Multiple sequence alignment - TraesCS6A01G351100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G351100 chr6A 100.000 4823 0 0 1 4823 582996854 583001676 0.000000e+00 8907.0
1 TraesCS6A01G351100 chr6A 82.944 1284 198 18 3496 4771 583010459 583011729 0.000000e+00 1138.0
2 TraesCS6A01G351100 chr6A 100.000 472 0 0 5241 5712 583002094 583002565 0.000000e+00 872.0
3 TraesCS6A01G351100 chr6A 73.522 744 128 47 654 1362 583006933 583007642 9.640000e-53 219.0
4 TraesCS6A01G351100 chr6A 80.576 139 18 7 102 233 19766841 19766705 1.310000e-16 99.0
5 TraesCS6A01G351100 chr6D 93.972 3102 110 29 1760 4823 436074384 436077446 0.000000e+00 4621.0
6 TraesCS6A01G351100 chr6D 93.170 937 44 10 605 1532 436073471 436074396 0.000000e+00 1358.0
7 TraesCS6A01G351100 chr6D 83.333 1284 193 18 3496 4771 436093872 436095142 0.000000e+00 1166.0
8 TraesCS6A01G351100 chr6D 90.618 469 40 3 1 467 436072919 436073385 2.260000e-173 619.0
9 TraesCS6A01G351100 chr6D 90.488 389 14 8 5324 5712 436077961 436078326 5.140000e-135 492.0
10 TraesCS6A01G351100 chr6D 81.452 248 25 11 652 884 436090641 436090882 3.520000e-42 183.0
11 TraesCS6A01G351100 chr6D 85.000 100 11 4 102 198 19727100 19727002 1.310000e-16 99.0
12 TraesCS6A01G351100 chr6B 84.934 1281 167 20 3501 4770 658666334 658667599 0.000000e+00 1273.0
13 TraesCS6A01G351100 chr6B 83.022 1284 197 17 3496 4771 658713133 658714403 0.000000e+00 1144.0
14 TraesCS6A01G351100 chr6B 84.299 777 112 6 2679 3451 658712348 658713118 0.000000e+00 750.0
15 TraesCS6A01G351100 chr6B 79.404 738 82 31 656 1362 658663230 658663928 1.880000e-124 457.0
16 TraesCS6A01G351100 chr2A 95.652 230 9 1 1536 1764 738725803 738726032 9.040000e-98 368.0
17 TraesCS6A01G351100 chr2A 84.211 95 15 0 5477 5571 206403581 206403487 6.090000e-15 93.5
18 TraesCS6A01G351100 chr4A 93.074 231 15 1 1536 1765 659824708 659824938 2.550000e-88 337.0
19 TraesCS6A01G351100 chr4D 91.189 227 17 3 1541 1764 120093257 120093483 7.190000e-79 305.0
20 TraesCS6A01G351100 chr4D 86.598 97 11 1 5496 5592 67113100 67113006 7.830000e-19 106.0
21 TraesCS6A01G351100 chr4D 86.735 98 9 3 5496 5592 67186147 67186241 7.830000e-19 106.0
22 TraesCS6A01G351100 chr5D 90.308 227 19 3 1541 1764 311803103 311803329 1.560000e-75 294.0
23 TraesCS6A01G351100 chr5D 86.996 223 23 5 1541 1759 472397358 472397578 4.420000e-61 246.0
24 TraesCS6A01G351100 chr5D 100.000 28 0 0 483 510 561625607 561625580 1.000000e-02 52.8
25 TraesCS6A01G351100 chr2D 90.222 225 19 3 1541 1762 405178760 405178984 2.010000e-74 291.0
26 TraesCS6A01G351100 chr2D 88.546 227 23 3 1541 1764 552117716 552117490 7.290000e-69 272.0
27 TraesCS6A01G351100 chr2D 81.148 244 35 8 3 236 22757690 22757448 9.770000e-43 185.0
28 TraesCS6A01G351100 chr2B 89.610 231 21 3 1536 1765 648368695 648368923 2.010000e-74 291.0
29 TraesCS6A01G351100 chr2B 83.740 123 15 3 121 239 361505511 361505390 1.680000e-20 111.0
30 TraesCS6A01G351100 chr7B 89.035 228 22 3 1539 1764 735014102 735013876 4.360000e-71 279.0
31 TraesCS6A01G351100 chr5A 87.952 83 10 0 5510 5592 7111424 7111342 1.310000e-16 99.0
32 TraesCS6A01G351100 chr1D 96.875 32 1 0 475 506 203751642 203751611 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G351100 chr6A 582996854 583002565 5711 False 4889.5 8907 100.0000 1 5712 2 chr6A.!!$F1 5711
1 TraesCS6A01G351100 chr6A 583006933 583011729 4796 False 678.5 1138 78.2330 654 4771 2 chr6A.!!$F2 4117
2 TraesCS6A01G351100 chr6D 436072919 436078326 5407 False 1772.5 4621 92.0620 1 5712 4 chr6D.!!$F1 5711
3 TraesCS6A01G351100 chr6D 436090641 436095142 4501 False 674.5 1166 82.3925 652 4771 2 chr6D.!!$F2 4119
4 TraesCS6A01G351100 chr6B 658712348 658714403 2055 False 947.0 1144 83.6605 2679 4771 2 chr6B.!!$F2 2092
5 TraesCS6A01G351100 chr6B 658663230 658667599 4369 False 865.0 1273 82.1690 656 4770 2 chr6B.!!$F1 4114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 572 0.037734 GGTCCATTTCGTTCCTGGGT 59.962 55.000 0.00 0.00 0.00 4.51 F
1559 2470 0.037790 GCTATGGAGAGATGCGGGAC 60.038 60.000 0.00 0.00 0.00 4.46 F
1682 2593 0.107703 CGTGGGTGTCATGTAGCCAT 60.108 55.000 20.64 0.00 46.23 4.40 F
3182 4588 0.035458 AAGGTTGCCTCGAGTCCTTG 59.965 55.000 19.91 4.87 37.17 3.61 F
3298 4704 0.464036 TGTCGCACAACCTCTTCACT 59.536 50.000 0.00 0.00 0.00 3.41 F
4466 5878 1.335872 GCCAGTTTTCCACATTCACCG 60.336 52.381 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 2574 0.107703 ATGGCTACATGACACCCACG 60.108 55.000 0.00 0.00 35.90 4.94 R
2759 3868 2.698855 TTGCTTAGATCCACCTCTGC 57.301 50.000 0.00 0.00 0.00 4.26 R
3469 4878 2.749044 CCGGACCGTTCGAGGAGA 60.749 66.667 13.94 0.00 34.73 3.71 R
4357 5769 0.825425 CTAGCTCCTGCGGGATCTCA 60.825 60.000 21.14 7.62 45.42 3.27 R
4675 6087 0.838229 CTATTTTCTCGCGACGACCG 59.162 55.000 3.71 0.00 42.21 4.79 R
5622 7367 0.539051 ATGGCTCAGTCCTAGCACAC 59.461 55.000 0.00 0.00 41.93 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 1.632965 GGGATTGCTACCCCCGAAGT 61.633 60.000 0.00 0.00 41.38 3.01
36 38 3.477346 GCTACCCCCGAAGTCCCC 61.477 72.222 0.00 0.00 0.00 4.81
37 39 2.039951 CTACCCCCGAAGTCCCCA 59.960 66.667 0.00 0.00 0.00 4.96
59 61 0.105142 CTAGCCTAACCCTAGCCCCA 60.105 60.000 0.00 0.00 0.00 4.96
62 64 1.060876 AGCCTAACCCTAGCCCCATTA 60.061 52.381 0.00 0.00 0.00 1.90
92 94 2.241176 AGTGTCCCTTTCACTTTCACCA 59.759 45.455 0.00 0.00 42.50 4.17
96 98 2.507886 TCCCTTTCACTTTCACCAGACA 59.492 45.455 0.00 0.00 0.00 3.41
106 108 3.358111 TTCACCAGACAACCTTTGACA 57.642 42.857 0.00 0.00 0.00 3.58
117 119 5.660460 ACAACCTTTGACAAATGGACTTTC 58.340 37.500 17.86 0.00 35.16 2.62
133 135 4.394729 GACTTTCCACCTGGTTGTGATAA 58.605 43.478 0.00 0.00 38.55 1.75
148 151 5.546621 TGTGATAAGTAGCCCATAGGAAC 57.453 43.478 0.00 0.00 33.47 3.62
169 172 6.421377 AACATTCCAAAACAAAGTTTGAGC 57.579 33.333 22.23 0.00 40.29 4.26
184 187 2.787473 TGAGCCCAACCTATCACAAG 57.213 50.000 0.00 0.00 0.00 3.16
216 219 3.780925 CGAACCGTCGTAGTTTCCT 57.219 52.632 0.00 0.00 42.53 3.36
233 236 1.520342 CTCCTCTAAGTGCTGGCGC 60.520 63.158 0.00 0.00 0.00 6.53
251 254 4.083696 TGGCGCTAGTAACTTGTTTTTAGC 60.084 41.667 7.64 13.84 0.00 3.09
328 331 4.374689 AATGCTAGATCCGAGGTCTCTA 57.625 45.455 0.00 0.00 0.00 2.43
333 336 1.950909 AGATCCGAGGTCTCTAAAGCG 59.049 52.381 0.00 0.00 0.00 4.68
341 344 1.469251 GGTCTCTAAAGCGCATCGACA 60.469 52.381 11.47 0.00 0.00 4.35
360 363 4.626042 GACATGATGATGTGTCTCCTACC 58.374 47.826 1.30 0.00 43.22 3.18
376 379 2.170817 CCTACCCTAGGTTTCAAGGCTC 59.829 54.545 8.29 0.00 41.18 4.70
379 382 1.354368 CCCTAGGTTTCAAGGCTCCAA 59.646 52.381 8.29 0.00 0.00 3.53
401 404 2.561037 CCTTTTGTCCGGTGGGCAC 61.561 63.158 0.00 0.00 0.00 5.01
421 424 3.006217 CACTCCAGCGATCATGGAAGATA 59.994 47.826 15.53 0.00 46.04 1.98
431 434 0.827925 ATGGAAGATAGCGGAGGCGA 60.828 55.000 0.00 0.00 46.35 5.54
434 437 2.734756 GAAGATAGCGGAGGCGACGG 62.735 65.000 0.00 0.00 46.35 4.79
465 468 1.831736 CACGGAGGATTGTAAGGACCT 59.168 52.381 0.00 0.00 35.29 3.85
466 469 3.028850 CACGGAGGATTGTAAGGACCTA 58.971 50.000 0.00 0.00 32.53 3.08
467 470 3.029570 ACGGAGGATTGTAAGGACCTAC 58.970 50.000 0.00 0.00 32.53 3.18
468 471 3.297736 CGGAGGATTGTAAGGACCTACT 58.702 50.000 0.00 0.00 31.70 2.57
