AutoCloner

Multiple sequence alignment - TraesCS6A01G349900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G349900	chr6A	100.000	2515	0	0	1	2515	581971866	581969352	0.000000e+00	4645.0
1	TraesCS6A01G349900	chr6A	95.017	582	29	0	6	587	28356153	28356734	0.000000e+00	915.0
2	TraesCS6A01G349900	chr6A	93.171	410	24	3	587	993	547338746	547339154	1.290000e-167	599.0
3	TraesCS6A01G349900	chr6A	94.194	155	7	2	1669	1822	581970145	581969992	4.180000e-58	235.0
4	TraesCS6A01G349900	chr6A	94.194	155	7	2	1722	1875	581970198	581970045	4.180000e-58	235.0
5	TraesCS6A01G349900	chr6A	93.137	102	6	1	1669	1770	581970092	581969992	5.610000e-32	148.0
6	TraesCS6A01G349900	chr6A	93.137	102	6	1	1775	1875	581970198	581970097	5.610000e-32	148.0
7	TraesCS6A01G349900	chr4A	93.854	1871	86	14	587	2431	684215980	684217847	0.000000e+00	2791.0
8	TraesCS6A01G349900	chr4A	85.484	434	54	6	6	431	387098124	387098556	6.380000e-121	444.0
9	TraesCS6A01G349900	chr7A	94.017	1287	72	5	587	1871	624797502	624798785	0.000000e+00	1945.0
10	TraesCS6A01G349900	chr7A	94.540	348	19	0	6	353	118445644	118445991	2.850000e-149	538.0
11	TraesCS6A01G349900	chr7A	97.222	180	5	0	408	587	118445989	118446168	3.140000e-79	305.0
12	TraesCS6A01G349900	chr7A	84.536	97	13	2	1776	1871	624798586	624798681	7.410000e-16	95.3
13	TraesCS6A01G349900	chr2A	93.726	1291	71	9	587	1871	87812064	87813350	0.000000e+00	1927.0
14	TraesCS6A01G349900	chr2A	89.936	785	53	12	1669	2431	87813202	87813982	0.000000e+00	989.0
15	TraesCS6A01G349900	chr2A	93.850	374	20	3	586	957	617758064	617757692	6.080000e-156	560.0
16	TraesCS6A01G349900	chr2A	79.005	643	106	12	593	1214	705536579	705535945	1.800000e-111	412.0
17	TraesCS6A01G349900	chr2A	83.117	154	19	7	1721	1871	87813148	87813297	1.570000e-27	134.0
18	TraesCS6A01G349900	chr2A	89.899	99	8	2	1774	1871	87813148	87813245	2.630000e-25	126.0
19	TraesCS6A01G349900	chr2D	93.451	1298	69	11	584	1875	645767901	645766614	0.000000e+00	1912.0
20	TraesCS6A01G349900	chr2D	91.723	1184	78	9	588	1769	596256014	596257179	0.000000e+00	1626.0
21	TraesCS6A01G349900	chr2D	88.861	799	48	11	1669	2431	645766767	645765974	0.000000e+00	944.0
22	TraesCS6A01G349900	chr2D	89.581	739	65	10	1702	2431	596257060	596257795	0.000000e+00	928.0
23	TraesCS6A01G349900	chr2D	88.776	98	8	3	1774	1869	645766822	645766726	1.580000e-22	117.0
24	TraesCS6A01G349900	chr2D	82.906	117	17	3	1755	1870	596257060	596257174	4.430000e-18	102.0
25	TraesCS6A01G349900	chr2B	87.615	1300	126	15	587	1869	765756818	765755537	0.000000e+00	1476.0
26	TraesCS6A01G349900	chr2B	87.291	779	72	14	1675	2431	765755677	765754904	0.000000e+00	865.0
