Multiple sequence alignment - TraesCS6A01G351200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G351200 chr6A 100.000 4433 0 0 1 4433 583006332 583010764 0.000000e+00 8187.0
1 TraesCS6A01G351200 chr6A 83.388 307 49 2 4128 4433 583000349 583000654 2.610000e-72 283.0
2 TraesCS6A01G351200 chr6A 73.486 743 130 46 602 1311 582997507 582998215 7.470000e-53 219.0
3 TraesCS6A01G351200 chr6D 91.657 3476 203 37 2 3418 436090009 436093456 0.000000e+00 4732.0
4 TraesCS6A01G351200 chr6D 91.851 724 59 0 3710 4433 436093454 436094177 0.000000e+00 1011.0
5 TraesCS6A01G351200 chr6D 84.365 307 46 2 4128 4433 436076102 436076407 2.590000e-77 300.0
6 TraesCS6A01G351200 chr6D 88.596 114 12 1 2600 2712 472212991 472213104 2.150000e-28 137.0
7 TraesCS6A01G351200 chr6B 90.463 2097 135 33 514 2599 658709996 658712038 0.000000e+00 2704.0
8 TraesCS6A01G351200 chr6B 83.754 1188 176 14 1005 2182 658663622 658664802 0.000000e+00 1109.0
9 TraesCS6A01G351200 chr6B 90.746 724 67 0 3710 4433 658712715 658713438 0.000000e+00 966.0
10 TraesCS6A01G351200 chr6B 90.621 725 62 4 3715 4433 658665913 658666637 0.000000e+00 957.0
11 TraesCS6A01G351200 chr6B 90.704 710 45 9 2711 3418 658712027 658712717 0.000000e+00 926.0
12 TraesCS6A01G351200 chr6B 82.721 735 96 10 2712 3418 658665179 658665910 3.760000e-175 625.0
13 TraesCS6A01G351200 chr6B 86.364 484 58 7 1 479 658672214 658672694 5.080000e-144 521.0
14 TraesCS6A01G351200 chr6B 92.929 297 21 0 3418 3714 479295958 479296254 2.450000e-117 433.0
15 TraesCS6A01G351200 chr6B 80.781 333 43 14 2276 2597 658664865 658665187 1.590000e-59 241.0
16 TraesCS6A01G351200 chr1B 93.243 296 19 1 3418 3713 657044585 657044879 6.810000e-118 435.0
17 TraesCS6A01G351200 chr1B 92.905 296 21 0 3418 3713 496875759 496876054 8.810000e-117 431.0
18 TraesCS6A01G351200 chr2B 92.953 298 19 2 3417 3713 593792212 593791916 2.450000e-117 433.0
19 TraesCS6A01G351200 chr2B 100.000 28 0 0 2184 2211 794002716 794002689 8.000000e-03 52.8
20 TraesCS6A01G351200 chr7B 91.586 309 25 1 3406 3713 726612974 726613282 4.100000e-115 425.0
21 TraesCS6A01G351200 chr3A 92.308 299 23 0 3415 3713 195594844 195595142 4.100000e-115 425.0
22 TraesCS6A01G351200 chr4B 91.973 299 22 2 3415 3713 450948936 450949232 6.860000e-113 418.0
23 TraesCS6A01G351200 chr2D 91.667 300 25 0 3415 3714 555068302 555068003 2.470000e-112 416.0
24 TraesCS6A01G351200 chrUn 90.675 311 23 6 3423 3731 316708813 316708507 4.130000e-110 409.0
25 TraesCS6A01G351200 chrUn 87.805 123 12 3 2593 2712 47860217 47860095 1.660000e-29 141.0
26 TraesCS6A01G351200 chr5D 86.777 121 15 1 2592 2711 486817954 486817834 2.780000e-27 134.0
27 TraesCS6A01G351200 chr5D 85.841 113 16 0 2601 2713 448168964 448169076 2.170000e-23 121.0
28 TraesCS6A01G351200 chr5D 84.483 116 17 1 2598 2712 481171493 481171378 3.620000e-21 113.0
29 TraesCS6A01G351200 chr7D 86.087 115 16 0 2599 2713 379845480 379845594 1.670000e-24 124.0
30 TraesCS6A01G351200 chr2A 85.841 113 15 1 2601 2712 19596129 19596017 7.790000e-23 119.0
31 TraesCS6A01G351200 chr3B 85.088 114 16 1 2596 2708 697975743 697975630 1.010000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G351200 chr6A 583006332 583010764 4432 False 8187.0 8187 100.000000 1 4433 1 chr6A.!!$F1 4432
1 TraesCS6A01G351200 chr6A 582997507 583000654 3147 False 251.0 283 78.437000 602 4433 2 chr6A.!!$F2 3831
2 TraesCS6A01G351200 chr6D 436090009 436094177 4168 False 2871.5 4732 91.754000 2 4433 2 chr6D.!!$F3 4431
3 TraesCS6A01G351200 chr6B 658709996 658713438 3442 False 1532.0 2704 90.637667 514 4433 3 chr6B.!!$F4 3919
4 TraesCS6A01G351200 chr6B 658663622 658666637 3015 False 733.0 1109 84.469250 1005 4433 4 chr6B.!!$F3 3428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 754 0.179140 GCAGCCTCTGAAGACTCGAG 60.179 60.0 11.84 11.84 32.44 4.04 F
801 847 0.411452 TGTGTTACATGGGGGCCAAT 59.589 50.0 4.39 0.00 36.95 3.16 F
1690 1789 0.107848 CCTTCGCCTAACCGGATGTT 60.108 55.0 9.46 0.00 41.11 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1526 1619 0.034670 AAGGAGCTCCCATCTGTTGC 60.035 55.0 29.54 0.0 37.41 4.17 R
2679 3311 0.034756 TGGTTGTGTGCATCGTAGCT 59.965 50.0 0.00 0.0 34.99 3.32 R
3641 4322 0.033781 AAACACTTAGGCGCGGTACA 59.966 50.0 8.83 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.771160 GCATCCCGTCGACCACCT 61.771 66.667 10.58 0.00 0.00 4.00
27 28 2.494918 CATCCCGTCGACCACCTC 59.505 66.667 10.58 0.00 0.00 3.85
52 56 2.759973 CTAGGGAGCACCGGAGCA 60.760 66.667 26.04 3.54 46.96 4.26
75 80 0.613292 AGTCGTCCACATCTGAGCCT 60.613 55.000 0.00 0.00 0.00 4.58
110 116 1.017701 GTTTTCCCGCGACTTCCGAT 61.018 55.000 8.23 0.00 41.76 4.18
117 123 0.591741 CGCGACTTCCGATGACCTAC 60.592 60.000 0.00 0.00 41.76 3.18
137 143 1.296715 ACCATGGTGAGCTTCGACC 59.703 57.895 18.99 4.03 0.00 4.79
149 155 0.323629 CTTCGACCAAACCCTAGCCA 59.676 55.000 0.00 0.00 0.00 4.75
152 158 0.541863 CGACCAAACCCTAGCCATCT 59.458 55.000 0.00 0.00 0.00 2.90
158 164 3.117738 CCAAACCCTAGCCATCTGATCTT 60.118 47.826 0.00 0.00 0.00 2.40
161 167 3.596101 ACCCTAGCCATCTGATCTTGAT 58.404 45.455 0.00 0.00 0.00 2.57
224 230 2.094675 AGATTTTGGCCGTTGGATCTG 58.905 47.619 0.00 0.00 0.00 2.90
225 231 1.134946 GATTTTGGCCGTTGGATCTGG 59.865 52.381 0.00 0.00 0.00 3.86
232 238 0.324943 CCGTTGGATCTGGAACTGGT 59.675 55.000 0.00 0.00 0.00 4.00
237 243 2.626785 TGGATCTGGAACTGGTGGTTA 58.373 47.619 0.00 0.00 38.41 2.85
241 247 1.069513 TCTGGAACTGGTGGTTACGTG 59.930 52.381 0.00 0.00 41.52 4.49
247 253 4.516321 GGAACTGGTGGTTACGTGTTAATT 59.484 41.667 0.00 0.00 38.41 1.40
282 288 4.023021 GGTACCGATGAATCAGAGACTACC 60.023 50.000 0.00 0.00 0.00 3.18
301 307 1.208535 CCACGTAGCCAACCTTATCCA 59.791 52.381 0.00 0.00 0.00 3.41
309 315 7.994334 ACGTAGCCAACCTTATCCAAAATATTA 59.006 33.333 0.00 0.00 0.00 0.98
312 318 8.422577 AGCCAACCTTATCCAAAATATTATCC 57.577 34.615 0.00 0.00 0.00 2.59
324 330 8.748412 TCCAAAATATTATCCAGAACAGTTTGG 58.252 33.333 0.00 0.00 41.57 3.28
335 341 7.841956 TCCAGAACAGTTTGGTCAAATTTAAA 58.158 30.769 11.86 0.00 36.30 1.52
365 371 4.953579 ACAGTTTTGCAGAAAAGACCCTAA 59.046 37.500 0.00 0.00 31.57 2.69
371 377 6.538945 TTGCAGAAAAGACCCTAAAACTTT 57.461 33.333 0.00 0.00 35.74 2.66
372 378 7.648039 TTGCAGAAAAGACCCTAAAACTTTA 57.352 32.000 0.00 0.00 34.18 1.85
423 429 8.882736 CAAGTCCAAAATTAGCTGAAACTTTTT 58.117 29.630 0.00 0.00 0.00 1.94