469 472 3.318557 CGGAGGATTGTAAGGACCTACTC 59.681 52.174 0.00 0.00 31.70 2.59
470 473 3.642377 GGAGGATTGTAAGGACCTACTCC 59.358 52.174 0.00 0.00 39.81 3.85
471 474 3.642377 GAGGATTGTAAGGACCTACTCCC 59.358 52.174 0.00 0.00 40.53 4.30
472 475 3.275228 AGGATTGTAAGGACCTACTCCCT 59.725 47.826 0.00 0.00 40.53 4.20
473 476 4.038633 GGATTGTAAGGACCTACTCCCTT 58.961 47.826 0.00 0.00 44.37 3.95
474 477 4.473922 GGATTGTAAGGACCTACTCCCTTT 59.526 45.833 0.00 0.00 42.37 3.11
475 478 4.903045 TTGTAAGGACCTACTCCCTTTG 57.097 45.455 0.00 0.00 42.37 2.77
476 479 3.865571 TGTAAGGACCTACTCCCTTTGT 58.134 45.455 0.00 0.00 42.37 2.83
477 480 3.836562 TGTAAGGACCTACTCCCTTTGTC 59.163 47.826 0.00 0.00 42.37 3.18
478 481 3.277416 AAGGACCTACTCCCTTTGTCT 57.723 47.619 0.00 0.00 39.61 3.41
479 482 3.277416 AGGACCTACTCCCTTTGTCTT 57.723 47.619 0.00 0.00 40.53 3.01
480 483 4.415224 AGGACCTACTCCCTTTGTCTTA 57.585 45.455 0.00 0.00 40.53 2.10
481 484 4.354662 AGGACCTACTCCCTTTGTCTTAG 58.645 47.826 0.00 0.00 40.53 2.18
482 485 4.045590 AGGACCTACTCCCTTTGTCTTAGA 59.954 45.833 0.00 0.00 40.53 2.10
483 486 4.776308 GGACCTACTCCCTTTGTCTTAGAA 59.224 45.833 0.00 0.00 31.83 2.10
484 487 5.425862 GGACCTACTCCCTTTGTCTTAGAAT 59.574 44.000 0.00 0.00 31.83 2.40
485 488 6.610425 GGACCTACTCCCTTTGTCTTAGAATA 59.390 42.308 0.00 0.00 31.83 1.75
486 489 7.290481 GGACCTACTCCCTTTGTCTTAGAATAT 59.710 40.741 0.00 0.00 31.83 1.28
487 490 9.364653 GACCTACTCCCTTTGTCTTAGAATATA 57.635 37.037 0.00 0.00 0.00 0.86
488 491 9.725206 ACCTACTCCCTTTGTCTTAGAATATAA 57.275 33.333 0.00 0.00 0.00 0.98
494 497 9.729281 TCCCTTTGTCTTAGAATATAAAAACGT 57.271 29.630 0.00 0.00 0.00 3.99
515 518 8.582433 AACGTTTTTGACACTAATATTTTGGG 57.418 30.769 0.00 0.00 0.00 4.12
516 519 7.942990 ACGTTTTTGACACTAATATTTTGGGA 58.057 30.769 0.00 0.00 0.00 4.37
517 520 7.863877 ACGTTTTTGACACTAATATTTTGGGAC 59.136 33.333 0.00 0.00 0.00 4.46
518 521 7.060174 CGTTTTTGACACTAATATTTTGGGACG 59.940 37.037 0.00 0.00 0.00 4.79
519 522 6.503589 TTTGACACTAATATTTTGGGACGG 57.496 37.500 0.00 0.00 0.00 4.79
520 523 5.423704 TGACACTAATATTTTGGGACGGA 57.576 39.130 0.00 0.00 0.00 4.69
521 524 5.424757 TGACACTAATATTTTGGGACGGAG 58.575 41.667 0.00 0.00 0.00 4.63
560 563 5.931146 TCATTTGATTTTTGGGTCCATTTCG 59.069 36.000 0.00 0.00 0.00 3.46
569 572 0.037734 GGTCCATTTCGTTCCTGGGT 59.962 55.000 0.00 0.00 0.00 4.51
590 593 0.667792 GGGACGTCTCTTCTGTGTGC 60.668 60.000 16.46 0.00 0.00 4.57
595 598 1.871408 CGTCTCTTCTGTGTGCTTGCT 60.871 52.381 0.00 0.00 0.00 3.91
598 601 0.469494 TCTTCTGTGTGCTTGCTGGA 59.531 50.000 0.00 0.00 0.00 3.86
603 606 1.595382 GTGTGCTTGCTGGACGTCT 60.595 57.895 16.46 0.00 40.08 4.18
738 762 4.082463 GCTTTCCCCGTCAATCAAATTGTA 60.082 41.667 0.00 0.00 41.02 2.41
764 790 1.881498 GCAGCAGCCTTTGAAGACTCT 60.881 52.381 0.00 0.00 33.58 3.24
765 791 2.075338 CAGCAGCCTTTGAAGACTCTC 58.925 52.381 0.00 0.00 0.00 3.20
801 831 4.131088 GGACACGGAGCGGAGACC 62.131 72.222 0.00 0.00 0.00 3.85
805 835 1.519455 CACGGAGCGGAGACCAATC 60.519 63.158 0.00 0.00 0.00 2.67
961 1004 0.841289 TTCGTTTCCACCCACCTTCT 59.159 50.000 0.00 0.00 0.00 2.85
985 1045 5.187772 TGAGTTCAGACCTTACATATGCAGT 59.812 40.000 1.58 0.00 0.00 4.40
992 1052 7.069950 TCAGACCTTACATATGCAGTGAAGTAT 59.930 37.037 1.58 0.00 0.00 2.12
993 1053 8.360390 CAGACCTTACATATGCAGTGAAGTATA 58.640 37.037 1.58 0.00 0.00 1.47
994 1054 8.580720 AGACCTTACATATGCAGTGAAGTATAG 58.419 37.037 1.58 1.48 0.00 1.31
995 1055 7.155328 ACCTTACATATGCAGTGAAGTATAGC 58.845 38.462 1.58 0.00 0.00 2.97
999 1059 9.639601 TTACATATGCAGTGAAGTATAGCATAC 57.360 33.333 1.58 0.00 46.91 2.39
1000 1060 7.670364 ACATATGCAGTGAAGTATAGCATACA 58.330 34.615 1.58 0.00 46.91 2.29
1001 1061 8.316946 ACATATGCAGTGAAGTATAGCATACAT 58.683 33.333 1.58 0.00 46.91 2.29
1002 1062 8.601476 CATATGCAGTGAAGTATAGCATACATG 58.399 37.037 7.48 0.00 46.91 3.21
1003 1063 6.160576 TGCAGTGAAGTATAGCATACATGA 57.839 37.500 0.00 0.00 0.00 3.07
1004 1064 6.762333 TGCAGTGAAGTATAGCATACATGAT 58.238 36.000 0.00 0.00 0.00 2.45
1005 1065 7.895759 TGCAGTGAAGTATAGCATACATGATA 58.104 34.615 0.00 0.00 32.73 2.15
1006 1066 7.814587 TGCAGTGAAGTATAGCATACATGATAC 59.185 37.037 0.00 0.00 30.75 2.24
1009 1069 9.866798 AGTGAAGTATAGCATACATGATACATG 57.133 33.333 0.00 9.72 30.75 3.21
1026 1098 2.499289 ACATGCATCTCGTCTTCTCCTT 59.501 45.455 0.00 0.00 0.00 3.36
1083 1155 4.067896 ACCACACTTCATTCTTGCTACAG 58.932 43.478 0.00 0.00 0.00 2.74
1089 1161 6.108687 CACTTCATTCTTGCTACAGGTGATA 58.891 40.000 0.00 0.00 0.00 2.15
1092 1164 6.299805 TCATTCTTGCTACAGGTGATAACT 57.700 37.500 0.00 0.00 0.00 2.24
1166 1253 4.065281 AGACGCCGGTACTGCACC 62.065 66.667 1.90 0.00 44.75 5.01
1465 2314 5.839621 AGTCTGTACTTACTCGCAAAAAGA 58.160 37.500 0.00 0.00 29.00 2.52
1493 2342 8.915036 AGTATTTACTCCTCGATTTGTGATAGT 58.085 33.333 0.00 0.00 0.00 2.12
1499 2348 8.693120 ACTCCTCGATTTGTGATAGTAGAATA 57.307 34.615 0.00 0.00 0.00 1.75
1541 2452 3.843893 AATTTGGGAAATGCTATGGGC 57.156 42.857 0.00 0.00 42.22 5.36
1542 2453 2.548464 TTTGGGAAATGCTATGGGCT 57.452 45.000 0.00 0.00 42.39 5.19
1543 2454 3.678965 TTTGGGAAATGCTATGGGCTA 57.321 42.857 0.00 0.00 42.39 3.93
1544 2455 3.901570 TTGGGAAATGCTATGGGCTAT 57.098 42.857 0.00 0.00 42.39 2.97
1546 2457 2.225091 TGGGAAATGCTATGGGCTATGG 60.225 50.000 0.00 0.00 42.39 2.74
1547 2458 2.041620 GGGAAATGCTATGGGCTATGGA 59.958 50.000 0.00 0.00 42.39 3.41
1548 2459 3.350833 GGAAATGCTATGGGCTATGGAG 58.649 50.000 0.00 0.00 42.39 3.86
1549 2460 3.009473 GGAAATGCTATGGGCTATGGAGA 59.991 47.826 0.00 0.00 42.39 3.71
1550 2461 3.996921 AATGCTATGGGCTATGGAGAG 57.003 47.619 0.00 0.00 42.39 3.20
1552 2463 3.196415 TGCTATGGGCTATGGAGAGAT 57.804 47.619 0.00 0.00 42.39 2.75
1554 2465 2.419851 GCTATGGGCTATGGAGAGATGC 60.420 54.545 0.00 0.00 38.06 3.91
1558 2469 1.188219 GGCTATGGAGAGATGCGGGA 61.188 60.000 0.00 0.00 0.00 5.14
1559 2470 0.037790 GCTATGGAGAGATGCGGGAC 60.038 60.000 0.00 0.00 0.00 4.46
1560 2471 1.626686 CTATGGAGAGATGCGGGACT 58.373 55.000 0.00 0.00 0.00 3.85
1561 2472 1.271934 CTATGGAGAGATGCGGGACTG 59.728 57.143 0.00 0.00 0.00 3.51
1562 2473 2.037620 ATGGAGAGATGCGGGACTGC 62.038 60.000 0.00 0.00 0.00 4.40
1563 2474 2.430610 GGAGAGATGCGGGACTGCT 61.431 63.158 4.59 0.00 35.36 4.24
1564 2475 1.067250 GAGAGATGCGGGACTGCTC 59.933 63.158 4.59 0.32 35.36 4.26
1565 2476 2.107953 GAGATGCGGGACTGCTCC 59.892 66.667 4.59 0.00 35.50 4.70
1576 2487 2.887568 CTGCTCCGCGGTGATGAC 60.888 66.667 30.07 12.96 0.00 3.06
1577 2488 4.794439 TGCTCCGCGGTGATGACG 62.794 66.667 30.07 9.76 0.00 4.35
1578 2489 4.492160 GCTCCGCGGTGATGACGA 62.492 66.667 30.07 4.94 0.00 4.20
1579 2490 2.579787 CTCCGCGGTGATGACGAC 60.580 66.667 27.15 0.00 0.00 4.34
1580 2491 3.336715 CTCCGCGGTGATGACGACA 62.337 63.158 27.15 0.00 0.00 4.35
1581 2492 2.202743 CCGCGGTGATGACGACAT 60.203 61.111 19.50 0.00 39.67 3.06
1582 2493 2.516589 CCGCGGTGATGACGACATG 61.517 63.158 19.50 0.00 36.82 3.21
1583 2494 2.703409 GCGGTGATGACGACATGC 59.297 61.111 4.80 0.00 36.82 4.06
1585 2496 2.703409 GGTGATGACGACATGCGC 59.297 61.111 4.80 0.00 46.04 6.09
1586 2497 2.703409 GTGATGACGACATGCGCC 59.297 61.111 4.18 0.00 46.04 6.53
1587 2498 2.100031 GTGATGACGACATGCGCCA 61.100 57.895 4.18 5.41 46.04 5.69
1588 2499 1.810853 TGATGACGACATGCGCCAG 60.811 57.895 4.18 0.00 46.04 4.85
