Multiple sequence alignment - TraesCS6A01G349500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G349500 chr6A 100.000 3897 0 0 1 3897 581842859 581838963 0.000000e+00 7197
1 TraesCS6A01G349500 chr6D 89.186 3893 217 91 132 3897 434486054 434482239 0.000000e+00 4669
2 TraesCS6A01G349500 chr6B 89.597 2528 128 59 1456 3897 657653001 657650523 0.000000e+00 3086
3 TraesCS6A01G349500 chr6B 88.338 1149 101 16 91 1227 657654260 657653133 0.000000e+00 1349
4 TraesCS6A01G349500 chr6B 98.913 92 1 0 1 92 207241681 207241590 8.660000e-37 165
5 TraesCS6A01G349500 chr4A 76.516 1039 174 45 1831 2838 595936245 595937244 1.620000e-138 503
6 TraesCS6A01G349500 chr3D 95.604 91 4 0 1 91 26642352 26642442 3.140000e-31 147
7 TraesCS6A01G349500 chr2D 96.923 65 2 0 1 65 427332480 427332416 4.120000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G349500 chr6A 581838963 581842859 3896 True 7197.0 7197 100.0000 1 3897 1 chr6A.!!$R1 3896
1 TraesCS6A01G349500 chr6D 434482239 434486054 3815 True 4669.0 4669 89.1860 132 3897 1 chr6D.!!$R1 3765
2 TraesCS6A01G349500 chr6B 657650523 657654260 3737 True 2217.5 3086 88.9675 91 3897 2 chr6B.!!$R2 3806
3 TraesCS6A01G349500 chr4A 595936245 595937244 999 False 503.0 503 76.5160 1831 2838 1 chr4A.!!$F1 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 806 0.099968 TCGCGGTTTCGTCTGGATAG 59.900 55.0 6.13 0.0 38.89 2.08 F
1093 1114 0.882927 TGGAGTTTTGCGAAGGTCGG 60.883 55.0 0.00 0.0 40.84 4.79 F
1094 1115 0.883370 GGAGTTTTGCGAAGGTCGGT 60.883 55.0 0.00 0.0 40.84 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 1881 0.871722 CCCGCTTGTCGTCAAAATCA 59.128 50.000 0.0 0.0 36.19 2.57 R
2299 2459 2.061773 AGACGACATTCACGAGCAAAG 58.938 47.619 0.0 0.0 34.70 2.77 R
2907 3108 2.079158 AGAGAACATGCATTGGACACG 58.921 47.619 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.432980 AGTTCAGGGGGTTATTTATCCG 57.567 45.455 0.00 0.00 0.00 4.18
24 25 3.137728 AGTTCAGGGGGTTATTTATCCGG 59.862 47.826 0.00 0.00 0.00 5.14
25 26 2.779163 TCAGGGGGTTATTTATCCGGT 58.221 47.619 0.00 0.00 0.00 5.28
26 27 3.124861 TCAGGGGGTTATTTATCCGGTT 58.875 45.455 0.00 0.00 0.00 4.44
27 28 3.528491 TCAGGGGGTTATTTATCCGGTTT 59.472 43.478 0.00 0.00 0.00 3.27
28 29 3.887110 CAGGGGGTTATTTATCCGGTTTC 59.113 47.826 0.00 0.00 0.00 2.78
29 30 2.880268 GGGGGTTATTTATCCGGTTTCG 59.120 50.000 0.00 0.00 0.00 3.46
39 40 4.278956 CGGTTTCGGAGTTCAGGG 57.721 61.111 0.00 0.00 0.00 4.45
40 41 1.375523 CGGTTTCGGAGTTCAGGGG 60.376 63.158 0.00 0.00 0.00 4.79
