Multiple sequence alignment - TraesCS6A01G349800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G349800 chr6A 100.000 2160 0 0 1 2160 581964272 581966431 0.000000e+00 3989.0
1 TraesCS6A01G349800 chr6A 100.000 250 0 0 2366 2615 581966637 581966886 1.830000e-126 462.0
2 TraesCS6A01G349800 chr6D 94.069 1804 54 21 1 1765 434603416 434605205 0.000000e+00 2689.0
3 TraesCS6A01G349800 chr6D 90.741 216 16 4 1803 2016 434605449 434605662 4.260000e-73 285.0
4 TraesCS6A01G349800 chr6B 92.287 1854 60 31 41 1837 658118375 658120202 0.000000e+00 2555.0
5 TraesCS6A01G349800 chr6B 94.118 187 10 1 1830 2016 658120605 658120790 1.530000e-72 283.0
6 TraesCS6A01G349800 chr6B 100.000 32 0 0 1 32 658118351 658118382 2.810000e-05 60.2
7 TraesCS6A01G349800 chr5D 81.497 708 100 18 999 1690 125778288 125777596 1.060000e-153 553.0
8 TraesCS6A01G349800 chr5D 79.870 154 13 3 610 745 125781042 125780889 2.140000e-16 97.1
9 TraesCS6A01G349800 chr5B 80.833 720 95 20 999 1690 138557598 138556894 2.310000e-145 525.0
10 TraesCS6A01G349800 chr5A 81.020 706 87 21 999 1672 139893966 139893276 3.860000e-143 518.0
11 TraesCS6A01G349800 chr5A 77.821 257 37 5 2371 2607 535383475 535383731 9.760000e-30 141.0
12 TraesCS6A01G349800 chr7A 81.774 620 89 15 999 1609 634930993 634930389 5.030000e-137 497.0
13 TraesCS6A01G349800 chr7D 81.051 628 96 16 999 1616 549318819 549318205 1.820000e-131 479.0
14 TraesCS6A01G349800 chr7D 80.854 632 94 19 999 1620 549368929 549368315 3.050000e-129 472.0
15 TraesCS6A01G349800 chr7D 79.042 167 23 11 250 412 549370024 549369866 1.280000e-18 104.0
16 TraesCS6A01G349800 chr2D 86.585 82 10 1 2013 2093 556055727 556055808 3.580000e-14 89.8
17 TraesCS6A01G349800 chr2D 86.885 61 3 4 2013 2069 623118543 623118602 2.170000e-06 63.9
18 TraesCS6A01G349800 chr2A 86.667 60 3 3 2013 2068 754429904 754429962 7.810000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G349800 chr6A 581964272 581966886 2614 False 2225.500000 3989 100.000000 1 2615 2 chr6A.!!$F1 2614
1 TraesCS6A01G349800 chr6D 434603416 434605662 2246 False 1487.000000 2689 92.405000 1 2016 2 chr6D.!!$F1 2015
2 TraesCS6A01G349800 chr6B 658118351 658120790 2439 False 966.066667 2555 95.468333 1 2016 3 chr6B.!!$F1 2015
3 TraesCS6A01G349800 chr5D 125777596 125781042 3446 True 325.050000 553 80.683500 610 1690 2 chr5D.!!$R1 1080
4 TraesCS6A01G349800 chr5B 138556894 138557598 704 True 525.000000 525 80.833000 999 1690 1 chr5B.!!$R1 691
5 TraesCS6A01G349800 chr5A 139893276 139893966 690 True 518.000000 518 81.020000 999 1672 1 chr5A.!!$R1 673
6 TraesCS6A01G349800 chr7A 634930389 634930993 604 True 497.000000 497 81.774000 999 1609 1 chr7A.!!$R1 610
7 TraesCS6A01G349800 chr7D 549318205 549318819 614 True 479.000000 479 81.051000 999 1616 1 chr7D.!!$R1 617
8 TraesCS6A01G349800 chr7D 549368315 549370024 1709 True 288.000000 472 79.948000 250 1620 2 chr7D.!!$R2 1370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
583 625 3.629855 GCTTCCTTAATCTCCTTTGCTCC 59.37 47.826 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2473 5784 0.03582 GGTTTCACGCCATAGTGGGA 60.036 55.0 0.0 0.0 42.1 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 4.243270 ACTCGTTTGGTGCTAGTTATGAC 58.757 43.478 0.00 0.00 0.00 3.06
139 141 4.116961 GTGCTAGTTATGACGTTGCCATA 58.883 43.478 0.00 0.00 0.00 2.74
383 418 4.400251 TCTTGTTCCTCATGGCAATTCATC 59.600 41.667 0.00 0.00 0.00 2.92
412 447 6.698008 TTCACACACAAACATGAAGAATCT 57.302 33.333 0.00 0.00 0.00 2.40
573 615 7.141758 TGATGATTACCAGCTTCCTTAATCT 57.858 36.000 11.71 2.55 33.74 2.40
583 625 3.629855 GCTTCCTTAATCTCCTTTGCTCC 59.370 47.826 0.00 0.00 0.00 4.70
1438 4126 2.357517 CAGCCGAAACCGCAGAGT 60.358 61.111 0.00 0.00 0.00 3.24
1725 4419 8.479313 TGCACTATTGTTCTTGTACTTATGAG 57.521 34.615 0.00 0.00 0.00 2.90
1732 4426 9.950496 ATTGTTCTTGTACTTATGAGAGACATT 57.050 29.630 0.00 0.00 40.07 2.71
1823 4724 3.725010 CGCGTTTGCTAAATCTCAGGTTC 60.725 47.826 0.00 0.00 39.65 3.62
1842 5153 5.046520 AGGTTCCTGAGAAAGTTATAGCGTT 60.047 40.000 0.00 0.00 32.58 4.84
1857 5168 3.813529 AGCGTTAGTCATTTGTGCTTC 57.186 42.857 0.00 0.00 0.00 3.86
1883 5194 2.436824 GCCAAAGGCGAGGAGGAC 60.437 66.667 0.00 0.00 39.62 3.85
1901 5212 0.388649 ACGTGAGGAGCGACATGAAC 60.389 55.000 0.00 0.00 0.00 3.18
2016 5327 0.325860 ATGCAGGGGTTACCGGAGTA 60.326 55.000 9.46 0.00 46.96 2.59
2017 5328 0.544833 TGCAGGGGTTACCGGAGTAA 60.545 55.000 9.46 0.00 46.96 2.24
2018 5329 0.614812 GCAGGGGTTACCGGAGTAAA 59.385 55.000 9.46 0.00 46.96 2.01
2019 5330 1.676916 GCAGGGGTTACCGGAGTAAAC 60.677 57.143 9.46 6.83 44.15 2.01
2020 5331 1.624813 CAGGGGTTACCGGAGTAAACA 59.375 52.381 9.46 0.00 46.28 2.83
2021 5332 2.237893 CAGGGGTTACCGGAGTAAACAT 59.762 50.000 9.46 0.00 46.28 2.71
2022 5333 2.237893 AGGGGTTACCGGAGTAAACATG 59.762 50.000 9.46 0.00 46.28 3.21
2023 5334 2.011947 GGGTTACCGGAGTAAACATGC 58.988 52.381 9.46 0.00 46.28 4.06
2024 5335 2.616001 GGGTTACCGGAGTAAACATGCA 60.616 50.000 9.46 0.00 46.28 3.96
2025 5336 3.275999 GGTTACCGGAGTAAACATGCAT 58.724 45.455 9.46 0.00 44.27 3.96
2026 5337 4.444536 GGTTACCGGAGTAAACATGCATA 58.555 43.478 9.46 0.00 44.27 3.14
2027 5338 4.271776 GGTTACCGGAGTAAACATGCATAC 59.728 45.833 9.46 0.00 44.27 2.39
2028 5339 3.906720 ACCGGAGTAAACATGCATACT 57.093 42.857 9.46 9.99 35.13 2.12
2029 5340 6.275335 GTTACCGGAGTAAACATGCATACTA 58.725 40.000 9.46 0.00 40.12 1.82
2030 5341 5.347620 ACCGGAGTAAACATGCATACTAA 57.652 39.130 9.46 0.00 32.66 2.24
2031 5342 5.736813 ACCGGAGTAAACATGCATACTAAA 58.263 37.500 9.46 0.00 32.66 1.85
2032 5343 6.174760 ACCGGAGTAAACATGCATACTAAAA 58.825 36.000 9.46 0.00 32.66 1.52
2033 5344 6.826741 ACCGGAGTAAACATGCATACTAAAAT 59.173 34.615 9.46 0.00 32.66 1.82
2034 5345 7.132213 CCGGAGTAAACATGCATACTAAAATG 58.868 38.462 0.00 0.00 32.66 2.32
2035 5346 7.201696 CCGGAGTAAACATGCATACTAAAATGT 60.202 37.037 0.00 0.00 32.66 2.71