1589 2500 2.512286 ATGACGACATGCGCCAGG 60.512 61.111 4.18 0.00 46.04 4.45
1590 2501 4.758251 TGACGACATGCGCCAGGG 62.758 66.667 4.18 0.00 46.04 4.45
1613 2524 2.512515 CGCAGCTCTAAGGTGGGC 60.513 66.667 9.74 0.00 46.69 5.36
1614 2525 2.671070 GCAGCTCTAAGGTGGGCA 59.329 61.111 8.11 0.00 43.49 5.36
1615 2526 1.746991 GCAGCTCTAAGGTGGGCAC 60.747 63.158 8.11 0.00 43.49 5.01
1616 2527 1.679311 CAGCTCTAAGGTGGGCACA 59.321 57.895 0.00 0.00 39.87 4.57
1617 2528 0.392193 CAGCTCTAAGGTGGGCACAG 60.392 60.000 0.00 0.00 39.87 3.66
1618 2529 1.078143 GCTCTAAGGTGGGCACAGG 60.078 63.158 0.00 0.00 0.00 4.00
1619 2530 1.604378 CTCTAAGGTGGGCACAGGG 59.396 63.158 0.00 0.00 0.00 4.45
1620 2531 2.044946 CTAAGGTGGGCACAGGGC 60.045 66.667 0.00 0.00 43.74 5.19
1621 2532 3.976701 CTAAGGTGGGCACAGGGCG 62.977 68.421 0.00 0.00 46.16 6.13
1625 2536 3.702048 GTGGGCACAGGGCGAGTA 61.702 66.667 0.00 0.00 46.16 2.59
1626 2537 3.390521 TGGGCACAGGGCGAGTAG 61.391 66.667 0.00 0.00 46.16 2.57
1627 2538 3.391382 GGGCACAGGGCGAGTAGT 61.391 66.667 0.00 0.00 46.16 2.73
1628 2539 2.184579 GGCACAGGGCGAGTAGTC 59.815 66.667 0.00 0.00 46.16 2.59
1629 2540 2.646175 GGCACAGGGCGAGTAGTCA 61.646 63.158 0.00 0.00 46.16 3.41
1630 2541 1.446272 GCACAGGGCGAGTAGTCAC 60.446 63.158 0.00 0.00 0.00 3.67
1631 2542 1.964448 CACAGGGCGAGTAGTCACA 59.036 57.895 0.00 0.00 0.00 3.58
1632 2543 0.532573 CACAGGGCGAGTAGTCACAT 59.467 55.000 0.00 0.00 0.00 3.21
1633 2544 1.749063 CACAGGGCGAGTAGTCACATA 59.251 52.381 0.00 0.00 0.00 2.29
1634 2545 2.025155 ACAGGGCGAGTAGTCACATAG 58.975 52.381 0.00 0.00 0.00 2.23
1635 2546 2.025155 CAGGGCGAGTAGTCACATAGT 58.975 52.381 0.00 0.00 0.00 2.12
1636 2547 2.025155 AGGGCGAGTAGTCACATAGTG 58.975 52.381 0.00 0.00 34.45 2.74
1637 2548 1.749634 GGGCGAGTAGTCACATAGTGT 59.250 52.381 0.00 0.00 34.79 3.55
1646 2557 3.362581 CACATAGTGTGCCGGGTAG 57.637 57.895 2.18 0.00 41.89 3.18
1647 2558 0.821517 CACATAGTGTGCCGGGTAGA 59.178 55.000 2.18 0.00 41.89 2.59
1648 2559 1.112113 ACATAGTGTGCCGGGTAGAG 58.888 55.000 2.18 0.00 0.00 2.43
1649 2560 1.112113 CATAGTGTGCCGGGTAGAGT 58.888 55.000 2.18 0.00 0.00 3.24
1650 2561 1.480954 CATAGTGTGCCGGGTAGAGTT 59.519 52.381 2.18 0.00 0.00 3.01
1651 2562 2.512692 TAGTGTGCCGGGTAGAGTTA 57.487 50.000 2.18 0.00 0.00 2.24
1652 2563 1.183549 AGTGTGCCGGGTAGAGTTAG 58.816 55.000 2.18 0.00 0.00 2.34
1653 2564 0.175073 GTGTGCCGGGTAGAGTTAGG 59.825 60.000 2.18 0.00 0.00 2.69
1654 2565 0.251922 TGTGCCGGGTAGAGTTAGGT 60.252 55.000 2.18 0.00 0.00 3.08
1655 2566 0.175073 GTGCCGGGTAGAGTTAGGTG 59.825 60.000 2.18 0.00 0.00 4.00
1656 2567 0.974010 TGCCGGGTAGAGTTAGGTGG 60.974 60.000 2.18 0.00 0.00 4.61
1657 2568 0.685458 GCCGGGTAGAGTTAGGTGGA 60.685 60.000 2.18 0.00 0.00 4.02
1658 2569 1.400737 CCGGGTAGAGTTAGGTGGAG 58.599 60.000 0.00 0.00 0.00 3.86
1659 2570 0.745468 CGGGTAGAGTTAGGTGGAGC 59.255 60.000 0.00 0.00 0.00 4.70
1660 2571 1.685491 CGGGTAGAGTTAGGTGGAGCT 60.685 57.143 0.00 0.00 0.00 4.09
1661 2572 1.757699 GGGTAGAGTTAGGTGGAGCTG 59.242 57.143 0.00 0.00 0.00 4.24
1662 2573 1.757699 GGTAGAGTTAGGTGGAGCTGG 59.242 57.143 0.00 0.00 0.00 4.85
1663 2574 1.137282 GTAGAGTTAGGTGGAGCTGGC 59.863 57.143 0.00 0.00 0.00 4.85
1664 2575 1.153549 GAGTTAGGTGGAGCTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
1665 2576 1.889530 GAGTTAGGTGGAGCTGGCGT 61.890 60.000 0.00 0.00 0.00 5.68
1666 2577 1.741770 GTTAGGTGGAGCTGGCGTG 60.742 63.158 0.00 0.00 0.00 5.34
1667 2578 2.954684 TTAGGTGGAGCTGGCGTGG 61.955 63.158 0.00 0.00 0.00 4.94
1673 2584 4.314440 GAGCTGGCGTGGGTGTCA 62.314 66.667 0.00 0.00 0.00 3.58
1674 2585 3.612247 GAGCTGGCGTGGGTGTCAT 62.612 63.158 0.00 0.00 0.00 3.06
1675 2586 3.434319 GCTGGCGTGGGTGTCATG 61.434 66.667 0.00 0.00 35.53 3.07
1676 2587 2.032528 CTGGCGTGGGTGTCATGT 59.967 61.111 0.00 0.00 34.91 3.21
1677 2588 1.295101 CTGGCGTGGGTGTCATGTA 59.705 57.895 0.00 0.00 34.91 2.29
1678 2589 0.740868 CTGGCGTGGGTGTCATGTAG 60.741 60.000 0.00 0.00 34.91 2.74
1679 2590 2.106683 GGCGTGGGTGTCATGTAGC 61.107 63.158 0.00 0.00 34.91 3.58
1680 2591 2.106683 GCGTGGGTGTCATGTAGCC 61.107 63.158 12.11 12.11 34.91 3.93
1681 2592 1.295101 CGTGGGTGTCATGTAGCCA 59.705 57.895 16.07 16.07 42.93 4.75
1682 2593 0.107703 CGTGGGTGTCATGTAGCCAT 60.108 55.000 20.64 0.00 46.23 4.40
1683 2594 1.382522 GTGGGTGTCATGTAGCCATG 58.617 55.000 20.64 0.00 46.23 3.66
1684 2595 0.394216 TGGGTGTCATGTAGCCATGC 60.394 55.000 16.07 0.00 46.64 4.06
1685 2596 1.103398 GGGTGTCATGTAGCCATGCC 61.103 60.000 13.53 0.00 46.64 4.40
1686 2597 0.394216 GGTGTCATGTAGCCATGCCA 60.394 55.000 0.00 0.00 46.64 4.92
1687 2598 1.683943 GTGTCATGTAGCCATGCCAT 58.316 50.000 0.00 0.00 46.64 4.40
1688 2599 1.335810 GTGTCATGTAGCCATGCCATG 59.664 52.381 0.00 0.00 46.64 3.66
1689 2600 1.064537 TGTCATGTAGCCATGCCATGT 60.065 47.619 3.63 0.00 46.64 3.21
1690 2601 2.172293 TGTCATGTAGCCATGCCATGTA 59.828 45.455 3.63 0.00 46.64 2.29
1691 2602 3.213506 GTCATGTAGCCATGCCATGTAA 58.786 45.455 3.63 0.00 46.64 2.41
1692 2603 3.631686 GTCATGTAGCCATGCCATGTAAA 59.368 43.478 3.63 0.00 46.64 2.01
1693 2604 3.631686 TCATGTAGCCATGCCATGTAAAC 59.368 43.478 3.63 0.00 46.64 2.01
1694 2605 3.364460 TGTAGCCATGCCATGTAAACT 57.636 42.857 3.63 0.00 0.00 2.66
1695 2606 4.495690 TGTAGCCATGCCATGTAAACTA 57.504 40.909 3.63 0.00 0.00 2.24
1696 2607 5.047566 TGTAGCCATGCCATGTAAACTAT 57.952 39.130 3.63 0.00 0.00 2.12
1697 2608 5.445069 TGTAGCCATGCCATGTAAACTATT 58.555 37.500 3.63 0.00 0.00 1.73
1698 2609 5.890985 TGTAGCCATGCCATGTAAACTATTT 59.109 36.000 3.63 0.00 0.00 1.40
1699 2610 5.266733 AGCCATGCCATGTAAACTATTTG 57.733 39.130 3.63 0.00 0.00 2.32
1700 2611 4.099881 AGCCATGCCATGTAAACTATTTGG 59.900 41.667 3.63 0.00 0.00 3.28
1701 2612 4.740334 GCCATGCCATGTAAACTATTTGGG 60.740 45.833 3.63 0.00 0.00 4.12
1702 2613 4.202243 CCATGCCATGTAAACTATTTGGGG 60.202 45.833 3.63 0.00 0.00 4.96
1703 2614 2.763448 TGCCATGTAAACTATTTGGGGC 59.237 45.455 0.00 0.00 39.29 5.80
1704 2615 3.031013 GCCATGTAAACTATTTGGGGCT 58.969 45.455 0.00 0.00 36.04 5.19
1705 2616 3.068165 GCCATGTAAACTATTTGGGGCTC 59.932 47.826 0.00 0.00 36.04 4.70
1706 2617 4.536765 CCATGTAAACTATTTGGGGCTCT 58.463 43.478 0.00 0.00 0.00 4.09
1707 2618 4.956075 CCATGTAAACTATTTGGGGCTCTT 59.044 41.667 0.00 0.00 0.00 2.85
1708 2619 5.422012 CCATGTAAACTATTTGGGGCTCTTT 59.578 40.000 0.00 0.00 0.00 2.52
1709 2620 6.405842 CCATGTAAACTATTTGGGGCTCTTTC 60.406 42.308 0.00 0.00 0.00 2.62
1710 2621 5.014202 TGTAAACTATTTGGGGCTCTTTCC 58.986 41.667 0.00 0.00 0.00 3.13
1711 2622 2.828661 ACTATTTGGGGCTCTTTCCC 57.171 50.000 0.00 0.00 45.80 3.97
1718 2629 3.579275 GGGCTCTTTCCCCTTCTTC 57.421 57.895 0.00 0.00 40.51 2.87
1719 2630 0.995803 GGGCTCTTTCCCCTTCTTCT 59.004 55.000 0.00 0.00 40.51 2.85
1720 2631 1.065053 GGGCTCTTTCCCCTTCTTCTC 60.065 57.143 0.00 0.00 40.51 2.87
1721 2632 1.912731 GGCTCTTTCCCCTTCTTCTCT 59.087 52.381 0.00 0.00 0.00 3.10
1722 2633 2.307392 GGCTCTTTCCCCTTCTTCTCTT 59.693 50.000 0.00 0.00 0.00 2.85
1723 2634 3.519913 GGCTCTTTCCCCTTCTTCTCTTA 59.480 47.826 0.00 0.00 0.00 2.10
1724 2635 4.019231 GGCTCTTTCCCCTTCTTCTCTTAA 60.019 45.833 0.00 0.00 0.00 1.85
1725 2636 5.339612 GGCTCTTTCCCCTTCTTCTCTTAAT 60.340 44.000 0.00 0.00 0.00 1.40