41 42 1.002502 GGTTTCGGAGTTCAGGGGG 60.003 63.158 0.00 0.00 0.00 5.40
60 61 2.826674 GGATTTGGTCCATCAAGGGA 57.173 50.000 0.00 0.00 46.96 4.20
61 62 2.659428 GGATTTGGTCCATCAAGGGAG 58.341 52.381 0.00 0.00 46.96 4.30
62 63 2.242196 GGATTTGGTCCATCAAGGGAGA 59.758 50.000 0.00 0.00 46.96 3.71
63 64 3.117360 GGATTTGGTCCATCAAGGGAGAT 60.117 47.826 0.00 0.00 46.96 2.75
64 65 4.540715 GATTTGGTCCATCAAGGGAGATT 58.459 43.478 0.00 0.00 37.71 2.40
65 66 4.402616 TTTGGTCCATCAAGGGAGATTT 57.597 40.909 0.00 0.00 37.71 2.17
66 67 3.652057 TGGTCCATCAAGGGAGATTTC 57.348 47.619 0.00 0.00 37.71 2.17
67 68 2.918934 TGGTCCATCAAGGGAGATTTCA 59.081 45.455 0.00 0.00 37.71 2.69
68 69 3.054139 TGGTCCATCAAGGGAGATTTCAG 60.054 47.826 0.00 0.00 37.71 3.02
69 70 3.549794 GTCCATCAAGGGAGATTTCAGG 58.450 50.000 0.00 0.00 37.71 3.86
70 71 2.511218 TCCATCAAGGGAGATTTCAGGG 59.489 50.000 0.00 0.00 38.24 4.45
71 72 2.423947 CCATCAAGGGAGATTTCAGGGG 60.424 54.545 0.00 0.00 0.00 4.79
72 73 1.298953 TCAAGGGAGATTTCAGGGGG 58.701 55.000 0.00 0.00 0.00 5.40
73 74 1.203557 TCAAGGGAGATTTCAGGGGGA 60.204 52.381 0.00 0.00 0.00 4.81
74 75 1.213926 CAAGGGAGATTTCAGGGGGAG 59.786 57.143 0.00 0.00 0.00 4.30
75 76 0.725133 AGGGAGATTTCAGGGGGAGA 59.275 55.000 0.00 0.00 0.00 3.71
76 77 1.082879 AGGGAGATTTCAGGGGGAGAA 59.917 52.381 0.00 0.00 0.00 2.87
77 78 1.923148 GGGAGATTTCAGGGGGAGAAA 59.077 52.381 0.00 0.00 39.11 2.52
78 79 2.515853 GGGAGATTTCAGGGGGAGAAAT 59.484 50.000 0.00 0.00 45.55 2.17
79 80 3.722101 GGGAGATTTCAGGGGGAGAAATA 59.278 47.826 0.00 0.00 43.60 1.40
80 81 4.355287 GGGAGATTTCAGGGGGAGAAATAT 59.645 45.833 0.00 0.00 43.60 1.28
81 82 5.551977 GGGAGATTTCAGGGGGAGAAATATA 59.448 44.000 0.00 0.00 43.60 0.86
82 83 6.477253 GGAGATTTCAGGGGGAGAAATATAC 58.523 44.000 0.00 0.00 43.60 1.47
83 84 6.273495 GGAGATTTCAGGGGGAGAAATATACT 59.727 42.308 0.00 0.00 43.60 2.12
84 85 7.202232 GGAGATTTCAGGGGGAGAAATATACTT 60.202 40.741 0.00 0.00 43.60 2.24
85 86 8.119062 AGATTTCAGGGGGAGAAATATACTTT 57.881 34.615 0.00 0.00 43.60 2.66
86 87 8.221251 AGATTTCAGGGGGAGAAATATACTTTC 58.779 37.037 0.00 0.00 43.60 2.62
87 88 7.525158 TTTCAGGGGGAGAAATATACTTTCT 57.475 36.000 8.84 8.84 41.08 2.52
88 89 7.525158 TTCAGGGGGAGAAATATACTTTCTT 57.475 36.000 9.88 0.00 38.73 2.52
89 90 7.138054 TCAGGGGGAGAAATATACTTTCTTC 57.862 40.000 9.88 8.48 38.73 2.87
94 95 7.834681 GGGGGAGAAATATACTTTCTTCTTTGT 59.165 37.037 12.11 0.00 38.73 2.83
108 109 8.519799 TTTCTTCTTTGTAGTGATGTTTTCCT 57.480 30.769 0.00 0.00 0.00 3.36
110 111 8.154649 TCTTCTTTGTAGTGATGTTTTCCTTC 57.845 34.615 0.00 0.00 0.00 3.46