2036 5347 7.639850 CGGAGTAAACATGCATACTAAAATGTG 59.360 37.037 0.00 0.00 33.65 3.21
2037 5348 8.458843 GGAGTAAACATGCATACTAAAATGTGT 58.541 33.333 0.00 0.00 33.65 3.72
2038 5349 9.490663 GAGTAAACATGCATACTAAAATGTGTC 57.509 33.333 0.00 0.00 33.65 3.67
2039 5350 9.231297 AGTAAACATGCATACTAAAATGTGTCT 57.769 29.630 0.00 0.00 33.65 3.41
2042 5353 9.448438 AAACATGCATACTAAAATGTGTCTAGA 57.552 29.630 0.00 0.00 33.65 2.43
2043 5354 9.618890 AACATGCATACTAAAATGTGTCTAGAT 57.381 29.630 0.00 0.00 33.65 1.98
2073 5384 9.691362 ACAATTCAATAAAACGCTAAAATGTCT 57.309 25.926 0.00 0.00 0.00 3.41
2092 5403 9.774413 AAATGTCTTATATTAGTAAACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
2093 5404 7.294017 TGTCTTATATTAGTAAACGGAGGGG 57.706 40.000 0.00 0.00 0.00 4.79
2094 5405 6.162079 GTCTTATATTAGTAAACGGAGGGGC 58.838 44.000 0.00 0.00 0.00 5.80
2095 5406 6.014755 GTCTTATATTAGTAAACGGAGGGGCT 60.015 42.308 0.00 0.00 0.00 5.19
2096 5407 7.177392 GTCTTATATTAGTAAACGGAGGGGCTA 59.823 40.741 0.00 0.00 0.00 3.93
2097 5408 7.897565 TCTTATATTAGTAAACGGAGGGGCTAT 59.102 37.037 0.00 0.00 0.00 2.97
2098 5409 4.618920 ATTAGTAAACGGAGGGGCTATG 57.381 45.455 0.00 0.00 0.00 2.23
2099 5410 1.875488 AGTAAACGGAGGGGCTATGT 58.125 50.000 0.00 0.00 0.00 2.29
2100 5411 2.193993 AGTAAACGGAGGGGCTATGTT 58.806 47.619 0.00 0.00 0.00 2.71
2101 5412 3.377573 AGTAAACGGAGGGGCTATGTTA 58.622 45.455 0.00 0.00 0.00 2.41
2102 5413 2.704464 AAACGGAGGGGCTATGTTAC 57.296 50.000 0.00 0.00 0.00 2.50
2103 5414 1.575419 AACGGAGGGGCTATGTTACA 58.425 50.000 0.00 0.00 0.00 2.41
2104 5415 1.120530 ACGGAGGGGCTATGTTACAG 58.879 55.000 0.00 0.00 0.00 2.74
2105 5416 0.249911 CGGAGGGGCTATGTTACAGC 60.250 60.000 0.00 0.00 38.35 4.40
2106 5417 0.249911 GGAGGGGCTATGTTACAGCG 60.250 60.000 0.00 0.00 40.05 5.18
2107 5418 0.464452 GAGGGGCTATGTTACAGCGT 59.536 55.000 0.00 0.00 40.05 5.07
2108 5419 0.178068 AGGGGCTATGTTACAGCGTG 59.822 55.000 0.00 0.00 40.05 5.34
2109 5420 0.814010 GGGGCTATGTTACAGCGTGG 60.814 60.000 0.00 0.00 40.05 4.94
2110 5421 1.436983 GGGCTATGTTACAGCGTGGC 61.437 60.000 0.00 0.00 40.05 5.01
2111 5422 0.742990 GGCTATGTTACAGCGTGGCA 60.743 55.000 0.00 0.00 40.05 4.92
2112 5423 1.083489 GCTATGTTACAGCGTGGCAA 58.917 50.000 0.00 0.00 32.99 4.52
2113 5424 1.670811 GCTATGTTACAGCGTGGCAAT 59.329 47.619 0.00 0.00 32.99 3.56
2114 5425 2.539547 GCTATGTTACAGCGTGGCAATG 60.540 50.000 0.00 0.00 32.99 2.82
2115 5426 1.819928 ATGTTACAGCGTGGCAATGA 58.180 45.000 0.00 0.00 0.00 2.57
2116 5427 0.871722 TGTTACAGCGTGGCAATGAC 59.128 50.000 0.00 0.00 0.00 3.06
2117 5428 1.156736 GTTACAGCGTGGCAATGACT 58.843 50.000 0.00 0.00 0.00 3.41
2118 5429 1.535462 GTTACAGCGTGGCAATGACTT 59.465 47.619 0.00 0.00 0.00 3.01
2119 5430 1.155889 TACAGCGTGGCAATGACTTG 58.844 50.000 0.00 0.00 35.36 3.16
2120 5431 1.210931 CAGCGTGGCAATGACTTGG 59.789 57.895 0.00 0.00 32.72 3.61
2121 5432 1.073025 AGCGTGGCAATGACTTGGA 59.927 52.632 0.00 0.00 32.72 3.53
2122 5433 0.957395 AGCGTGGCAATGACTTGGAG 60.957 55.000 0.00 0.00 32.72 3.86
2123 5434 0.955428 GCGTGGCAATGACTTGGAGA 60.955 55.000 0.00 0.00 32.72 3.71
2124 5435 1.742761 CGTGGCAATGACTTGGAGAT 58.257 50.000 0.00 0.00 32.72 2.75
2125 5436 2.905075 CGTGGCAATGACTTGGAGATA 58.095 47.619 0.00 0.00 32.72 1.98
2126 5437 3.470709 CGTGGCAATGACTTGGAGATAT 58.529 45.455 0.00 0.00 32.72 1.63
2127 5438 3.496130 CGTGGCAATGACTTGGAGATATC 59.504 47.826 0.00 0.00 32.72 1.63
2128 5439 3.496130 GTGGCAATGACTTGGAGATATCG 59.504 47.826 0.00 0.00 32.72 2.92
2129 5440 3.387699 TGGCAATGACTTGGAGATATCGA 59.612 43.478 0.00 0.00 32.72 3.59
2130 5441 4.141733 TGGCAATGACTTGGAGATATCGAA 60.142 41.667 0.00 0.00 32.72 3.71
2131 5442 4.999950 GGCAATGACTTGGAGATATCGAAT 59.000 41.667 0.00 0.00 32.72 3.34
2132 5443 5.471456 GGCAATGACTTGGAGATATCGAATT 59.529 40.000 0.00 0.00 32.72 2.17
2133 5444 6.016777 GGCAATGACTTGGAGATATCGAATTT 60.017 38.462 0.00 0.00 32.72 1.82
2134 5445 6.854892 GCAATGACTTGGAGATATCGAATTTG 59.145 38.462 0.00 0.00 32.72 2.32
2135 5446 5.991328 TGACTTGGAGATATCGAATTTGC 57.009 39.130 0.00 0.00 0.00 3.68
2136 5447 4.816385 TGACTTGGAGATATCGAATTTGCC 59.184 41.667 0.00 0.00 0.00 4.52
2137 5448 5.041191 ACTTGGAGATATCGAATTTGCCT 57.959 39.130 0.00 0.00 0.00 4.75
2138 5449 5.440610 ACTTGGAGATATCGAATTTGCCTT 58.559 37.500 0.00 0.00 0.00 4.35
2139 5450 5.297776 ACTTGGAGATATCGAATTTGCCTTG 59.702 40.000 0.00 0.00 0.00 3.61
2140 5451 4.780815 TGGAGATATCGAATTTGCCTTGT 58.219 39.130 0.00 0.00 0.00 3.16
2141 5452 5.192927 TGGAGATATCGAATTTGCCTTGTT 58.807 37.500 0.00 0.00 0.00 2.83
2142 5453 5.066375 TGGAGATATCGAATTTGCCTTGTTG 59.934 40.000 0.00 0.00 0.00 3.33
2143 5454 5.296780 GGAGATATCGAATTTGCCTTGTTGA 59.703 40.000 0.00 0.00 0.00 3.18
2144 5455 6.124088 AGATATCGAATTTGCCTTGTTGAC 57.876 37.500 0.00 0.00 0.00 3.18
2145 5456 5.882557 AGATATCGAATTTGCCTTGTTGACT 59.117 36.000 0.00 0.00 0.00 3.41
2146 5457 3.896648 TCGAATTTGCCTTGTTGACTC 57.103 42.857 0.00 0.00 0.00 3.36
2147 5458 3.476552 TCGAATTTGCCTTGTTGACTCT 58.523 40.909 0.00 0.00 0.00 3.24
2148 5459 3.250762 TCGAATTTGCCTTGTTGACTCTG 59.749 43.478 0.00 0.00 0.00 3.35
2149 5460 3.610114 CGAATTTGCCTTGTTGACTCTGG 60.610 47.826 0.00 0.00 0.00 3.86
2150 5461 1.691196 TTTGCCTTGTTGACTCTGGG 58.309 50.000 0.00 0.00 0.00 4.45
2151 5462 0.178992 TTGCCTTGTTGACTCTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
2152 5463 1.352622 TGCCTTGTTGACTCTGGGGT 61.353 55.000 0.00 0.00 0.00 4.95
2153 5464 0.890996 GCCTTGTTGACTCTGGGGTG 60.891 60.000 0.00 0.00 0.00 4.61
2154 5465 0.250901 CCTTGTTGACTCTGGGGTGG 60.251 60.000 0.00 0.00 0.00 4.61
2155 5466 0.250901 CTTGTTGACTCTGGGGTGGG 60.251 60.000 0.00 0.00 0.00 4.61
2156 5467 1.715019 TTGTTGACTCTGGGGTGGGG 61.715 60.000 0.00 0.00 0.00 4.96
2157 5468 2.531685 TTGACTCTGGGGTGGGGG 60.532 66.667 0.00 0.00 0.00 5.40
2390 5701 2.538760 AGGGACTCCTCCTTGGCA 59.461 61.111 0.00 0.00 39.80 4.92
2391 5702 1.151810 AGGGACTCCTCCTTGGCAA 60.152 57.895 0.00 0.00 39.80 4.52
