8.458573 ACAAACTACAAAGATGTGATTGGTTA 57.541 30.769 0.00 0.00 40.84 2.85
2140 2446 8.908903 ACAAACTACAAAGATGTGATTGGTTAA 58.091 29.630 0.00 0.00 40.84 2.01
2141 2447 9.912634 CAAACTACAAAGATGTGATTGGTTAAT 57.087 29.630 0.00 0.00 40.84 1.40
2147 2453 9.912634 ACAAAGATGTGATTGGTTAATTAACTG 57.087 29.630 23.89 13.61 38.69 3.16
2148 2454 8.863049 CAAAGATGTGATTGGTTAATTAACTGC 58.137 33.333 23.89 11.72 36.47 4.40
2149 2455 7.944729 AGATGTGATTGGTTAATTAACTGCT 57.055 32.000 23.89 11.21 36.47 4.24
2150 2456 8.353423 AGATGTGATTGGTTAATTAACTGCTT 57.647 30.769 23.89 9.85 36.47 3.91
2151 2457 9.461312 AGATGTGATTGGTTAATTAACTGCTTA 57.539 29.630 23.89 8.95 36.47 3.09
2160 2466 9.280174 TGGTTAATTAACTGCTTATATACCAGC 57.720 33.333 23.89 4.90 36.47 4.85
2161 2467 9.503399 GGTTAATTAACTGCTTATATACCAGCT 57.497 33.333 23.89 0.97 36.47 4.24
2178 2484 0.246635 GCTTACTTCTCCGTGGCTCA 59.753 55.000 0.00 0.00 0.00 4.26
2199 2505 4.034279 TCACGTACAAACTACAAAGTTGCC 59.966 41.667 0.00 0.00 45.37 4.52
2204 2510 6.367969 CGTACAAACTACAAAGTTGCCTCTAT 59.632 38.462 0.00 0.00 45.37 1.98
2238 2544 4.623932 TGCAAGATGTTTAGAGAGGTGT 57.376 40.909 0.00 0.00 0.00 4.16
2239 2545 4.973168 TGCAAGATGTTTAGAGAGGTGTT 58.027 39.130 0.00 0.00 0.00 3.32
2245 2551 9.141400 CAAGATGTTTAGAGAGGTGTTTAGTAC 57.859 37.037 0.00 0.00 0.00 2.73
2257 2563 2.225091 TGTTTAGTACTCCCTCCGTCCA 60.225 50.000 0.00 0.00 0.00 4.02
2279 2585 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
2300 2606 8.930846 AATGGATGAAAAAGGATGTATCTAGG 57.069 34.615 0.00 0.00 0.00 3.02
2374 2685 5.349809 AGAAGTGCCTAATTAAGCGTCTAC 58.650 41.667 1.75 0.00 0.00 2.59
2375 2686 4.730949 AGTGCCTAATTAAGCGTCTACA 57.269 40.909 1.75 0.00 0.00 2.74
2378 2689 5.359009 AGTGCCTAATTAAGCGTCTACACTA 59.641 40.000 1.75 0.00 33.20 2.74
2496 2807 1.636003 ACTGAATCTTCCTTGGTCCCC 59.364 52.381 0.00 0.00 0.00 4.81
2570 2882 0.391228 GGGTTTGACCGCCACAAAAT 59.609 50.000 0.00 0.00 39.83 1.82
2587 2899 4.154195 ACAAAATCGCCTGATGAACAGTAC 59.846 41.667 0.00 0.00 44.40 2.73
2723 3039 2.706890 GAGGACCTCGTGGCAATAAAA 58.293 47.619 5.55 0.00 36.63 1.52
2724 3040 3.078837 GAGGACCTCGTGGCAATAAAAA 58.921 45.455 5.55 0.00 36.63 1.94
2796 3133 8.904099 ATTTTCTAGGGTCCAATATTCTTACG 57.096 34.615 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.740380 CGCCATACAGGAAGAGTGGTG 60.740 57.143 0.00 0.00 41.22 4.17
1 2 0.537188 CGCCATACAGGAAGAGTGGT 59.463 55.000 0.00 0.00 41.22 4.16
2 3 0.811616 GCGCCATACAGGAAGAGTGG 60.812 60.000 0.00 0.00 41.22 4.00
3 4 0.176680 AGCGCCATACAGGAAGAGTG 59.823 55.000 2.29 0.00 41.22 3.51
4 5 1.776662 TAGCGCCATACAGGAAGAGT 58.223 50.000 2.29 0.00 41.22 3.24
5 6 2.546795 CCTTAGCGCCATACAGGAAGAG 60.547 54.545 2.29 0.00 41.22 2.85
6 7 1.412710 CCTTAGCGCCATACAGGAAGA 59.587 52.381 2.29 0.00 41.22 2.87
7 8 1.541233 CCCTTAGCGCCATACAGGAAG 60.541 57.143 2.29 0.00 41.22 3.46
8 9 0.468226 CCCTTAGCGCCATACAGGAA 59.532 55.000 2.29 0.00 41.22 3.36
9 10 2.040009 GCCCTTAGCGCCATACAGGA 62.040 60.000 2.29 0.00 41.22 3.86
10 11 1.598130 GCCCTTAGCGCCATACAGG 60.598 63.158 2.29 2.01 41.84 4.00
11 12 4.049393 GCCCTTAGCGCCATACAG 57.951 61.111 2.29 0.00 0.00 2.74
39 40 0.248843 AGAGAAAGGAAGGAGCGCAG 59.751 55.000 11.47 0.00 0.00 5.18
40 41 0.247736 GAGAGAAAGGAAGGAGCGCA 59.752 55.000 11.47 0.00 0.00 6.09
41 42 0.534873 AGAGAGAAAGGAAGGAGCGC 59.465 55.000 0.00 0.00 0.00 5.92
42 43 1.738700 GCAGAGAGAAAGGAAGGAGCG 60.739 57.143 0.00 0.00 0.00 5.03
43 44 1.554617 AGCAGAGAGAAAGGAAGGAGC 59.445 52.381 0.00 0.00 0.00 4.70
44 45 4.895297 AGATAGCAGAGAGAAAGGAAGGAG 59.105 45.833 0.00 0.00 0.00 3.69
45 46 4.877773 AGATAGCAGAGAGAAAGGAAGGA 58.122 43.478 0.00 0.00 0.00 3.36
46 47 4.895297 AGAGATAGCAGAGAGAAAGGAAGG 59.105 45.833 0.00 0.00 0.00 3.46