441 447 5.237127 ACTTTTTGCAAAATGAAGCTTAGGC 59.763 36.000 32.56 0.00 39.06 3.93
479 485 2.501128 CAGTCCGGCGATGATGGT 59.499 61.111 9.30 0.00 0.00 3.55
480 486 1.592669 CAGTCCGGCGATGATGGTC 60.593 63.158 9.30 0.00 0.00 4.02
481 487 2.280186 GTCCGGCGATGATGGTCC 60.280 66.667 9.30 0.00 0.00 4.46
482 488 2.762043 TCCGGCGATGATGGTCCA 60.762 61.111 9.30 0.00 0.00 4.02
485 491 0.819259 CCGGCGATGATGGTCCATTT 60.819 55.000 9.30 0.00 0.00 2.32
486 492 0.588252 CGGCGATGATGGTCCATTTC 59.412 55.000 5.65 5.81 0.00 2.17
488 494 2.023673 GGCGATGATGGTCCATTTCAA 58.976 47.619 5.65 0.00 0.00 2.69
489 495 2.624838 GGCGATGATGGTCCATTTCAAT 59.375 45.455 5.65 0.00 0.00 2.57
509 528 7.864108 TCAATGTAAGGACCTGAATGTATTG 57.136 36.000 0.00 1.77 0.00 1.90
546 576 0.469144 ATTTCACTGTTTGGCCGGGT 60.469 50.000 2.18 0.00 0.00 5.28
600 637 3.122780 CGTGTGCTTGTATTCGATGAACA 59.877 43.478 0.00 0.00 0.00 3.18
623 660 0.935196 AAGAAACAAGACGACGTGGC 59.065 50.000 4.58 0.00 0.00 5.01
714 754 0.179140 GCAGCCTCTGAAGACTCGAG 60.179 60.000 11.84 11.84 32.44 4.04
716 756 1.140804 GCCTCTGAAGACTCGAGCC 59.859 63.158 13.61 0.00 0.00 4.70
728 770 1.412710 ACTCGAGCCAAGTCAAGAACA 59.587 47.619 13.61 0.00 0.00 3.18
801 847 0.411452 TGTGTTACATGGGGGCCAAT 59.589 50.000 4.39 0.00 36.95 3.16
803 849 0.707024 TGTTACATGGGGGCCAATGA 59.293 50.000 21.39 6.12 36.95 2.57
864 921 2.420022 GCTTTGTGCTTGGTACGATCAT 59.580 45.455 0.00 0.00 38.95 2.45
888 945 1.532868 GCATTATGCCCTCAACTAGCG 59.467 52.381 5.80 0.00 37.42 4.26
1104 1185 2.745492 GCAGACAGCAGTGCCTCC 60.745 66.667 12.58 0.40 44.79 4.30
1362 1455 3.906846 CCAGGCTTACCTCTCTCCAATAT 59.093 47.826 0.00 0.00 46.34 1.28
1376 1469 4.968719 TCTCCAATATCTCAACCTTGCCTA 59.031 41.667 0.00 0.00 0.00 3.93
1453 1546 2.632996 CTGACCTACCTCAACCTGTCAA 59.367 50.000 0.00 0.00 32.87 3.18
1454 1547 2.367567 TGACCTACCTCAACCTGTCAAC 59.632 50.000 0.00 0.00 30.44 3.18
1455 1548 1.697982 ACCTACCTCAACCTGTCAACC 59.302 52.381 0.00 0.00 0.00 3.77
1464 1557 1.680338 ACCTGTCAACCTGCAACTTC 58.320 50.000 0.00 0.00 0.00 3.01
1465 1558 1.212935 ACCTGTCAACCTGCAACTTCT 59.787 47.619 0.00 0.00 0.00 2.85
1480 1573 4.082733 GCAACTTCTATTTTCAGGTCCCAC 60.083 45.833 0.00 0.00 0.00 4.61
1525 1618 3.742983 GTCATCCTCGACCTTGGAC 57.257 57.895 0.00 0.00 34.90 4.02
1526 1619 0.179134 GTCATCCTCGACCTTGGACG 60.179 60.000 5.26 5.26 34.90 4.79
1544 1643 1.606531 GCAACAGATGGGAGCTCCT 59.393 57.895 31.36 13.94 36.20 3.69
1554 1653 2.047443 GGAGCTCCTTCCGTCGACT 61.047 63.158 26.25 0.00 0.00 4.18
1555 1654 1.137825 GAGCTCCTTCCGTCGACTG 59.862 63.158 14.70 7.40 0.00 3.51
1565 1664 1.287815 CGTCGACTGTAGTGGCCAA 59.712 57.895 7.24 0.00 0.00 4.52
1575 1674 1.274447 GTAGTGGCCAACGACCTTAGT 59.726 52.381 7.24 0.00 0.00 2.24
1623 1722 1.260561 GTTAATATCACCGGCACAGCG 59.739 52.381 0.00 0.00 0.00 5.18
1678 1777 1.474143 CCCTTCTTCAGATCCTTCGCC 60.474 57.143 0.00 0.00 0.00 5.54
1682 1781 3.802948 TCTTCAGATCCTTCGCCTAAC 57.197 47.619 0.00 0.00 0.00 2.34
1690 1789 0.107848 CCTTCGCCTAACCGGATGTT 60.108 55.000 9.46 0.00 41.11 2.71
1716 1815 2.244117 CTGGTCCACTCCACCCATCG 62.244 65.000 0.00 0.00 32.24 3.84
1796 1895 3.405831 CTCTGCCTGATTTGTTCACTCA 58.594 45.455 0.00 0.00 0.00 3.41
1805 1904 6.810182 CCTGATTTGTTCACTCATTCCAATTC 59.190 38.462 0.00 0.00 0.00 2.17
1835 1934 0.664466 CGAGAACTTGTGCTCGCTGA 60.664 55.000 16.85 0.00 45.97 4.26
1836 1935 1.066914 GAGAACTTGTGCTCGCTGAG 58.933 55.000 0.00 1.80 0.00 3.35
1852 1951 2.676463 GCTGAGAACAGATTCGAGCCTT 60.676 50.000 0.00 0.00 46.03 4.35
1853 1952 3.186119 CTGAGAACAGATTCGAGCCTTC 58.814 50.000 0.00 0.00 46.03 3.46
2053 2152 4.161189 ACTTGATCATACTGGACTGTCAGG 59.839 45.833 10.38 4.08 38.98 3.86
2109 2208 4.634443 ACAAGCTTAACACGACTTGAAAGT 59.366 37.500 0.00 0.00 41.59 2.66
2299 2673 3.282021 TGGATCCTGCAATGTTCTTAGC 58.718 45.455 14.23 0.00 0.00 3.09
2428 3032 7.824289 TGAGTTTTAGTGTATCCTGAATTCCTG 59.176 37.037 2.27 0.00 0.00 3.86
2489 3117 5.529800 TGTTTAAGACTTTGTAGACAAGGGC 59.470 40.000 9.07 5.92 40.83 5.19
2589 3221 7.174946 TGTCTTGGGCAGATTTAAGAAAACTAG 59.825 37.037 0.00 0.00 32.60 2.57
2599 3231 9.301897 AGATTTAAGAAAACTAGCCATGTTCTT 57.698 29.630 9.38 9.38 40.61 2.52
2651 3283 6.887545 TCTCAAAAATATCAATTACACCCGGT 59.112 34.615 0.00 0.00 0.00 5.28
2652 3284 7.066525 TCTCAAAAATATCAATTACACCCGGTC 59.933 37.037 0.00 0.00 0.00 4.79
2653 3285 6.887545 TCAAAAATATCAATTACACCCGGTCT 59.112 34.615 0.00 0.00 0.00 3.85
2657 3289 2.253610 TCAATTACACCCGGTCTCTGT 58.746 47.619 0.00 0.00 0.00 3.41
2666 3298 1.607251 CCCGGTCTCTGTACCAACAAC 60.607 57.143 0.00 0.00 39.71 3.32
2674 3306 4.133820 CTCTGTACCAACAACATGTCCAA 58.866 43.478 0.00 0.00 34.49 3.53
2675 3307 4.527944 TCTGTACCAACAACATGTCCAAA 58.472 39.130 0.00 0.00 34.49 3.28
2676 3308 4.578516 TCTGTACCAACAACATGTCCAAAG 59.421 41.667 0.00 0.00 34.49 2.77
2677 3309 4.527944 TGTACCAACAACATGTCCAAAGA 58.472 39.130 0.00 0.00 30.91 2.52
2678 3310 4.336993 TGTACCAACAACATGTCCAAAGAC 59.663 41.667 0.00 0.00 36.71 3.01
2679 3311 6.094262 TGTACCAACAACATGTCCAAAGACA 61.094 40.000 0.00 0.00 44.40 3.41
2680 3312 7.845871 TGTACCAACAACATGTCCAAAGACAG 61.846 42.308 0.00 0.00 43.91 3.51
2695 3327 1.000843 AGACAGCTACGATGCACACAA 59.999 47.619 0.00 0.00 34.99 3.33
2922 3559 6.593072 GTTCAAATTTTACAAGATGCAAGCC 58.407 36.000 0.00 0.00 0.00 4.35
2944 3581 2.628178 ACATCCAGAGAGTTCAACGACA 59.372 45.455 0.00 0.00 0.00 4.35
3062 3739 4.383335 CGGTCCTTGGCTACCAGTTTTATA 60.383 45.833 0.00 0.00 35.35 0.98
3313 3994 3.070018 CAGCTAACAGGTTCAGTTCCAG 58.930 50.000 0.00 0.00 0.00 3.86
3426 4107 3.401589 AGGAACCTTAGTACTCCCTCC 57.598 52.381 0.00 0.00 0.00 4.30
3427 4108 2.030371 GGAACCTTAGTACTCCCTCCG 58.970 57.143 0.00 0.00 0.00 4.63
3428 4109 2.622714 GGAACCTTAGTACTCCCTCCGT 60.623 54.545 0.00 0.00 0.00 4.69
3429 4110 2.433662 ACCTTAGTACTCCCTCCGTC 57.566 55.000 0.00 0.00 0.00 4.79
3430 4111 1.921748 ACCTTAGTACTCCCTCCGTCT 59.078 52.381 0.00 0.00 0.00 4.18
3431 4112 3.118531 ACCTTAGTACTCCCTCCGTCTA 58.881 50.000 0.00 0.00 0.00 2.59
3432 4113 3.136260 ACCTTAGTACTCCCTCCGTCTAG 59.864 52.174 0.00 0.00 0.00 2.43
3433 4114 3.496515 CCTTAGTACTCCCTCCGTCTAGG 60.497 56.522 0.00 0.00 42.97 3.02
3434 4115 1.594129 AGTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
3435 4116 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
3436 4117 1.211457 GTACTCCCTCCGTCTAGGTGA 59.789 57.143 0.00 0.00 41.99 4.02