2392 5703 0.551131 AGGGACTCCTCCTTGGCAAT 60.551 55.000 0.00 0.00 39.80 3.56
2393 5704 0.106967 GGGACTCCTCCTTGGCAATC 60.107 60.000 0.00 0.00 36.68 2.67
2394 5705 0.106967 GGACTCCTCCTTGGCAATCC 60.107 60.000 0.00 0.00 33.07 3.01
2395 5706 0.620556 GACTCCTCCTTGGCAATCCA 59.379 55.000 0.00 0.00 41.55 3.41
2396 5707 1.213926 GACTCCTCCTTGGCAATCCAT 59.786 52.381 0.00 0.00 43.05 3.41
2397 5708 1.064166 ACTCCTCCTTGGCAATCCATG 60.064 52.381 0.00 0.00 43.05 3.66
2398 5709 1.213678 CTCCTCCTTGGCAATCCATGA 59.786 52.381 0.00 0.00 43.05 3.07
2399 5710 1.213678 TCCTCCTTGGCAATCCATGAG 59.786 52.381 0.00 2.48 43.05 2.90
2400 5711 1.213678 CCTCCTTGGCAATCCATGAGA 59.786 52.381 0.00 0.00 43.05 3.27
2401 5712 2.357465 CCTCCTTGGCAATCCATGAGAA 60.357 50.000 0.00 0.00 43.05 2.87
2402 5713 3.359033 CTCCTTGGCAATCCATGAGAAA 58.641 45.455 0.00 0.00 43.05 2.52
2403 5714 3.359033 TCCTTGGCAATCCATGAGAAAG 58.641 45.455 0.00 0.00 43.05 2.62
2404 5715 3.094572 CCTTGGCAATCCATGAGAAAGT 58.905 45.455 0.00 0.00 43.05 2.66
2405 5716 4.018506 TCCTTGGCAATCCATGAGAAAGTA 60.019 41.667 0.00 0.00 43.05 2.24
2406 5717 4.891756 CCTTGGCAATCCATGAGAAAGTAT 59.108 41.667 0.00 0.00 43.05 2.12
2407 5718 5.221185 CCTTGGCAATCCATGAGAAAGTATG 60.221 44.000 0.00 0.00 43.05 2.39
2408 5719 4.209538 TGGCAATCCATGAGAAAGTATGG 58.790 43.478 0.00 0.00 44.15 2.74
2409 5720 4.210331 GGCAATCCATGAGAAAGTATGGT 58.790 43.478 0.00 0.00 43.43 3.55
2410 5721 4.037208 GGCAATCCATGAGAAAGTATGGTG 59.963 45.833 0.00 0.00 43.43 4.17
2411 5722 4.641989 GCAATCCATGAGAAAGTATGGTGT 59.358 41.667 0.00 0.00 43.43 4.16
2412 5723 5.449588 GCAATCCATGAGAAAGTATGGTGTG 60.450 44.000 0.00 0.00 43.43 3.82
2413 5724 5.698741 ATCCATGAGAAAGTATGGTGTGA 57.301 39.130 0.00 0.00 43.43 3.58
2414 5725 5.497464 TCCATGAGAAAGTATGGTGTGAA 57.503 39.130 0.00 0.00 43.43 3.18
2415 5726 5.491070 TCCATGAGAAAGTATGGTGTGAAG 58.509 41.667 0.00 0.00 43.43 3.02
2416 5727 4.637534 CCATGAGAAAGTATGGTGTGAAGG 59.362 45.833 0.00 0.00 39.18 3.46
2417 5728 5.491070 CATGAGAAAGTATGGTGTGAAGGA 58.509 41.667 0.00 0.00 0.00 3.36
2418 5729 5.152623 TGAGAAAGTATGGTGTGAAGGAG 57.847 43.478 0.00 0.00 0.00 3.69
2419 5730 4.838423 TGAGAAAGTATGGTGTGAAGGAGA 59.162 41.667 0.00 0.00 0.00 3.71
2420 5731 5.047021 TGAGAAAGTATGGTGTGAAGGAGAG 60.047 44.000 0.00 0.00 0.00 3.20
2421 5732 5.087323 AGAAAGTATGGTGTGAAGGAGAGA 58.913 41.667 0.00 0.00 0.00 3.10
2422 5733 5.544176 AGAAAGTATGGTGTGAAGGAGAGAA 59.456 40.000 0.00 0.00 0.00 2.87
2423 5734 5.413309 AAGTATGGTGTGAAGGAGAGAAG 57.587 43.478 0.00 0.00 0.00 2.85
2424 5735 3.772025 AGTATGGTGTGAAGGAGAGAAGG 59.228 47.826 0.00 0.00 0.00 3.46
2425 5736 2.103153 TGGTGTGAAGGAGAGAAGGT 57.897 50.000 0.00 0.00 0.00 3.50
2426 5737 1.694150 TGGTGTGAAGGAGAGAAGGTG 59.306 52.381 0.00 0.00 0.00 4.00
2427 5738 1.971357 GGTGTGAAGGAGAGAAGGTGA 59.029 52.381 0.00 0.00 0.00 4.02
2428 5739 2.028567 GGTGTGAAGGAGAGAAGGTGAG 60.029 54.545 0.00 0.00 0.00 3.51
2429 5740 2.028567 GTGTGAAGGAGAGAAGGTGAGG 60.029 54.545 0.00 0.00 0.00 3.86
2430 5741 2.252714 GTGAAGGAGAGAAGGTGAGGT 58.747 52.381 0.00 0.00 0.00 3.85
2431 5742 2.028567 GTGAAGGAGAGAAGGTGAGGTG 60.029 54.545 0.00 0.00 0.00 4.00
2432 5743 1.552792 GAAGGAGAGAAGGTGAGGTGG 59.447 57.143 0.00 0.00 0.00 4.61
2433 5744 0.907230 AGGAGAGAAGGTGAGGTGGC 60.907 60.000 0.00 0.00 0.00 5.01
2434 5745 1.194781 GGAGAGAAGGTGAGGTGGCA 61.195 60.000 0.00 0.00 0.00 4.92
2435 5746 0.908198 GAGAGAAGGTGAGGTGGCAT 59.092 55.000 0.00 0.00 0.00 4.40
2436 5747 0.908198 AGAGAAGGTGAGGTGGCATC 59.092 55.000 0.00 0.00 0.00 3.91
2437 5748 0.615331 GAGAAGGTGAGGTGGCATCA 59.385 55.000 0.00 0.00 0.00 3.07
2438 5749 1.211457 GAGAAGGTGAGGTGGCATCAT 59.789 52.381 0.00 0.00 0.00 2.45
2439 5750 1.637553 AGAAGGTGAGGTGGCATCATT 59.362 47.619 0.00 0.00 0.00 2.57
2440 5751 2.042162 AGAAGGTGAGGTGGCATCATTT 59.958 45.455 0.00 0.00 0.00 2.32
2441 5752 1.843368 AGGTGAGGTGGCATCATTTG 58.157 50.000 0.00 0.00 0.00 2.32
2442 5753 0.819582 GGTGAGGTGGCATCATTTGG 59.180 55.000 0.00 0.00 0.00 3.28
2443 5754 1.549203 GTGAGGTGGCATCATTTGGT 58.451 50.000 0.00 0.00 0.00 3.67
2444 5755 1.895131 GTGAGGTGGCATCATTTGGTT 59.105 47.619 0.00 0.00 0.00 3.67
2445 5756 2.299867 GTGAGGTGGCATCATTTGGTTT 59.700 45.455 0.00 0.00 0.00 3.27
2446 5757 2.971330 TGAGGTGGCATCATTTGGTTTT 59.029 40.909 0.00 0.00 0.00 2.43
2447 5758 4.021544 GTGAGGTGGCATCATTTGGTTTTA 60.022 41.667 0.00 0.00 0.00 1.52
2448 5759 4.590647 TGAGGTGGCATCATTTGGTTTTAA 59.409 37.500 0.00 0.00 0.00 1.52
2449 5760 5.070981 TGAGGTGGCATCATTTGGTTTTAAA 59.929 36.000 0.00 0.00 0.00 1.52
2450 5761 5.550290 AGGTGGCATCATTTGGTTTTAAAG 58.450 37.500 0.00 0.00 0.00 1.85
2451 5762 5.306678 AGGTGGCATCATTTGGTTTTAAAGA 59.693 36.000 0.00 0.00 0.00 2.52
2452 5763 5.994668 GGTGGCATCATTTGGTTTTAAAGAA 59.005 36.000 0.00 0.00 0.00 2.52
2453 5764 6.147656 GGTGGCATCATTTGGTTTTAAAGAAG 59.852 38.462 0.00 0.00 0.00 2.85
2454 5765 6.928492 GTGGCATCATTTGGTTTTAAAGAAGA 59.072 34.615 0.00 0.00 0.00 2.87
2455 5766 7.116805 GTGGCATCATTTGGTTTTAAAGAAGAG 59.883 37.037 0.00 0.00 0.00 2.85
2456 5767 6.591448 GGCATCATTTGGTTTTAAAGAAGAGG 59.409 38.462 0.00 0.00 0.00 3.69
2457 5768 7.378181 GCATCATTTGGTTTTAAAGAAGAGGA 58.622 34.615 0.00 0.00 0.00 3.71
2458 5769 7.329471 GCATCATTTGGTTTTAAAGAAGAGGAC 59.671 37.037 0.00 0.00 0.00 3.85
2459 5770 8.579863 CATCATTTGGTTTTAAAGAAGAGGACT 58.420 33.333 0.00 0.00 0.00 3.85
2460 5771 8.166422 TCATTTGGTTTTAAAGAAGAGGACTC 57.834 34.615 0.00 0.00 0.00 3.36
2461 5772 7.998964 TCATTTGGTTTTAAAGAAGAGGACTCT 59.001 33.333 0.00 0.00 42.75 3.24
2462 5773 9.284968 CATTTGGTTTTAAAGAAGAGGACTCTA 57.715 33.333 1.69 0.00 39.39 2.43
2463 5774 8.904099 TTTGGTTTTAAAGAAGAGGACTCTAG 57.096 34.615 1.69 0.00 39.39 2.43
2464 5775 6.465084 TGGTTTTAAAGAAGAGGACTCTAGC 58.535 40.000 1.69 0.00 39.39 3.42
2465 5776 6.042781 TGGTTTTAAAGAAGAGGACTCTAGCA 59.957 38.462 1.69 0.00 39.39 3.49