27	TraesCS6A01G349900	chr5A	94.128	579	23	1	9	587	619130649	619130082	0.000000e+00	870.0
28	TraesCS6A01G349900	chr5A	93.130	524	33	2	588	1108	705355219	705355742	0.000000e+00	765.0
29	TraesCS6A01G349900	chr3A	85.763	590	77	5	1	587	31825258	31824673	3.550000e-173	617.0
30	TraesCS6A01G349900	chr1D	86.311	431	57	2	6	434	124917134	124917564	3.790000e-128	468.0
31	TraesCS6A01G349900	chr3D	86.183	427	55	4	8	432	104824792	104824368	2.280000e-125	459.0
32	TraesCS6A01G349900	chr7D	86.150	426	53	3	7	430	461246306	461246727	2.950000e-124	455.0
33	TraesCS6A01G349900	chr7D	86.585	164	14	5	431	587	629559349	629559511	9.250000e-40	174.0
34	TraesCS6A01G349900	chr4B	84.615	442	58	6	6	441	506914927	506915364	4.970000e-117	431.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G349900	chr6A	581969352	581971866	2514	True	1082.200000	4645	94.932400	1	2515	5	chr6A.!!$R1	2514
1	TraesCS6A01G349900	chr6A	28356153	28356734	581	False	915.000000	915	95.017000	6	587	1	chr6A.!!$F1	581
2	TraesCS6A01G349900	chr4A	684215980	684217847	1867	False	2791.000000	2791	93.854000	587	2431	1	chr4A.!!$F2	1844
3	TraesCS6A01G349900	chr7A	624797502	624798785	1283	False	1020.150000	1945	89.276500	587	1871	2	chr7A.!!$F2	1284
4	TraesCS6A01G349900	chr7A	118445644	118446168	524	False	421.500000	538	95.881000	6	587	2	chr7A.!!$F1	581
5	TraesCS6A01G349900	chr2A	87812064	87813982	1918	False	794.000000	1927	89.169500	587	2431	4	chr2A.!!$F1	1844
6	TraesCS6A01G349900	chr2A	705535945	705536579	634	True	412.000000	412	79.005000	593	1214	1	chr2A.!!$R2	621
7	TraesCS6A01G349900	chr2D	645765974	645767901	1927	True	991.000000	1912	90.362667	584	2431	3	chr2D.!!$R1	1847
8	TraesCS6A01G349900	chr2D	596256014	596257795	1781	False	885.333333	1626	88.070000	588	2431	3	chr2D.!!$F1	1843
9	TraesCS6A01G349900	chr2B	765754904	765756818	1914	True	1170.500000	1476	87.453000	587	2431	2	chr2B.!!$R1	1844
10	TraesCS6A01G349900	chr5A	619130082	619130649	567	True	870.000000	870	94.128000	9	587	1	chr5A.!!$R1	578
11	TraesCS6A01G349900	chr5A	705355219	705355742	523	False	765.000000	765	93.130000	588	1108	1	chr5A.!!$F1	520
12	TraesCS6A01G349900	chr3A	31824673	31825258	585	True	617.000000	617	85.763000	1	587	1	chr3A.!!$R1	586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
132	133	0.106708	GGCTCTCATTGCCCATCGTA	59.893	55.0	0.0	0.0	44.32	3.43	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1678	1708	0.465705	ATCAATGTGGACGATCGCCT	59.534	50.0	22.99	4.17	0.0	5.52	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
66	67	5.409826	GTGAAAACCTGTTCGATCTTCAGAT	59.590	40.000	9.25	0.00	37.51	2.90