1726 2637 6.126739 GGCTCTTTCCCCTTCTTCTCTTAATA 60.127 42.308 0.00 0.00 0.00 0.98
1727 2638 6.989759 GCTCTTTCCCCTTCTTCTCTTAATAG 59.010 42.308 0.00 0.00 0.00 1.73
1728 2639 7.147637 GCTCTTTCCCCTTCTTCTCTTAATAGA 60.148 40.741 0.00 0.00 0.00 1.98
1729 2640 8.862091 TCTTTCCCCTTCTTCTCTTAATAGAT 57.138 34.615 0.00 0.00 0.00 1.98
1730 2641 8.709308 TCTTTCCCCTTCTTCTCTTAATAGATG 58.291 37.037 0.00 0.00 0.00 2.90
1731 2642 8.624019 TTTCCCCTTCTTCTCTTAATAGATGA 57.376 34.615 3.23 3.23 0.00 2.92
1732 2643 8.805145 TTCCCCTTCTTCTCTTAATAGATGAT 57.195 34.615 7.12 0.00 31.82 2.45
1733 2644 9.898576 TTCCCCTTCTTCTCTTAATAGATGATA 57.101 33.333 7.12 0.76 31.82 2.15
1734 2645 9.315363 TCCCCTTCTTCTCTTAATAGATGATAC 57.685 37.037 7.12 0.00 31.82 2.24
1735 2646 8.247562 CCCCTTCTTCTCTTAATAGATGATACG 58.752 40.741 7.12 0.00 31.82 3.06
1736 2647 7.757624 CCCTTCTTCTCTTAATAGATGATACGC 59.242 40.741 7.12 0.00 31.82 4.42
1737 2648 8.300286 CCTTCTTCTCTTAATAGATGATACGCA 58.700 37.037 7.12 0.00 31.82 5.24
1738 2649 9.123709 CTTCTTCTCTTAATAGATGATACGCAC 57.876 37.037 7.12 0.00 31.82 5.34
1739 2650 8.397575 TCTTCTCTTAATAGATGATACGCACT 57.602 34.615 3.23 0.00 0.00 4.40
1740 2651 8.508062 TCTTCTCTTAATAGATGATACGCACTC 58.492 37.037 3.23 0.00 0.00 3.51
1741 2652 7.987750 TCTCTTAATAGATGATACGCACTCT 57.012 36.000 0.00 0.00 0.00 3.24
1742 2653 9.503399 TTCTCTTAATAGATGATACGCACTCTA 57.497 33.333 0.00 0.00 0.00 2.43
1743 2654 9.157104 TCTCTTAATAGATGATACGCACTCTAG 57.843 37.037 0.00 0.00 0.00 2.43
1744 2655 8.850007 TCTTAATAGATGATACGCACTCTAGT 57.150 34.615 0.00 0.00 0.00 2.57
1759 2670 6.706055 CACTCTAGTGCGTATTCAAGAAAA 57.294 37.500 0.00 0.00 39.39 2.29
1760 2671 7.117241 CACTCTAGTGCGTATTCAAGAAAAA 57.883 36.000 0.00 0.00 39.39 1.94
1809 2720 4.141801 CCTGTTGGATTCCGTATGTCCTTA 60.142 45.833 0.00 0.00 34.57 2.69
1823 2740 6.818644 CGTATGTCCTTAGGCATATTGCTATT 59.181 38.462 14.90 0.00 44.28 1.73
1852 2769 7.969536 ATTATGATGACCAAAATCTACGGAG 57.030 36.000 0.00 0.00 0.00 4.63
1853 2770 5.614324 ATGATGACCAAAATCTACGGAGA 57.386 39.130 0.00 0.00 35.71 3.71
1910 2827 2.426738 ACCAAACGCCATGGATATGTTG 59.573 45.455 18.40 11.04 40.56 3.33
1914 2831 0.235665 CGCCATGGATATGTTGTCGC 59.764 55.000 18.40 0.00 32.21 5.19
1916 2833 1.265095 GCCATGGATATGTTGTCGCAG 59.735 52.381 18.40 0.00 32.21 5.18
1932 2849 3.312697 GTCGCAGGGATAACAATTTCCTC 59.687 47.826 0.00 0.00 32.34 3.71
1950 2867 3.894427 TCCTCAAGTAAGCATGGCAAAAA 59.106 39.130 0.00 0.00 0.00 1.94
1951 2868 4.527816 TCCTCAAGTAAGCATGGCAAAAAT 59.472 37.500 0.00 0.00 0.00 1.82
1960 2892 3.119245 AGCATGGCAAAAATACTGAGCAG 60.119 43.478 0.00 0.00 0.00 4.24
2030 2962 6.242829 GCAAAATAATTTGTCATTCCAAGCG 58.757 36.000 5.21 0.00 46.19 4.68
2040 2972 3.674753 GTCATTCCAAGCGTTTGATTTGG 59.325 43.478 14.10 0.00 42.12 3.28
2056 2988 3.766068 TTTGGCATGCTGAAAAATCCA 57.234 38.095 18.92 0.00 0.00 3.41
2057 2989 2.747396 TGGCATGCTGAAAAATCCAC 57.253 45.000 18.92 0.00 0.00 4.02
2059 2991 1.275856 GGCATGCTGAAAAATCCACCA 59.724 47.619 18.92 0.00 0.00 4.17
2073 3005 1.072489 TCCACCATTCGGTTTGTAGCA 59.928 47.619 0.00 0.00 46.31 3.49
2089 3021 7.412891 GGTTTGTAGCAAAATCCAAATGTATGC 60.413 37.037 0.00 0.00 0.00 3.14
2101 3034 2.185004 ATGTATGCGGCTTATGTCCC 57.815 50.000 0.00 0.00 0.00 4.46
2206 3156 7.964545 AATGACTTCAAGACGTTGTAAAAAC 57.035 32.000 0.00 0.00 34.98 2.43
2208 3158 4.900664 ACTTCAAGACGTTGTAAAAACGG 58.099 39.130 14.32 0.00 46.86 4.44
2209 3159 4.630940 ACTTCAAGACGTTGTAAAAACGGA 59.369 37.500 14.32 0.36 46.86 4.69
2210 3160 5.122082 ACTTCAAGACGTTGTAAAAACGGAA 59.878 36.000 14.32 7.46 46.86 4.30
2211 3161 5.542616 TCAAGACGTTGTAAAAACGGAAA 57.457 34.783 14.32 0.00 46.86 3.13
2217 3167 7.696755 AGACGTTGTAAAAACGGAAAGTAAAT 58.303 30.769 14.32 0.00 46.86 1.40
2281 3231 5.336770 GGTGCCCTTCTCCATTTTCTTAAAG 60.337 44.000 0.00 0.00 0.00 1.85
2628 3714 8.078596 GTCTTCTTTTTGTTAGAGCATGACAAT 58.921 33.333 0.00 0.00 37.26 2.71
2677 3786 5.249622 TGGATCCAAATGTACACACTCCTTA 59.750 40.000 13.46 0.00 0.00 2.69
2759 3868 3.067106 GCACATATGTTCCCATACCTCG 58.933 50.000 5.37 0.00 36.40 4.63
3123 4526 9.378551 TGGTAGTAAAATTGATGCTAGTAACAG 57.621 33.333 0.00 0.00 0.00 3.16
3174 4580 3.625745 ACCTAACAAGGTTGCCTCG 57.374 52.632 0.00 0.00 39.57 4.63
3182 4588 0.035458 AAGGTTGCCTCGAGTCCTTG 59.965 55.000 19.91 4.87 37.17 3.61
3203 4609 5.942977 TGGATATCTACCAGAACTAGGGA 57.057 43.478 2.05 0.00 33.22 4.20
3206 4612 6.954684 TGGATATCTACCAGAACTAGGGAATC 59.045 42.308 2.05 0.00 33.22 2.52
3247 4653 5.104360 TCAAATTCAAGGGGAGATACCTCAG 60.104 44.000 0.00 0.00 42.78 3.35
3258 4664 4.443598 GGAGATACCTCAGTGGATTTGGAC 60.444 50.000 0.00 0.00 41.20 4.02
3298 4704 0.464036 TGTCGCACAACCTCTTCACT 59.536 50.000 0.00 0.00 0.00 3.41
3334 4740 5.521010 GCCGCCGCACTATGTTAATATAATA 59.479 40.000 0.00 0.00 34.03 0.98
3469 4878 3.023832 CCGCTTCATCCAAATAAACCCT 58.976 45.455 0.00 0.00 0.00 4.34
3538 4947 3.010584 ACAATGAACTGAGTGGGCCTATT 59.989 43.478 4.53 0.00 0.00 1.73
3625 5037 2.484065 CGGATCGGTGCCACCTTATTTA 60.484 50.000 12.94 0.00 35.66 1.40
3678 5090 3.973425 ACTTGAGGGGAAATCATCTTGG 58.027 45.455 0.00 0.00 0.00 3.61
3847 5259 3.589288 ACTCTTTCCCTATATGGATGGGC 59.411 47.826 0.00 0.00 40.69 5.36
3871 5283 2.202756 CCGCAACTCCGGCTACTC 60.203 66.667 0.00 0.00 42.03 2.59
3984 5396 3.765381 TCATTGACCTTGCAGGAAATCA 58.235 40.909 8.91 1.90 37.67 2.57
4041 5453 2.008242 TTCAAGTCCATGGTTTGGGG 57.992 50.000 22.70 7.80 46.45 4.96
4094 5506 6.750501 TGATTATACTACAGTGTCTGCGAAAC 59.249 38.462 0.00 0.00 34.37 2.78
4297 5709 4.778143 GGCGGCAAGATCCCACGT 62.778 66.667 3.07 0.00 0.00 4.49
4314 5726 3.241530 TGAGCTCGGCCAGTTGGT 61.242 61.111 9.64 0.00 37.57 3.67
4357 5769 2.028385 GTCGTGGAACCATCTTGTAGGT 60.028 50.000 0.00 0.00 40.61 3.08
4466 5878 1.335872 GCCAGTTTTCCACATTCACCG 60.336 52.381 0.00 0.00 0.00 4.94
4758 6175 3.648339 ACAATCAAGGATGTGTTGTGC 57.352 42.857 0.00 0.00 36.15 4.57
4774 6191 3.206034 TGTGCAATTTCATGAGCGAAG 57.794 42.857 0.00 0.00 0.00 3.79
4775 6192 2.095110 TGTGCAATTTCATGAGCGAAGG 60.095 45.455 0.00 0.00 0.00 3.46
4776 6193 2.095059 GTGCAATTTCATGAGCGAAGGT 60.095 45.455 0.00 0.00 46.54 3.50
4777 6194 2.557924 TGCAATTTCATGAGCGAAGGTT 59.442 40.909 0.00 0.00 39.88 3.50
4778 6195 2.919229 GCAATTTCATGAGCGAAGGTTG 59.081 45.455 0.00 0.00 39.88 3.77
4793 6224 5.761003 CGAAGGTTGAATGCATGCAATATA 58.239 37.500 26.68 8.83 0.00 0.86
5356 7101 4.429854 AGAATAGCCCAAGTTCCATCTC 57.570 45.455 0.00 0.00 0.00 2.75
5448 7193 9.906660 TTGTTATACAAATTTGGAGTGATTCAC 57.093 29.630 21.74 8.82 34.76 3.18
5455 7200 4.852134 TTTGGAGTGATTCACAACATGG 57.148 40.909 18.57 0.00 36.74 3.66
5456 7201 3.507162 TGGAGTGATTCACAACATGGT 57.493 42.857 18.57 0.00 36.74 3.55
5457 7202 3.148412 TGGAGTGATTCACAACATGGTG 58.852 45.455 18.57 9.83 36.74 4.17
5458 7203 3.181446 TGGAGTGATTCACAACATGGTGA 60.181 43.478 19.90 9.34 45.54 4.02
5465 7210 3.979101 TCACAACATGGTGAGATAGCA 57.021 42.857 19.90 0.00 42.56 3.49
5466 7211 4.284829 TCACAACATGGTGAGATAGCAA 57.715 40.909 19.90 0.00 42.56 3.91
5467 7212 4.002982 TCACAACATGGTGAGATAGCAAC 58.997 43.478 19.90 0.00 42.56 4.17
5468 7213 3.002791 ACAACATGGTGAGATAGCAACG 58.997 45.455 19.90 0.00 40.70 4.10
5469 7214 3.002791 CAACATGGTGAGATAGCAACGT 58.997 45.455 4.15 0.00 40.70 3.99