2466 5777 6.935208 GGTTTTAAAGAAGAGGACTCTAGCAA 59.065 38.462 1.69 0.00 39.39 3.91
2467 5778 7.118535 GGTTTTAAAGAAGAGGACTCTAGCAAG 59.881 40.741 1.69 0.00 39.39 4.01
2468 5779 7.540474 TTTAAAGAAGAGGACTCTAGCAAGA 57.460 36.000 1.69 0.00 39.39 3.02
2469 5780 7.540474 TTAAAGAAGAGGACTCTAGCAAGAA 57.460 36.000 1.69 0.00 39.39 2.52
2470 5781 6.426646 AAAGAAGAGGACTCTAGCAAGAAA 57.573 37.500 1.69 0.00 39.39 2.52
2471 5782 6.619329 AAGAAGAGGACTCTAGCAAGAAAT 57.381 37.500 1.69 0.00 39.39 2.17
2472 5783 6.619329 AGAAGAGGACTCTAGCAAGAAATT 57.381 37.500 1.69 0.00 39.39 1.82
2473 5784 7.014988 AGAAGAGGACTCTAGCAAGAAATTT 57.985 36.000 1.69 0.00 39.39 1.82
2474 5785 7.102993 AGAAGAGGACTCTAGCAAGAAATTTC 58.897 38.462 10.33 10.33 39.39 2.17
2475 5786 5.739959 AGAGGACTCTAGCAAGAAATTTCC 58.260 41.667 14.61 0.00 38.35 3.13
2476 5787 4.849518 AGGACTCTAGCAAGAAATTTCCC 58.150 43.478 14.61 4.83 0.00 3.97
2477 5788 4.289672 AGGACTCTAGCAAGAAATTTCCCA 59.710 41.667 14.61 0.00 0.00 4.37
2478 5789 4.396478 GGACTCTAGCAAGAAATTTCCCAC 59.604 45.833 14.61 4.38 0.00 4.61
2479 5790 5.248380 ACTCTAGCAAGAAATTTCCCACT 57.752 39.130 14.61 11.26 0.00 4.00
2480 5791 6.374417 ACTCTAGCAAGAAATTTCCCACTA 57.626 37.500 14.61 11.74 0.00 2.74
2481 5792 6.963322 ACTCTAGCAAGAAATTTCCCACTAT 58.037 36.000 14.61 0.00 0.00 2.12
2482 5793 6.825721 ACTCTAGCAAGAAATTTCCCACTATG 59.174 38.462 14.61 10.73 0.00 2.23
2483 5794 6.122277 TCTAGCAAGAAATTTCCCACTATGG 58.878 40.000 14.61 3.97 37.25 2.74
2484 5795 3.448660 AGCAAGAAATTTCCCACTATGGC 59.551 43.478 14.61 4.50 35.79 4.40
2485 5796 3.734902 GCAAGAAATTTCCCACTATGGCG 60.735 47.826 14.61 0.00 35.79 5.69
2486 5797 3.366052 AGAAATTTCCCACTATGGCGT 57.634 42.857 14.61 0.00 35.79 5.68
2487 5798 3.016736 AGAAATTTCCCACTATGGCGTG 58.983 45.455 14.61 0.00 35.79 5.34
2488 5799 2.799126 AATTTCCCACTATGGCGTGA 57.201 45.000 0.00 0.00 35.79 4.35
2489 5800 2.799126 ATTTCCCACTATGGCGTGAA 57.201 45.000 0.00 0.00 35.79 3.18
2490 5801 2.570415 TTTCCCACTATGGCGTGAAA 57.430 45.000 0.00 0.00 35.79 2.69
2491 5802 1.816074 TTCCCACTATGGCGTGAAAC 58.184 50.000 0.00 0.00 35.79 2.78
2492 5803 0.035820 TCCCACTATGGCGTGAAACC 60.036 55.000 0.00 0.00 35.79 3.27
2493 5804 1.366111 CCCACTATGGCGTGAAACCG 61.366 60.000 0.00 0.00 35.79 4.44
2494 5805 0.390603 CCACTATGGCGTGAAACCGA 60.391 55.000 0.00 0.00 37.06 4.69
2495 5806 0.999406 CACTATGGCGTGAAACCGAG 59.001 55.000 0.00 0.00 37.06 4.63
2496 5807 0.739813 ACTATGGCGTGAAACCGAGC 60.740 55.000 0.00 0.00 0.00 5.03
2497 5808 1.752501 CTATGGCGTGAAACCGAGCG 61.753 60.000 0.00 0.00 0.00 5.03
2498 5809 2.215465 TATGGCGTGAAACCGAGCGA 62.215 55.000 0.00 0.00 0.00 4.93
2499 5810 3.479269 GGCGTGAAACCGAGCGAG 61.479 66.667 0.00 0.00 0.00 5.03
2500 5811 2.430244 GCGTGAAACCGAGCGAGA 60.430 61.111 0.00 0.00 0.00 4.04
2501 5812 2.019951 GCGTGAAACCGAGCGAGAA 61.020 57.895 0.00 0.00 0.00 2.87
2502 5813 1.945776 GCGTGAAACCGAGCGAGAAG 61.946 60.000 0.00 0.00 0.00 2.85
2512 5823 3.760035 GCGAGAAGCGGAGGGTCA 61.760 66.667 0.00 0.00 41.29 4.02
2513 5824 2.182030 CGAGAAGCGGAGGGTCAC 59.818 66.667 0.00 0.00 36.03 3.67
2514 5825 2.636412 CGAGAAGCGGAGGGTCACA 61.636 63.158 0.00 0.00 36.03 3.58
2515 5826 1.901085 GAGAAGCGGAGGGTCACAT 59.099 57.895 0.00 0.00 0.00 3.21
2516 5827 1.112113 GAGAAGCGGAGGGTCACATA 58.888 55.000 0.00 0.00 0.00 2.29
2517 5828 1.067821 GAGAAGCGGAGGGTCACATAG 59.932 57.143 0.00 0.00 0.00 2.23
2518 5829 0.105039 GAAGCGGAGGGTCACATAGG 59.895 60.000 0.00 0.00 0.00 2.57
2519 5830 0.325296 AAGCGGAGGGTCACATAGGA 60.325 55.000 0.00 0.00 0.00 2.94
2520 5831 0.325296 AGCGGAGGGTCACATAGGAA 60.325 55.000 0.00 0.00 0.00 3.36
2521 5832 0.539986 GCGGAGGGTCACATAGGAAA 59.460 55.000 0.00 0.00 0.00 3.13
2522 5833 1.141053 GCGGAGGGTCACATAGGAAAT 59.859 52.381 0.00 0.00 0.00 2.17
2523 5834 2.838736 CGGAGGGTCACATAGGAAATG 58.161 52.381 0.00 0.00 0.00 2.32
2524 5835 2.485479 CGGAGGGTCACATAGGAAATGG 60.485 54.545 0.00 0.00 0.00 3.16
2525 5836 2.158608 GGAGGGTCACATAGGAAATGGG 60.159 54.545 0.00 0.00 0.00 4.00
2526 5837 2.777692 GAGGGTCACATAGGAAATGGGA 59.222 50.000 0.00 0.00 0.00 4.37
2527 5838 3.197983 AGGGTCACATAGGAAATGGGAA 58.802 45.455 0.00 0.00 32.64 3.97
2528 5839 3.203040 AGGGTCACATAGGAAATGGGAAG 59.797 47.826 0.00 0.00 32.64 3.46
2529 5840 3.555966 GGTCACATAGGAAATGGGAAGG 58.444 50.000 0.00 0.00 32.64 3.46
2530 5841 3.555966 GTCACATAGGAAATGGGAAGGG 58.444 50.000 0.00 0.00 32.64 3.95
2531 5842 3.202151 GTCACATAGGAAATGGGAAGGGA 59.798 47.826 0.00 0.00 32.64 4.20
2532 5843 4.054369 TCACATAGGAAATGGGAAGGGAT 58.946 43.478 0.00 0.00 0.00 3.85
2533 5844 4.482025 TCACATAGGAAATGGGAAGGGATT 59.518 41.667 0.00 0.00 0.00 3.01
2534 5845 5.043432 TCACATAGGAAATGGGAAGGGATTT 60.043 40.000 0.00 0.00 0.00 2.17
2535 5846 5.662657 CACATAGGAAATGGGAAGGGATTTT 59.337 40.000 0.00 0.00 0.00 1.82
2536 5847 6.156775 CACATAGGAAATGGGAAGGGATTTTT 59.843 38.462 0.00 0.00 0.00 1.94
2537 5848 6.156775 ACATAGGAAATGGGAAGGGATTTTTG 59.843 38.462 0.00 0.00 0.00 2.44
2538 5849 4.502415 AGGAAATGGGAAGGGATTTTTGT 58.498 39.130 0.00 0.00 0.00 2.83
2539 5850 4.286808 AGGAAATGGGAAGGGATTTTTGTG 59.713 41.667 0.00 0.00 0.00 3.33
2540 5851 4.041567 GGAAATGGGAAGGGATTTTTGTGT 59.958 41.667 0.00 0.00 0.00 3.72
2541 5852 5.456042 GGAAATGGGAAGGGATTTTTGTGTT 60.456 40.000 0.00 0.00 0.00 3.32
2542 5853 4.622260 ATGGGAAGGGATTTTTGTGTTG 57.378 40.909 0.00 0.00 0.00 3.33
2543 5854 3.379452 TGGGAAGGGATTTTTGTGTTGT 58.621 40.909 0.00 0.00 0.00 3.32
2544 5855 3.133721 TGGGAAGGGATTTTTGTGTTGTG 59.866 43.478 0.00 0.00 0.00 3.33
2545 5856 3.130633 GGAAGGGATTTTTGTGTTGTGC 58.869 45.455 0.00 0.00 0.00 4.57
2546 5857 2.908688 AGGGATTTTTGTGTTGTGCC 57.091 45.000 0.00 0.00 0.00 5.01
2547 5858 1.416030 AGGGATTTTTGTGTTGTGCCC 59.584 47.619 0.00 0.00 34.52 5.36
2548 5859 1.139853 GGGATTTTTGTGTTGTGCCCA 59.860 47.619 0.00 0.00 34.47 5.36
2549 5860 2.209273 GGATTTTTGTGTTGTGCCCAC 58.791 47.619 0.00 0.00 0.00 4.61