111 112 7.773224 TCTTCTTTGTAGTGATGTTTTCCTTCA 59.227 33.333 0.00 0.00 0.00 3.02
113 114 7.930217 TCTTTGTAGTGATGTTTTCCTTCAAG 58.070 34.615 0.00 0.00 0.00 3.02
114 115 7.556275 TCTTTGTAGTGATGTTTTCCTTCAAGT 59.444 33.333 0.00 0.00 0.00 3.16
121 122 6.206634 GTGATGTTTTCCTTCAAGTATGGTCA 59.793 38.462 0.00 0.00 0.00 4.02
135 136 6.812879 AGTATGGTCATATGATGCATTGTG 57.187 37.500 9.02 0.00 0.00 3.33
168 169 1.789523 TAAGCCTACTAGCCCAGTGG 58.210 55.000 0.63 0.63 38.24 4.00
195 196 3.286751 TGCACGCCTCAAACCAGC 61.287 61.111 0.00 0.00 0.00 4.85
388 401 3.766691 TCGGCGCAGGTAACCCTC 61.767 66.667 10.83 0.00 39.89 4.30
396 409 0.613853 CAGGTAACCCTCGACTCCCA 60.614 60.000 0.00 0.00 39.89 4.37
458 471 3.007614 TCCAGTTTCGGAACCCTAGAAAG 59.992 47.826 2.02 0.00 36.39 2.62
480 493 2.358247 CGGCCAGTTGTTACGGCT 60.358 61.111 2.24 0.00 41.01 5.52
535 548 1.202758 TGGTCGGCTTGATTTCACAGT 60.203 47.619 0.00 0.00 0.00 3.55
541 554 3.004734 CGGCTTGATTTCACAGTTCCTTT 59.995 43.478 0.00 0.00 0.00 3.11
549 562 1.760613 TCACAGTTCCTTTGTCTCGGT 59.239 47.619 0.00 0.00 0.00 4.69
558 571 4.628074 TCCTTTGTCTCGGTAGTTTTCTG 58.372 43.478 0.00 0.00 0.00 3.02
562 575 1.068055 GTCTCGGTAGTTTTCTGCGGA 60.068 52.381 0.00 0.00 38.87 5.54
568 581 3.596214 GGTAGTTTTCTGCGGATTCAGA 58.404 45.455 0.00 0.00 40.99 3.27
648 661 4.425520 CCCTCAGTTTTTGCGTTTGTTTA 58.574 39.130 0.00 0.00 0.00 2.01
659 672 1.219646 GTTTGTTTACCGCACGAGGA 58.780 50.000 0.00 0.00 34.73 3.71
664 677 0.103572 TTTACCGCACGAGGATAGGC 59.896 55.000 0.00 0.00 34.73 3.93
702 715 5.275788 CGAAATTTCGCGGAGTTCTAGTTAG 60.276 44.000 26.01 0.00 44.26 2.34
712 725 4.338964 GGAGTTCTAGTTAGGGCTGTAGTC 59.661 50.000 0.00 0.00 0.00 2.59
727 740 4.092968 GCTGTAGTCGAATTGGTGTTAAGG 59.907 45.833 0.00 0.00 0.00 2.69
734 747 3.353557 GAATTGGTGTTAAGGGGACTCC 58.646 50.000 0.00 0.00 42.68 3.85
762 775 2.609427 TCAGATTTCAGATCTGGGCG 57.391 50.000 22.42 6.09 44.15 6.13
764 777 2.237143 TCAGATTTCAGATCTGGGCGTT 59.763 45.455 22.42 3.74 44.15 4.84
774 787 2.325583 TCTGGGCGTTGGATATTGTC 57.674 50.000 0.00 0.00 0.00 3.18
777 790 1.275657 GGCGTTGGATATTGTCGCG 59.724 57.895 0.00 0.00 46.30 5.87
782 796 2.536130 CGTTGGATATTGTCGCGGTTTC 60.536 50.000 6.13 0.00 0.00 2.78
791 805 0.179156 GTCGCGGTTTCGTCTGGATA 60.179 55.000 6.13 0.00 38.89 2.59
792 806 0.099968 TCGCGGTTTCGTCTGGATAG 59.900 55.000 6.13 0.00 38.89 2.08
798 812 4.189231 CGGTTTCGTCTGGATAGGAATTT 58.811 43.478 0.00 0.00 0.00 1.82
799 813 4.634443 CGGTTTCGTCTGGATAGGAATTTT 59.366 41.667 0.00 0.00 0.00 1.82