5470 7215 2.621338 ACATGGTGAGATAGCAACGTG 58.379 47.619 0.00 0.00 45.66 4.49
5471 7216 2.621338 CATGGTGAGATAGCAACGTGT 58.379 47.619 0.00 0.00 40.70 4.49
5472 7217 3.780902 CATGGTGAGATAGCAACGTGTA 58.219 45.455 0.00 0.00 40.70 2.90
5473 7218 3.226346 TGGTGAGATAGCAACGTGTAC 57.774 47.619 0.00 0.00 33.01 2.90
5474 7219 2.823747 TGGTGAGATAGCAACGTGTACT 59.176 45.455 0.00 0.00 33.01 2.73
5475 7220 3.119602 TGGTGAGATAGCAACGTGTACTC 60.120 47.826 0.00 0.00 33.01 2.59
5476 7221 3.128938 GGTGAGATAGCAACGTGTACTCT 59.871 47.826 0.00 0.00 0.00 3.24
5566 7311 8.318412 ACATGGTAAATCACATACAACAGACTA 58.682 33.333 0.00 0.00 0.00 2.59
5582 7327 4.959210 ACAGACTAGGAACATCTAGCACAT 59.041 41.667 0.00 0.00 40.13 3.21
5589 7334 4.280929 AGGAACATCTAGCACATACGCATA 59.719 41.667 0.00 0.00 0.00 3.14
5602 7347 5.731256 CATACGCATATGTGTAGAGAACG 57.269 43.478 27.77 12.25 43.26 3.95
5608 7353 5.337554 GCATATGTGTAGAGAACGTGTGTA 58.662 41.667 4.29 0.00 30.73 2.90
5617 7362 5.392767 AGAGAACGTGTGTATCTGTTCAT 57.607 39.130 6.70 0.00 42.35 2.57
5621 7366 3.585862 ACGTGTGTATCTGTTCATGTCC 58.414 45.455 0.00 0.00 0.00 4.02
5622 7367 2.598637 CGTGTGTATCTGTTCATGTCCG 59.401 50.000 0.00 0.00 0.00 4.79
5638 7383 1.153745 CCGTGTGCTAGGACTGAGC 60.154 63.158 15.92 2.87 40.53 4.26
5674 7419 7.836183 AGTTTTCTTTGAGTATGATAAGCCCAT 59.164 33.333 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 0.031414 GGGTTAGGCTAGTCTGGGGA 60.031 60.000 7.24 0.00 0.00 4.81
36 38 1.964933 GGCTAGGGTTAGGCTAGTCTG 59.035 57.143 7.24 0.00 46.12 3.51
37 39 2.385135 GGCTAGGGTTAGGCTAGTCT 57.615 55.000 0.74 0.74 46.12 3.24
44 46 2.107726 GGTTAATGGGGCTAGGGTTAGG 59.892 54.545 0.00 0.00 0.00 2.69
59 61 4.741928 AAGGGACACTTTCCTGGTTAAT 57.258 40.909 0.00 0.00 45.09 1.40
92 94 4.536765 AGTCCATTTGTCAAAGGTTGTCT 58.463 39.130 8.98 0.04 0.00 3.41
96 98 4.714308 TGGAAAGTCCATTTGTCAAAGGTT 59.286 37.500 8.98 0.00 42.67 3.50
117 119 3.270877 GCTACTTATCACAACCAGGTGG 58.729 50.000 0.00 0.00 39.27 4.61
124 126 5.546621 TCCTATGGGCTACTTATCACAAC 57.453 43.478 0.00 0.00 0.00 3.32
148 151 4.273235 GGGCTCAAACTTTGTTTTGGAATG 59.727 41.667 1.44 0.00 37.13 2.67
153 156 3.373748 GGTTGGGCTCAAACTTTGTTTTG 59.626 43.478 7.24 0.00 37.59 2.44
169 172 3.203040 AGGGAATCTTGTGATAGGTTGGG 59.797 47.826 0.00 0.00 31.70 4.12
211 214 1.279271 GCCAGCACTTAGAGGAGGAAA 59.721 52.381 0.00 0.00 0.00 3.13
216 219 2.579201 GCGCCAGCACTTAGAGGA 59.421 61.111 0.00 0.00 44.35 3.71
251 254 6.455360 ACAGCCTTTGTGTATATTGGATTG 57.545 37.500 0.00 0.00 38.99 2.67
259 262 3.329520 ACCTCCAACAGCCTTTGTGTATA 59.670 43.478 0.00 0.00 40.74 1.47
262 265 0.258774 ACCTCCAACAGCCTTTGTGT 59.741 50.000 0.00 0.00 40.74 3.72
263 266 0.670162 CACCTCCAACAGCCTTTGTG 59.330 55.000 0.00 0.00 40.74 3.33
303 306 4.475345 AGACCTCGGATCTAGCATTACTT 58.525 43.478 0.00 0.00 0.00 2.24
312 315 3.139850 CGCTTTAGAGACCTCGGATCTA 58.860 50.000 0.00 0.00 34.09 1.98
314 317 1.600912 GCGCTTTAGAGACCTCGGATC 60.601 57.143 0.00 0.00 34.09 3.36
341 344 3.933886 AGGGTAGGAGACACATCATCAT 58.066 45.455 0.00 0.00 31.73 2.45
360 363 2.305927 TCTTGGAGCCTTGAAACCTAGG 59.694 50.000 7.41 7.41 34.54 3.02
376 379 1.336755 CACCGGACAAAAGGTTCTTGG 59.663 52.381 9.46 0.00 39.00 3.61
379 382 0.179001 CCCACCGGACAAAAGGTTCT 60.179 55.000 9.46 0.00 39.00 3.01
401 404 2.835580 ATCTTCCATGATCGCTGGAG 57.164 50.000 14.46 10.32 43.46 3.86
405 408 1.067283 CCGCTATCTTCCATGATCGCT 60.067 52.381 0.00 0.00 34.34 4.93
431 434 1.738830 CCGTGCCGAATTACACCGT 60.739 57.895 0.00 0.00 33.09 4.83
434 437 0.108520 TCCTCCGTGCCGAATTACAC 60.109 55.000 0.00 0.00 0.00 2.90
448 451 3.642377 GGAGTAGGTCCTTACAATCCTCC 59.358 52.174 0.00 0.00 42.99 4.30
449 452 3.642377 GGGAGTAGGTCCTTACAATCCTC 59.358 52.174 0.00 0.00 46.06 3.71
453 456 4.850386 ACAAAGGGAGTAGGTCCTTACAAT 59.150 41.667 0.00 0.00 46.06 2.71
468 471 9.729281 ACGTTTTTATATTCTAAGACAAAGGGA 57.271 29.630 0.00 0.00 0.00 4.20
489 492 9.036671 CCCAAAATATTAGTGTCAAAAACGTTT 57.963 29.630 7.96 7.96 0.00 3.60
490 493 8.414778 TCCCAAAATATTAGTGTCAAAAACGTT 58.585 29.630 0.00 0.00 0.00 3.99
491 494 7.863877 GTCCCAAAATATTAGTGTCAAAAACGT 59.136 33.333 0.00 0.00 0.00 3.99
492 495 7.060174 CGTCCCAAAATATTAGTGTCAAAAACG 59.940 37.037 0.00 0.00 0.00 3.60
493 496 7.327518 CCGTCCCAAAATATTAGTGTCAAAAAC 59.672 37.037 0.00 0.00 0.00 2.43
494 497 7.230913 TCCGTCCCAAAATATTAGTGTCAAAAA 59.769 33.333 0.00 0.00 0.00 1.94
495 498 6.715718 TCCGTCCCAAAATATTAGTGTCAAAA 59.284 34.615 0.00 0.00 0.00 2.44
496 499 6.239396 TCCGTCCCAAAATATTAGTGTCAAA 58.761 36.000 0.00 0.00 0.00 2.69
497 500 5.806818 TCCGTCCCAAAATATTAGTGTCAA 58.193 37.500 0.00 0.00 0.00 3.18
498 501 5.046159 ACTCCGTCCCAAAATATTAGTGTCA 60.046 40.000 0.00 0.00 0.00 3.58
499 502 5.293569 CACTCCGTCCCAAAATATTAGTGTC 59.706 44.000 0.00 0.00 0.00 3.67
500 503 5.046159 TCACTCCGTCCCAAAATATTAGTGT 60.046 40.000 8.37 0.00 34.77 3.55
501 504 5.424757 TCACTCCGTCCCAAAATATTAGTG 58.575 41.667 0.00 0.00 34.54 2.74
502 505 5.189145 ACTCACTCCGTCCCAAAATATTAGT 59.811 40.000 0.00 0.00 0.00 2.24
503 506 5.671493 ACTCACTCCGTCCCAAAATATTAG 58.329 41.667 0.00 0.00 0.00 1.73
504 507 5.687166 ACTCACTCCGTCCCAAAATATTA 57.313 39.130 0.00 0.00 0.00 0.98
505 508 4.569719 ACTCACTCCGTCCCAAAATATT 57.430 40.909 0.00 0.00 0.00 1.28
506 509 5.687166 TTACTCACTCCGTCCCAAAATAT 57.313 39.130 0.00 0.00 0.00 1.28
507 510 5.687166 ATTACTCACTCCGTCCCAAAATA 57.313 39.130 0.00 0.00 0.00 1.40
508 511 4.569719 ATTACTCACTCCGTCCCAAAAT 57.430 40.909 0.00 0.00 0.00 1.82
509 512 5.687166 ATATTACTCACTCCGTCCCAAAA 57.313 39.130 0.00 0.00 0.00 2.44
510 513 5.687166 AATATTACTCACTCCGTCCCAAA 57.313 39.130 0.00 0.00 0.00 3.28
511 514 5.687166 AAATATTACTCACTCCGTCCCAA 57.313 39.130 0.00 0.00 0.00 4.12
512 515 6.989155 ATAAATATTACTCACTCCGTCCCA 57.011 37.500 0.00 0.00 0.00 4.37
513 516 7.439381 TGAATAAATATTACTCACTCCGTCCC 58.561 38.462 0.00 0.00 0.00 4.46
514 517 9.490379 AATGAATAAATATTACTCACTCCGTCC 57.510 33.333 0.00 0.00 0.00 4.79
543 546 3.901222 AGGAACGAAATGGACCCAAAAAT 59.099 39.130 0.00 0.00 0.00 1.82
544 547 3.068873 CAGGAACGAAATGGACCCAAAAA 59.931 43.478 0.00 0.00 0.00 1.94
545 548 2.625790 CAGGAACGAAATGGACCCAAAA 59.374 45.455 0.00 0.00 0.00 2.44
546 549 2.235016 CAGGAACGAAATGGACCCAAA 58.765 47.619 0.00 0.00 0.00 3.28
547 550 1.546773 CCAGGAACGAAATGGACCCAA 60.547 52.381 0.00 0.00 36.09 4.12
548 551 0.037590 CCAGGAACGAAATGGACCCA 59.962 55.000 0.00 0.00 36.09 4.51
549 552 0.679960 CCCAGGAACGAAATGGACCC 60.680 60.000 0.00 0.00 36.09 4.46
550 553 0.037734 ACCCAGGAACGAAATGGACC 59.962 55.000 0.00 0.00 36.09 4.46
551 554 1.539827 CAACCCAGGAACGAAATGGAC 59.460 52.381 0.00 0.00 36.09 4.02
560 563 1.302271 GACGTCCCAACCCAGGAAC 60.302 63.158 3.51 0.00 34.43 3.62
569 572 1.068588 CACACAGAAGAGACGTCCCAA 59.931 52.381 13.01 0.00 0.00 4.12
590 593 1.423395 GTGAAGAGACGTCCAGCAAG 58.577 55.000 13.01 0.00 0.00 4.01
595 598 0.031585 CAACCGTGAAGAGACGTCCA 59.968 55.000 13.01 0.00 37.66 4.02
598 601 3.572584 GAATACAACCGTGAAGAGACGT 58.427 45.455 0.00 0.00 37.66 4.34
603 606 4.157105 TCTCATCGAATACAACCGTGAAGA 59.843 41.667 0.00 0.00 0.00 2.87
631 652 0.665369 CTACCGCGTGTTTCCGTTCT 60.665 55.000 4.92 0.00 0.00 3.01