2550 5861 2.419297 GGATTTTTGTGTTGTGCCCACA 60.419 45.455 0.00 0.00 40.87 4.17
2551 5862 3.465871 GATTTTTGTGTTGTGCCCACAT 58.534 40.909 1.46 0.00 42.05 3.21
2552 5863 2.306341 TTTTGTGTTGTGCCCACATG 57.694 45.000 1.46 0.00 42.05 3.21
2553 5864 1.189752 TTTGTGTTGTGCCCACATGT 58.810 45.000 1.46 0.00 42.05 3.21
2554 5865 1.189752 TTGTGTTGTGCCCACATGTT 58.810 45.000 0.00 0.00 42.05 2.71
2555 5866 0.459078 TGTGTTGTGCCCACATGTTG 59.541 50.000 0.00 0.00 41.52 3.33
2556 5867 0.743688 GTGTTGTGCCCACATGTTGA 59.256 50.000 0.00 0.00 41.52 3.18
2557 5868 1.135915 GTGTTGTGCCCACATGTTGAA 59.864 47.619 0.00 0.00 41.52 2.69
2558 5869 1.408340 TGTTGTGCCCACATGTTGAAG 59.592 47.619 0.00 0.00 41.52 3.02
2559 5870 1.680735 GTTGTGCCCACATGTTGAAGA 59.319 47.619 0.00 0.00 41.52 2.87
2560 5871 2.291209 TGTGCCCACATGTTGAAGAT 57.709 45.000 0.00 0.00 36.21 2.40
2561 5872 3.431673 TGTGCCCACATGTTGAAGATA 57.568 42.857 0.00 0.00 36.21 1.98
2562 5873 3.760738 TGTGCCCACATGTTGAAGATAA 58.239 40.909 0.00 0.00 36.21 1.75
2563 5874 3.505680 TGTGCCCACATGTTGAAGATAAC 59.494 43.478 0.00 0.00 36.21 1.89
2564 5875 3.505680 GTGCCCACATGTTGAAGATAACA 59.494 43.478 0.00 0.00 43.93 2.41
2566 5877 5.356751 GTGCCCACATGTTGAAGATAACATA 59.643 40.000 0.00 0.00 46.49 2.29
2567 5878 5.948758 TGCCCACATGTTGAAGATAACATAA 59.051 36.000 0.00 0.00 46.49 1.90
2568 5879 6.435591 TGCCCACATGTTGAAGATAACATAAA 59.564 34.615 0.00 0.00 46.49 1.40
2569 5880 7.123997 TGCCCACATGTTGAAGATAACATAAAT 59.876 33.333 0.00 0.00 46.49 1.40
2570 5881 7.436080 GCCCACATGTTGAAGATAACATAAATG 59.564 37.037 0.00 4.14 46.49 2.32
2571 5882 8.685427 CCCACATGTTGAAGATAACATAAATGA 58.315 33.333 0.00 0.00 46.49 2.57
2586 5897 8.862325 AACATAAATGATAGTTCAGACAACCA 57.138 30.769 0.00 0.00 34.73 3.67
2587 5898 9.466497 AACATAAATGATAGTTCAGACAACCAT 57.534 29.630 0.00 0.00 34.73 3.55
2591 5902 7.865706 AATGATAGTTCAGACAACCATAACC 57.134 36.000 0.00 0.00 34.73 2.85
2592 5903 5.741011 TGATAGTTCAGACAACCATAACCC 58.259 41.667 0.00 0.00 0.00 4.11
2593 5904 3.434940 AGTTCAGACAACCATAACCCC 57.565 47.619 0.00 0.00 0.00 4.95
2594 5905 2.041216 AGTTCAGACAACCATAACCCCC 59.959 50.000 0.00 0.00 0.00 5.40
2611 5922 2.200081 CCCCCTGGTCTGGATATATGG 58.800 57.143 0.00 0.00 0.00 2.74
2612 5923 2.200081 CCCCTGGTCTGGATATATGGG 58.800 57.143 0.00 0.00 0.00 4.00
2613 5924 2.497289 CCCCTGGTCTGGATATATGGGT 60.497 54.545 0.00 0.00 0.00 4.51
2614 5925 2.573462 CCCTGGTCTGGATATATGGGTG 59.427 54.545 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.399245 AGAGGACTGTAAGAACATAAGAGAC 57.601 40.000 0.00 0.00 37.43 3.36
157 180 5.765576 TGTGGGGAAATTTACTAGCACTA 57.234 39.130 0.00 0.00 0.00 2.74
383 418 2.867287 TGTTTGTGTGTGAAGCATGG 57.133 45.000 0.00 0.00 0.00 3.66
412 447 1.564348 GCTGGAAGGAAAGTGGGGATA 59.436 52.381 0.00 0.00 0.00 2.59
573 615 1.349026 CAGACAAGAGGGAGCAAAGGA 59.651 52.381 0.00 0.00 0.00 3.36
583 625 5.476091 AAGACTTAAGACCAGACAAGAGG 57.524 43.478 10.09 0.00 0.00 3.69
1683 4377 5.376854 AGTGCAATTAAGCTAAACACAGG 57.623 39.130 0.00 0.00 34.99 4.00
1725 4419 2.685897 AGCAGAGGACGTAGAATGTCTC 59.314 50.000 0.00 0.00 34.62 3.36
1823 4724 6.561614 TGACTAACGCTATAACTTTCTCAGG 58.438 40.000 0.00 0.00 0.00 3.86
1828 4729 7.425595 GCACAAATGACTAACGCTATAACTTTC 59.574 37.037 0.00 0.00 0.00 2.62
1832 4733 6.345920 AGCACAAATGACTAACGCTATAAC 57.654 37.500 0.00 0.00 0.00 1.89
1842 5153 1.992557 AGGGGGAAGCACAAATGACTA 59.007 47.619 0.00 0.00 0.00 2.59
1857 5168 4.766632 GCCTTTGGCCTCAGGGGG 62.767 72.222 19.29 7.84 44.06 5.40
1883 5194 1.406219 CGTTCATGTCGCTCCTCACG 61.406 60.000 0.00 0.00 0.00 4.35
1995 5306 1.613928 TCCGGTAACCCCTGCATCA 60.614 57.895 0.00 0.00 0.00 3.07
2016 5327 9.448438 TCTAGACACATTTTAGTATGCATGTTT 57.552 29.630 10.16 0.00 0.00 2.83
2017 5328 9.618890 ATCTAGACACATTTTAGTATGCATGTT 57.381 29.630 10.16 0.00 0.00 2.71
2047 5358 9.691362 AGACATTTTAGCGTTTTATTGAATTGT 57.309 25.926 0.00 0.00 0.00 2.71
2066 5377 9.774413 CCCTCCGTTTACTAATATAAGACATTT 57.226 33.333 0.00 0.00 0.00 2.32
2067 5378 8.373220 CCCCTCCGTTTACTAATATAAGACATT 58.627 37.037 0.00 0.00 0.00 2.71
2068 5379 7.526693 GCCCCTCCGTTTACTAATATAAGACAT 60.527 40.741 0.00 0.00 0.00 3.06
2069 5380 6.239402 GCCCCTCCGTTTACTAATATAAGACA 60.239 42.308 0.00 0.00 0.00 3.41
2070 5381 6.014755 AGCCCCTCCGTTTACTAATATAAGAC 60.015 42.308 0.00 0.00 0.00 3.01
2071 5382 6.080009 AGCCCCTCCGTTTACTAATATAAGA 58.920 40.000 0.00 0.00 0.00 2.10
2072 5383 6.356186 AGCCCCTCCGTTTACTAATATAAG 57.644 41.667 0.00 0.00 0.00 1.73
2073 5384 7.455638 ACATAGCCCCTCCGTTTACTAATATAA 59.544 37.037 0.00 0.00 0.00 0.98
2074 5385 6.955851 ACATAGCCCCTCCGTTTACTAATATA 59.044 38.462 0.00 0.00 0.00 0.86
2075 5386 5.783875 ACATAGCCCCTCCGTTTACTAATAT 59.216 40.000 0.00 0.00 0.00 1.28
2076 5387 5.149976 ACATAGCCCCTCCGTTTACTAATA 58.850 41.667 0.00 0.00 0.00 0.98
2077 5388 3.971971 ACATAGCCCCTCCGTTTACTAAT 59.028 43.478 0.00 0.00 0.00 1.73
2078 5389 3.377573 ACATAGCCCCTCCGTTTACTAA 58.622 45.455 0.00 0.00 0.00 2.24
2079 5390 3.036452 ACATAGCCCCTCCGTTTACTA 57.964 47.619 0.00 0.00 0.00 1.82
2080 5391 1.875488 ACATAGCCCCTCCGTTTACT 58.125 50.000 0.00 0.00 0.00 2.24
2081 5392 2.704464 AACATAGCCCCTCCGTTTAC 57.296 50.000 0.00 0.00 0.00 2.01
2082 5393 3.106054 TGTAACATAGCCCCTCCGTTTA 58.894 45.455 0.00 0.00 0.00 2.01
2083 5394 1.910671 TGTAACATAGCCCCTCCGTTT 59.089 47.619 0.00 0.00 0.00 3.60
2084 5395 1.485066 CTGTAACATAGCCCCTCCGTT 59.515 52.381 0.00 0.00 0.00 4.44
2085 5396 1.120530 CTGTAACATAGCCCCTCCGT 58.879 55.000 0.00 0.00 0.00 4.69
2086 5397 0.249911 GCTGTAACATAGCCCCTCCG 60.250 60.000 0.00 0.00 35.15 4.63
2087 5398 0.249911 CGCTGTAACATAGCCCCTCC 60.250 60.000 0.00 0.00 37.90 4.30
2088 5399 0.464452 ACGCTGTAACATAGCCCCTC 59.536 55.000 0.00 0.00 37.90 4.30
2089 5400 0.178068 CACGCTGTAACATAGCCCCT 59.822 55.000 0.00 0.00 37.90 4.79
2090 5401 0.814010 CCACGCTGTAACATAGCCCC 60.814 60.000 0.00 0.00 37.90 5.80