71	72	3.131933	CCTGTTCGATCTTCAGATGGACT	59.868	47.826	1.28	0.00	38.66	3.85
132	133	0.106708	GGCTCTCATTGCCCATCGTA	59.893	55.000	0.00	0.00	44.32	3.43
172	173	0.544357	ATTCTCAGGTCGGGTGGTGA	60.544	55.000	0.00	0.00	0.00	4.02
188	189	1.131638	GTGATGGCCCTCTGGTATCA	58.868	55.000	9.61	2.60	36.00	2.15
199	200	5.403512	CCCTCTGGTATCATAACCTTCCTA	58.596	45.833	0.00	0.00	40.44	2.94
304	305	2.180276	CTCTTGTAGTGCTAGGGGTGT	58.820	52.381	0.00	0.00	0.00	4.16
374	376	1.011333	GCGGTGGCGTGTATTTGTAT	58.989	50.000	0.00	0.00	0.00	2.29
394	397	2.559698	TGGTTGTGGATGATCGTTGT	57.440	45.000	0.00	0.00	0.00	3.32
462	465	3.631227	CCACAACCCACAATGCAAAATTT	59.369	39.130	0.00	0.00	0.00	1.82
995	1020	1.810151	GGTGCAAGCTCCAATTTCGTA	59.190	47.619	8.19	0.00	0.00	3.43
1066	1094	1.428448	TGTGCTCCGTTCGAAATCTG	58.572	50.000	0.00	0.00	0.00	2.90
1294	1323	5.387788	TGGCCACATATCTATTGCAAGAAT	58.612	37.500	0.00	0.72	0.00	2.40
1382	1411	3.456277	AGGAAGACAGAGGTGTTGAAGTT	59.544	43.478	0.00	0.00	36.88	2.66
1598	1627	6.225318	TGAAAAGCAAGATTGAGATTTTGGG	58.775	36.000	0.00	0.00	30.27	4.12
1748	1831	3.005898	CGGCGATCGTCCACATTG	58.994	61.111	22.50	2.97	0.00	2.82
1749	1832	1.518352	CGGCGATCGTCCACATTGA	60.518	57.895	22.50	0.00	0.00	2.57
1750	1833	1.752501	CGGCGATCGTCCACATTGAC	61.753	60.000	22.50	2.20	0.00	3.18
1761	1844	3.932710	GTCCACATTGACGAATAGCTTCA	59.067	43.478	0.00	0.00	0.00	3.02
1774	1857	6.071952	ACGAATAGCTTCATTTTGGTCAATGT	60.072	34.615	0.00	0.00	35.86	2.71
1798	1882	1.364171	GTCGCGGCTATCTCCACAT	59.636	57.895	1.90	0.00	0.00	3.21
1804	1888	2.548707	GCGGCTATCTCCACATTGATGA	60.549	50.000	0.00	0.00	0.00	2.92
1805	1889	3.732212	CGGCTATCTCCACATTGATGAA	58.268	45.455	0.00	0.00	0.00	2.57
1812	1896	7.148440	GCTATCTCCACATTGATGAATAGCTTC	60.148	40.741	0.00	0.00	0.00	3.86
1813	1897	5.993055	TCTCCACATTGATGAATAGCTTCA	58.007	37.500	0.00	0.00	45.15	3.02
1848	1932	2.411701	GGTCGCGACGATCATCCA	59.588	61.111	30.99	0.00	36.93	3.41
1865	1949	6.872628	TCATCCACATTGATGAATAGCTTC	57.127	37.500	0.00	0.00	46.08	3.86
1866	1950	6.358991	TCATCCACATTGATGAATAGCTTCA	58.641	36.000	0.00	0.00	46.08	3.02
1879	1963	5.647658	TGAATAGCTTCATTTTCGTCCACAT	59.352	36.000	0.00	0.00	36.46	3.21
1880	1964	6.150976	TGAATAGCTTCATTTTCGTCCACATT	59.849	34.615	0.00	0.00	36.46	2.71
1881	1965	4.164822	AGCTTCATTTTCGTCCACATTG	57.835	40.909	0.00	0.00	0.00	2.82
1921	2019	9.072375	TCACACAATAGTTCATTTCCAACATTA	57.928	29.630	0.00	0.00	0.00	1.90
2112	2210	9.915629	TTTTTAGTTTTCAAGCTCAAACTACAA	57.084	25.926	18.58	16.52	42.50	2.41
2321	2437	5.774690	AGTTGATATGGCCTGAAAGAACAAA	59.225	36.000	3.32	0.00	34.07	2.83