3437 4118 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
3438 4119 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
3439 4120 0.255318 TCCCTCCGTCTAGGTGAGTC 59.745 60.000 0.00 0.00 41.99 3.36
3440 4121 0.034380 CCCTCCGTCTAGGTGAGTCA 60.034 60.000 0.00 0.00 41.99 3.41
3441 4122 1.384525 CCTCCGTCTAGGTGAGTCAG 58.615 60.000 0.00 0.00 41.99 3.51
3442 4123 1.340211 CCTCCGTCTAGGTGAGTCAGT 60.340 57.143 0.00 0.00 41.99 3.41
3443 4124 2.011222 CTCCGTCTAGGTGAGTCAGTC 58.989 57.143 0.00 0.00 41.99 3.51
3444 4125 1.350019 TCCGTCTAGGTGAGTCAGTCA 59.650 52.381 0.00 0.00 41.99 3.41
3445 4126 2.026169 TCCGTCTAGGTGAGTCAGTCAT 60.026 50.000 0.00 0.00 41.99 3.06
3446 4127 2.356382 CCGTCTAGGTGAGTCAGTCATC 59.644 54.545 0.00 0.00 37.56 2.92
3448 4129 3.692101 CGTCTAGGTGAGTCAGTCATCTT 59.308 47.826 0.00 0.00 45.09 2.40
3449 4130 4.876679 CGTCTAGGTGAGTCAGTCATCTTA 59.123 45.833 0.00 0.00 45.09 2.10
3450 4131 5.007234 CGTCTAGGTGAGTCAGTCATCTTAG 59.993 48.000 0.00 0.00 45.09 2.18
3451 4132 5.298276 GTCTAGGTGAGTCAGTCATCTTAGG 59.702 48.000 0.00 0.00 45.09 2.69
3452 4133 4.054359 AGGTGAGTCAGTCATCTTAGGT 57.946 45.455 0.00 0.00 45.09 3.08
3453 4134 4.421131 AGGTGAGTCAGTCATCTTAGGTT 58.579 43.478 0.00 0.00 45.09 3.50
3454 4135 4.221703 AGGTGAGTCAGTCATCTTAGGTTG 59.778 45.833 0.00 0.00 45.09 3.77
3455 4136 4.021016 GGTGAGTCAGTCATCTTAGGTTGT 60.021 45.833 0.00 0.00 37.56 3.32
3456 4137 4.926238 GTGAGTCAGTCATCTTAGGTTGTG 59.074 45.833 0.00 0.00 37.56 3.33
3457 4138 3.929610 GAGTCAGTCATCTTAGGTTGTGC 59.070 47.826 0.00 0.00 0.00 4.57
3458 4139 3.324846 AGTCAGTCATCTTAGGTTGTGCA 59.675 43.478 0.00 0.00 0.00 4.57
3459 4140 3.433615 GTCAGTCATCTTAGGTTGTGCAC 59.566 47.826 10.75 10.75 0.00 4.57
3467 4148 4.057224 GGTTGTGCACCGTGATCA 57.943 55.556 15.69 0.00 35.12 2.92
3468 4149 2.326222 GGTTGTGCACCGTGATCAA 58.674 52.632 15.69 3.89 35.12 2.57
3469 4150 0.238289 GGTTGTGCACCGTGATCAAG 59.762 55.000 15.69 0.00 35.12 3.02
3470 4151 0.238289 GTTGTGCACCGTGATCAAGG 59.762 55.000 24.13 24.13 35.99 3.61
3471 4152 0.107643 TTGTGCACCGTGATCAAGGA 59.892 50.000 31.07 8.96 33.97 3.36
3472 4153 0.320683 TGTGCACCGTGATCAAGGAG 60.321 55.000 31.07 24.50 33.97 3.69
3473 4154 1.021390 GTGCACCGTGATCAAGGAGG 61.021 60.000 31.07 22.40 33.97 4.30
3474 4155 1.191489 TGCACCGTGATCAAGGAGGA 61.191 55.000 31.07 22.62 33.97 3.71
3475 4156 0.460987 GCACCGTGATCAAGGAGGAG 60.461 60.000 31.07 18.39 33.97 3.69
3476 4157 0.176680 CACCGTGATCAAGGAGGAGG 59.823 60.000 31.07 12.55 33.97 4.30
3477 4158 0.978146 ACCGTGATCAAGGAGGAGGG 60.978 60.000 31.07 9.17 33.97 4.30
3478 4159 1.690219 CCGTGATCAAGGAGGAGGGG 61.690 65.000 21.80 0.00 31.21 4.79
3479 4160 0.687757 CGTGATCAAGGAGGAGGGGA 60.688 60.000 0.00 0.00 0.00 4.81
3480 4161 1.584724 GTGATCAAGGAGGAGGGGAA 58.415 55.000 0.00 0.00 0.00 3.97
3481 4162 1.916181 GTGATCAAGGAGGAGGGGAAA 59.084 52.381 0.00 0.00 0.00 3.13
3482 4163 2.308866 GTGATCAAGGAGGAGGGGAAAA 59.691 50.000 0.00 0.00 0.00 2.29
3483 4164 3.053320 GTGATCAAGGAGGAGGGGAAAAT 60.053 47.826 0.00 0.00 0.00 1.82
3484 4165 4.166144 GTGATCAAGGAGGAGGGGAAAATA 59.834 45.833 0.00 0.00 0.00 1.40
3485 4166 4.793520 TGATCAAGGAGGAGGGGAAAATAA 59.206 41.667 0.00 0.00 0.00 1.40
3486 4167 4.862641 TCAAGGAGGAGGGGAAAATAAG 57.137 45.455 0.00 0.00 0.00 1.73
3487 4168 4.444611 TCAAGGAGGAGGGGAAAATAAGA 58.555 43.478 0.00 0.00 0.00 2.10
3488 4169 4.475016 TCAAGGAGGAGGGGAAAATAAGAG 59.525 45.833 0.00 0.00 0.00 2.85
3489 4170 4.369809 AGGAGGAGGGGAAAATAAGAGA 57.630 45.455 0.00 0.00 0.00 3.10
3490 4171 4.041464 AGGAGGAGGGGAAAATAAGAGAC 58.959 47.826 0.00 0.00 0.00 3.36
3491 4172 4.041464 GGAGGAGGGGAAAATAAGAGACT 58.959 47.826 0.00 0.00 0.00 3.24
3492 4173 4.475381 GGAGGAGGGGAAAATAAGAGACTT 59.525 45.833 0.00 0.00 0.00 3.01
3493 4174 5.044772 GGAGGAGGGGAAAATAAGAGACTTT 60.045 44.000 0.00 0.00 0.00 2.66
3494 4175 6.158169 GGAGGAGGGGAAAATAAGAGACTTTA 59.842 42.308 0.00 0.00 0.00 1.85
3495 4176 7.311739 GGAGGAGGGGAAAATAAGAGACTTTAA 60.312 40.741 0.00 0.00 0.00 1.52
3496 4177 8.176216 AGGAGGGGAAAATAAGAGACTTTAAT 57.824 34.615 0.00 0.00 0.00 1.40
3497 4178 8.055790 AGGAGGGGAAAATAAGAGACTTTAATG 58.944 37.037 0.00 0.00 0.00 1.90
3498 4179 7.834681 GGAGGGGAAAATAAGAGACTTTAATGT 59.165 37.037 0.00 0.00 0.00 2.71
3499 4180 9.244292 GAGGGGAAAATAAGAGACTTTAATGTT 57.756 33.333 0.00 0.00 0.00 2.71
3500 4181 9.601810 AGGGGAAAATAAGAGACTTTAATGTTT 57.398 29.630 0.00 0.00 0.00 2.83
3544 4225 4.804868 ATGCAATGAATTAACCACTGCA 57.195 36.364 15.13 15.13 42.02 4.41
3545 4226 4.804868 TGCAATGAATTAACCACTGCAT 57.195 36.364 10.52 0.00 33.65 3.96
3546 4227 4.496360 TGCAATGAATTAACCACTGCATG 58.504 39.130 10.52 0.00 33.65 4.06
3547 4228 4.021280 TGCAATGAATTAACCACTGCATGT 60.021 37.500 10.52 0.00 33.65 3.21
3548 4229 4.563976 GCAATGAATTAACCACTGCATGTC 59.436 41.667 7.86 0.00 0.00 3.06
3549 4230 5.712004 CAATGAATTAACCACTGCATGTCA 58.288 37.500 0.00 0.00 0.00 3.58
3550 4231 6.334989 CAATGAATTAACCACTGCATGTCAT 58.665 36.000 0.00 0.00 0.00 3.06
3551 4232 5.313520 TGAATTAACCACTGCATGTCATG 57.686 39.130 8.56 8.56 0.00 3.07
3552 4233 4.766373 TGAATTAACCACTGCATGTCATGT 59.234 37.500 14.26 0.00 0.00 3.21
3553 4234 5.243507 TGAATTAACCACTGCATGTCATGTT 59.756 36.000 14.26 2.48 0.00 2.71
3554 4235 5.726980 ATTAACCACTGCATGTCATGTTT 57.273 34.783 14.26 0.00 0.00 2.83
3555 4236 3.374220 AACCACTGCATGTCATGTTTG 57.626 42.857 14.26 8.62 0.00 2.93
3556 4237 1.614903 ACCACTGCATGTCATGTTTGG 59.385 47.619 19.80 19.80 34.06 3.28
3557 4238 1.614903 CCACTGCATGTCATGTTTGGT 59.385 47.619 14.26 5.69 0.00 3.67
3558 4239 2.819019 CCACTGCATGTCATGTTTGGTA 59.181 45.455 14.26 0.00 0.00 3.25
3559 4240 3.119743 CCACTGCATGTCATGTTTGGTAG 60.120 47.826 14.26 6.33 0.00 3.18
3560 4241 3.503363 CACTGCATGTCATGTTTGGTAGT 59.497 43.478 14.26 6.85 0.00 2.73
3561 4242 3.753272 ACTGCATGTCATGTTTGGTAGTC 59.247 43.478 14.26 0.00 0.00 2.59
3562 4243 4.005650 CTGCATGTCATGTTTGGTAGTCT 58.994 43.478 14.26 0.00 0.00 3.24
3563 4244 4.002982 TGCATGTCATGTTTGGTAGTCTC 58.997 43.478 14.26 0.00 0.00 3.36
3564 4245 4.002982 GCATGTCATGTTTGGTAGTCTCA 58.997 43.478 14.26 0.00 0.00 3.27
3565 4246 4.455533 GCATGTCATGTTTGGTAGTCTCAA 59.544 41.667 14.26 0.00 0.00 3.02
3566 4247 5.391310 GCATGTCATGTTTGGTAGTCTCAAG 60.391 44.000 14.26 0.00 0.00 3.02
3567 4248 5.545063 TGTCATGTTTGGTAGTCTCAAGA 57.455 39.130 0.00 0.00 0.00 3.02
3568 4249 5.297547 TGTCATGTTTGGTAGTCTCAAGAC 58.702 41.667 1.79 1.79 45.08 3.01