2091 5402 1.436983 GCCACGCTGTAACATAGCCC 61.437 60.000 0.00 0.00 37.90 5.19
2092 5403 0.742990 TGCCACGCTGTAACATAGCC 60.743 55.000 0.00 0.00 37.90 3.93
2093 5404 1.083489 TTGCCACGCTGTAACATAGC 58.917 50.000 0.00 0.00 37.80 2.97
2094 5405 2.935849 TCATTGCCACGCTGTAACATAG 59.064 45.455 0.00 0.00 0.00 2.23
2095 5406 2.675844 GTCATTGCCACGCTGTAACATA 59.324 45.455 0.00 0.00 0.00 2.29
2096 5407 1.468520 GTCATTGCCACGCTGTAACAT 59.531 47.619 0.00 0.00 0.00 2.71
2097 5408 0.871722 GTCATTGCCACGCTGTAACA 59.128 50.000 0.00 0.00 0.00 2.41
2098 5409 1.156736 AGTCATTGCCACGCTGTAAC 58.843 50.000 0.00 0.00 0.00 2.50
2099 5410 1.535028 CAAGTCATTGCCACGCTGTAA 59.465 47.619 0.00 0.00 0.00 2.41
2100 5411 1.155889 CAAGTCATTGCCACGCTGTA 58.844 50.000 0.00 0.00 0.00 2.74
2101 5412 1.518056 CCAAGTCATTGCCACGCTGT 61.518 55.000 0.00 0.00 34.91 4.40
2102 5413 1.210931 CCAAGTCATTGCCACGCTG 59.789 57.895 0.00 0.00 34.91 5.18
2103 5414 0.957395 CTCCAAGTCATTGCCACGCT 60.957 55.000 0.00 0.00 34.91 5.07
2104 5415 0.955428 TCTCCAAGTCATTGCCACGC 60.955 55.000 0.00 0.00 34.91 5.34
2105 5416 1.742761 ATCTCCAAGTCATTGCCACG 58.257 50.000 0.00 0.00 34.91 4.94
2106 5417 3.496130 CGATATCTCCAAGTCATTGCCAC 59.504 47.826 0.34 0.00 34.91 5.01
2107 5418 3.387699 TCGATATCTCCAAGTCATTGCCA 59.612 43.478 0.34 0.00 34.91 4.92
2108 5419 3.995199 TCGATATCTCCAAGTCATTGCC 58.005 45.455 0.34 0.00 34.91 4.52
2109 5420 6.551385 AATTCGATATCTCCAAGTCATTGC 57.449 37.500 0.34 0.00 34.91 3.56
2110 5421 6.854892 GCAAATTCGATATCTCCAAGTCATTG 59.145 38.462 0.34 0.00 36.09 2.82
2111 5422 6.016777 GGCAAATTCGATATCTCCAAGTCATT 60.017 38.462 0.34 0.00 0.00 2.57
2112 5423 5.471456 GGCAAATTCGATATCTCCAAGTCAT 59.529 40.000 0.34 0.00 0.00 3.06
2113 5424 4.816385 GGCAAATTCGATATCTCCAAGTCA 59.184 41.667 0.34 0.00 0.00 3.41
2114 5425 5.059833 AGGCAAATTCGATATCTCCAAGTC 58.940 41.667 0.34 0.00 0.00 3.01
2115 5426 5.041191 AGGCAAATTCGATATCTCCAAGT 57.959 39.130 0.34 0.00 0.00 3.16
2116 5427 5.297776 ACAAGGCAAATTCGATATCTCCAAG 59.702 40.000 0.34 0.00 0.00 3.61
2117 5428 5.192927 ACAAGGCAAATTCGATATCTCCAA 58.807 37.500 0.34 0.00 0.00 3.53
2118 5429 4.780815 ACAAGGCAAATTCGATATCTCCA 58.219 39.130 0.34 0.00 0.00 3.86
2119 5430 5.296780 TCAACAAGGCAAATTCGATATCTCC 59.703 40.000 0.34 0.00 0.00 3.71
2120 5431 6.037610 AGTCAACAAGGCAAATTCGATATCTC 59.962 38.462 0.34 0.00 0.00 2.75
2121 5432 5.882557 AGTCAACAAGGCAAATTCGATATCT 59.117 36.000 0.34 0.00 0.00 1.98
2122 5433 6.037610 AGAGTCAACAAGGCAAATTCGATATC 59.962 38.462 0.00 0.00 0.00 1.63
2123 5434 5.882557 AGAGTCAACAAGGCAAATTCGATAT 59.117 36.000 0.00 0.00 0.00 1.63
2124 5435 5.122239 CAGAGTCAACAAGGCAAATTCGATA 59.878 40.000 0.00 0.00 0.00 2.92
2125 5436 4.074970 AGAGTCAACAAGGCAAATTCGAT 58.925 39.130 0.00 0.00 0.00 3.59
2126 5437 3.250762 CAGAGTCAACAAGGCAAATTCGA 59.749 43.478 0.00 0.00 0.00 3.71
2127 5438 3.558505 CAGAGTCAACAAGGCAAATTCG 58.441 45.455 0.00 0.00 0.00 3.34
2128 5439 3.305608 CCCAGAGTCAACAAGGCAAATTC 60.306 47.826 0.00 0.00 0.00 2.17
2129 5440 2.629617 CCCAGAGTCAACAAGGCAAATT 59.370 45.455 0.00 0.00 0.00 1.82
2130 5441 2.242043 CCCAGAGTCAACAAGGCAAAT 58.758 47.619 0.00 0.00 0.00 2.32
2131 5442 1.691196 CCCAGAGTCAACAAGGCAAA 58.309 50.000 0.00 0.00 0.00 3.68
2132 5443 0.178992 CCCCAGAGTCAACAAGGCAA 60.179 55.000 0.00 0.00 0.00 4.52
2133 5444 1.352622 ACCCCAGAGTCAACAAGGCA 61.353 55.000 0.00 0.00 0.00 4.75
2134 5445 0.890996 CACCCCAGAGTCAACAAGGC 60.891 60.000 0.00 0.00 0.00 4.35
2135 5446 0.250901 CCACCCCAGAGTCAACAAGG 60.251 60.000 0.00 0.00 0.00 3.61
2136 5447 0.250901 CCCACCCCAGAGTCAACAAG 60.251 60.000 0.00 0.00 0.00 3.16
2137 5448 1.715019 CCCCACCCCAGAGTCAACAA 61.715 60.000 0.00 0.00 0.00 2.83
2138 5449 2.153401 CCCCACCCCAGAGTCAACA 61.153 63.158 0.00 0.00 0.00 3.33
2139 5450 2.757077 CCCCACCCCAGAGTCAAC 59.243 66.667 0.00 0.00 0.00 3.18
2140 5451 2.531685 CCCCCACCCCAGAGTCAA 60.532 66.667 0.00 0.00 0.00 3.18
2365 5676 4.934316 AGGAGTCCCTCGCTATCC 57.066 61.111 5.25 0.00 38.86 2.59
2373 5684 0.551131 ATTGCCAAGGAGGAGTCCCT 60.551 55.000 5.25 0.00 45.26 4.20
2374 5685 0.106967 GATTGCCAAGGAGGAGTCCC 60.107 60.000 5.25 0.00 45.26 4.46
2375 5686 0.106967 GGATTGCCAAGGAGGAGTCC 60.107 60.000 0.00 0.00 44.33 3.85
2376 5687 0.620556 TGGATTGCCAAGGAGGAGTC 59.379 55.000 0.00 0.00 42.49 3.36
2377 5688 2.791253 TGGATTGCCAAGGAGGAGT 58.209 52.632 0.00 0.00 42.49 3.85
2387 5698 4.037208 CACCATACTTTCTCATGGATTGCC 59.963 45.833 7.57 0.00 43.80 4.52
2388 5699 4.641989 ACACCATACTTTCTCATGGATTGC 59.358 41.667 7.57 0.00 43.80 3.56
2389 5700 5.882000 TCACACCATACTTTCTCATGGATTG 59.118 40.000 7.57 4.30 43.80 2.67
2390 5701 6.065976 TCACACCATACTTTCTCATGGATT 57.934 37.500 7.57 0.00 43.80 3.01
2391 5702 5.698741 TCACACCATACTTTCTCATGGAT 57.301 39.130 7.57 0.00 43.80 3.41
2392 5703 5.491070 CTTCACACCATACTTTCTCATGGA 58.509 41.667 7.57 0.00 43.80 3.41
2393 5704 4.637534 CCTTCACACCATACTTTCTCATGG 59.362 45.833 0.00 0.00 46.05 3.66
2394 5705 5.491070 TCCTTCACACCATACTTTCTCATG 58.509 41.667 0.00 0.00 0.00 3.07
2395 5706 5.485353 TCTCCTTCACACCATACTTTCTCAT 59.515 40.000 0.00 0.00 0.00 2.90
2396 5707 4.838423 TCTCCTTCACACCATACTTTCTCA 59.162 41.667 0.00 0.00 0.00 3.27
2397 5708 5.186021 TCTCTCCTTCACACCATACTTTCTC 59.814 44.000 0.00 0.00 0.00 2.87
2398 5709 5.087323 TCTCTCCTTCACACCATACTTTCT 58.913 41.667 0.00 0.00 0.00 2.52
2399 5710 5.407407 TCTCTCCTTCACACCATACTTTC 57.593 43.478 0.00 0.00 0.00 2.62
2400 5711 5.280215 CCTTCTCTCCTTCACACCATACTTT 60.280 44.000 0.00 0.00 0.00 2.66
2401 5712 4.223923 CCTTCTCTCCTTCACACCATACTT 59.776 45.833 0.00 0.00 0.00 2.24
2402 5713 3.772025 CCTTCTCTCCTTCACACCATACT 59.228 47.826 0.00 0.00 0.00 2.12
2403 5714 3.515901 ACCTTCTCTCCTTCACACCATAC 59.484 47.826 0.00 0.00 0.00 2.39
2404 5715 3.515502 CACCTTCTCTCCTTCACACCATA 59.484 47.826 0.00 0.00 0.00 2.74
2405 5716 2.304180 CACCTTCTCTCCTTCACACCAT 59.696 50.000 0.00 0.00 0.00 3.55
2406 5717 1.694150 CACCTTCTCTCCTTCACACCA 59.306 52.381 0.00 0.00 0.00 4.17