2431	2550	5.124297	TGAAACATTCTGCTCATACACATGG	59.876	40.000	0.00	0.00	32.61	3.66
2432	2551	3.548770	ACATTCTGCTCATACACATGGG	58.451	45.455	0.00	0.00	35.55	4.00
2436	2555	4.462394	CTCATACACATGGGCCGG	57.538	61.111	0.00	0.00	32.61	6.13
2437	2556	1.829456	CTCATACACATGGGCCGGA	59.171	57.895	5.05	0.00	32.61	5.14
2438	2557	0.532862	CTCATACACATGGGCCGGAC	60.533	60.000	5.05	0.00	32.61	4.79
2439	2558	1.525995	CATACACATGGGCCGGACC	60.526	63.158	23.70	23.70	37.93	4.46
2440	2559	3.101796	ATACACATGGGCCGGACCG	62.102	63.158	24.84	11.51	40.62	4.79
2442	2561	4.175337	CACATGGGCCGGACCGAT	62.175	66.667	24.84	14.04	40.62	4.18
2443	2562	3.861797	ACATGGGCCGGACCGATC	61.862	66.667	24.84	6.51	40.62	3.69
2444	2563	3.550431	CATGGGCCGGACCGATCT	61.550	66.667	24.84	2.64	40.62	2.75
2445	2564	2.768344	ATGGGCCGGACCGATCTT	60.768	61.111	24.84	0.00	40.62	2.40
2446	2565	2.375345	ATGGGCCGGACCGATCTTT	61.375	57.895	24.84	0.00	40.62	2.52
2447	2566	1.921869	ATGGGCCGGACCGATCTTTT	61.922	55.000	24.84	0.00	40.62	2.27
2448	2567	2.112815	GGGCCGGACCGATCTTTTG	61.113	63.158	12.91	0.00	40.62	2.44
2449	2568	2.761195	GGCCGGACCGATCTTTTGC	61.761	63.158	17.49	8.05	0.00	3.68
2450	2569	1.745489	GCCGGACCGATCTTTTGCT	60.745	57.895	17.49	0.00	0.00	3.91
2451	2570	0.461339	GCCGGACCGATCTTTTGCTA	60.461	55.000	17.49	0.00	0.00	3.49
2452	2571	2.010043	GCCGGACCGATCTTTTGCTAA	61.010	52.381	17.49	0.00	0.00	3.09
2453	2572	2.352388	CCGGACCGATCTTTTGCTAAA	58.648	47.619	17.49	0.00	0.00	1.85
2454	2573	2.943033	CCGGACCGATCTTTTGCTAAAT	59.057	45.455	17.49	0.00	0.00	1.40
2455	2574	3.242739	CCGGACCGATCTTTTGCTAAATG	60.243	47.826	17.49	0.00	0.00	2.32
2456	2575	3.242739	CGGACCGATCTTTTGCTAAATGG	60.243	47.826	8.64	0.00	0.00	3.16
2457	2576	3.489229	GGACCGATCTTTTGCTAAATGGC	60.489	47.826	0.00	0.00	0.00	4.40
2458	2577	2.097466	ACCGATCTTTTGCTAAATGGCG	59.903	45.455	0.00	0.00	34.52	5.69
2459	2578	2.097466	CCGATCTTTTGCTAAATGGCGT	59.903	45.455	0.00	0.00	34.52	5.68
2460	2579	3.311322	CCGATCTTTTGCTAAATGGCGTA	59.689	43.478	0.00	0.00	34.52	4.42
2461	2580	4.201871	CCGATCTTTTGCTAAATGGCGTAA	60.202	41.667	0.00	0.00	34.52	3.18
2462	2581	5.505654	CCGATCTTTTGCTAAATGGCGTAAT	60.506	40.000	0.00	0.00	34.52	1.89
2463	2582	5.971202	CGATCTTTTGCTAAATGGCGTAATT	59.029	36.000	0.00	0.00	34.52	1.40
2464	2583	6.075415	CGATCTTTTGCTAAATGGCGTAATTG	60.075	38.462	0.00	0.00	34.52	2.32
2465	2584	5.406649	TCTTTTGCTAAATGGCGTAATTGG	58.593	37.500	0.00	0.00	34.52	3.16
2466	2585	5.184096	TCTTTTGCTAAATGGCGTAATTGGA	59.816	36.000	0.00	0.00	34.52	3.53
2467	2586	5.392767	TTTGCTAAATGGCGTAATTGGAA	57.607	34.783	0.00	0.00	34.52	3.53