3583 4264 7.495339 GTCTCAAGACATTAAAGACGTAGAC 57.505 40.000 5.28 0.00 44.18 2.59
3584 4265 7.082602 GTCTCAAGACATTAAAGACGTAGACA 58.917 38.462 5.28 0.00 44.18 3.41
3585 4266 7.060864 GTCTCAAGACATTAAAGACGTAGACAC 59.939 40.741 5.28 0.00 44.18 3.67
3586 4267 6.154445 TCAAGACATTAAAGACGTAGACACC 58.846 40.000 0.00 0.00 0.00 4.16
3587 4268 5.979288 AGACATTAAAGACGTAGACACCT 57.021 39.130 0.00 0.00 0.00 4.00
3588 4269 5.952033 AGACATTAAAGACGTAGACACCTC 58.048 41.667 0.00 0.00 0.00 3.85
3589 4270 5.711036 AGACATTAAAGACGTAGACACCTCT 59.289 40.000 0.00 0.00 0.00 3.69
3590 4271 5.952033 ACATTAAAGACGTAGACACCTCTC 58.048 41.667 0.00 0.00 0.00 3.20
3591 4272 5.475909 ACATTAAAGACGTAGACACCTCTCA 59.524 40.000 0.00 0.00 0.00 3.27
3592 4273 6.153000 ACATTAAAGACGTAGACACCTCTCAT 59.847 38.462 0.00 0.00 0.00 2.90
3593 4274 4.705337 AAAGACGTAGACACCTCTCATC 57.295 45.455 0.00 0.00 0.00 2.92
3594 4275 3.637911 AGACGTAGACACCTCTCATCT 57.362 47.619 0.00 0.00 0.00 2.90
3595 4276 3.537580 AGACGTAGACACCTCTCATCTC 58.462 50.000 0.00 0.00 0.00 2.75
3596 4277 3.199071 AGACGTAGACACCTCTCATCTCT 59.801 47.826 0.00 0.00 0.00 3.10
3597 4278 3.537580 ACGTAGACACCTCTCATCTCTC 58.462 50.000 0.00 0.00 0.00 3.20
3598 4279 3.055021 ACGTAGACACCTCTCATCTCTCA 60.055 47.826 0.00 0.00 0.00 3.27
3599 4280 4.133820 CGTAGACACCTCTCATCTCTCAT 58.866 47.826 0.00 0.00 0.00 2.90
3600 4281 4.578516 CGTAGACACCTCTCATCTCTCATT 59.421 45.833 0.00 0.00 0.00 2.57
3601 4282 5.505489 CGTAGACACCTCTCATCTCTCATTG 60.505 48.000 0.00 0.00 0.00 2.82
3602 4283 3.705579 AGACACCTCTCATCTCTCATTGG 59.294 47.826 0.00 0.00 0.00 3.16
3603 4284 3.448934 ACACCTCTCATCTCTCATTGGT 58.551 45.455 0.00 0.00 0.00 3.67
3604 4285 3.843027 ACACCTCTCATCTCTCATTGGTT 59.157 43.478 0.00 0.00 0.00 3.67
3605 4286 4.190001 CACCTCTCATCTCTCATTGGTTG 58.810 47.826 0.00 0.00 0.00 3.77
3606 4287 4.081254 CACCTCTCATCTCTCATTGGTTGA 60.081 45.833 0.00 0.00 0.00 3.18
3607 4288 4.720773 ACCTCTCATCTCTCATTGGTTGAT 59.279 41.667 0.00 0.00 32.72 2.57
3608 4289 5.901853 ACCTCTCATCTCTCATTGGTTGATA 59.098 40.000 0.00 0.00 32.72 2.15
3609 4290 6.558014 ACCTCTCATCTCTCATTGGTTGATAT 59.442 38.462 0.00 0.00 32.72 1.63
3610 4291 6.874664 CCTCTCATCTCTCATTGGTTGATATG 59.125 42.308 0.00 0.00 32.72 1.78
3611 4292 6.228995 TCTCATCTCTCATTGGTTGATATGC 58.771 40.000 0.00 0.00 32.72 3.14
3612 4293 5.311265 TCATCTCTCATTGGTTGATATGCC 58.689 41.667 0.00 0.00 32.72 4.40
3613 4294 4.776435 TCTCTCATTGGTTGATATGCCA 57.224 40.909 0.00 0.00 32.72 4.92
3615 4296 5.508567 TCTCTCATTGGTTGATATGCCAAA 58.491 37.500 6.97 0.00 46.34 3.28
3616 4297 5.951148 TCTCTCATTGGTTGATATGCCAAAA 59.049 36.000 6.97 0.52 46.34 2.44
3617 4298 6.436847 TCTCTCATTGGTTGATATGCCAAAAA 59.563 34.615 6.97 0.26 46.34 1.94
3646 4327 7.895975 AAAACGAGGTAGAAGTTAATGTACC 57.104 36.000 0.00 0.00 39.02 3.34
3647 4328 5.240713 ACGAGGTAGAAGTTAATGTACCG 57.759 43.478 0.00 0.00 42.49 4.02
3648 4329 4.040376 CGAGGTAGAAGTTAATGTACCGC 58.960 47.826 0.00 0.00 42.49 5.68
3649 4330 4.037858 AGGTAGAAGTTAATGTACCGCG 57.962 45.455 0.00 0.00 42.49 6.46
3650 4331 2.537214 GGTAGAAGTTAATGTACCGCGC 59.463 50.000 0.00 0.00 30.56 6.86
3651 4332 1.648504 AGAAGTTAATGTACCGCGCC 58.351 50.000 0.00 0.00 0.00 6.53
3652 4333 1.206371 AGAAGTTAATGTACCGCGCCT 59.794 47.619 0.00 0.00 0.00 5.52
3653 4334 2.428171 AGAAGTTAATGTACCGCGCCTA 59.572 45.455 0.00 0.00 0.00 3.93
3654 4335 2.965572 AGTTAATGTACCGCGCCTAA 57.034 45.000 0.00 0.00 0.00 2.69
3655 4336 2.817901 AGTTAATGTACCGCGCCTAAG 58.182 47.619 0.00 0.00 0.00 2.18
3656 4337 2.167075 AGTTAATGTACCGCGCCTAAGT 59.833 45.455 0.00 0.00 0.00 2.24
3657 4338 2.212869 TAATGTACCGCGCCTAAGTG 57.787 50.000 0.00 0.00 0.00 3.16
3658 4339 0.248289 AATGTACCGCGCCTAAGTGT 59.752 50.000 0.00 0.00 0.00 3.55
3659 4340 0.248289 ATGTACCGCGCCTAAGTGTT 59.752 50.000 0.00 0.00 0.00 3.32
3660 4341 0.033781 TGTACCGCGCCTAAGTGTTT 59.966 50.000 0.00 0.00 0.00 2.83
3661 4342 1.150827 GTACCGCGCCTAAGTGTTTT 58.849 50.000 0.00 0.00 0.00 2.43
3662 4343 1.136169 GTACCGCGCCTAAGTGTTTTG 60.136 52.381 0.00 0.00 0.00 2.44
3663 4344 1.209127 CCGCGCCTAAGTGTTTTGG 59.791 57.895 0.00 0.00 33.04 3.28
3664 4345 1.209127 CGCGCCTAAGTGTTTTGGG 59.791 57.895 0.00 0.00 30.91 4.12
3665 4346 1.231958 CGCGCCTAAGTGTTTTGGGA 61.232 55.000 0.00 0.00 30.91 4.37
3666 4347 1.173913 GCGCCTAAGTGTTTTGGGAT 58.826 50.000 0.00 0.00 30.91 3.85
3667 4348 1.544246 GCGCCTAAGTGTTTTGGGATT 59.456 47.619 0.00 0.00 30.91 3.01
3668 4349 2.750712 GCGCCTAAGTGTTTTGGGATTA 59.249 45.455 0.00 0.00 30.91 1.75
3669 4350 3.380320 GCGCCTAAGTGTTTTGGGATTAT 59.620 43.478 0.00 0.00 30.91 1.28
3670 4351 4.142249 GCGCCTAAGTGTTTTGGGATTATT 60.142 41.667 0.00 0.00 30.91 1.40
3671 4352 5.623596 GCGCCTAAGTGTTTTGGGATTATTT 60.624 40.000 0.00 0.00 30.91 1.40
3672 4353 6.404954 GCGCCTAAGTGTTTTGGGATTATTTA 60.405 38.462 0.00 0.00 30.91 1.40
3673 4354 7.193595 CGCCTAAGTGTTTTGGGATTATTTAG 58.806 38.462 0.00 0.00 30.91 1.85
3674 4355 7.148137 CGCCTAAGTGTTTTGGGATTATTTAGT 60.148 37.037 0.00 0.00 30.91 2.24
3675 4356 8.528643 GCCTAAGTGTTTTGGGATTATTTAGTT 58.471 33.333 0.00 0.00 30.91 2.24
3679 4360 9.471084 AAGTGTTTTGGGATTATTTAGTTTTCG 57.529 29.630 0.00 0.00 0.00 3.46
3680 4361 8.635328 AGTGTTTTGGGATTATTTAGTTTTCGT 58.365 29.630 0.00 0.00 0.00 3.85
3681 4362 9.896263 GTGTTTTGGGATTATTTAGTTTTCGTA 57.104 29.630 0.00 0.00 0.00 3.43
3702 4383 8.375608 TCGTAAGATGACTTATACACCTAGAC 57.624 38.462 0.00 0.00 45.01 2.59
3703 4384 7.170489 TCGTAAGATGACTTATACACCTAGACG 59.830 40.741 0.00 0.00 45.01 4.18
3704 4385 6.636562 AAGATGACTTATACACCTAGACGG 57.363 41.667 0.00 0.00 34.28 4.79
3705 4386 5.938279 AGATGACTTATACACCTAGACGGA 58.062 41.667 0.00 0.00 36.31 4.69
3706 4387 5.998981 AGATGACTTATACACCTAGACGGAG 59.001 44.000 0.00 0.00 36.31 4.63
3707 4388 4.458397 TGACTTATACACCTAGACGGAGG 58.542 47.826 0.00 0.00 42.89 4.30
3708 4389 3.819902 GACTTATACACCTAGACGGAGGG 59.180 52.174 5.42 0.00 41.36 4.30
3709 4390 3.461085 ACTTATACACCTAGACGGAGGGA 59.539 47.826 5.42 0.00 41.36 4.20
3710 4391 2.660670 ATACACCTAGACGGAGGGAG 57.339 55.000 5.42 0.78 41.36 4.30
3711 4392 1.293062 TACACCTAGACGGAGGGAGT 58.707 55.000 5.42 5.82 41.36 3.85
3855 4536 3.367087 CCCTTGCCGTTAGATATCTACCG 60.367 52.174 19.55 19.55 34.69 4.02
3862 4543 5.248640 CCGTTAGATATCTACCGGGAGTAA 58.751 45.833 30.93 7.58 46.56 2.24