47 48 7.361201 CGATAGAGATAGCAGAGAGAAAGGAAG 60.361 44.444 0.00 0.00 39.76 3.46
48 49 6.429692 CGATAGAGATAGCAGAGAGAAAGGAA 59.570 42.308 0.00 0.00 39.76 3.36
49 50 5.937540 CGATAGAGATAGCAGAGAGAAAGGA 59.062 44.000 0.00 0.00 39.76 3.36
50 51 5.391950 GCGATAGAGATAGCAGAGAGAAAGG 60.392 48.000 0.00 0.00 34.12 3.11
51 52 5.412594 AGCGATAGAGATAGCAGAGAGAAAG 59.587 44.000 0.00 0.00 36.24 2.62
52 53 5.312895 AGCGATAGAGATAGCAGAGAGAAA 58.687 41.667 0.00 0.00 36.24 2.52
53 54 4.905429 AGCGATAGAGATAGCAGAGAGAA 58.095 43.478 0.00 0.00 36.24 2.87
54 55 4.551702 AGCGATAGAGATAGCAGAGAGA 57.448 45.455 0.00 0.00 36.24 3.10
55 56 4.201714 CGAAGCGATAGAGATAGCAGAGAG 60.202 50.000 0.00 0.00 36.24 3.20
56 57 3.682377 CGAAGCGATAGAGATAGCAGAGA 59.318 47.826 0.00 0.00 36.24 3.10
57 58 3.682377 TCGAAGCGATAGAGATAGCAGAG 59.318 47.826 0.00 0.00 36.24 3.35
58 59 3.433957 GTCGAAGCGATAGAGATAGCAGA 59.566 47.826 0.00 0.00 38.42 4.26
59 60 3.723542 CGTCGAAGCGATAGAGATAGCAG 60.724 52.174 0.00 0.00 38.42 4.24
60 61 2.157863 CGTCGAAGCGATAGAGATAGCA 59.842 50.000 0.00 0.00 38.42 3.49
61 62 2.412429 TCGTCGAAGCGATAGAGATAGC 59.588 50.000 0.00 0.00 38.42 2.97
62 63 3.480665 CGTCGTCGAAGCGATAGAGATAG 60.481 52.174 0.00 0.00 43.07 2.08
63 64 2.407696 CGTCGTCGAAGCGATAGAGATA 59.592 50.000 0.00 0.00 43.07 1.98
64 65 1.192757 CGTCGTCGAAGCGATAGAGAT 59.807 52.381 0.00 0.00 43.07 2.75
65 66 0.575859 CGTCGTCGAAGCGATAGAGA 59.424 55.000 0.00 0.00 43.07 3.10
66 67 0.383246 CCGTCGTCGAAGCGATAGAG 60.383 60.000 14.27 2.84 43.07 2.43
67 68 1.640069 CCGTCGTCGAAGCGATAGA 59.360 57.895 14.27 0.00 43.07 1.98
68 69 1.368969 CCCGTCGTCGAAGCGATAG 60.369 63.158 14.27 6.77 43.07 2.08
69 70 2.711311 CCCGTCGTCGAAGCGATA 59.289 61.111 14.27 0.00 43.07 2.92
70 71 4.849329 GCCCGTCGTCGAAGCGAT 62.849 66.667 14.27 0.00 43.07 4.58
74 75 4.409218 TTCCGCCCGTCGTCGAAG 62.409 66.667 2.98 0.00 39.71 3.79
75 76 4.409218 CTTCCGCCCGTCGTCGAA 62.409 66.667 2.98 0.00 39.71 3.71
85 86 4.547367 CATCCCGTCCCTTCCGCC 62.547 72.222 0.00 0.00 0.00 6.13
86 87 4.547367 CCATCCCGTCCCTTCCGC 62.547 72.222 0.00 0.00 0.00 5.54
87 88 2.311688 CTTCCATCCCGTCCCTTCCG 62.312 65.000 0.00 0.00 0.00 4.30
88 89 1.527370 CTTCCATCCCGTCCCTTCC 59.473 63.158 0.00 0.00 0.00 3.46
89 90 1.527370 CCTTCCATCCCGTCCCTTC 59.473 63.158 0.00 0.00 0.00 3.46
90 91 2.680370 GCCTTCCATCCCGTCCCTT 61.680 63.158 0.00 0.00 0.00 3.95
91 92 3.090532 GCCTTCCATCCCGTCCCT 61.091 66.667 0.00 0.00 0.00 4.20
92 93 2.682582 GATGCCTTCCATCCCGTCCC 62.683 65.000 0.00 0.00 43.72 4.46
93 94 1.227973 GATGCCTTCCATCCCGTCC 60.228 63.158 0.00 0.00 43.72 4.79
94 95 4.464262 GATGCCTTCCATCCCGTC 57.536 61.111 0.00 0.00 43.72 4.79
103 104 0.767998 CTAGGGAAGGGGATGCCTTC 59.232 60.000 2.19 0.00 41.86 3.46
104 105 0.346932 TCTAGGGAAGGGGATGCCTT 59.653 55.000 2.19 0.00 41.86 4.35
105 106 0.575333 ATCTAGGGAAGGGGATGCCT 59.425 55.000 2.19 0.00 44.23 4.75
106 107 0.988063 GATCTAGGGAAGGGGATGCC 59.012 60.000 0.00 0.00 0.00 4.40
107 108 0.988063 GGATCTAGGGAAGGGGATGC 59.012 60.000 0.00 0.00 0.00 3.91
108 109 2.158097 TCTGGATCTAGGGAAGGGGATG 60.158 54.545 6.21 0.00 0.00 3.51
109 110 2.158081 GTCTGGATCTAGGGAAGGGGAT 60.158 54.545 6.21 0.00 0.00 3.85
110 111 1.220750 GTCTGGATCTAGGGAAGGGGA 59.779 57.143 6.21 0.00 0.00 4.81
111 112 1.723288 GTCTGGATCTAGGGAAGGGG 58.277 60.000 6.21 0.00 0.00 4.79
112 113 1.133450 TCGTCTGGATCTAGGGAAGGG 60.133 57.143 6.21 0.00 0.00 3.95
113 114 1.957877 GTCGTCTGGATCTAGGGAAGG 59.042 57.143 6.21 0.00 0.00 3.46
114 115 2.656002 TGTCGTCTGGATCTAGGGAAG 58.344 52.381 6.21 0.00 0.00 3.46
115 116 2.820728 TGTCGTCTGGATCTAGGGAA 57.179 50.000 6.21 0.00 0.00 3.97
116 117 2.656002 CTTGTCGTCTGGATCTAGGGA 58.344 52.381 6.21 1.71 0.00 4.20