738 762 0.819259 TCAAAGGCTGCTGCTTCGTT 60.819 50.000 15.64 1.65 39.59 3.85
764 790 1.135774 CCGTTCATGACTTCGACTCGA 60.136 52.381 13.35 0.00 0.00 4.04
765 791 1.260206 CCGTTCATGACTTCGACTCG 58.740 55.000 13.35 0.00 0.00 4.18
801 831 6.668541 ATTGTATCTTGACGTGGAAGATTG 57.331 37.500 19.46 0.00 40.09 2.67
805 835 5.862924 ACAATTGTATCTTGACGTGGAAG 57.137 39.130 9.97 0.00 0.00 3.46
961 1004 5.187772 ACTGCATATGTAAGGTCTGAACTCA 59.812 40.000 4.29 0.00 0.00 3.41
973 1016 9.639601 GTATGCTATACTTCACTGCATATGTAA 57.360 33.333 4.29 0.00 44.72 2.41
985 1045 8.313292 TGCATGTATCATGTATGCTATACTTCA 58.687 33.333 19.47 6.80 45.53 3.02
992 1052 6.038356 CGAGATGCATGTATCATGTATGCTA 58.962 40.000 23.43 11.47 45.53 3.49
993 1053 4.868734 CGAGATGCATGTATCATGTATGCT 59.131 41.667 23.43 12.34 45.53 3.79
994 1054 4.628766 ACGAGATGCATGTATCATGTATGC 59.371 41.667 23.43 15.12 45.53 3.14
995 1055 6.098017 AGACGAGATGCATGTATCATGTATG 58.902 40.000 23.43 9.93 0.00 2.39
999 1059 5.228665 AGAAGACGAGATGCATGTATCATG 58.771 41.667 23.43 17.18 0.00 3.07
1000 1060 5.465532 AGAAGACGAGATGCATGTATCAT 57.534 39.130 23.43 10.13 0.00 2.45
1001 1061 4.261783 GGAGAAGACGAGATGCATGTATCA 60.262 45.833 23.43 0.08 0.00 2.15
1002 1062 4.022416 AGGAGAAGACGAGATGCATGTATC 60.022 45.833 15.28 15.28 0.00 2.24
1003 1063 3.894427 AGGAGAAGACGAGATGCATGTAT 59.106 43.478 2.46 0.00 0.00 2.29
1004 1064 3.291584 AGGAGAAGACGAGATGCATGTA 58.708 45.455 2.46 0.00 0.00 2.29
1005 1065 2.106566 AGGAGAAGACGAGATGCATGT 58.893 47.619 2.46 0.00 0.00 3.21
1006 1066 2.864946 CAAGGAGAAGACGAGATGCATG 59.135 50.000 2.46 0.00 0.00 4.06
1009 1069 2.949451 TCAAGGAGAAGACGAGATGC 57.051 50.000 0.00 0.00 0.00 3.91
1083 1155 8.098912 TCTACAAGGAAACCTAAAGTTATCACC 58.901 37.037 0.00 0.00 37.88 4.02
1089 1161 7.017254 TGGATCTCTACAAGGAAACCTAAAGTT 59.983 37.037 0.00 0.00 41.81 2.66
1092 1164 6.576442 GCTGGATCTCTACAAGGAAACCTAAA 60.576 42.308 0.00 0.00 31.13 1.85
1166 1253 2.664185 CCTGATCTCCGCGGCATG 60.664 66.667 23.51 13.37 0.00 4.06
1382 2090 1.676014 GCGCTGTGAGGTTCCTAATGT 60.676 52.381 0.00 0.00 0.00 2.71
1493 2342 9.267071 TGGTAGGCATATGATTTAGCTATTCTA 57.733 33.333 6.97 0.00 0.00 2.10
1499 2348 8.482852 AATTTTGGTAGGCATATGATTTAGCT 57.517 30.769 6.97 0.00 0.00 3.32
1534 2445 2.159128 CGCATCTCTCCATAGCCCATAG 60.159 54.545 0.00 0.00 0.00 2.23
1538 2449 1.294780 CCGCATCTCTCCATAGCCC 59.705 63.158 0.00 0.00 0.00 5.19
1539 2450 1.188219 TCCCGCATCTCTCCATAGCC 61.188 60.000 0.00 0.00 0.00 3.93
1541 2452 1.271934 CAGTCCCGCATCTCTCCATAG 59.728 57.143 0.00 0.00 0.00 2.23
1542 2453 1.332195 CAGTCCCGCATCTCTCCATA 58.668 55.000 0.00 0.00 0.00 2.74
1543 2454 2.037620 GCAGTCCCGCATCTCTCCAT 62.038 60.000 0.00 0.00 0.00 3.41
1544 2455 2.725312 GCAGTCCCGCATCTCTCCA 61.725 63.158 0.00 0.00 0.00 3.86
1546 2457 1.067250 GAGCAGTCCCGCATCTCTC 59.933 63.158 0.00 0.00 0.00 3.20
1547 2458 2.430610 GGAGCAGTCCCGCATCTCT 61.431 63.158 0.00 0.00 36.76 3.10
1548 2459 2.107953 GGAGCAGTCCCGCATCTC 59.892 66.667 0.00 0.00 36.76 2.75
1549 2460 3.842923 CGGAGCAGTCCCGCATCT 61.843 66.667 0.00 0.00 40.20 2.90
1562 2473 2.579787 GTCGTCATCACCGCGGAG 60.580 66.667 35.90 26.34 0.00 4.63
1563 2474 2.706834 ATGTCGTCATCACCGCGGA 61.707 57.895 35.90 11.57 0.00 5.54
1564 2475 2.202743 ATGTCGTCATCACCGCGG 60.203 61.111 26.86 26.86 0.00 6.46
1565 2476 2.997869 CATGTCGTCATCACCGCG 59.002 61.111 0.00 0.00 31.15 6.46
1566 2477 2.703409 GCATGTCGTCATCACCGC 59.297 61.111 0.00 0.00 31.15 5.68
1567 2478 2.997869 CGCATGTCGTCATCACCG 59.002 61.111 0.00 0.00 31.15 4.94
1568 2479 2.703409 GCGCATGTCGTCATCACC 59.297 61.111 0.30 0.00 41.07 4.02
1569 2480 2.703409 GGCGCATGTCGTCATCAC 59.297 61.111 10.83 0.00 43.43 3.06
1586 2497 4.189188 GAGCTGCGCAATGCCCTG 62.189 66.667 17.05 2.02 45.60 4.45
1587 2498 2.541547 TTAGAGCTGCGCAATGCCCT 62.542 55.000 17.05 13.67 45.60 5.19
1588 2499 2.056481 CTTAGAGCTGCGCAATGCCC 62.056 60.000 17.05 6.52 45.60 5.36
1589 2500 1.354506 CTTAGAGCTGCGCAATGCC 59.645 57.895 17.05 9.43 45.60 4.40
1590 2501 1.354506 CCTTAGAGCTGCGCAATGC 59.645 57.895 13.05 13.21 46.70 3.56
1591 2502 0.376152 CACCTTAGAGCTGCGCAATG 59.624 55.000 13.05 0.81 0.00 2.82
1592 2503 0.745845 CCACCTTAGAGCTGCGCAAT 60.746 55.000 13.05 2.16 0.00 3.56
1593 2504 1.375908 CCACCTTAGAGCTGCGCAA 60.376 57.895 13.05 0.00 0.00 4.85
1594 2505 2.265739 CCACCTTAGAGCTGCGCA 59.734 61.111 10.98 10.98 0.00 6.09
1595 2506 2.512515 CCCACCTTAGAGCTGCGC 60.513 66.667 0.00 0.00 0.00 6.09
1596 2507 2.512515 GCCCACCTTAGAGCTGCG 60.513 66.667 0.00 0.00 0.00 5.18
1597 2508 1.746991 GTGCCCACCTTAGAGCTGC 60.747 63.158 0.00 0.00 0.00 5.25
1598 2509 0.392193 CTGTGCCCACCTTAGAGCTG 60.392 60.000 0.00 0.00 0.00 4.24
1599 2510 1.557269 CCTGTGCCCACCTTAGAGCT 61.557 60.000 0.00 0.00 0.00 4.09
1600 2511 1.078143 CCTGTGCCCACCTTAGAGC 60.078 63.158 0.00 0.00 0.00 4.09
1601 2512 1.604378 CCCTGTGCCCACCTTAGAG 59.396 63.158 0.00 0.00 0.00 2.43
1602 2513 2.602676 GCCCTGTGCCCACCTTAGA 61.603 63.158 0.00 0.00 0.00 2.10
1603 2514 2.044946 GCCCTGTGCCCACCTTAG 60.045 66.667 0.00 0.00 0.00 2.18
1604 2515 4.028490 CGCCCTGTGCCCACCTTA 62.028 66.667 0.00 0.00 36.24 2.69
1608 2519 3.665675 CTACTCGCCCTGTGCCCAC 62.666 68.421 0.00 0.00 36.24 4.61
1609 2520 3.390521 CTACTCGCCCTGTGCCCA 61.391 66.667 0.00 0.00 36.24 5.36
1610 2521 3.372554 GACTACTCGCCCTGTGCCC 62.373 68.421 0.00 0.00 36.24 5.36
1611 2522 2.184579 GACTACTCGCCCTGTGCC 59.815 66.667 0.00 0.00 36.24 5.01
1612 2523 1.446272 GTGACTACTCGCCCTGTGC 60.446 63.158 0.00 0.00 0.00 4.57
1613 2524 0.532573 ATGTGACTACTCGCCCTGTG 59.467 55.000 0.00 0.00 0.00 3.66
1614 2525 2.025155 CTATGTGACTACTCGCCCTGT 58.975 52.381 0.00 0.00 0.00 4.00
1615 2526 2.025155 ACTATGTGACTACTCGCCCTG 58.975 52.381 0.00 0.00 0.00 4.45
1616 2527 2.025155 CACTATGTGACTACTCGCCCT 58.975 52.381 0.00 0.00 35.23 5.19
1617 2528 1.749634 ACACTATGTGACTACTCGCCC 59.250 52.381 4.61 0.00 36.96 6.13
1629 2540 1.112113 CTCTACCCGGCACACTATGT 58.888 55.000 0.00 0.00 0.00 2.29
1630 2541 1.112113 ACTCTACCCGGCACACTATG 58.888 55.000 0.00 0.00 0.00 2.23
1631 2542 1.861982 AACTCTACCCGGCACACTAT 58.138 50.000 0.00 0.00 0.00 2.12
1632 2543 2.372264 CTAACTCTACCCGGCACACTA 58.628 52.381 0.00 0.00 0.00 2.74
1633 2544 1.183549 CTAACTCTACCCGGCACACT 58.816 55.000 0.00 0.00 0.00 3.55
1634 2545 0.175073 CCTAACTCTACCCGGCACAC 59.825 60.000 0.00 0.00 0.00 3.82
1635 2546 0.251922 ACCTAACTCTACCCGGCACA 60.252 55.000 0.00 0.00 0.00 4.57
1636 2547 0.175073 CACCTAACTCTACCCGGCAC 59.825 60.000 0.00 0.00 0.00 5.01
1637 2548 0.974010 CCACCTAACTCTACCCGGCA 60.974 60.000 0.00 0.00 0.00 5.69
1638 2549 0.685458 TCCACCTAACTCTACCCGGC 60.685 60.000 0.00 0.00 0.00 6.13
1639 2550 1.400737 CTCCACCTAACTCTACCCGG 58.599 60.000 0.00 0.00 0.00 5.73
1640 2551 0.745468 GCTCCACCTAACTCTACCCG 59.255 60.000 0.00 0.00 0.00 5.28
1641 2552 1.757699 CAGCTCCACCTAACTCTACCC 59.242 57.143 0.00 0.00 0.00 3.69
1642 2553 1.757699 CCAGCTCCACCTAACTCTACC 59.242 57.143 0.00 0.00 0.00 3.18
1643 2554 1.137282 GCCAGCTCCACCTAACTCTAC 59.863 57.143 0.00 0.00 0.00 2.59
1644 2555 1.486211 GCCAGCTCCACCTAACTCTA 58.514 55.000 0.00 0.00 0.00 2.43
1645 2556 1.608717 CGCCAGCTCCACCTAACTCT 61.609 60.000 0.00 0.00 0.00 3.24
1646 2557 1.153549 CGCCAGCTCCACCTAACTC 60.154 63.158 0.00 0.00 0.00 3.01