3880 4561 6.989759 GGGAGTAAAAGATTTGGATCTCTCTC 59.010 42.308 0.00 0.00 41.78 3.20
3932 4613 4.410099 TGGATTTGGAGAAACATGAGCTT 58.590 39.130 0.00 0.00 0.00 3.74
3933 4614 4.834496 TGGATTTGGAGAAACATGAGCTTT 59.166 37.500 0.00 0.00 0.00 3.51
3939 4620 6.409524 TGGAGAAACATGAGCTTTTTGAAT 57.590 33.333 0.00 0.00 0.00 2.57
3994 4675 5.643777 CAGCCCCTGCACTATGTTAATATAC 59.356 44.000 0.00 0.00 41.13 1.47
4003 4687 8.145122 TGCACTATGTTAATATACGGTTCATCA 58.855 33.333 0.00 0.00 0.00 3.07
4054 4738 3.488090 CTTTCCCCTTCGACGCGC 61.488 66.667 5.73 0.00 0.00 6.86
4074 4758 3.735208 CGCACGATCTTGACTACTCCAAT 60.735 47.826 2.89 0.00 0.00 3.16
4194 4908 5.221803 CCCCTACTCAGAATGTCATAAGCAT 60.222 44.000 0.00 0.00 37.40 3.79
4195 4909 5.699915 CCCTACTCAGAATGTCATAAGCATG 59.300 44.000 0.00 0.00 37.40 4.06
4404 5121 3.686622 GCACCTGCCGAGATCATTA 57.313 52.632 0.00 0.00 34.31 1.90
4428 5145 1.736032 CGGTGTCAGTACTTGCTAGCC 60.736 57.143 13.29 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 50 2.024871 GGACGACTCGATGCTCCG 59.975 66.667 5.20 0.00 0.00 4.63
52 56 1.673400 CTCAGATGTGGACGACTCGAT 59.327 52.381 5.20 0.00 0.00 3.59
88 93 0.601841 GGAAGTCGCGGGAAAACTCA 60.602 55.000 6.13 0.00 0.00 3.41
92 97 1.017177 CATCGGAAGTCGCGGGAAAA 61.017 55.000 6.13 0.00 39.05 2.29
117 123 1.021390 GTCGAAGCTCACCATGGTGG 61.021 60.000 38.12 29.52 45.43 4.61
136 142 2.441001 AGATCAGATGGCTAGGGTTTGG 59.559 50.000 0.00 0.00 0.00 3.28
137 143 3.853355 AGATCAGATGGCTAGGGTTTG 57.147 47.619 0.00 0.00 0.00 2.93
149 155 8.226819 TCTAACACGTTAGATCAAGATCAGAT 57.773 34.615 14.23 0.00 44.58 2.90
195 201 5.395642 CAACGGCCAAAATCTAAACGTATT 58.604 37.500 2.24 0.00 32.35 1.89
224 230 1.957668 AACACGTAACCACCAGTTCC 58.042 50.000 0.00 0.00 40.05 3.62
225 231 5.678132 AATTAACACGTAACCACCAGTTC 57.322 39.130 0.00 0.00 40.05 3.01
247 253 8.961634 TGATTCATCGGTACCAATTCAAAATAA 58.038 29.630 13.54 0.00 0.00 1.40
267 273 3.377485 GCTACGTGGTAGTCTCTGATTCA 59.623 47.826 0.00 0.00 38.30 2.57
282 288 2.684001 TGGATAAGGTTGGCTACGTG 57.316 50.000 0.00 0.00 0.00 4.49
301 307 9.308000 TGACCAAACTGTTCTGGATAATATTTT 57.692 29.630 20.84 0.00 36.49 1.82
309 315 6.484364 AAATTTGACCAAACTGTTCTGGAT 57.516 33.333 20.84 10.39 36.49 3.41
335 341 7.196331 GTCTTTTCTGCAAAACTGTCAGTTAT 58.804 34.615 18.45 6.62 37.47 1.89
345 351 6.338146 AGTTTTAGGGTCTTTTCTGCAAAAC 58.662 36.000 0.00 0.00 35.76 2.43
389 395 9.905713 TCAGCTAATTTTGGACTTGTAGATAAT 57.094 29.630 0.00 0.00 0.00 1.28
410 416 6.676213 GCTTCATTTTGCAAAAAGTTTCAGCT 60.676 34.615 27.10 5.91 0.00 4.24
412 418 6.778108 AGCTTCATTTTGCAAAAAGTTTCAG 58.222 32.000 27.10 17.05 0.00 3.02
423 429 4.540359 ATTGCCTAAGCTTCATTTTGCA 57.460 36.364 0.00 1.17 40.80 4.08
441 447 1.202143 GCCGCCGGAGAAAGTTTATTG 60.202 52.381 7.68 0.00 0.00 1.90
479 485 5.512942 TCAGGTCCTTACATTGAAATGGA 57.487 39.130 7.87 0.00 40.70 3.41
480 486 6.153340 ACATTCAGGTCCTTACATTGAAATGG 59.847 38.462 7.87 0.00 40.70 3.16
481 487 7.161773 ACATTCAGGTCCTTACATTGAAATG 57.838 36.000 1.45 1.45 42.10 2.32
482 488 9.479549 AATACATTCAGGTCCTTACATTGAAAT 57.520 29.630 0.00 0.00 35.61 2.17
485 491 6.318648 GCAATACATTCAGGTCCTTACATTGA 59.681 38.462 0.00 0.00 0.00 2.57
486 492 6.319658 AGCAATACATTCAGGTCCTTACATTG 59.680 38.462 0.00 0.00 0.00 2.82
488 494 6.006275 AGCAATACATTCAGGTCCTTACAT 57.994 37.500 0.00 0.00 0.00 2.29
489 495 5.435686 AGCAATACATTCAGGTCCTTACA 57.564 39.130 0.00 0.00 0.00 2.41
526 556 0.243636 CCCGGCCAAACAGTGAAATC 59.756 55.000 2.24 0.00 0.00 2.17
546 576 0.937304 GCAAACACGCAGAAGACTGA 59.063 50.000 0.00 0.00 46.03 3.41
600 637 2.724690 CACGTCGTCTTGTTTCTTCGAT 59.275 45.455 0.00 0.00 33.35 3.59
610 647 3.041940 GTGGGCCACGTCGTCTTG 61.042 66.667 22.83 0.00 0.00 3.02
640 679 7.813852 AAGCTAGTCAAGTATAAACGACAAG 57.186 36.000 0.00 0.00 0.00 3.16
714 754 0.823356 TGCCCTGTTCTTGACTTGGC 60.823 55.000 0.00 0.00 42.40 4.52
716 756 1.542915 CCATGCCCTGTTCTTGACTTG 59.457 52.381 0.00 0.00 0.00 3.16
728 770 2.589610 TAGTCTCCGCTCCATGCCCT 62.590 60.000 0.00 0.00 38.78 5.19
826 873 4.081309 ACAAAGCCCGCTTTATCTACAGTA 60.081 41.667 14.01 0.00 43.56 2.74
827 874 3.270877 CAAAGCCCGCTTTATCTACAGT 58.729 45.455 14.01 0.00 43.56 3.55
888 945 1.917303 CAGGTGTGCAAAAACGAACAC 59.083 47.619 0.00 0.00 41.71 3.32
929 988 7.015974 ACACATCCTTCTTCTCTGATGCATATA 59.984 37.037 0.00 0.00 38.49 0.86
930 989 6.183361 ACACATCCTTCTTCTCTGATGCATAT 60.183 38.462 0.00 0.00 38.49 1.78
931 990 5.129980 ACACATCCTTCTTCTCTGATGCATA 59.870 40.000 0.00 0.00 38.49 3.14
932 991 4.080469 ACACATCCTTCTTCTCTGATGCAT 60.080 41.667 0.00 0.00 38.49 3.96
937 996 4.344968 TGAACACACATCCTTCTTCTCTGA 59.655 41.667 0.00 0.00 0.00 3.27
949 1008 4.489810 AGAAGACGAGATGAACACACATC 58.510 43.478 0.00 0.00 44.65 3.06
952 1011 3.057174 AGGAGAAGACGAGATGAACACAC 60.057 47.826 0.00 0.00 0.00 3.82
1082 1163 1.573436 GCACTGCTGTCTGCTGAAC 59.427 57.895 14.17 3.57 42.27 3.18
1362 1455 2.805295 CGTGTTGTAGGCAAGGTTGAGA 60.805 50.000 0.00 0.00 34.94 3.27
1376 1469 1.589803 GGAGCTGGTAAACGTGTTGT 58.410 50.000 0.00 0.00 0.00 3.32
1420 1513 2.143925 GTAGGTCAGTTGTGTCAAGCC 58.856 52.381 0.00 0.00 0.00 4.35
1454 1547 4.156739 GGACCTGAAAATAGAAGTTGCAGG 59.843 45.833 11.65 11.65 45.19 4.85
1455 1548 4.156739 GGGACCTGAAAATAGAAGTTGCAG 59.843 45.833 0.00 0.00 0.00 4.41
1464 1557 3.887621 TCGAGTGGGACCTGAAAATAG 57.112 47.619 0.00 0.00 0.00 1.73
1465 1558 5.839063 AGATATCGAGTGGGACCTGAAAATA 59.161 40.000 0.00 0.00 0.00 1.40
1480 1573 2.034685 TGGTGAGCCGAAAGATATCGAG 59.965 50.000 0.00 0.00 45.48 4.04
1511 1604 2.204461 TTGCGTCCAAGGTCGAGGA 61.204 57.895 9.84 0.00 0.00 3.71
1525 1618 1.817099 GGAGCTCCCATCTGTTGCG 60.817 63.158 23.19 0.00 34.14 4.85
1526 1619 0.034670 AAGGAGCTCCCATCTGTTGC 60.035 55.000 29.54 0.00 37.41 4.17
1544 1643 1.582968 GCCACTACAGTCGACGGAA 59.417 57.895 22.71 4.69 0.00 4.30
1554 1653 1.274167 CTAAGGTCGTTGGCCACTACA 59.726 52.381 3.88 0.00 0.00 2.74
1555 1654 1.274447 ACTAAGGTCGTTGGCCACTAC 59.726 52.381 3.88 0.00 0.00 2.73
1565 1664 3.428532 TCCTTCAGCTTACTAAGGTCGT 58.571 45.455 11.66 0.00 40.58 4.34
1623 1722 1.302511 TGCCTTGAAGAACTCCGGC 60.303 57.895 0.00 0.00 39.12 6.13
1678 1777 3.270877 CAGAAAGGGAACATCCGGTTAG 58.729 50.000 0.00 0.00 40.63 2.34
1682 1781 0.328258 ACCAGAAAGGGAACATCCGG 59.672 55.000 0.00 0.00 43.89 5.14
1690 1789 0.104672 TGGAGTGGACCAGAAAGGGA 60.105 55.000 0.00 0.00 43.89 4.20
1716 1815 6.210078 CGATAAGGAGTGGAGTCTTGATAAC 58.790 44.000 0.00 0.00 0.00 1.89