117 118 1.683917 CCTTGTCGTCTGGATCTAGGG 59.316 57.143 6.21 0.00 0.00 3.53
118 119 1.683917 CCCTTGTCGTCTGGATCTAGG 59.316 57.143 6.21 0.00 0.00 3.02
119 120 2.359531 GTCCCTTGTCGTCTGGATCTAG 59.640 54.545 0.00 0.00 0.00 2.43
120 121 2.291346 TGTCCCTTGTCGTCTGGATCTA 60.291 50.000 0.00 0.00 0.00 1.98
121 122 1.187087 GTCCCTTGTCGTCTGGATCT 58.813 55.000 0.00 0.00 0.00 2.75
122 123 0.895530 TGTCCCTTGTCGTCTGGATC 59.104 55.000 0.00 0.00 0.00 3.36
123 124 1.482593 GATGTCCCTTGTCGTCTGGAT 59.517 52.381 0.00 0.00 0.00 3.41
124 125 0.895530 GATGTCCCTTGTCGTCTGGA 59.104 55.000 0.00 0.00 0.00 3.86
125 126 0.458543 CGATGTCCCTTGTCGTCTGG 60.459 60.000 0.00 0.00 0.00 3.86
126 127 0.458543 CCGATGTCCCTTGTCGTCTG 60.459 60.000 0.00 0.00 33.77 3.51
127 128 1.605058 CCCGATGTCCCTTGTCGTCT 61.605 60.000 0.00 0.00 33.77 4.18
128 129 1.153628 CCCGATGTCCCTTGTCGTC 60.154 63.158 0.00 0.00 33.77 4.20
129 130 1.885163 GACCCGATGTCCCTTGTCGT 61.885 60.000 0.00 0.00 38.09 4.34
130 131 1.153628 GACCCGATGTCCCTTGTCG 60.154 63.158 0.00 0.00 38.09 4.35
131 132 0.391263 GTGACCCGATGTCCCTTGTC 60.391 60.000 3.12 0.00 43.78 3.18
132 133 1.677552 GTGACCCGATGTCCCTTGT 59.322 57.895 3.12 0.00 43.78 3.16
133 134 1.447838 CGTGACCCGATGTCCCTTG 60.448 63.158 3.12 0.00 43.78 3.61
134 135 1.189524 TTCGTGACCCGATGTCCCTT 61.190 55.000 3.12 0.00 46.75 3.95
135 136 1.608336 TTCGTGACCCGATGTCCCT 60.608 57.895 3.12 0.00 46.75 4.20
136 137 1.447314 GTTCGTGACCCGATGTCCC 60.447 63.158 3.12 0.00 46.75 4.46
137 138 0.458025 GAGTTCGTGACCCGATGTCC 60.458 60.000 3.12 0.00 46.75 4.02
138 139 0.242825 TGAGTTCGTGACCCGATGTC 59.757 55.000 0.00 0.00 46.75 3.06
139 140 0.038526 GTGAGTTCGTGACCCGATGT 60.039 55.000 0.00 0.00 46.75 3.06
140 141 1.071019 CGTGAGTTCGTGACCCGATG 61.071 60.000 0.00 0.00 46.75 3.84
141 142 1.211969 CGTGAGTTCGTGACCCGAT 59.788 57.895 0.00 0.00 46.75 4.18
142 143 1.239296 ATCGTGAGTTCGTGACCCGA 61.239 55.000 0.00 0.00 45.66 5.14
143 144 1.071019 CATCGTGAGTTCGTGACCCG 61.071 60.000 0.00 0.00 38.13 5.28
144 145 1.352156 GCATCGTGAGTTCGTGACCC 61.352 60.000 0.00 0.00 0.00 4.46
145 146 0.666274 TGCATCGTGAGTTCGTGACC 60.666 55.000 0.00 0.00 0.00 4.02
146 147 0.710567 CTGCATCGTGAGTTCGTGAC 59.289 55.000 0.00 0.00 0.00 3.67
147 148 1.008875 GCTGCATCGTGAGTTCGTGA 61.009 55.000 0.00 0.00 0.00 4.35
148 149 1.010935 AGCTGCATCGTGAGTTCGTG 61.011 55.000 1.02 0.00 0.00 4.35
149 150 0.734253 GAGCTGCATCGTGAGTTCGT 60.734 55.000 1.02 0.00 0.00 3.85
150 151 0.733909 TGAGCTGCATCGTGAGTTCG 60.734 55.000 1.02 0.00 0.00 3.95
151 152 1.326852 CATGAGCTGCATCGTGAGTTC 59.673 52.381 1.02 0.00 38.28 3.01
152 153 1.366679 CATGAGCTGCATCGTGAGTT 58.633 50.000 1.02 0.00 38.28 3.01
153 154 0.461516 CCATGAGCTGCATCGTGAGT 60.462 55.000 17.27 0.00 38.28 3.41
154 155 1.158484 CCCATGAGCTGCATCGTGAG 61.158 60.000 17.27 5.93 38.28 3.51
155 156 1.153309 CCCATGAGCTGCATCGTGA 60.153 57.895 17.27 0.00 38.28 4.35
156 157 0.534427 ATCCCATGAGCTGCATCGTG 60.534 55.000 1.02 8.18 34.15 4.35
157 158 0.534427 CATCCCATGAGCTGCATCGT 60.534 55.000 1.02 0.00 34.15 3.73
158 159 1.235281 CCATCCCATGAGCTGCATCG 61.235 60.000 1.02 0.00 34.15 3.84
159 160 0.109913 TCCATCCCATGAGCTGCATC 59.890 55.000 1.02 0.00 34.15 3.91
160 161 0.778083 ATCCATCCCATGAGCTGCAT 59.222 50.000 1.02 0.00 37.85 3.96
161 162 0.179001 CATCCATCCCATGAGCTGCA 60.179 55.000 1.02 0.00 0.00 4.41
162 163 0.894184 CCATCCATCCCATGAGCTGC 60.894 60.000 0.00 0.00 0.00 5.25
163 164 0.894184 GCCATCCATCCCATGAGCTG 60.894 60.000 0.00 0.00 0.00 4.24
164 165 1.459369 GCCATCCATCCCATGAGCT 59.541 57.895 0.00 0.00 0.00 4.09
165 166 1.970114 CGCCATCCATCCCATGAGC 60.970 63.158 0.00 0.00 0.00 4.26
166 167 0.321387 CTCGCCATCCATCCCATGAG 60.321 60.000 0.00 0.00 0.00 2.90