2468	2587	5.590530	TTGCTAAATGGCGTAATTGGAAT	57.409	34.783	0.00	0.00	34.52	3.01
2469	2588	4.930963	TGCTAAATGGCGTAATTGGAATG	58.069	39.130	0.00	0.00	34.52	2.67
2470	2589	4.642437	TGCTAAATGGCGTAATTGGAATGA	59.358	37.500	0.00	0.00	34.52	2.57
2471	2590	5.126222	TGCTAAATGGCGTAATTGGAATGAA	59.874	36.000	0.00	0.00	34.52	2.57
2472	2591	6.039616	GCTAAATGGCGTAATTGGAATGAAA	58.960	36.000	0.00	0.00	0.00	2.69
2473	2592	6.533367	GCTAAATGGCGTAATTGGAATGAAAA	59.467	34.615	0.00	0.00	0.00	2.29
2474	2593	7.064016	GCTAAATGGCGTAATTGGAATGAAAAA	59.936	33.333	0.00	0.00	0.00	1.94

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	4.090588	CCGTACGCCACACCCCAT	62.091	66.667	10.49	0.00	0.00	4.00
132	133	1.005215	CAGAGTTTCCCCTGGAGCAAT	59.995	52.381	0.00	0.00	31.21	3.56
155	156	1.078528	ATCACCACCCGACCTGAGA	59.921	57.895	0.00	0.00	0.00	3.27
172	173	2.644798	GGTTATGATACCAGAGGGCCAT	59.355	50.000	6.18	0.00	38.12	4.40
199	200	0.613012	GGCTCCAAGATGGCACCTTT	60.613	55.000	0.00	0.00	37.47	3.11
374	376	2.857483	ACAACGATCATCCACAACCAA	58.143	42.857	0.00	0.00	0.00	3.67
394	397	9.841295	AGCTTTCGTCCCACTTTATATATAAAA	57.159	29.630	16.69	1.84	32.39	1.52
462	465	0.595588	TTCGGCGGTCAAGTACGTTA	59.404	50.000	7.21	0.00	0.00	3.18
995	1020	1.089481	CACGAGCGGCAACATACCAT	61.089	55.000	1.45	0.00	0.00	3.55
1020	1048	3.136123	CGGACATGGCAGCAAGGG	61.136	66.667	0.00	0.00	0.00	3.95
1382	1411	4.143543	TCACACCATTGCAAATCTTCTGA	58.856	39.130	1.71	0.00	0.00	3.27
1598	1627	8.976986	AACACTTCATTTAGATCAAAATGCTC	57.023	30.769	0.00	0.00	43.49	4.26
1678	1708	0.465705	ATCAATGTGGACGATCGCCT	59.534	50.000	22.99	4.17	0.00	5.52
1748	1831	5.545658	TGACCAAAATGAAGCTATTCGTC	57.454	39.130	0.00	0.00	38.34	4.20
1749	1832	5.957842	TTGACCAAAATGAAGCTATTCGT	57.042	34.783	0.00	0.00	38.34	3.85
1750	1833	6.252015	CACATTGACCAAAATGAAGCTATTCG	59.748	38.462	4.04	0.00	39.46	3.34
1761	1844	2.556622	GACCGTCCACATTGACCAAAAT	59.443	45.455	0.00	0.00	31.35	1.82
1774	1857	3.896133	GATAGCCGCGACCGTCCA	61.896	66.667	8.23	0.00	0.00	4.02
1788	1871	7.738847	TGAAGCTATTCATCAATGTGGAGATA	58.261	34.615	0.00	0.00	40.54	1.98
1804	1888	6.211184	TCCACATTGACCAAAATGAAGCTATT	59.789	34.615	4.04	0.00	39.46	1.73
1805	1889	5.716228	TCCACATTGACCAAAATGAAGCTAT	59.284	36.000	4.04	0.00	39.46	2.97
1812	1896	2.295909	ACCGTCCACATTGACCAAAATG	59.704	45.455	0.00	0.00	42.21	2.32
1813	1897	2.556622	GACCGTCCACATTGACCAAAAT	59.443	45.455	0.00	0.00	31.35	1.82
1822	1906	2.431942	GTCGCGACCGTCCACATT	60.432	61.111	28.61	0.00	35.54	2.71
1823	1907	4.771356	CGTCGCGACCGTCCACAT	62.771	66.667	31.84	0.00	35.54	3.21
1858	1942	5.647658	TCAATGTGGACGAAAATGAAGCTAT	59.352	36.000	0.00	0.00	0.00	2.97