1770 1869 1.067295 ACAAATCAGGCAGAGGACCA 58.933 50.000 0.00 0.00 0.00 4.02
1796 1895 1.556451 GCAGCAAAGGGGAATTGGAAT 59.444 47.619 0.00 0.00 0.00 3.01
1805 1904 0.890996 AAGTTCTCGCAGCAAAGGGG 60.891 55.000 0.00 0.00 0.00 4.79
1835 1934 2.676463 GCAGAAGGCTCGAATCTGTTCT 60.676 50.000 13.79 4.85 42.00 3.01
1836 1935 1.663135 GCAGAAGGCTCGAATCTGTTC 59.337 52.381 13.79 0.00 42.00 3.18
1870 1969 4.207891 TGAGATTCTTTAGCCCAGTGAC 57.792 45.455 0.00 0.00 0.00 3.67
1981 2080 2.347490 GCCGGAGAAGCTGTTCCA 59.653 61.111 5.05 0.00 32.48 3.53
2053 2152 1.973812 GCCCAGACAAACCAGAGCC 60.974 63.158 0.00 0.00 0.00 4.70
2094 2193 3.250040 GCCATACACTTTCAAGTCGTGTT 59.750 43.478 0.00 0.00 41.62 3.32
2109 2208 4.089239 TTGCCGGCGAGCCATACA 62.089 61.111 23.90 5.81 35.37 2.29
2231 2360 9.990868 ACAAATTTGATAGGTACTCCCTTTTAT 57.009 29.630 24.64 0.00 42.73 1.40
2489 3117 3.754850 TCTCCATTCAAAGATGCACACAG 59.245 43.478 0.00 0.00 0.00 3.66
2633 3265 5.130477 ACAGAGACCGGGTGTAATTGATATT 59.870 40.000 3.30 0.00 0.00 1.28
2649 3281 3.740115 ACATGTTGTTGGTACAGAGACC 58.260 45.455 0.00 0.00 42.39 3.85
2651 3283 3.389656 TGGACATGTTGTTGGTACAGAGA 59.610 43.478 0.00 0.00 42.39 3.10
2652 3284 3.738982 TGGACATGTTGTTGGTACAGAG 58.261 45.455 0.00 0.00 42.39 3.35
2653 3285 3.847671 TGGACATGTTGTTGGTACAGA 57.152 42.857 0.00 0.00 42.39 3.41
2657 3289 4.527944 TGTCTTTGGACATGTTGTTGGTA 58.472 39.130 0.00 0.00 46.19 3.25
2674 3306 1.000843 TGTGTGCATCGTAGCTGTCTT 59.999 47.619 0.00 0.00 34.99 3.01
2675 3307 0.603065 TGTGTGCATCGTAGCTGTCT 59.397 50.000 0.00 0.00 34.99 3.41
2676 3308 1.126846 GTTGTGTGCATCGTAGCTGTC 59.873 52.381 0.00 0.00 34.99 3.51
2677 3309 1.148310 GTTGTGTGCATCGTAGCTGT 58.852 50.000 0.00 0.00 34.99 4.40
2678 3310 0.443869 GGTTGTGTGCATCGTAGCTG 59.556 55.000 0.00 0.00 34.99 4.24
2679 3311 0.034756 TGGTTGTGTGCATCGTAGCT 59.965 50.000 0.00 0.00 34.99 3.32
2680 3312 0.871722 TTGGTTGTGTGCATCGTAGC 59.128 50.000 0.00 0.00 0.00 3.58
2681 3313 2.412870 TCTTGGTTGTGTGCATCGTAG 58.587 47.619 0.00 0.00 0.00 3.51
2682 3314 2.535012 TCTTGGTTGTGTGCATCGTA 57.465 45.000 0.00 0.00 0.00 3.43
2683 3315 1.674359 TTCTTGGTTGTGTGCATCGT 58.326 45.000 0.00 0.00 0.00 3.73
2684 3316 2.772568 TTTCTTGGTTGTGTGCATCG 57.227 45.000 0.00 0.00 0.00 3.84
2922 3559 2.989840 GTCGTTGAACTCTCTGGATGTG 59.010 50.000 0.00 0.00 0.00 3.21
2944 3581 1.212935 CAGGGTAGCTTGGCCTATGTT 59.787 52.381 3.32 0.00 0.00 2.71
3062 3739 8.088365 GCCCTGTAGAAGAAAATTGTGTTAATT 58.912 33.333 0.00 0.00 0.00 1.40
3304 3985 2.443255 AGGAAAAGGAAGCTGGAACTGA 59.557 45.455 0.00 0.00 0.00 3.41
3313 3994 3.625313 GCAGTGAGATAGGAAAAGGAAGC 59.375 47.826 0.00 0.00 0.00 3.86
3418 4099 0.256464 CTCACCTAGACGGAGGGAGT 59.744 60.000 5.42 0.00 41.36 3.85
3419 4100 0.256464 ACTCACCTAGACGGAGGGAG 59.744 60.000 12.80 12.80 41.36 4.30
3420 4101 0.255318 GACTCACCTAGACGGAGGGA 59.745 60.000 5.42 0.16 41.36 4.20
3421 4102 0.034380 TGACTCACCTAGACGGAGGG 60.034 60.000 5.42 0.00 41.36 4.30
3422 4103 1.340211 ACTGACTCACCTAGACGGAGG 60.340 57.143 0.00 0.00 42.89 4.30
3423 4104 2.011222 GACTGACTCACCTAGACGGAG 58.989 57.143 0.00 0.00 36.31 4.63
3424 4105 1.350019 TGACTGACTCACCTAGACGGA 59.650 52.381 0.00 0.00 36.31 4.69
3425 4106 1.822506 TGACTGACTCACCTAGACGG 58.177 55.000 0.00 0.00 39.35 4.79
3426 4107 3.275143 AGATGACTGACTCACCTAGACG 58.725 50.000 0.00 0.00 0.00 4.18
3427 4108 5.298276 CCTAAGATGACTGACTCACCTAGAC 59.702 48.000 0.00 0.00 0.00 2.59
3428 4109 5.044772 ACCTAAGATGACTGACTCACCTAGA 60.045 44.000 0.00 0.00 0.00 2.43
3429 4110 5.197451 ACCTAAGATGACTGACTCACCTAG 58.803 45.833 0.00 0.00 0.00 3.02
3430 4111 5.194473 ACCTAAGATGACTGACTCACCTA 57.806 43.478 0.00 0.00 0.00 3.08
3431 4112 4.054359 ACCTAAGATGACTGACTCACCT 57.946 45.455 0.00 0.00 0.00 4.00
3432 4113 4.021016 ACAACCTAAGATGACTGACTCACC 60.021 45.833 0.00 0.00 0.00 4.02
3433 4114 4.926238 CACAACCTAAGATGACTGACTCAC 59.074 45.833 0.00 0.00 0.00 3.51
3434 4115 4.561530 GCACAACCTAAGATGACTGACTCA 60.562 45.833 0.00 0.00 0.00 3.41
3435 4116 3.929610 GCACAACCTAAGATGACTGACTC 59.070 47.826 0.00 0.00 0.00 3.36
3436 4117 3.324846 TGCACAACCTAAGATGACTGACT 59.675 43.478 0.00 0.00 0.00 3.41
3437 4118 3.433615 GTGCACAACCTAAGATGACTGAC 59.566 47.826 13.17 0.00 0.00 3.51
3438 4119 3.557054 GGTGCACAACCTAAGATGACTGA 60.557 47.826 20.43 0.00 46.55 3.41
3439 4120 2.744202 GGTGCACAACCTAAGATGACTG 59.256 50.000 20.43 0.00 46.55 3.51
3440 4121 3.059352 GGTGCACAACCTAAGATGACT 57.941 47.619 20.43 0.00 46.55 3.41
3450 4131 0.238289 CTTGATCACGGTGCACAACC 59.762 55.000 20.43 0.00 46.60 3.77
3451 4132 0.238289 CCTTGATCACGGTGCACAAC 59.762 55.000 20.43 0.40 0.00 3.32
3452 4133 0.107643 TCCTTGATCACGGTGCACAA 59.892 50.000 20.43 10.69 0.00 3.33
3453 4134 0.320683 CTCCTTGATCACGGTGCACA 60.321 55.000 20.43 0.00 0.00 4.57
3454 4135 1.021390 CCTCCTTGATCACGGTGCAC 61.021 60.000 17.16 8.80 0.00 4.57
3455 4136 1.191489 TCCTCCTTGATCACGGTGCA 61.191 55.000 17.16 0.00 0.00 4.57
3456 4137 0.460987 CTCCTCCTTGATCACGGTGC 60.461 60.000 17.16 0.00 0.00 5.01
3457 4138 0.176680 CCTCCTCCTTGATCACGGTG 59.823 60.000 17.16 14.55 0.00 4.94
3458 4139 0.978146 CCCTCCTCCTTGATCACGGT 60.978 60.000 17.16 0.00 0.00 4.83
3459 4140 1.690219 CCCCTCCTCCTTGATCACGG 61.690 65.000 12.01 12.01 0.00 4.94
3460 4141 0.687757 TCCCCTCCTCCTTGATCACG 60.688 60.000 0.00 0.00 0.00 4.35
3461 4142 1.584724 TTCCCCTCCTCCTTGATCAC 58.415 55.000 0.00 0.00 0.00 3.06
3462 4143 2.359376 TTTCCCCTCCTCCTTGATCA 57.641 50.000 0.00 0.00 0.00 2.92
3463 4144 3.961484 ATTTTCCCCTCCTCCTTGATC 57.039 47.619 0.00 0.00 0.00 2.92
3464 4145 5.046522 TCTTATTTTCCCCTCCTCCTTGAT 58.953 41.667 0.00 0.00 0.00 2.57
3465 4146 4.444611 TCTTATTTTCCCCTCCTCCTTGA 58.555 43.478 0.00 0.00 0.00 3.02
3466 4147 4.475016 TCTCTTATTTTCCCCTCCTCCTTG 59.525 45.833 0.00 0.00 0.00 3.61
3467 4148 4.475381 GTCTCTTATTTTCCCCTCCTCCTT 59.525 45.833 0.00 0.00 0.00 3.36
3468 4149 4.041464 GTCTCTTATTTTCCCCTCCTCCT 58.959 47.826 0.00 0.00 0.00 3.69
3469 4150 4.041464 AGTCTCTTATTTTCCCCTCCTCC 58.959 47.826 0.00 0.00 0.00 4.30
3470 4151 5.702065 AAGTCTCTTATTTTCCCCTCCTC 57.298 43.478 0.00 0.00 0.00 3.71
3471 4152 7.584396 TTAAAGTCTCTTATTTTCCCCTCCT 57.416 36.000 0.00 0.00 0.00 3.69
3472 4153 7.834681 ACATTAAAGTCTCTTATTTTCCCCTCC 59.165 37.037 0.00 0.00 0.00 4.30
3473 4154 8.809468 ACATTAAAGTCTCTTATTTTCCCCTC 57.191 34.615 0.00 0.00 0.00 4.30