167 168 1.756665 CTCGCCATCCATCCCATGA 59.243 57.895 0.00 0.00 0.00 3.07
168 169 1.970114 GCTCGCCATCCATCCCATG 60.970 63.158 0.00 0.00 0.00 3.66
169 170 2.433446 GCTCGCCATCCATCCCAT 59.567 61.111 0.00 0.00 0.00 4.00
170 171 3.089217 TGCTCGCCATCCATCCCA 61.089 61.111 0.00 0.00 0.00 4.37
171 172 2.592861 GTGCTCGCCATCCATCCC 60.593 66.667 0.00 0.00 0.00 3.85
172 173 1.890979 CTGTGCTCGCCATCCATCC 60.891 63.158 0.00 0.00 0.00 3.51
173 174 1.890979 CCTGTGCTCGCCATCCATC 60.891 63.158 0.00 0.00 0.00 3.51
174 175 2.191375 CCTGTGCTCGCCATCCAT 59.809 61.111 0.00 0.00 0.00 3.41
175 176 4.783621 GCCTGTGCTCGCCATCCA 62.784 66.667 0.00 0.00 33.53 3.41
183 184 4.819761 TCATCGCCGCCTGTGCTC 62.820 66.667 0.00 0.00 34.43 4.26
184 185 3.687321 AATCATCGCCGCCTGTGCT 62.687 57.895 0.00 0.00 34.43 4.40
185 186 2.270297 AAAATCATCGCCGCCTGTGC 62.270 55.000 0.00 0.00 0.00 4.57
186 187 0.248215 GAAAATCATCGCCGCCTGTG 60.248 55.000 0.00 0.00 0.00 3.66
187 188 1.376609 GGAAAATCATCGCCGCCTGT 61.377 55.000 0.00 0.00 0.00 4.00
188 189 1.097547 AGGAAAATCATCGCCGCCTG 61.098 55.000 0.00 0.00 0.00 4.85
189 190 0.394352 AAGGAAAATCATCGCCGCCT 60.394 50.000 0.00 0.00 0.00 5.52
190 191 0.029433 GAAGGAAAATCATCGCCGCC 59.971 55.000 0.00 0.00 0.00 6.13
191 192 0.316196 CGAAGGAAAATCATCGCCGC 60.316 55.000 0.00 0.00 0.00 6.53
192 193 1.258982 CTCGAAGGAAAATCATCGCCG 59.741 52.381 0.00 0.00 35.39 6.46
193 194 2.541762 CTCTCGAAGGAAAATCATCGCC 59.458 50.000 0.00 0.00 35.39 5.54
194 195 3.448686 TCTCTCGAAGGAAAATCATCGC 58.551 45.455 0.00 0.00 35.39 4.58
195 196 4.737765 GTCTCTCTCGAAGGAAAATCATCG 59.262 45.833 0.00 0.00 36.67 3.84
196 197 4.737765 CGTCTCTCTCGAAGGAAAATCATC 59.262 45.833 0.00 0.00 0.00 2.92
197 198 4.440802 CCGTCTCTCTCGAAGGAAAATCAT 60.441 45.833 0.00 0.00 34.94 2.45
198 199 3.119459 CCGTCTCTCTCGAAGGAAAATCA 60.119 47.826 0.00 0.00 34.94 2.57
199 200 3.440228 CCGTCTCTCTCGAAGGAAAATC 58.560 50.000 0.00 0.00 34.94 2.17
200 201 2.166664 CCCGTCTCTCTCGAAGGAAAAT 59.833 50.000 0.00 0.00 34.94 1.82
201 202 1.544691 CCCGTCTCTCTCGAAGGAAAA 59.455 52.381 0.00 0.00 34.94 2.29
202 203 1.174783 CCCGTCTCTCTCGAAGGAAA 58.825 55.000 0.00 0.00 34.94 3.13
203 204 0.327259 TCCCGTCTCTCTCGAAGGAA 59.673 55.000 0.00 0.00 34.94 3.36
204 205 0.547075 ATCCCGTCTCTCTCGAAGGA 59.453 55.000 0.00 0.00 34.94 3.36
205 206 0.948678 GATCCCGTCTCTCTCGAAGG 59.051 60.000 0.00 0.00 33.10 3.46
206 207 0.584396 CGATCCCGTCTCTCTCGAAG 59.416 60.000 0.00 0.00 0.00 3.79
207 208 0.814410 CCGATCCCGTCTCTCTCGAA 60.814 60.000 0.00 0.00 0.00 3.71
208 209 1.227586 CCGATCCCGTCTCTCTCGA 60.228 63.158 0.00 0.00 0.00 4.04
209 210 2.255172 CCCGATCCCGTCTCTCTCG 61.255 68.421 0.00 0.00 0.00 4.04
210 211 0.887387 CTCCCGATCCCGTCTCTCTC 60.887 65.000 0.00 0.00 0.00 3.20
211 212 1.149627 CTCCCGATCCCGTCTCTCT 59.850 63.158 0.00 0.00 0.00 3.10
212 213 2.557372 GCTCCCGATCCCGTCTCTC 61.557 68.421 0.00 0.00 0.00 3.20
213 214 2.519780 GCTCCCGATCCCGTCTCT 60.520 66.667 0.00 0.00 0.00 3.10
214 215 3.967335 CGCTCCCGATCCCGTCTC 61.967 72.222 0.00 0.00 36.29 3.36
215 216 4.501285 TCGCTCCCGATCCCGTCT 62.501 66.667 0.00 0.00 38.82 4.18
216 217 3.967335 CTCGCTCCCGATCCCGTC 61.967 72.222 0.00 0.00 43.47 4.79
231 232 2.923852 ATCTCTCCCCAAGCCCCCTC 62.924 65.000 0.00 0.00 0.00 4.30
232 233 2.978674 ATCTCTCCCCAAGCCCCCT 61.979 63.158 0.00 0.00 0.00 4.79
233 234 2.368878 ATCTCTCCCCAAGCCCCC 60.369 66.667 0.00 0.00 0.00 5.40
234 235 2.761465 CCATCTCTCCCCAAGCCCC 61.761 68.421 0.00 0.00 0.00 5.80
235 236 2.761465 CCCATCTCTCCCCAAGCCC 61.761 68.421 0.00 0.00 0.00 5.19
236 237 2.761465 CCCCATCTCTCCCCAAGCC 61.761 68.421 0.00 0.00 0.00 4.35
237 238 2.761465 CCCCCATCTCTCCCCAAGC 61.761 68.421 0.00 0.00 0.00 4.01