2407 5718 1.971357 TCACCTTCTCTCCTTCACACC 59.029 52.381 0.00 0.00 0.00 4.16
2408 5719 2.028567 CCTCACCTTCTCTCCTTCACAC 60.029 54.545 0.00 0.00 0.00 3.82
2409 5720 2.251818 CCTCACCTTCTCTCCTTCACA 58.748 52.381 0.00 0.00 0.00 3.58
2410 5721 2.028567 CACCTCACCTTCTCTCCTTCAC 60.029 54.545 0.00 0.00 0.00 3.18
2411 5722 2.251818 CACCTCACCTTCTCTCCTTCA 58.748 52.381 0.00 0.00 0.00 3.02
2412 5723 1.552792 CCACCTCACCTTCTCTCCTTC 59.447 57.143 0.00 0.00 0.00 3.46
2413 5724 1.650528 CCACCTCACCTTCTCTCCTT 58.349 55.000 0.00 0.00 0.00 3.36
2414 5725 0.907230 GCCACCTCACCTTCTCTCCT 60.907 60.000 0.00 0.00 0.00 3.69
2415 5726 1.194781 TGCCACCTCACCTTCTCTCC 61.195 60.000 0.00 0.00 0.00 3.71
2416 5727 0.908198 ATGCCACCTCACCTTCTCTC 59.092 55.000 0.00 0.00 0.00 3.20
2417 5728 0.908198 GATGCCACCTCACCTTCTCT 59.092 55.000 0.00 0.00 0.00 3.10
2418 5729 0.615331 TGATGCCACCTCACCTTCTC 59.385 55.000 0.00 0.00 0.00 2.87
2419 5730 1.293062 ATGATGCCACCTCACCTTCT 58.707 50.000 0.00 0.00 0.00 2.85
2420 5731 2.134789 AATGATGCCACCTCACCTTC 57.865 50.000 0.00 0.00 0.00 3.46
2421 5732 2.173519 CAAATGATGCCACCTCACCTT 58.826 47.619 0.00 0.00 0.00 3.50
2422 5733 1.617804 CCAAATGATGCCACCTCACCT 60.618 52.381 0.00 0.00 0.00 4.00
2423 5734 0.819582 CCAAATGATGCCACCTCACC 59.180 55.000 0.00 0.00 0.00 4.02
2424 5735 1.549203 ACCAAATGATGCCACCTCAC 58.451 50.000 0.00 0.00 0.00 3.51
2425 5736 2.307496 AACCAAATGATGCCACCTCA 57.693 45.000 0.00 0.00 0.00 3.86
2426 5737 3.683365 AAAACCAAATGATGCCACCTC 57.317 42.857 0.00 0.00 0.00 3.85
2427 5738 5.306678 TCTTTAAAACCAAATGATGCCACCT 59.693 36.000 0.00 0.00 0.00 4.00
2428 5739 5.546526 TCTTTAAAACCAAATGATGCCACC 58.453 37.500 0.00 0.00 0.00 4.61
2429 5740 6.928492 TCTTCTTTAAAACCAAATGATGCCAC 59.072 34.615 0.00 0.00 0.00 5.01
2430 5741 7.060383 TCTTCTTTAAAACCAAATGATGCCA 57.940 32.000 0.00 0.00 0.00 4.92
2431 5742 6.591448 CCTCTTCTTTAAAACCAAATGATGCC 59.409 38.462 0.00 0.00 0.00 4.40
2432 5743 7.329471 GTCCTCTTCTTTAAAACCAAATGATGC 59.671 37.037 0.00 0.00 0.00 3.91
2433 5744 8.579863 AGTCCTCTTCTTTAAAACCAAATGATG 58.420 33.333 0.00 0.00 0.00 3.07
2434 5745 8.712228 AGTCCTCTTCTTTAAAACCAAATGAT 57.288 30.769 0.00 0.00 0.00 2.45
2435 5746 7.998964 AGAGTCCTCTTCTTTAAAACCAAATGA 59.001 33.333 0.00 0.00 36.31 2.57
2436 5747 8.171164 AGAGTCCTCTTCTTTAAAACCAAATG 57.829 34.615 0.00 0.00 36.31 2.32
2437 5748 9.508642 CTAGAGTCCTCTTCTTTAAAACCAAAT 57.491 33.333 1.52 0.00 40.93 2.32
2438 5749 7.444487 GCTAGAGTCCTCTTCTTTAAAACCAAA 59.556 37.037 1.52 0.00 40.93 3.28
2439 5750 6.935208 GCTAGAGTCCTCTTCTTTAAAACCAA 59.065 38.462 1.52 0.00 40.93 3.67
2440 5751 6.042781 TGCTAGAGTCCTCTTCTTTAAAACCA 59.957 38.462 1.52 0.00 40.93 3.67
2441 5752 6.465084 TGCTAGAGTCCTCTTCTTTAAAACC 58.535 40.000 1.52 0.00 40.93 3.27
2442 5753 7.873505 TCTTGCTAGAGTCCTCTTCTTTAAAAC 59.126 37.037 1.52 0.00 40.93 2.43
2443 5754 7.963532 TCTTGCTAGAGTCCTCTTCTTTAAAA 58.036 34.615 1.52 0.00 40.93 1.52
2444 5755 7.540474 TCTTGCTAGAGTCCTCTTCTTTAAA 57.460 36.000 1.52 0.00 40.93 1.52
2445 5756 7.540474 TTCTTGCTAGAGTCCTCTTCTTTAA 57.460 36.000 1.52 0.00 40.93 1.52
2446 5757 7.540474 TTTCTTGCTAGAGTCCTCTTCTTTA 57.460 36.000 1.52 0.00 40.93 1.85
2447 5758 6.426646 TTTCTTGCTAGAGTCCTCTTCTTT 57.573 37.500 1.52 0.00 40.93 2.52
2448 5759 6.619329 ATTTCTTGCTAGAGTCCTCTTCTT 57.381 37.500 1.52 0.00 40.93 2.52
2449 5760 6.619329 AATTTCTTGCTAGAGTCCTCTTCT 57.381 37.500 1.52 0.00 40.93 2.85
2450 5761 6.315144 GGAAATTTCTTGCTAGAGTCCTCTTC 59.685 42.308 17.42 0.00 40.93 2.87
2451 5762 6.176896 GGAAATTTCTTGCTAGAGTCCTCTT 58.823 40.000 17.42 0.00 40.93 2.85
2452 5763 5.338789 GGGAAATTTCTTGCTAGAGTCCTCT 60.339 44.000 17.42 1.90 43.40 3.69
2453 5764 4.878971 GGGAAATTTCTTGCTAGAGTCCTC 59.121 45.833 17.42 5.56 0.00 3.71
2454 5765 4.289672 TGGGAAATTTCTTGCTAGAGTCCT 59.710 41.667 17.42 0.00 0.00 3.85
2455 5766 4.396478 GTGGGAAATTTCTTGCTAGAGTCC 59.604 45.833 17.42 6.94 0.00 3.85
2456 5767 5.249420 AGTGGGAAATTTCTTGCTAGAGTC 58.751 41.667 17.42 0.00 0.00 3.36
2457 5768 5.248380 AGTGGGAAATTTCTTGCTAGAGT 57.752 39.130 17.42 0.00 0.00 3.24
2458 5769 6.261826 CCATAGTGGGAAATTTCTTGCTAGAG 59.738 42.308 17.42 12.06 32.67 2.43
2459 5770 6.122277 CCATAGTGGGAAATTTCTTGCTAGA 58.878 40.000 17.42 0.00 32.67 2.43
2460 5771 5.221126 GCCATAGTGGGAAATTTCTTGCTAG 60.221 44.000 17.42 7.75 38.19 3.42
2461 5772 4.644685 GCCATAGTGGGAAATTTCTTGCTA 59.355 41.667 17.42 15.29 38.19 3.49
2462 5773 3.448660 GCCATAGTGGGAAATTTCTTGCT 59.551 43.478 17.42 13.87 38.19 3.91
2463 5774 3.734902 CGCCATAGTGGGAAATTTCTTGC 60.735 47.826 17.42 7.95 38.19 4.01
2464 5775 3.443681 ACGCCATAGTGGGAAATTTCTTG 59.556 43.478 17.42 6.51 38.19 3.02
2465 5776 3.443681 CACGCCATAGTGGGAAATTTCTT 59.556 43.478 17.42 4.61 38.19 2.52
2466 5777 3.016736 CACGCCATAGTGGGAAATTTCT 58.983 45.455 17.42 0.70 38.19 2.52
2467 5778 3.013921 TCACGCCATAGTGGGAAATTTC 58.986 45.455 9.83 9.83 42.10 2.17
2468 5779 3.080300 TCACGCCATAGTGGGAAATTT 57.920 42.857 0.00 0.00 42.10 1.82
2469 5780 2.799126 TCACGCCATAGTGGGAAATT 57.201 45.000 0.00 0.00 42.10 1.82
2470 5781 2.799126 TTCACGCCATAGTGGGAAAT 57.201 45.000 0.00 0.00 42.86 2.17
2472 5783 1.612199 GGTTTCACGCCATAGTGGGAA 60.612 52.381 0.00 0.00 44.11 3.97
2473 5784 0.035820 GGTTTCACGCCATAGTGGGA 60.036 55.000 0.00 0.00 42.10 4.37
2474 5785 1.366111 CGGTTTCACGCCATAGTGGG 61.366 60.000 0.00 0.00 42.10 4.61
2475 5786 0.390603 TCGGTTTCACGCCATAGTGG 60.391 55.000 0.00 0.00 42.10 4.00
2476 5787 0.999406 CTCGGTTTCACGCCATAGTG 59.001 55.000 0.00 0.00 43.11 2.74
2477 5788 0.739813 GCTCGGTTTCACGCCATAGT 60.740 55.000 0.00 0.00 0.00 2.12
2478 5789 1.752501 CGCTCGGTTTCACGCCATAG 61.753 60.000 0.00 0.00 0.00 2.23
2479 5790 1.807981 CGCTCGGTTTCACGCCATA 60.808 57.895 0.00 0.00 0.00 2.74
2480 5791 3.118454 CGCTCGGTTTCACGCCAT 61.118 61.111 0.00 0.00 0.00 4.40
2481 5792 4.287781 TCGCTCGGTTTCACGCCA 62.288 61.111 0.00 0.00 0.00 5.69