3474 4155 9.601810 AAACATTAAAGTCTCTTATTTTCCCCT 57.398 29.630 0.00 0.00 0.00 4.79
3518 4199 5.583061 CAGTGGTTAATTCATTGCATGCAAT 59.417 36.000 34.78 34.78 46.35 3.56
3519 4200 4.930405 CAGTGGTTAATTCATTGCATGCAA 59.070 37.500 33.57 33.57 40.47 4.08
3520 4201 4.496360 CAGTGGTTAATTCATTGCATGCA 58.504 39.130 18.46 18.46 0.00 3.96
3521 4202 3.307782 GCAGTGGTTAATTCATTGCATGC 59.692 43.478 11.82 11.82 44.01 4.06
3525 4206 4.497300 ACATGCAGTGGTTAATTCATTGC 58.503 39.130 16.59 16.59 44.56 3.56
3526 4207 5.712004 TGACATGCAGTGGTTAATTCATTG 58.288 37.500 0.00 1.69 0.00 2.82
3527 4208 5.981088 TGACATGCAGTGGTTAATTCATT 57.019 34.783 0.00 0.00 0.00 2.57
3528 4209 5.419788 ACATGACATGCAGTGGTTAATTCAT 59.580 36.000 15.49 0.00 0.00 2.57
3529 4210 4.766373 ACATGACATGCAGTGGTTAATTCA 59.234 37.500 15.49 0.00 0.00 2.57
3530 4211 5.314923 ACATGACATGCAGTGGTTAATTC 57.685 39.130 15.49 0.00 0.00 2.17
3531 4212 5.726980 AACATGACATGCAGTGGTTAATT 57.273 34.783 15.49 0.00 0.00 1.40
3532 4213 5.472148 CAAACATGACATGCAGTGGTTAAT 58.528 37.500 15.49 0.00 0.00 1.40
3533 4214 4.261952 CCAAACATGACATGCAGTGGTTAA 60.262 41.667 15.49 0.00 0.00 2.01
3534 4215 3.255395 CCAAACATGACATGCAGTGGTTA 59.745 43.478 15.49 0.00 0.00 2.85
3535 4216 2.036217 CCAAACATGACATGCAGTGGTT 59.964 45.455 15.49 0.00 0.00 3.67
3536 4217 1.614903 CCAAACATGACATGCAGTGGT 59.385 47.619 15.49 0.00 0.00 4.16
3537 4218 1.614903 ACCAAACATGACATGCAGTGG 59.385 47.619 22.15 22.15 35.82 4.00
3538 4219 3.503363 ACTACCAAACATGACATGCAGTG 59.497 43.478 15.49 10.34 0.00 3.66
3539 4220 3.753272 GACTACCAAACATGACATGCAGT 59.247 43.478 15.49 9.80 0.00 4.40
3540 4221 4.005650 AGACTACCAAACATGACATGCAG 58.994 43.478 15.49 5.48 0.00 4.41
3541 4222 4.002982 GAGACTACCAAACATGACATGCA 58.997 43.478 15.49 0.00 0.00 3.96
3542 4223 4.002982 TGAGACTACCAAACATGACATGC 58.997 43.478 15.49 0.00 0.00 4.06
3543 4224 5.934043 TCTTGAGACTACCAAACATGACATG 59.066 40.000 14.02 14.02 0.00 3.21
3544 4225 5.934625 GTCTTGAGACTACCAAACATGACAT 59.065 40.000 0.00 0.00 41.65 3.06
3545 4226 5.163353 TGTCTTGAGACTACCAAACATGACA 60.163 40.000 12.00 0.00 44.99 3.58
3546 4227 5.297547 TGTCTTGAGACTACCAAACATGAC 58.702 41.667 12.00 0.00 44.99 3.06
3547 4228 5.545063 TGTCTTGAGACTACCAAACATGA 57.455 39.130 12.00 0.00 44.99 3.07
3548 4229 6.808008 AATGTCTTGAGACTACCAAACATG 57.192 37.500 12.00 0.00 44.99 3.21
3549 4230 8.918202 TTTAATGTCTTGAGACTACCAAACAT 57.082 30.769 12.00 0.00 44.99 2.71
3550 4231 8.208224 TCTTTAATGTCTTGAGACTACCAAACA 58.792 33.333 12.00 0.00 44.99 2.83
3551 4232 8.496751 GTCTTTAATGTCTTGAGACTACCAAAC 58.503 37.037 12.00 0.68 44.99 2.93
3552 4233 7.384115 CGTCTTTAATGTCTTGAGACTACCAAA 59.616 37.037 12.00 6.64 44.99 3.28
3553 4234 6.866770 CGTCTTTAATGTCTTGAGACTACCAA 59.133 38.462 12.00 1.01 44.99 3.67
3554 4235 6.015688 ACGTCTTTAATGTCTTGAGACTACCA 60.016 38.462 12.00 0.00 44.99 3.25
3555 4236 6.388278 ACGTCTTTAATGTCTTGAGACTACC 58.612 40.000 12.00 0.00 44.99 3.18
3556 4237 8.449397 TCTACGTCTTTAATGTCTTGAGACTAC 58.551 37.037 12.00 0.27 44.99 2.73
3557 4238 8.449397 GTCTACGTCTTTAATGTCTTGAGACTA 58.551 37.037 12.00 0.26 44.99 2.59
3558 4239 7.040617 TGTCTACGTCTTTAATGTCTTGAGACT 60.041 37.037 12.00 0.00 44.99 3.24
3559 4240 7.060864 GTGTCTACGTCTTTAATGTCTTGAGAC 59.939 40.741 4.20 4.20 44.97 3.36
3560 4241 7.082602 GTGTCTACGTCTTTAATGTCTTGAGA 58.917 38.462 0.00 0.00 0.00 3.27
3561 4242 6.308282 GGTGTCTACGTCTTTAATGTCTTGAG 59.692 42.308 0.00 0.00 0.00 3.02
3562 4243 6.015688 AGGTGTCTACGTCTTTAATGTCTTGA 60.016 38.462 0.00 0.00 0.00 3.02
3563 4244 6.157211 AGGTGTCTACGTCTTTAATGTCTTG 58.843 40.000 0.00 0.00 0.00 3.02
3564 4245 6.208994 AGAGGTGTCTACGTCTTTAATGTCTT 59.791 38.462 0.00 0.00 46.71 3.01
3565 4246 5.711036 AGAGGTGTCTACGTCTTTAATGTCT 59.289 40.000 0.00 0.00 46.71 3.41
3566 4247 5.952033 AGAGGTGTCTACGTCTTTAATGTC 58.048 41.667 0.00 0.00 46.71 3.06
3567 4248 5.979288 AGAGGTGTCTACGTCTTTAATGT 57.021 39.130 0.00 0.00 46.71 2.71
3575 4256 3.537580 AGAGATGAGAGGTGTCTACGTC 58.462 50.000 0.00 0.00 40.96 4.34
3576 4257 3.055021 TGAGAGATGAGAGGTGTCTACGT 60.055 47.826 0.00 0.00 30.97 3.57
3577 4258 3.536570 TGAGAGATGAGAGGTGTCTACG 58.463 50.000 0.00 0.00 30.97 3.51
3578 4259 5.221224 CCAATGAGAGATGAGAGGTGTCTAC 60.221 48.000 0.00 0.00 30.97 2.59
3579 4260 4.892345 CCAATGAGAGATGAGAGGTGTCTA 59.108 45.833 0.00 0.00 30.97 2.59
3580 4261 3.705579 CCAATGAGAGATGAGAGGTGTCT 59.294 47.826 0.00 0.00 34.86 3.41
3581 4262 3.450457 ACCAATGAGAGATGAGAGGTGTC 59.550 47.826 0.00 0.00 0.00 3.67
3582 4263 3.448934 ACCAATGAGAGATGAGAGGTGT 58.551 45.455 0.00 0.00 0.00 4.16
3583 4264 4.081254 TCAACCAATGAGAGATGAGAGGTG 60.081 45.833 0.00 0.00 33.04 4.00
3584 4265 4.099633 TCAACCAATGAGAGATGAGAGGT 58.900 43.478 0.00 0.00 33.04 3.85
3585 4266 4.750021 TCAACCAATGAGAGATGAGAGG 57.250 45.455 0.00 0.00 33.04 3.69
3586 4267 6.369340 GCATATCAACCAATGAGAGATGAGAG 59.631 42.308 0.00 0.00 42.53 3.20
3587 4268 6.228995 GCATATCAACCAATGAGAGATGAGA 58.771 40.000 0.00 0.00 42.53 3.27
3588 4269 5.411977 GGCATATCAACCAATGAGAGATGAG 59.588 44.000 0.00 0.00 42.53 2.90
3589 4270 5.163174 TGGCATATCAACCAATGAGAGATGA 60.163 40.000 0.00 0.00 42.53 2.92
3590 4271 5.067954 TGGCATATCAACCAATGAGAGATG 58.932 41.667 0.00 0.00 42.53 2.90
3591 4272 5.314718 TGGCATATCAACCAATGAGAGAT 57.685 39.130 0.00 0.00 42.53 2.75
3592 4273 4.776435 TGGCATATCAACCAATGAGAGA 57.224 40.909 0.00 0.00 42.53 3.10
3593 4274 5.840243 TTTGGCATATCAACCAATGAGAG 57.160 39.130 0.00 0.00 45.08 3.20
3594 4275 6.602410 TTTTTGGCATATCAACCAATGAGA 57.398 33.333 0.00 0.00 45.08 3.27
3621 4302 7.116805 CGGTACATTAACTTCTACCTCGTTTTT 59.883 37.037 0.00 0.00 0.00 1.94
3622 4303 6.587608 CGGTACATTAACTTCTACCTCGTTTT 59.412 38.462 0.00 0.00 0.00 2.43
3623 4304 6.095377 CGGTACATTAACTTCTACCTCGTTT 58.905 40.000 0.00 0.00 0.00 3.60
3624 4305 5.644644 CGGTACATTAACTTCTACCTCGTT 58.355 41.667 0.00 0.00 0.00 3.85
3625 4306 4.439289 GCGGTACATTAACTTCTACCTCGT 60.439 45.833 0.00 0.00 0.00 4.18
3626 4307 4.040376 GCGGTACATTAACTTCTACCTCG 58.960 47.826 0.00 0.00 0.00 4.63
3627 4308 4.040376 CGCGGTACATTAACTTCTACCTC 58.960 47.826 0.00 0.00 0.00 3.85
3628 4309 3.736126 GCGCGGTACATTAACTTCTACCT 60.736 47.826 8.83 0.00 0.00 3.08
3629 4310 2.537214 GCGCGGTACATTAACTTCTACC 59.463 50.000 8.83 0.00 0.00 3.18
3630 4311 2.537214 GGCGCGGTACATTAACTTCTAC 59.463 50.000 8.83 0.00 0.00 2.59
3631 4312 2.428171 AGGCGCGGTACATTAACTTCTA 59.572 45.455 8.83 0.00 0.00 2.10