238 239 2.761465 GCCCCCATCTCTCCCCAAG 61.761 68.421 0.00 0.00 0.00 3.61
239 240 2.696125 GCCCCCATCTCTCCCCAA 60.696 66.667 0.00 0.00 0.00 4.12
242 243 3.866582 CACGCCCCCATCTCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
243 244 4.554036 GCACGCCCCCATCTCTCC 62.554 72.222 0.00 0.00 0.00 3.71
244 245 4.899239 CGCACGCCCCCATCTCTC 62.899 72.222 0.00 0.00 0.00 3.20
257 258 4.627114 CGCACACACACGTCGCAC 62.627 66.667 0.00 0.00 0.00 5.34
261 262 4.627114 CACGCGCACACACACGTC 62.627 66.667 5.73 0.00 36.45 4.34
263 264 4.918060 CACACGCGCACACACACG 62.918 66.667 5.73 0.00 0.00 4.49
264 265 4.589700 CCACACGCGCACACACAC 62.590 66.667 5.73 0.00 0.00 3.82
274 275 3.766496 AAAAACTGCCGCCACACGC 62.766 57.895 0.00 0.00 41.76 5.34
275 276 2.411290 AAAAACTGCCGCCACACG 59.589 55.556 0.00 0.00 43.15 4.49
289 290 1.228306 ACCACCCATCGCCGAAAAA 60.228 52.632 0.00 0.00 0.00 1.94
290 291 1.969064 CACCACCCATCGCCGAAAA 60.969 57.895 0.00 0.00 0.00 2.29
291 292 2.359354 CACCACCCATCGCCGAAA 60.359 61.111 0.00 0.00 0.00 3.46
292 293 4.402528 CCACCACCCATCGCCGAA 62.403 66.667 0.00 0.00 0.00 4.30
295 296 4.489771 CTCCCACCACCCATCGCC 62.490 72.222 0.00 0.00 0.00 5.54
297 298 4.838152 CGCTCCCACCACCCATCG 62.838 72.222 0.00 0.00 0.00 3.84
298 299 3.717294 ACGCTCCCACCACCCATC 61.717 66.667 0.00 0.00 0.00 3.51
299 300 4.033776 CACGCTCCCACCACCCAT 62.034 66.667 0.00 0.00 0.00 4.00
312 313 0.869880 AAAGAAAAACCAGCGCACGC 60.870 50.000 11.47 6.99 42.33 5.34
313 314 1.516864 GAAAAGAAAAACCAGCGCACG 59.483 47.619 11.47 0.00 0.00 5.34
314 315 2.535331 TGAAAAGAAAAACCAGCGCAC 58.465 42.857 11.47 0.00 0.00 5.34
315 316 2.949451 TGAAAAGAAAAACCAGCGCA 57.051 40.000 11.47 0.00 0.00 6.09
316 317 2.096762 GCATGAAAAGAAAAACCAGCGC 60.097 45.455 0.00 0.00 0.00 5.92
317 318 2.153627 CGCATGAAAAGAAAAACCAGCG 59.846 45.455 0.00 0.00 35.42 5.18
318 319 3.380142 TCGCATGAAAAGAAAAACCAGC 58.620 40.909 0.00 0.00 0.00 4.85
319 320 5.221880 TCATCGCATGAAAAGAAAAACCAG 58.778 37.500 0.00 0.00 36.11 4.00
320 321 5.193663 TCATCGCATGAAAAGAAAAACCA 57.806 34.783 0.00 0.00 36.11 3.67
331 332 1.408683 CCTTCCCCTTCATCGCATGAA 60.409 52.381 0.00 10.01 46.30 2.57
332 333 0.181114 CCTTCCCCTTCATCGCATGA 59.819 55.000 0.00 0.00 37.55 3.07
333 334 0.181114 TCCTTCCCCTTCATCGCATG 59.819 55.000 0.00 0.00 0.00 4.06
334 335 0.181350 GTCCTTCCCCTTCATCGCAT 59.819 55.000 0.00 0.00 0.00 4.73
335 336 1.602237 GTCCTTCCCCTTCATCGCA 59.398 57.895 0.00 0.00 0.00 5.10
336 337 1.521681 CGTCCTTCCCCTTCATCGC 60.522 63.158 0.00 0.00 0.00 4.58
337 338 0.535335 TTCGTCCTTCCCCTTCATCG 59.465 55.000 0.00 0.00 0.00 3.84
338 339 1.134371 CCTTCGTCCTTCCCCTTCATC 60.134 57.143 0.00 0.00 0.00 2.92
339 340 0.912486 CCTTCGTCCTTCCCCTTCAT 59.088 55.000 0.00 0.00 0.00 2.57
340 341 1.198759 CCCTTCGTCCTTCCCCTTCA 61.199 60.000 0.00 0.00 0.00 3.02
341 342 0.908180 TCCCTTCGTCCTTCCCCTTC 60.908 60.000 0.00 0.00 0.00 3.46
342 343 0.910088 CTCCCTTCGTCCTTCCCCTT 60.910 60.000 0.00 0.00 0.00 3.95
343 344 1.306226 CTCCCTTCGTCCTTCCCCT 60.306 63.158 0.00 0.00 0.00 4.79
344 345 2.368011 CCTCCCTTCGTCCTTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
345 346 1.612739 ACCTCCCTTCGTCCTTCCC 60.613 63.158 0.00 0.00 0.00 3.97
346 347 1.192803 ACACCTCCCTTCGTCCTTCC 61.193 60.000 0.00 0.00 0.00 3.46
347 348 0.037232 CACACCTCCCTTCGTCCTTC 60.037 60.000 0.00 0.00 0.00 3.46
348 349 1.481056 CCACACCTCCCTTCGTCCTT 61.481 60.000 0.00 0.00 0.00 3.36
349 350 1.913762 CCACACCTCCCTTCGTCCT 60.914 63.158 0.00 0.00 0.00 3.85
350 351 2.663196 CCACACCTCCCTTCGTCC 59.337 66.667 0.00 0.00 0.00 4.79
351 352 2.663196 CCCACACCTCCCTTCGTC 59.337 66.667 0.00 0.00 0.00 4.20
352 353 2.765705 ATCCCCACACCTCCCTTCGT 62.766 60.000 0.00 0.00 0.00 3.85