1865	1949	5.107109	TGTTCTCAATGTGGACGAAAATG	57.893	39.130	0.00	0.00	0.00	2.32
1866	1950	5.067153	TGTTGTTCTCAATGTGGACGAAAAT	59.933	36.000	0.00	0.00	35.92	1.82
1867	1951	4.396478	TGTTGTTCTCAATGTGGACGAAAA	59.604	37.500	0.00	0.00	35.92	2.29
1868	1952	3.942115	TGTTGTTCTCAATGTGGACGAAA	59.058	39.130	0.00	0.00	35.92	3.46
1869	1953	3.536570	TGTTGTTCTCAATGTGGACGAA	58.463	40.909	0.00	0.00	35.92	3.85
1870	1954	3.186702	TGTTGTTCTCAATGTGGACGA	57.813	42.857	0.00	0.00	35.92	4.20
1872	1956	4.044426	GCTTTGTTGTTCTCAATGTGGAC	58.956	43.478	0.00	0.00	35.92	4.02
1874	1958	4.202040	TGAGCTTTGTTGTTCTCAATGTGG	60.202	41.667	0.00	0.00	35.92	4.17
1879	1963	3.755905	TGTGTGAGCTTTGTTGTTCTCAA	59.244	39.130	0.00	0.00	37.33	3.02
1880	1964	3.342719	TGTGTGAGCTTTGTTGTTCTCA	58.657	40.909	0.00	0.00	33.64	3.27
1881	1965	4.355543	TTGTGTGAGCTTTGTTGTTCTC	57.644	40.909	0.00	0.00	0.00	2.87
1921	2019	7.604164	CCAAGTGAACTATTCTGTGAACTATGT	59.396	37.037	0.00	0.00	0.00	2.29
2112	2210	8.807118	TGAAGTATAGAAGAAGTGTTCTGATGT	58.193	33.333	1.16	0.00	40.59	3.06
2431	2550	2.761195	GCAAAAGATCGGTCCGGCC	61.761	63.158	12.29	0.00	0.00	6.13
2432	2551	0.461339	TAGCAAAAGATCGGTCCGGC	60.461	55.000	12.29	4.80	0.00	6.13
2433	2552	2.018542	TTAGCAAAAGATCGGTCCGG	57.981	50.000	12.29	0.00	0.00	5.14
2434	2553	3.242739	CCATTTAGCAAAAGATCGGTCCG	60.243	47.826	4.39	4.39	0.00	4.79
2435	2554	3.489229	GCCATTTAGCAAAAGATCGGTCC	60.489	47.826	0.00	0.00	0.00	4.46
2436	2555	3.695816	GCCATTTAGCAAAAGATCGGTC	58.304	45.455	0.00	0.00	0.00	4.79
2437	2556	2.097466	CGCCATTTAGCAAAAGATCGGT	59.903	45.455	0.00	0.00	0.00	4.69
2438	2557	2.097466	ACGCCATTTAGCAAAAGATCGG	59.903	45.455	0.00	0.00	0.00	4.18
2439	2558	3.405170	ACGCCATTTAGCAAAAGATCG	57.595	42.857	0.00	0.00	0.00	3.69
2440	2559	6.198966	CCAATTACGCCATTTAGCAAAAGATC	59.801	38.462	0.00	0.00	0.00	2.75
2441	2560	6.042143	CCAATTACGCCATTTAGCAAAAGAT	58.958	36.000	0.00	0.00	0.00	2.40
2442	2561	5.184096	TCCAATTACGCCATTTAGCAAAAGA	59.816	36.000	0.00	0.00	0.00	2.52
2443	2562	5.406649	TCCAATTACGCCATTTAGCAAAAG	58.593	37.500	0.00	0.00	0.00	2.27
2444	2563	5.392767	TCCAATTACGCCATTTAGCAAAA	57.607	34.783	0.00	0.00	0.00	2.44
2445	2564	5.392767	TTCCAATTACGCCATTTAGCAAA	57.607	34.783	0.00	0.00	0.00	3.68
2446	2565	5.126222	TCATTCCAATTACGCCATTTAGCAA	59.874	36.000	0.00	0.00	0.00	3.91
2447	2566	4.642437	TCATTCCAATTACGCCATTTAGCA	59.358	37.500	0.00	0.00	0.00	3.49
2448	2567	5.181690	TCATTCCAATTACGCCATTTAGC	57.818	39.130	0.00	0.00	0.00	3.09
2449	2568	8.472683	TTTTTCATTCCAATTACGCCATTTAG	57.527	30.769	0.00	0.00	0.00	1.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.