2482 5793 3.479269 CTCGCTCGGTTTCACGCC 61.479 66.667 0.00 0.00 0.00 5.68
2483 5794 1.945776 CTTCTCGCTCGGTTTCACGC 61.946 60.000 0.00 0.00 0.00 5.34
2484 5795 1.945776 GCTTCTCGCTCGGTTTCACG 61.946 60.000 0.00 0.00 35.14 4.35
2485 5796 1.782181 GCTTCTCGCTCGGTTTCAC 59.218 57.895 0.00 0.00 35.14 3.18
2486 5797 1.733041 CGCTTCTCGCTCGGTTTCA 60.733 57.895 0.00 0.00 36.13 2.69
2487 5798 2.445438 CCGCTTCTCGCTCGGTTTC 61.445 63.158 0.00 0.00 38.47 2.78
2488 5799 2.432628 CCGCTTCTCGCTCGGTTT 60.433 61.111 0.00 0.00 38.47 3.27
2489 5800 3.343788 CTCCGCTTCTCGCTCGGTT 62.344 63.158 0.00 0.00 43.35 4.44
2490 5801 3.816524 CTCCGCTTCTCGCTCGGT 61.817 66.667 0.00 0.00 43.35 4.69
2491 5802 4.560856 CCTCCGCTTCTCGCTCGG 62.561 72.222 0.00 0.00 44.16 4.63
2492 5803 4.560856 CCCTCCGCTTCTCGCTCG 62.561 72.222 0.00 0.00 36.73 5.03
2493 5804 3.418744 GACCCTCCGCTTCTCGCTC 62.419 68.421 0.00 0.00 36.73 5.03
2494 5805 3.453679 GACCCTCCGCTTCTCGCT 61.454 66.667 0.00 0.00 36.73 4.93
2495 5806 3.760035 TGACCCTCCGCTTCTCGC 61.760 66.667 0.00 0.00 36.73 5.03
2496 5807 1.949847 ATGTGACCCTCCGCTTCTCG 61.950 60.000 0.00 0.00 38.08 4.04
2497 5808 1.067821 CTATGTGACCCTCCGCTTCTC 59.932 57.143 0.00 0.00 0.00 2.87
2498 5809 1.115467 CTATGTGACCCTCCGCTTCT 58.885 55.000 0.00 0.00 0.00 2.85
2499 5810 0.105039 CCTATGTGACCCTCCGCTTC 59.895 60.000 0.00 0.00 0.00 3.86
2500 5811 0.325296 TCCTATGTGACCCTCCGCTT 60.325 55.000 0.00 0.00 0.00 4.68
2501 5812 0.325296 TTCCTATGTGACCCTCCGCT 60.325 55.000 0.00 0.00 0.00 5.52
2502 5813 0.539986 TTTCCTATGTGACCCTCCGC 59.460 55.000 0.00 0.00 0.00 5.54
2503 5814 2.485479 CCATTTCCTATGTGACCCTCCG 60.485 54.545 0.00 0.00 0.00 4.63
2504 5815 2.158608 CCCATTTCCTATGTGACCCTCC 60.159 54.545 0.00 0.00 0.00 4.30
2505 5816 2.777692 TCCCATTTCCTATGTGACCCTC 59.222 50.000 0.00 0.00 0.00 4.30
2506 5817 2.858644 TCCCATTTCCTATGTGACCCT 58.141 47.619 0.00 0.00 0.00 4.34
2507 5818 3.555966 CTTCCCATTTCCTATGTGACCC 58.444 50.000 0.00 0.00 0.00 4.46
2508 5819 3.555966 CCTTCCCATTTCCTATGTGACC 58.444 50.000 0.00 0.00 0.00 4.02
2509 5820 3.202151 TCCCTTCCCATTTCCTATGTGAC 59.798 47.826 0.00 0.00 0.00 3.67
2510 5821 3.469859 TCCCTTCCCATTTCCTATGTGA 58.530 45.455 0.00 0.00 0.00 3.58
2511 5822 3.951563 TCCCTTCCCATTTCCTATGTG 57.048 47.619 0.00 0.00 0.00 3.21
2512 5823 5.487861 AAATCCCTTCCCATTTCCTATGT 57.512 39.130 0.00 0.00 0.00 2.29
2513 5824 6.156775 ACAAAAATCCCTTCCCATTTCCTATG 59.843 38.462 0.00 0.00 0.00 2.23
2514 5825 6.156775 CACAAAAATCCCTTCCCATTTCCTAT 59.843 38.462 0.00 0.00 0.00 2.57
2515 5826 5.483583 CACAAAAATCCCTTCCCATTTCCTA 59.516 40.000 0.00 0.00 0.00 2.94
2516 5827 4.286808 CACAAAAATCCCTTCCCATTTCCT 59.713 41.667 0.00 0.00 0.00 3.36
2517 5828 4.041567 ACACAAAAATCCCTTCCCATTTCC 59.958 41.667 0.00 0.00 0.00 3.13
2518 5829 5.227569 ACACAAAAATCCCTTCCCATTTC 57.772 39.130 0.00 0.00 0.00 2.17
2519 5830 5.104151 ACAACACAAAAATCCCTTCCCATTT 60.104 36.000 0.00 0.00 0.00 2.32
2520 5831 4.411869 ACAACACAAAAATCCCTTCCCATT 59.588 37.500 0.00 0.00 0.00 3.16
2521 5832 3.973305 ACAACACAAAAATCCCTTCCCAT 59.027 39.130 0.00 0.00 0.00 4.00
2522 5833 3.133721 CACAACACAAAAATCCCTTCCCA 59.866 43.478 0.00 0.00 0.00 4.37
2523 5834 3.727726 CACAACACAAAAATCCCTTCCC 58.272 45.455 0.00 0.00 0.00 3.97
2524 5835 3.130633 GCACAACACAAAAATCCCTTCC 58.869 45.455 0.00 0.00 0.00 3.46
2525 5836 3.130633 GGCACAACACAAAAATCCCTTC 58.869 45.455 0.00 0.00 0.00 3.46
2526 5837 2.158827 GGGCACAACACAAAAATCCCTT 60.159 45.455 0.00 0.00 0.00 3.95
2527 5838 1.416030 GGGCACAACACAAAAATCCCT 59.584 47.619 0.00 0.00 0.00 4.20
2528 5839 1.139853 TGGGCACAACACAAAAATCCC 59.860 47.619 0.00 0.00 0.00 3.85
2529 5840 2.209273 GTGGGCACAACACAAAAATCC 58.791 47.619 0.00 0.00 38.67 3.01
2530 5841 2.898705 TGTGGGCACAACACAAAAATC 58.101 42.857 0.00 0.00 45.05 2.17
2537 5848 0.743688 TCAACATGTGGGCACAACAC 59.256 50.000 0.00 0.00 45.41 3.32
2538 5849 1.408340 CTTCAACATGTGGGCACAACA 59.592 47.619 0.00 0.00 45.41 3.33
2539 5850 1.680735 TCTTCAACATGTGGGCACAAC 59.319 47.619 0.00 0.00 45.41 3.32
2540 5851 2.064434 TCTTCAACATGTGGGCACAA 57.936 45.000 0.00 0.00 45.41 3.33
2541 5852 2.291209 ATCTTCAACATGTGGGCACA 57.709 45.000 0.00 0.00 46.44 4.57
2542 5853 3.505680 TGTTATCTTCAACATGTGGGCAC 59.494 43.478 0.00 0.00 33.55 5.01
2543 5854 3.760738 TGTTATCTTCAACATGTGGGCA 58.239 40.909 0.00 0.00 33.55 5.36
2544 5855 4.989279 ATGTTATCTTCAACATGTGGGC 57.011 40.909 0.00 0.00 45.22 5.36
2545 5856 8.685427 TCATTTATGTTATCTTCAACATGTGGG 58.315 33.333 0.00 0.00 46.13 4.61
2560 5871 9.952030 TGGTTGTCTGAACTATCATTTATGTTA 57.048 29.630 0.00 0.00 34.37 2.41
2561 5872 8.862325 TGGTTGTCTGAACTATCATTTATGTT 57.138 30.769 0.00 0.00 34.37 2.71
2565 5876 9.391006 GGTTATGGTTGTCTGAACTATCATTTA 57.609 33.333 0.00 0.00 34.45 1.40
2566 5877 7.339466 GGGTTATGGTTGTCTGAACTATCATTT 59.661 37.037 0.00 0.00 34.45 2.32
2567 5878 6.828785 GGGTTATGGTTGTCTGAACTATCATT 59.171 38.462 0.00 0.00 34.45 2.57
2568 5879 6.357367 GGGTTATGGTTGTCTGAACTATCAT 58.643 40.000 0.00 0.00 36.24 2.45
2569 5880 5.338871 GGGGTTATGGTTGTCTGAACTATCA 60.339 44.000 0.00 0.00 0.00 2.15
2570 5881 5.123936 GGGGTTATGGTTGTCTGAACTATC 58.876 45.833 0.00 0.00 0.00 2.08
2571 5882 4.079958 GGGGGTTATGGTTGTCTGAACTAT 60.080 45.833 0.00 0.00 0.00 2.12
2572 5883 3.264964 GGGGGTTATGGTTGTCTGAACTA 59.735 47.826 0.00 0.00 0.00 2.24
2573 5884 2.041216 GGGGGTTATGGTTGTCTGAACT 59.959 50.000 0.00 0.00 0.00 3.01
2574 5885 2.443416 GGGGGTTATGGTTGTCTGAAC 58.557 52.381 0.00 0.00 0.00 3.18
2575 5886 2.891191 GGGGGTTATGGTTGTCTGAA 57.109 50.000 0.00 0.00 0.00 3.02
2591 5902 2.200081 CCATATATCCAGACCAGGGGG 58.800 57.143 0.00 0.00 41.29 5.40
2592 5903 2.200081 CCCATATATCCAGACCAGGGG 58.800 57.143 0.00 0.00 0.00 4.79
2593 5904 2.573462 CACCCATATATCCAGACCAGGG 59.427 54.545 0.00 0.00 40.88 4.45
2594 5905 3.988976 CACCCATATATCCAGACCAGG 57.011 52.381 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.