353 354 1.562672 AATCCCCACACCTCCCTTCG 61.563 60.000 0.00 0.00 0.00 3.79
354 355 0.034089 CAATCCCCACACCTCCCTTC 60.034 60.000 0.00 0.00 0.00 3.46
355 356 0.477597 TCAATCCCCACACCTCCCTT 60.478 55.000 0.00 0.00 0.00 3.95
356 357 0.477597 TTCAATCCCCACACCTCCCT 60.478 55.000 0.00 0.00 0.00 4.20
357 358 0.323451 GTTCAATCCCCACACCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
358 359 0.676782 CGTTCAATCCCCACACCTCC 60.677 60.000 0.00 0.00 0.00 4.30
359 360 0.323629 TCGTTCAATCCCCACACCTC 59.676 55.000 0.00 0.00 0.00 3.85
360 361 0.324943 CTCGTTCAATCCCCACACCT 59.675 55.000 0.00 0.00 0.00 4.00
361 362 0.676782 CCTCGTTCAATCCCCACACC 60.677 60.000 0.00 0.00 0.00 4.16
362 363 0.036306 ACCTCGTTCAATCCCCACAC 59.964 55.000 0.00 0.00 0.00 3.82
363 364 0.768622 AACCTCGTTCAATCCCCACA 59.231 50.000 0.00 0.00 0.00 4.17
364 365 1.165270 CAACCTCGTTCAATCCCCAC 58.835 55.000 0.00 0.00 0.00 4.61
365 366 1.060729 TCAACCTCGTTCAATCCCCA 58.939 50.000 0.00 0.00 0.00 4.96
366 367 1.810755 GTTCAACCTCGTTCAATCCCC 59.189 52.381 0.00 0.00 0.00 4.81
367 368 1.810755 GGTTCAACCTCGTTCAATCCC 59.189 52.381 0.00 0.00 34.73 3.85
368 369 2.500229 TGGTTCAACCTCGTTCAATCC 58.500 47.619 8.40 0.00 39.58 3.01
369 370 3.751175 TGATGGTTCAACCTCGTTCAATC 59.249 43.478 8.40 0.96 39.58 2.67
370 371 3.502211 GTGATGGTTCAACCTCGTTCAAT 59.498 43.478 8.40 0.00 39.58 2.57
371 372 2.875933 GTGATGGTTCAACCTCGTTCAA 59.124 45.455 8.40 0.00 39.58 2.69
372 373 2.489971 GTGATGGTTCAACCTCGTTCA 58.510 47.619 8.40 3.26 39.58 3.18
373 374 1.459592 CGTGATGGTTCAACCTCGTTC 59.540 52.381 8.40 0.59 39.58 3.95
374 375 1.069513 TCGTGATGGTTCAACCTCGTT 59.930 47.619 8.40 0.00 39.58 3.85
375 376 0.677288 TCGTGATGGTTCAACCTCGT 59.323 50.000 8.40 0.00 39.58 4.18
376 377 1.068474 GTCGTGATGGTTCAACCTCG 58.932 55.000 8.40 7.77 39.58 4.63
377 378 1.068474 CGTCGTGATGGTTCAACCTC 58.932 55.000 8.40 3.69 39.58 3.85
378 379 0.391597 ACGTCGTGATGGTTCAACCT 59.608 50.000 8.40 0.00 39.58 3.50
379 380 1.193874 GAACGTCGTGATGGTTCAACC 59.806 52.381 0.00 0.00 39.76 3.77
380 381 1.136721 CGAACGTCGTGATGGTTCAAC 60.137 52.381 0.00 0.00 39.93 3.18
381 382 1.133407 CGAACGTCGTGATGGTTCAA 58.867 50.000 0.00 0.00 39.93 2.69
382 383 0.311477 TCGAACGTCGTGATGGTTCA 59.689 50.000 0.00 0.00 41.35 3.18
383 384 1.582502 GATCGAACGTCGTGATGGTTC 59.417 52.381 0.00 6.67 41.35 3.62
384 385 1.625616 GATCGAACGTCGTGATGGTT 58.374 50.000 0.00 0.00 41.35 3.67
385 386 0.179145 GGATCGAACGTCGTGATGGT 60.179 55.000 0.00 0.00 41.35 3.55
386 387 0.870307 GGGATCGAACGTCGTGATGG 60.870 60.000 0.00 0.00 41.35 3.51
387 388 0.870307 GGGGATCGAACGTCGTGATG 60.870 60.000 0.00 0.00 41.35 3.07
388 389 1.436336 GGGGATCGAACGTCGTGAT 59.564 57.895 0.00 0.00 41.35 3.06
389 390 2.703798 GGGGGATCGAACGTCGTGA 61.704 63.158 0.00 0.00 41.35 4.35
390 391 2.202703 GGGGGATCGAACGTCGTG 60.203 66.667 0.00 0.00 41.35 4.35
391 392 1.538687 AAAGGGGGATCGAACGTCGT 61.539 55.000 0.00 0.00 41.35 4.34
392 393 0.457035 TAAAGGGGGATCGAACGTCG 59.543 55.000 0.00 0.00 42.10 5.12
393 394 2.678471 TTAAAGGGGGATCGAACGTC 57.322 50.000 0.00 0.00 0.00 4.34
394 395 3.708121 ACTATTAAAGGGGGATCGAACGT 59.292 43.478 0.00 0.00 0.00 3.99
395 396 4.332428 ACTATTAAAGGGGGATCGAACG 57.668 45.455 0.00 0.00 0.00 3.95
396 397 6.492772 TCTCTACTATTAAAGGGGGATCGAAC 59.507 42.308 0.00 0.00 0.00 3.95
397 398 6.617538 TCTCTACTATTAAAGGGGGATCGAA 58.382 40.000 0.00 0.00 0.00 3.71
398 399 6.210172 TCTCTACTATTAAAGGGGGATCGA 57.790 41.667 0.00 0.00 0.00 3.59
399 400 6.720288 TCTTCTCTACTATTAAAGGGGGATCG 59.280 42.308 0.00 0.00 0.00 3.69
400 401 8.673456 ATCTTCTCTACTATTAAAGGGGGATC 57.327 38.462 0.00 0.00 0.00 3.36
401 402 9.467030 AAATCTTCTCTACTATTAAAGGGGGAT 57.533 33.333 0.00 0.00 0.00 3.85