1647 2558 1.913762 ACGCCAGCTCCACCTAACT 60.914 57.895 0.00 0.00 0.00 2.24
1648 2559 1.741770 CACGCCAGCTCCACCTAAC 60.742 63.158 0.00 0.00 0.00 2.34
1649 2560 2.662596 CACGCCAGCTCCACCTAA 59.337 61.111 0.00 0.00 0.00 2.69
1650 2561 3.390521 CCACGCCAGCTCCACCTA 61.391 66.667 0.00 0.00 0.00 3.08
1656 2567 3.612247 ATGACACCCACGCCAGCTC 62.612 63.158 0.00 0.00 0.00 4.09
1657 2568 3.640407 ATGACACCCACGCCAGCT 61.640 61.111 0.00 0.00 0.00 4.24
1658 2569 2.796483 TACATGACACCCACGCCAGC 62.796 60.000 0.00 0.00 0.00 4.85
1659 2570 0.740868 CTACATGACACCCACGCCAG 60.741 60.000 0.00 0.00 0.00 4.85
1660 2571 1.295101 CTACATGACACCCACGCCA 59.705 57.895 0.00 0.00 0.00 5.69
1661 2572 2.106683 GCTACATGACACCCACGCC 61.107 63.158 0.00 0.00 0.00 5.68
1662 2573 2.106683 GGCTACATGACACCCACGC 61.107 63.158 0.00 0.00 0.00 5.34
1663 2574 0.107703 ATGGCTACATGACACCCACG 60.108 55.000 0.00 0.00 35.90 4.94
1664 2575 3.882131 ATGGCTACATGACACCCAC 57.118 52.632 0.00 0.00 35.90 4.61
1673 2584 3.902218 AGTTTACATGGCATGGCTACAT 58.098 40.909 29.49 11.43 37.99 2.29
1674 2585 3.364460 AGTTTACATGGCATGGCTACA 57.636 42.857 29.49 6.18 33.60 2.74
1675 2586 6.208644 CAAATAGTTTACATGGCATGGCTAC 58.791 40.000 29.49 21.72 33.60 3.58
1676 2587 5.301551 CCAAATAGTTTACATGGCATGGCTA 59.698 40.000 29.49 22.89 33.60 3.93
1677 2588 4.099881 CCAAATAGTTTACATGGCATGGCT 59.900 41.667 29.49 21.72 33.60 4.75
1678 2589 4.370917 CCAAATAGTTTACATGGCATGGC 58.629 43.478 29.49 13.29 33.60 4.40
1679 2590 4.202243 CCCCAAATAGTTTACATGGCATGG 60.202 45.833 29.49 13.03 33.60 3.66
1680 2591 4.740334 GCCCCAAATAGTTTACATGGCATG 60.740 45.833 25.31 25.31 36.40 4.06
1681 2592 3.387699 GCCCCAAATAGTTTACATGGCAT 59.612 43.478 0.00 0.00 36.40 4.40
1682 2593 2.763448 GCCCCAAATAGTTTACATGGCA 59.237 45.455 0.00 0.00 36.40 4.92
1683 2594 3.031013 AGCCCCAAATAGTTTACATGGC 58.969 45.455 0.00 0.00 36.62 4.40
1684 2595 4.536765 AGAGCCCCAAATAGTTTACATGG 58.463 43.478 0.00 0.00 0.00 3.66
1685 2596 6.405842 GGAAAGAGCCCCAAATAGTTTACATG 60.406 42.308 0.00 0.00 0.00 3.21
1686 2597 5.656859 GGAAAGAGCCCCAAATAGTTTACAT 59.343 40.000 0.00 0.00 0.00 2.29
1687 2598 5.014202 GGAAAGAGCCCCAAATAGTTTACA 58.986 41.667 0.00 0.00 0.00 2.41
1688 2599 4.401519 GGGAAAGAGCCCCAAATAGTTTAC 59.598 45.833 0.00 0.00 42.62 2.01
1689 2600 4.606210 GGGAAAGAGCCCCAAATAGTTTA 58.394 43.478 0.00 0.00 42.62 2.01
1690 2601 3.441101 GGGAAAGAGCCCCAAATAGTTT 58.559 45.455 0.00 0.00 42.62 2.66
1691 2602 3.101643 GGGAAAGAGCCCCAAATAGTT 57.898 47.619 0.00 0.00 42.62 2.24
1692 2603 2.828661 GGGAAAGAGCCCCAAATAGT 57.171 50.000 0.00 0.00 42.62 2.12
1701 2612 1.912731 AGAGAAGAAGGGGAAAGAGCC 59.087 52.381 0.00 0.00 0.00 4.70
1702 2613 3.712016 AAGAGAAGAAGGGGAAAGAGC 57.288 47.619 0.00 0.00 0.00 4.09
1703 2614 8.312669 TCTATTAAGAGAAGAAGGGGAAAGAG 57.687 38.462 0.00 0.00 0.00 2.85
1704 2615 8.709308 CATCTATTAAGAGAAGAAGGGGAAAGA 58.291 37.037 3.51 0.00 34.49 2.52
1705 2616 8.709308 TCATCTATTAAGAGAAGAAGGGGAAAG 58.291 37.037 3.51 0.00 34.49 2.62
1706 2617 8.624019 TCATCTATTAAGAGAAGAAGGGGAAA 57.376 34.615 3.51 0.00 34.49 3.13
1707 2618 8.805145 ATCATCTATTAAGAGAAGAAGGGGAA 57.195 34.615 8.90 0.00 34.49 3.97
1708 2619 9.315363 GTATCATCTATTAAGAGAAGAAGGGGA 57.685 37.037 8.90 0.00 34.49 4.81
1709 2620 8.247562 CGTATCATCTATTAAGAGAAGAAGGGG 58.752 40.741 8.90 0.00 34.49 4.79
1710 2621 7.757624 GCGTATCATCTATTAAGAGAAGAAGGG 59.242 40.741 8.90 3.27 34.49 3.95
1711 2622 8.300286 TGCGTATCATCTATTAAGAGAAGAAGG 58.700 37.037 8.90 6.17 34.49 3.46
1712 2623 9.123709 GTGCGTATCATCTATTAAGAGAAGAAG 57.876 37.037 8.90 5.60 34.49 2.85
1713 2624 8.851145 AGTGCGTATCATCTATTAAGAGAAGAA 58.149 33.333 8.90 0.00 34.49 2.52
1714 2625 8.397575 AGTGCGTATCATCTATTAAGAGAAGA 57.602 34.615 7.43 7.43 34.49 2.87
1715 2626 8.511321 AGAGTGCGTATCATCTATTAAGAGAAG 58.489 37.037 3.51 0.00 34.49 2.85
1716 2627 8.397575 AGAGTGCGTATCATCTATTAAGAGAA 57.602 34.615 3.51 0.00 34.49 2.87
1717 2628 7.987750 AGAGTGCGTATCATCTATTAAGAGA 57.012 36.000 1.60 1.60 34.49 3.10
1718 2629 8.941977 ACTAGAGTGCGTATCATCTATTAAGAG 58.058 37.037 0.00 0.00 34.49 2.85
1719 2630 8.722394 CACTAGAGTGCGTATCATCTATTAAGA 58.278 37.037 0.00 0.00 39.39 2.10
1720 2631 8.888332 CACTAGAGTGCGTATCATCTATTAAG 57.112 38.462 0.00 0.00 39.39 1.85
1759 2670 1.773653 TGGCTGCCTTTCCCAATTTTT 59.226 42.857 21.03 0.00 0.00 1.94
1760 2671 1.072173 GTGGCTGCCTTTCCCAATTTT 59.928 47.619 21.03 0.00 0.00 1.82
1761 2672 0.686789 GTGGCTGCCTTTCCCAATTT 59.313 50.000 21.03 0.00 0.00 1.82
1762 2673 1.535204 CGTGGCTGCCTTTCCCAATT 61.535 55.000 21.03 0.00 0.00 2.32
1763 2674 1.978617 CGTGGCTGCCTTTCCCAAT 60.979 57.895 21.03 0.00 0.00 3.16
1764 2675 2.597217 CGTGGCTGCCTTTCCCAA 60.597 61.111 21.03 0.00 0.00 4.12
1765 2676 3.884774 ACGTGGCTGCCTTTCCCA 61.885 61.111 21.03 0.00 0.00 4.37
1766 2677 3.365265 CACGTGGCTGCCTTTCCC 61.365 66.667 21.03 1.79 0.00 3.97
1767 2678 3.365265 CCACGTGGCTGCCTTTCC 61.365 66.667 24.02 4.30 0.00 3.13
1858 2775 8.962884 AGGCTTAAAAATTGACACAAGATTTT 57.037 26.923 0.00 0.00 35.22 1.82
1859 2776 9.696917 CTAGGCTTAAAAATTGACACAAGATTT 57.303 29.630 0.00 0.00 0.00 2.17
1860 2777 7.814587 GCTAGGCTTAAAAATTGACACAAGATT 59.185 33.333 0.00 0.00 0.00 2.40
1861 2778 7.039784 TGCTAGGCTTAAAAATTGACACAAGAT 60.040 33.333 0.00 0.00 0.00 2.40
1863 2780 6.446318 TGCTAGGCTTAAAAATTGACACAAG 58.554 36.000 0.00 0.00 0.00 3.16
1864 2781 6.398234 TGCTAGGCTTAAAAATTGACACAA 57.602 33.333 0.00 0.00 0.00 3.33
1865 2782 6.398234 TTGCTAGGCTTAAAAATTGACACA 57.602 33.333 0.00 0.00 0.00 3.72
1866 2783 6.145534 GGTTTGCTAGGCTTAAAAATTGACAC 59.854 38.462 0.00 0.00 0.00 3.67
1868 2785 6.220201 TGGTTTGCTAGGCTTAAAAATTGAC 58.780 36.000 0.00 0.00 0.00 3.18
1869 2786 6.412362 TGGTTTGCTAGGCTTAAAAATTGA 57.588 33.333 0.00 0.00 0.00 2.57
1870 2787 7.351981 GTTTGGTTTGCTAGGCTTAAAAATTG 58.648 34.615 0.00 0.00 0.00 2.32
1882 2799 1.402720 CCATGGCGTTTGGTTTGCTAG 60.403 52.381 0.00 0.00 0.00 3.42
1910 2827 3.279434 AGGAAATTGTTATCCCTGCGAC 58.721 45.455 0.00 0.00 36.31 5.19
1914 2831 7.415653 GCTTACTTGAGGAAATTGTTATCCCTG 60.416 40.741 0.00 0.00 36.31 4.45
1916 2833 6.377146 TGCTTACTTGAGGAAATTGTTATCCC 59.623 38.462 0.00 0.00 36.31 3.85
1932 2849 6.389091 TCAGTATTTTTGCCATGCTTACTTG 58.611 36.000 0.00 0.00 0.00 3.16
1950 2867 3.641434 AATCCTTGCACTGCTCAGTAT 57.359 42.857 1.79 0.00 40.20 2.12
1951 2868 3.076621 CAAATCCTTGCACTGCTCAGTA 58.923 45.455 1.79 0.00 40.20 2.74
2001 2933 5.866633 GGAATGACAAATTATTTTGCCACGA 59.133 36.000 9.46 0.00 45.01 4.35
2022 2954 1.410517 TGCCAAATCAAACGCTTGGAA 59.589 42.857 4.28 0.00 41.88 3.53
2023 2955 1.035923 TGCCAAATCAAACGCTTGGA 58.964 45.000 4.28 0.00 41.88 3.53
2030 2962 5.421212 TTTTTCAGCATGCCAAATCAAAC 57.579 34.783 15.66 0.00 34.76 2.93
2040 2972 2.747396 TGGTGGATTTTTCAGCATGC 57.253 45.000 10.51 10.51 37.65 4.06
2057 2989 4.173256 GGATTTTGCTACAAACCGAATGG 58.827 43.478 0.00 0.00 42.84 3.16
2059 2991 5.461032 TTGGATTTTGCTACAAACCGAAT 57.539 34.783 0.00 0.00 0.00 3.34
2073 3005 4.470334 AAGCCGCATACATTTGGATTTT 57.530 36.364 0.00 0.00 0.00 1.82
2089 3021 1.949525 CATCCTTTGGGACATAAGCCG 59.050 52.381 0.00 0.00 45.43 5.52
2101 3034 1.889829 TGTTAAACCGGCCATCCTTTG 59.110 47.619 0.00 0.00 0.00 2.77