3632 4313 1.206371 AGGCGCGGTACATTAACTTCT 59.794 47.619 8.83 0.00 0.00 2.85
3633 4314 1.648504 AGGCGCGGTACATTAACTTC 58.351 50.000 8.83 0.00 0.00 3.01
3634 4315 2.965572 TAGGCGCGGTACATTAACTT 57.034 45.000 8.83 0.00 0.00 2.66
3635 4316 2.167075 ACTTAGGCGCGGTACATTAACT 59.833 45.455 8.83 0.00 0.00 2.24
3636 4317 2.283351 CACTTAGGCGCGGTACATTAAC 59.717 50.000 8.83 0.00 0.00 2.01
3637 4318 2.094078 ACACTTAGGCGCGGTACATTAA 60.094 45.455 8.83 0.00 0.00 1.40
3638 4319 1.477700 ACACTTAGGCGCGGTACATTA 59.522 47.619 8.83 0.00 0.00 1.90
3639 4320 0.248289 ACACTTAGGCGCGGTACATT 59.752 50.000 8.83 0.00 0.00 2.71
3640 4321 0.248289 AACACTTAGGCGCGGTACAT 59.752 50.000 8.83 0.00 0.00 2.29
3641 4322 0.033781 AAACACTTAGGCGCGGTACA 59.966 50.000 8.83 0.00 0.00 2.90
3642 4323 1.136169 CAAAACACTTAGGCGCGGTAC 60.136 52.381 8.83 0.00 0.00 3.34
3643 4324 1.149987 CAAAACACTTAGGCGCGGTA 58.850 50.000 8.83 0.00 0.00 4.02
3644 4325 1.512156 CCAAAACACTTAGGCGCGGT 61.512 55.000 8.83 0.00 0.00 5.68
3645 4326 1.209127 CCAAAACACTTAGGCGCGG 59.791 57.895 8.83 0.00 0.00 6.46
3646 4327 1.209127 CCCAAAACACTTAGGCGCG 59.791 57.895 0.00 0.00 0.00 6.86
3647 4328 1.173913 ATCCCAAAACACTTAGGCGC 58.826 50.000 0.00 0.00 0.00 6.53
3648 4329 5.576447 AATAATCCCAAAACACTTAGGCG 57.424 39.130 0.00 0.00 0.00 5.52
3649 4330 8.063200 ACTAAATAATCCCAAAACACTTAGGC 57.937 34.615 0.00 0.00 0.00 3.93
3653 4334 9.471084 CGAAAACTAAATAATCCCAAAACACTT 57.529 29.630 0.00 0.00 0.00 3.16
3654 4335 8.635328 ACGAAAACTAAATAATCCCAAAACACT 58.365 29.630 0.00 0.00 0.00 3.55
3655 4336 8.806177 ACGAAAACTAAATAATCCCAAAACAC 57.194 30.769 0.00 0.00 0.00 3.32
3661 4342 9.893634 TCATCTTACGAAAACTAAATAATCCCA 57.106 29.630 0.00 0.00 0.00 4.37
3671 4352 9.793252 GGTGTATAAGTCATCTTACGAAAACTA 57.207 33.333 0.00 0.00 38.71 2.24
3672 4353 8.529476 AGGTGTATAAGTCATCTTACGAAAACT 58.471 33.333 0.00 0.00 38.71 2.66
3673 4354 8.699283 AGGTGTATAAGTCATCTTACGAAAAC 57.301 34.615 0.00 0.00 38.71 2.43
3675 4356 9.399797 TCTAGGTGTATAAGTCATCTTACGAAA 57.600 33.333 0.00 0.00 38.71 3.46
3676 4357 8.834465 GTCTAGGTGTATAAGTCATCTTACGAA 58.166 37.037 0.00 0.00 38.71 3.85
3677 4358 7.170489 CGTCTAGGTGTATAAGTCATCTTACGA 59.830 40.741 0.00 0.00 38.71 3.43
3678 4359 7.289395 CGTCTAGGTGTATAAGTCATCTTACG 58.711 42.308 0.00 0.00 38.71 3.18
3679 4360 7.443575 TCCGTCTAGGTGTATAAGTCATCTTAC 59.556 40.741 0.00 0.00 38.80 2.34
3680 4361 7.512130 TCCGTCTAGGTGTATAAGTCATCTTA 58.488 38.462 0.00 0.00 41.99 2.10
3681 4362 6.363065 TCCGTCTAGGTGTATAAGTCATCTT 58.637 40.000 0.00 0.00 41.99 2.40
3682 4363 5.938279 TCCGTCTAGGTGTATAAGTCATCT 58.062 41.667 0.00 0.00 41.99 2.90
3683 4364 5.181622 CCTCCGTCTAGGTGTATAAGTCATC 59.818 48.000 0.00 0.00 41.99 2.92
3684 4365 5.071370 CCTCCGTCTAGGTGTATAAGTCAT 58.929 45.833 0.00 0.00 41.99 3.06
3685 4366 4.458397 CCTCCGTCTAGGTGTATAAGTCA 58.542 47.826 0.00 0.00 41.99 3.41
3686 4367 3.819902 CCCTCCGTCTAGGTGTATAAGTC 59.180 52.174 0.00 0.00 41.99 3.01
3687 4368 3.461085 TCCCTCCGTCTAGGTGTATAAGT 59.539 47.826 0.00 0.00 41.99 2.24
3688 4369 4.073549 CTCCCTCCGTCTAGGTGTATAAG 58.926 52.174 0.00 0.00 41.99 1.73
3689 4370 3.461085 ACTCCCTCCGTCTAGGTGTATAA 59.539 47.826 0.00 0.00 41.99 0.98
3690 4371 3.051581 ACTCCCTCCGTCTAGGTGTATA 58.948 50.000 0.00 0.00 41.99 1.47
3691 4372 1.851653 ACTCCCTCCGTCTAGGTGTAT 59.148 52.381 0.00 0.00 41.99 2.29
3692 4373 1.293062 ACTCCCTCCGTCTAGGTGTA 58.707 55.000 0.00 0.00 41.99 2.90
3693 4374 1.293062 TACTCCCTCCGTCTAGGTGT 58.707 55.000 0.00 0.00 41.99 4.16
3694 4375 2.158652 TCATACTCCCTCCGTCTAGGTG 60.159 54.545 0.00 0.00 41.99 4.00
3695 4376 2.133520 TCATACTCCCTCCGTCTAGGT 58.866 52.381 0.00 0.00 41.99 3.08
3696 4377 2.953284 TCATACTCCCTCCGTCTAGG 57.047 55.000 0.00 0.00 42.97 3.02
3697 4378 5.746284 TGATATCATACTCCCTCCGTCTAG 58.254 45.833 0.00 0.00 0.00 2.43
3698 4379 5.746284 CTGATATCATACTCCCTCCGTCTA 58.254 45.833 5.72 0.00 0.00 2.59
3699 4380 4.594970 CTGATATCATACTCCCTCCGTCT 58.405 47.826 5.72 0.00 0.00 4.18
3700 4381 3.129638 GCTGATATCATACTCCCTCCGTC 59.870 52.174 5.72 0.00 0.00 4.79
3701 4382 3.093057 GCTGATATCATACTCCCTCCGT 58.907 50.000 5.72 0.00 0.00 4.69
3702 4383 2.428890 GGCTGATATCATACTCCCTCCG 59.571 54.545 5.72 0.00 0.00 4.63
3703 4384 3.704061 GAGGCTGATATCATACTCCCTCC 59.296 52.174 18.94 7.15 33.27 4.30
3704 4385 3.704061 GGAGGCTGATATCATACTCCCTC 59.296 52.174 28.82 23.58 40.15 4.30
3705 4386 3.339436 AGGAGGCTGATATCATACTCCCT 59.661 47.826 32.04 23.20 43.70 4.20
3706 4387 3.718723 AGGAGGCTGATATCATACTCCC 58.281 50.000 32.04 22.07 43.70 4.30
3707 4388 7.014808 GGTTATAGGAGGCTGATATCATACTCC 59.985 44.444 30.36 30.36 43.33 3.85
3708 4389 7.014808 GGGTTATAGGAGGCTGATATCATACTC 59.985 44.444 20.45 20.45 0.00 2.59
3709 4390 6.841755 GGGTTATAGGAGGCTGATATCATACT 59.158 42.308 5.72 7.41 0.00 2.12
3710 4391 6.611642 TGGGTTATAGGAGGCTGATATCATAC 59.388 42.308 5.72 2.31 0.00 2.39
3711 4392 6.752091 TGGGTTATAGGAGGCTGATATCATA 58.248 40.000 5.72 0.00 0.00 2.15
3802 4483 7.653713 CCTTGTTAGGTTACAGTATGCTAGATG 59.346 40.741 0.00 0.00 36.70 2.90
3855 4536 6.894682 AGAGAGATCCAAATCTTTTACTCCC 58.105 40.000 0.00 0.00 42.46 4.30
3857 4538 6.989759 GGGAGAGAGATCCAAATCTTTTACTC 59.010 42.308 0.00 0.00 42.46 2.59
3859 4540 6.653989 TGGGAGAGAGATCCAAATCTTTTAC 58.346 40.000 0.00 0.00 42.46 2.01
3862 4543 5.786121 TTGGGAGAGAGATCCAAATCTTT 57.214 39.130 0.00 0.00 42.46 2.52
3932 4613 5.684704 AGTGGTTGTGAGAGAGATTCAAAA 58.315 37.500 0.00 0.00 0.00 2.44
3933 4614 5.296151 AGTGGTTGTGAGAGAGATTCAAA 57.704 39.130 0.00 0.00 0.00 2.69
3939 4620 2.365617 GGTGAAGTGGTTGTGAGAGAGA 59.634 50.000 0.00 0.00 0.00 3.10
3994 4675 5.801350 TTGAAGCTAAGATTGATGAACCG 57.199 39.130 0.00 0.00 0.00 4.44
4003 4687 5.468072 CACCGAGCATATTGAAGCTAAGATT 59.532 40.000 0.00 0.00 42.04 2.40
4044 4728 2.152699 AAGATCGTGCGCGTCGAAG 61.153 57.895 25.68 6.99 40.61 3.79
4054 4738 6.330278 TGTTATTGGAGTAGTCAAGATCGTG 58.670 40.000 1.76 1.76 0.00 4.35
4074 4758 5.252863 TGGAGGGATGGAAGAGAATTTGTTA 59.747 40.000 0.00 0.00 0.00 2.41
4194 4908 3.637229 GGTCGAGTATTTGGAGAGGATCA 59.363 47.826 0.00 0.00 37.82 2.92
4195 4909 3.892588 AGGTCGAGTATTTGGAGAGGATC 59.107 47.826 0.00 0.00 0.00 3.36
4388 5105 1.342819 GAGCTAATGATCTCGGCAGGT 59.657 52.381 0.00 0.00 0.00 4.00
4404 5121 0.038159 GCAAGTACTGACACCGAGCT 60.038 55.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.