402 403 8.714906 CAAATCTTCTCTACTATTAAAGGGGGA 58.285 37.037 0.00 0.00 0.00 4.81
403 404 8.495260 ACAAATCTTCTCTACTATTAAAGGGGG 58.505 37.037 0.00 0.00 0.00 5.40
404 405 9.907229 AACAAATCTTCTCTACTATTAAAGGGG 57.093 33.333 0.00 0.00 0.00 4.79
412 413 9.323985 GCATCTTCAACAAATCTTCTCTACTAT 57.676 33.333 0.00 0.00 0.00 2.12
413 414 8.535335 AGCATCTTCAACAAATCTTCTCTACTA 58.465 33.333 0.00 0.00 0.00 1.82
414 415 7.393216 AGCATCTTCAACAAATCTTCTCTACT 58.607 34.615 0.00 0.00 0.00 2.57
415 416 7.608308 AGCATCTTCAACAAATCTTCTCTAC 57.392 36.000 0.00 0.00 0.00 2.59
416 417 7.840342 GAGCATCTTCAACAAATCTTCTCTA 57.160 36.000 0.00 0.00 0.00 2.43
417 418 6.740411 GAGCATCTTCAACAAATCTTCTCT 57.260 37.500 0.00 0.00 0.00 3.10
449 450 2.512692 TCCCATGTTGGATCTGTTGG 57.487 50.000 0.00 0.00 40.96 3.77
450 451 4.018490 TCATTCCCATGTTGGATCTGTTG 58.982 43.478 0.00 0.00 40.96 3.33
617 637 8.462811 CCTATAGATAGAATCTACAACATGCGT 58.537 37.037 0.00 0.00 44.07 5.24
618 638 8.462811 ACCTATAGATAGAATCTACAACATGCG 58.537 37.037 0.00 0.00 44.07 4.73
632 652 7.663081 ACGACGAATAACCAACCTATAGATAGA 59.337 37.037 0.00 0.00 32.05 1.98
633 653 7.814642 ACGACGAATAACCAACCTATAGATAG 58.185 38.462 0.00 0.00 0.00 2.08
634 654 7.750229 ACGACGAATAACCAACCTATAGATA 57.250 36.000 0.00 0.00 0.00 1.98
635 655 6.645790 ACGACGAATAACCAACCTATAGAT 57.354 37.500 0.00 0.00 0.00 1.98
640 660 8.632679 AGATTATTACGACGAATAACCAACCTA 58.367 33.333 0.00 0.00 34.83 3.08
655 679 8.289618 GCAAAAATGATAGCCAGATTATTACGA 58.710 33.333 0.00 0.00 0.00 3.43
656 680 7.538678 GGCAAAAATGATAGCCAGATTATTACG 59.461 37.037 0.00 0.00 46.26 3.18
657 681 8.748380 GGCAAAAATGATAGCCAGATTATTAC 57.252 34.615 0.00 0.00 46.26 1.89
1031 1087 1.523711 CTGCGTTGAGTGTGGTGGT 60.524 57.895 0.00 0.00 0.00 4.16
1145 1211 2.254350 CACGAGGCTGACGACGAA 59.746 61.111 0.00 0.00 34.70 3.85
1283 1355 1.964552 CATGCATGAGAGGTCCTTCC 58.035 55.000 22.59 0.00 0.00 3.46
1285 1357 0.622136 TGCATGCATGAGAGGTCCTT 59.378 50.000 30.64 0.00 0.00 3.36
1303 1375 6.154445 GGCATATATTCAGGCAAGAAACATG 58.846 40.000 0.00 0.00 0.00 3.21
1304 1376 5.834742 TGGCATATATTCAGGCAAGAAACAT 59.165 36.000 0.00 0.00 34.72 2.71
1310 1386 3.759581 AGGTGGCATATATTCAGGCAAG 58.240 45.455 0.00 0.00 39.62 4.01
1730 1854 7.649057 TGTAATGTACCAATCATCTAGACGAG 58.351 38.462 0.00 0.00 0.00 4.18
1742 1866 3.211045 GCCGGTGATGTAATGTACCAAT 58.789 45.455 1.90 0.00 31.48 3.16
1774 1898 1.227674 GCCATGGACGGAGATGGAC 60.228 63.158 18.40 0.00 41.63 4.02
1783 1907 4.758251 TCAGCCGTGCCATGGACG 62.758 66.667 18.40 20.90 36.56 4.79
1784 1908 1.315257 AATTCAGCCGTGCCATGGAC 61.315 55.000 18.40 10.04 0.00 4.02
1867 2173 9.135189 ACACGTAATAAAGCGGGGATATATATA 57.865 33.333 0.00 0.00 35.58 0.86
1868 2174 7.924412 CACACGTAATAAAGCGGGGATATATAT 59.076 37.037 0.00 0.00 35.58 0.86
1889 2195 6.472486 CACAGGAGTAGATTTACATACACACG 59.528 42.308 0.00 0.00 31.96 4.49
1923 2229 3.800506 GGTAACACATACACATACGGAGC 59.199 47.826 0.00 0.00 36.14 4.70
1926 2232 2.536803 GCGGTAACACATACACATACGG 59.463 50.000 0.00 0.00 36.14 4.02
2095 2401 2.776370 TACGGGAGCCACGGAGAAGT 62.776 60.000 1.98 0.00 35.23 3.01
2096 2402 2.050350 TACGGGAGCCACGGAGAAG 61.050 63.158 1.98 0.00 35.23 2.85
2097 2403 2.036098 TACGGGAGCCACGGAGAA 59.964 61.111 1.98 0.00 35.23 2.87
2098 2404 2.753043 GTACGGGAGCCACGGAGA 60.753 66.667 1.98 0.00 35.23 3.71
2099 2405 2.162338 TTTGTACGGGAGCCACGGAG 62.162 60.000 1.98 0.00 35.23 4.63
2100 2406 2.208619 TTTGTACGGGAGCCACGGA 61.209 57.895 1.98 0.00 35.23 4.69
2101 2407 2.030958 GTTTGTACGGGAGCCACGG 61.031 63.158 1.98 0.00 35.23 4.94
2102 2408 0.244450 TAGTTTGTACGGGAGCCACG 59.756 55.000 0.00 0.00 37.36 4.94
2103 2409 1.001181 TGTAGTTTGTACGGGAGCCAC 59.999 52.381 0.00 0.00 0.00 5.01