2184 3128 5.446206 CCGTTTTTACAACGTCTTGAAGTCA 60.446 40.000 3.02 0.00 41.64 3.41
2185 3129 4.959757 CCGTTTTTACAACGTCTTGAAGTC 59.040 41.667 3.02 0.00 41.64 3.01
2186 3130 4.630940 TCCGTTTTTACAACGTCTTGAAGT 59.369 37.500 3.02 0.00 41.64 3.01
2187 3131 5.146482 TCCGTTTTTACAACGTCTTGAAG 57.854 39.130 3.02 0.00 41.64 3.02
2202 3151 9.416284 ACATCCCATATATTTACTTTCCGTTTT 57.584 29.630 0.00 0.00 0.00 2.43
2206 3156 7.573096 GCACACATCCCATATATTTACTTTCCG 60.573 40.741 0.00 0.00 0.00 4.30
2207 3157 7.230510 TGCACACATCCCATATATTTACTTTCC 59.769 37.037 0.00 0.00 0.00 3.13
2208 3158 8.165239 TGCACACATCCCATATATTTACTTTC 57.835 34.615 0.00 0.00 0.00 2.62
2209 3159 8.710749 ATGCACACATCCCATATATTTACTTT 57.289 30.769 0.00 0.00 0.00 2.66
2210 3160 8.340618 GATGCACACATCCCATATATTTACTT 57.659 34.615 0.00 0.00 45.94 2.24
2211 3161 7.928307 GATGCACACATCCCATATATTTACT 57.072 36.000 0.00 0.00 45.94 2.24
2281 3231 2.200899 ACAGTTTGTTTGCGCAATTCC 58.799 42.857 25.64 15.18 0.00 3.01
2393 3475 9.780186 AAATGCCTAAGGACTAATAATCTACAC 57.220 33.333 0.00 0.00 0.00 2.90
2539 3624 5.045213 TCCTATGTGGTTGCTAAATTCCTGA 60.045 40.000 0.00 0.00 37.07 3.86
2654 3740 4.222124 AGGAGTGTGTACATTTGGATCC 57.778 45.455 4.20 4.20 0.00 3.36
2677 3786 7.101054 TGCGTTAGTCATAAAACTGGTTAGAT 58.899 34.615 0.00 0.00 0.00 1.98
2700 3809 3.989817 CCCTGTGTAAGAAAATTGCTTGC 59.010 43.478 0.00 0.00 0.00 4.01
2759 3868 2.698855 TTGCTTAGATCCACCTCTGC 57.301 50.000 0.00 0.00 0.00 4.26
3123 4526 8.873215 TGCTAGATTCAAACTAGTAATACTGC 57.127 34.615 2.68 0.00 39.36 4.40
3172 4578 4.104261 TCTGGTAGATATCCAAGGACTCGA 59.896 45.833 0.00 0.00 34.35 4.04
3174 4580 5.836358 AGTTCTGGTAGATATCCAAGGACTC 59.164 44.000 0.00 0.00 34.35 3.36
3182 4588 7.123547 CAGATTCCCTAGTTCTGGTAGATATCC 59.876 44.444 0.00 0.00 34.55 2.59
3203 4609 5.369409 TGATTGCAAGAGAGATCCAGATT 57.631 39.130 4.94 0.00 0.00 2.40
3206 4612 6.095021 TGAATTTGATTGCAAGAGAGATCCAG 59.905 38.462 4.94 0.00 35.04 3.86
3247 4653 3.256631 AGCTCATGTTTGTCCAAATCCAC 59.743 43.478 0.00 0.00 32.36 4.02
3258 4664 3.057736 CAGGTTCAAGGAGCTCATGTTTG 60.058 47.826 17.19 13.47 0.00 2.93
3334 4740 8.256605 AGCATATTGAAGCTAAGATCGATGTAT 58.743 33.333 0.54 0.00 39.78 2.29
3469 4878 2.749044 CCGGACCGTTCGAGGAGA 60.749 66.667 13.94 0.00 34.73 3.71
3538 4947 3.017442 CTCACGACATTCTGAGTAGGGA 58.983 50.000 0.00 0.00 30.97 4.20
3625 5037 2.793278 GTTGACCGCAACCTTTCAAT 57.207 45.000 0.00 0.00 46.80 2.57
3678 5090 3.499737 CGTCAGGCCATGTTCCGC 61.500 66.667 5.01 0.00 0.00 5.54
3822 5234 5.097234 CCATCCATATAGGGAAAGAGTCCT 58.903 45.833 10.70 0.00 46.92 3.85
3847 5259 2.509336 CGGAGTTGCGGTAGCTGG 60.509 66.667 0.00 0.00 45.42 4.85
3871 5283 8.492748 CCATGAAAATTGTTGTTTCTCAAGATG 58.507 33.333 0.00 0.00 36.66 2.90
4041 5453 1.126846 CTGCAATCGTTCTGTTCGGAC 59.873 52.381 0.00 0.00 0.00 4.79
4094 5506 7.428826 GCCACCAGATAAGAAATAAATCCTTG 58.571 38.462 0.00 0.00 0.00 3.61
4282 5694 1.811266 CTCACGTGGGATCTTGCCG 60.811 63.158 10.82 0.00 0.00 5.69
4297 5709 3.240134 GACCAACTGGCCGAGCTCA 62.240 63.158 15.40 0.00 39.32 4.26
4314 5726 1.030488 GTCCAGTGACTCGATCCGGA 61.030 60.000 6.61 6.61 38.53 5.14
4357 5769 0.825425 CTAGCTCCTGCGGGATCTCA 60.825 60.000 21.14 7.62 45.42 3.27
4540 5952 1.816835 AGCGACGAAGATGGTGAAGTA 59.183 47.619 0.00 0.00 0.00 2.24
4572 5984 1.328680 CAAATGGTGATCCTTCTCGCG 59.671 52.381 0.00 0.00 34.23 5.87
4675 6087 0.838229 CTATTTTCTCGCGACGACCG 59.162 55.000 3.71 0.00 42.21 4.79
4701 6114 3.438297 GGCAACTACTTCATCTAGCGA 57.562 47.619 0.00 0.00 0.00 4.93
4754 6171 2.095110 CCTTCGCTCATGAAATTGCACA 60.095 45.455 0.00 0.00 0.00 4.57
4758 6175 4.424061 TCAACCTTCGCTCATGAAATTG 57.576 40.909 0.00 0.00 0.00 2.32
4774 6191 6.841119 TCGTATATATTGCATGCATTCAACC 58.159 36.000 23.37 6.41 0.00 3.77
4775 6192 7.521529 ACTCGTATATATTGCATGCATTCAAC 58.478 34.615 23.37 13.69 0.00 3.18
4776 6193 7.603784 AGACTCGTATATATTGCATGCATTCAA 59.396 33.333 23.37 14.14 0.00 2.69
4777 6194 7.099120 AGACTCGTATATATTGCATGCATTCA 58.901 34.615 23.37 7.20 0.00 2.57
4778 6195 7.531280 AGACTCGTATATATTGCATGCATTC 57.469 36.000 23.37 2.84 0.00 2.67
4793 6224 7.406031 TCTGGTCATTTCTTTAGACTCGTAT 57.594 36.000 0.00 0.00 32.98 3.06
5331 7076 7.514127 AGAGATGGAACTTGGGCTATTCTTATA 59.486 37.037 0.00 0.00 0.00 0.98
5356 7101 1.981254 CCATTGGCGTGCTTTACAAG 58.019 50.000 0.00 0.00 0.00 3.16
5448 7193 3.002791 ACGTTGCTATCTCACCATGTTG 58.997 45.455 0.00 0.00 0.00 3.33
5455 7200 4.099120 CAGAGTACACGTTGCTATCTCAC 58.901 47.826 0.00 0.00 0.00 3.51
5456 7201 3.756963 ACAGAGTACACGTTGCTATCTCA 59.243 43.478 0.00 0.00 0.00 3.27
5457 7202 4.358494 ACAGAGTACACGTTGCTATCTC 57.642 45.455 0.00 0.00 0.00 2.75
5458 7203 4.785511 AACAGAGTACACGTTGCTATCT 57.214 40.909 0.00 0.00 0.00 1.98
5459 7204 5.035443 CCTAACAGAGTACACGTTGCTATC 58.965 45.833 0.00 0.00 0.00 2.08
5460 7205 4.461781 ACCTAACAGAGTACACGTTGCTAT 59.538 41.667 0.00 0.00 0.00 2.97
5461 7206 3.822735 ACCTAACAGAGTACACGTTGCTA 59.177 43.478 0.00 0.00 0.00 3.49
5462 7207 2.626743 ACCTAACAGAGTACACGTTGCT 59.373 45.455 0.00 0.00 0.00 3.91
5463 7208 3.022607 ACCTAACAGAGTACACGTTGC 57.977 47.619 0.00 0.00 0.00 4.17
5464 7209 7.008992 GCTAATTACCTAACAGAGTACACGTTG 59.991 40.741 0.00 0.00 0.00 4.10
5465 7210 7.031975 GCTAATTACCTAACAGAGTACACGTT 58.968 38.462 0.00 1.05 0.00 3.99
5466 7211 6.405176 GGCTAATTACCTAACAGAGTACACGT 60.405 42.308 0.00 0.00 0.00 4.49
5467 7212 5.975939 GGCTAATTACCTAACAGAGTACACG 59.024 44.000 0.00 0.00 0.00 4.49
5468 7213 6.870769 TGGCTAATTACCTAACAGAGTACAC 58.129 40.000 0.00 0.00 0.00 2.90
5469 7214 6.893554 TCTGGCTAATTACCTAACAGAGTACA 59.106 38.462 0.00 0.00 0.00 2.90
5470 7215 7.344095 TCTGGCTAATTACCTAACAGAGTAC 57.656 40.000 0.00 0.00 0.00 2.73
5471 7216 8.548880 AATCTGGCTAATTACCTAACAGAGTA 57.451 34.615 0.00 0.00 36.99 2.59
5472 7217 7.439108 AATCTGGCTAATTACCTAACAGAGT 57.561 36.000 0.00 0.00 36.99 3.24
5473 7218 8.207545 AGAAATCTGGCTAATTACCTAACAGAG 58.792 37.037 0.00 0.00 36.99 3.35
5474 7219 8.090788 AGAAATCTGGCTAATTACCTAACAGA 57.909 34.615 0.00 0.00 37.81 3.41
5475 7220 8.738645 AAGAAATCTGGCTAATTACCTAACAG 57.261 34.615 5.91 0.00 0.00 3.16
5476 7221 9.528489 AAAAGAAATCTGGCTAATTACCTAACA 57.472 29.630 5.91 0.00 0.00 2.41
5566 7311 2.430694 TGCGTATGTGCTAGATGTTCCT 59.569 45.455 0.00 0.00 35.36 3.36
5582 7327 4.095334 ACACGTTCTCTACACATATGCGTA 59.905 41.667 1.58 2.79 0.00 4.42
5589 7334 5.183331 ACAGATACACACGTTCTCTACACAT 59.817 40.000 0.00 0.00 0.00 3.21
5593 7338 5.696822 TGAACAGATACACACGTTCTCTAC 58.303 41.667 0.00 0.00 38.80 2.59
5594 7339 5.952526 TGAACAGATACACACGTTCTCTA 57.047 39.130 0.00 0.00 38.80 2.43
5595 7340 4.848562 TGAACAGATACACACGTTCTCT 57.151 40.909 0.00 0.00 38.80 3.10
5597 7342 4.883083 ACATGAACAGATACACACGTTCT 58.117 39.130 0.00 0.00 38.80 3.01
5602 7347 3.367932 CACGGACATGAACAGATACACAC 59.632 47.826 0.00 0.00 0.00 3.82
5608 7353 1.002430 AGCACACGGACATGAACAGAT 59.998 47.619 0.00 0.00 0.00 2.90
5621 7366 1.153745 GGCTCAGTCCTAGCACACG 60.154 63.158 0.00 0.00 41.93 4.49
5622 7367 0.539051 ATGGCTCAGTCCTAGCACAC 59.461 55.000 0.00 0.00 41.93 3.82
5638 7383 8.616076 CATACTCAAAGAAAACTAGCCTTATGG 58.384 37.037 0.00 0.00 0.00 2.74
5656 7401 6.326323 TCTGTACATGGGCTTATCATACTCAA 59.674 38.462 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.