2104 2410 1.340088 TGTAGTTTGTACGGGAGCCA 58.660 50.000 0.00 0.00 0.00 4.75
2105 2411 2.460757 TTGTAGTTTGTACGGGAGCC 57.539 50.000 0.00 0.00 0.00 4.70
2106 2412 3.656559 TCTTTGTAGTTTGTACGGGAGC 58.343 45.455 0.00 0.00 0.00 4.70
2107 2413 5.120208 CACATCTTTGTAGTTTGTACGGGAG 59.880 44.000 0.00 0.00 33.76 4.30
2108 2414 4.992319 CACATCTTTGTAGTTTGTACGGGA 59.008 41.667 0.00 0.00 33.76 5.14
2109 2415 4.992319 TCACATCTTTGTAGTTTGTACGGG 59.008 41.667 0.00 0.00 33.76 5.28
2110 2416 6.721571 ATCACATCTTTGTAGTTTGTACGG 57.278 37.500 0.00 0.00 33.76 4.02
2111 2417 7.015289 CCAATCACATCTTTGTAGTTTGTACG 58.985 38.462 0.00 0.00 33.76 3.67
2112 2418 7.871853 ACCAATCACATCTTTGTAGTTTGTAC 58.128 34.615 0.00 0.00 33.76 2.90
2113 2419 8.458573 AACCAATCACATCTTTGTAGTTTGTA 57.541 30.769 0.00 0.00 33.76 2.41
2114 2420 6.959639 ACCAATCACATCTTTGTAGTTTGT 57.040 33.333 0.00 0.00 33.76 2.83
2115 2421 9.912634 ATTAACCAATCACATCTTTGTAGTTTG 57.087 29.630 0.00 0.00 33.76 2.93
2121 2427 9.912634 CAGTTAATTAACCAATCACATCTTTGT 57.087 29.630 21.92 0.00 36.88 2.83
2122 2428 8.863049 GCAGTTAATTAACCAATCACATCTTTG 58.137 33.333 21.92 11.42 36.88 2.77
2123 2429 8.806146 AGCAGTTAATTAACCAATCACATCTTT 58.194 29.630 21.92 0.00 36.88 2.52
2124 2430 8.353423 AGCAGTTAATTAACCAATCACATCTT 57.647 30.769 21.92 0.00 36.88 2.40
2125 2431 7.944729 AGCAGTTAATTAACCAATCACATCT 57.055 32.000 21.92 6.07 36.88 2.90
2146 2452 6.294564 CGGAGAAGTAAGCTGGTATATAAGCA 60.295 42.308 8.72 0.00 42.06 3.91
2147 2453 6.094061 CGGAGAAGTAAGCTGGTATATAAGC 58.906 44.000 0.00 0.00 39.82 3.09
2148 2454 7.085116 CACGGAGAAGTAAGCTGGTATATAAG 58.915 42.308 0.00 0.00 0.00 1.73
2149 2455 6.015688 CCACGGAGAAGTAAGCTGGTATATAA 60.016 42.308 0.00 0.00 0.00 0.98
2150 2456 5.475909 CCACGGAGAAGTAAGCTGGTATATA 59.524 44.000 0.00 0.00 0.00 0.86
2151 2457 4.281182 CCACGGAGAAGTAAGCTGGTATAT 59.719 45.833 0.00 0.00 0.00 0.86
2152 2458 3.635373 CCACGGAGAAGTAAGCTGGTATA 59.365 47.826 0.00 0.00 0.00 1.47
2153 2459 2.431057 CCACGGAGAAGTAAGCTGGTAT 59.569 50.000 0.00 0.00 0.00 2.73
2154 2460 1.822990 CCACGGAGAAGTAAGCTGGTA 59.177 52.381 0.00 0.00 0.00 3.25
2155 2461 0.608640 CCACGGAGAAGTAAGCTGGT 59.391 55.000 0.00 0.00 0.00 4.00
2156 2462 0.741221 GCCACGGAGAAGTAAGCTGG 60.741 60.000 0.00 0.00 0.00 4.85
2157 2463 0.247736 AGCCACGGAGAAGTAAGCTG 59.752 55.000 0.00 0.00 33.43 4.24
2158 2464 0.533032 GAGCCACGGAGAAGTAAGCT 59.467 55.000 0.00 0.00 36.16 3.74
2159 2465 0.246635 TGAGCCACGGAGAAGTAAGC 59.753 55.000 0.00 0.00 0.00 3.09
2160 2466 1.997669 GTGAGCCACGGAGAAGTAAG 58.002 55.000 0.00 0.00 0.00 2.34
2178 2484 4.541085 GGCAACTTTGTAGTTTGTACGT 57.459 40.909 0.00 0.00 41.85 3.57
2199 2505 3.544684 TGCATTGTACAAGGCCATAGAG 58.455 45.455 34.56 9.28 46.35 2.43
2204 2510 2.284754 TCTTGCATTGTACAAGGCCA 57.715 45.000 34.56 25.99 46.35 5.36
2238 2544 2.905415 TGGACGGAGGGAGTACTAAA 57.095 50.000 0.00 0.00 0.00 1.85
2239 2545 2.905415 TTGGACGGAGGGAGTACTAA 57.095 50.000 0.00 0.00 0.00 2.24
2245 2551 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2288 2594 9.420551 CGGTTTATTTTAGTCCTAGATACATCC 57.579 37.037 0.00 0.00 0.00 3.51
2342 2653 8.032451 GCTTAATTAGGCACTTCTCCTATAGAG 58.968 40.741 14.21 0.00 41.79 2.43
2432 2743 1.075374 ACAATGCAAGGTGCTTAGGGA 59.925 47.619 0.00 0.00 45.31 4.20
2433 2744 1.549203 ACAATGCAAGGTGCTTAGGG 58.451 50.000 0.00 0.00 45.31 3.53
2434 2745 3.081061 TGTACAATGCAAGGTGCTTAGG 58.919 45.455 9.81 0.00 45.31 2.69
2496 2807 3.939066 ACTATCCGGTTTTGAGACTTGG 58.061 45.455 0.00 0.00 0.00 3.61
2776 3102 5.983720 CACACGTAAGAATATTGGACCCTAG 59.016 44.000 0.00 0.00 43.62 3.02
2796 3133 2.896801 CTGGTCGCACCTTGCACAC 61.897 63.158 6.83 0.00 45.36 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.