800 814 5.220605 CGGTTTCGTCTGGATAGGAATTTTC 60.221 44.000 0.00 0.00 0.00 2.29
801 815 5.880887 GGTTTCGTCTGGATAGGAATTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
803 817 7.094334 GGTTTCGTCTGGATAGGAATTTTCTTT 60.094 37.037 0.00 0.00 0.00 2.52
804 818 7.611213 TTCGTCTGGATAGGAATTTTCTTTC 57.389 36.000 0.00 0.00 0.00 2.62
818 832 7.696872 GGAATTTTCTTTCCTATAAACGACTGC 59.303 37.037 0.00 0.00 41.69 4.40
823 837 3.965292 TCCTATAAACGACTGCTCTCG 57.035 47.619 0.00 2.50 39.68 4.04
824 838 2.033049 TCCTATAAACGACTGCTCTCGC 59.967 50.000 0.00 0.00 37.15 5.03
833 848 3.128938 ACGACTGCTCTCGCTAAATAGTT 59.871 43.478 0.00 0.00 37.15 2.24
837 852 2.764010 TGCTCTCGCTAAATAGTTGGGA 59.236 45.455 0.00 0.00 36.97 4.37
846 861 6.071616 TCGCTAAATAGTTGGGAAATTTGCTT 60.072 34.615 9.70 0.00 0.00 3.91
848 863 6.183360 GCTAAATAGTTGGGAAATTTGCTTGC 60.183 38.462 9.70 0.50 0.00 4.01
851 866 4.525912 AGTTGGGAAATTTGCTTGCTAG 57.474 40.909 9.70 0.00 0.00 3.42
858 873 4.082245 GGAAATTTGCTTGCTAGGCTTACA 60.082 41.667 1.93 0.00 0.00 2.41
860 875 6.183360 GGAAATTTGCTTGCTAGGCTTACATA 60.183 38.462 1.93 0.00 0.00 2.29
861 876 5.757850 ATTTGCTTGCTAGGCTTACATAC 57.242 39.130 0.00 0.00 0.00 2.39
862 877 3.904800 TGCTTGCTAGGCTTACATACA 57.095 42.857 0.00 0.00 0.00 2.29
863 878 3.531538 TGCTTGCTAGGCTTACATACAC 58.468 45.455 0.00 0.00 0.00 2.90
867 882 4.123497 TGCTAGGCTTACATACACTGTG 57.877 45.455 6.19 6.19 38.92 3.66
869 884 4.405680 TGCTAGGCTTACATACACTGTGAT 59.594 41.667 15.86 0.90 38.92 3.06
871 886 5.921408 GCTAGGCTTACATACACTGTGATAC 59.079 44.000 15.86 0.00 38.92 2.24
887 902 4.045104 GTGATACGCAGTTGGTGATCTAG 58.955 47.826 0.00 0.00 37.78 2.43
897 912 6.920758 GCAGTTGGTGATCTAGAAGTGTATAG 59.079 42.308 0.00 0.00 0.00 1.31
938 953 4.065321 GCAGTGTTGCTCATATACCTCT 57.935 45.455 0.00 0.00 46.95 3.69
941 956 3.389329 AGTGTTGCTCATATACCTCTGGG 59.611 47.826 0.00 0.00 38.88 4.45
942 957 3.388024 GTGTTGCTCATATACCTCTGGGA 59.612 47.826 0.00 0.00 36.25 4.37
967 982 5.990668 AGGTGTCCTCATTATAACTGGTTC 58.009 41.667 0.00 0.00 0.00 3.62
1014 1029 2.045340 ACCATGGCCCGCTTGTAC 60.045 61.111 13.04 0.00 0.00 2.90
1020 1035 2.667199 GCCCGCTTGTACGTTGGT 60.667 61.111 0.00 0.00 0.00 3.67
1059 1074 1.707427 ACTGCTGGGGAACTTGAAGAT 59.293 47.619 0.00 0.00 0.00 2.40
1092 1113 0.941542 TTGGAGTTTTGCGAAGGTCG 59.058 50.000 0.00 0.00 43.89 4.79
1093 1114 0.882927 TGGAGTTTTGCGAAGGTCGG 60.883 55.000 0.00 0.00 40.84 4.79
1094 1115 0.883370 GGAGTTTTGCGAAGGTCGGT 60.883 55.000 0.00 0.00 40.84 4.69
1095 1116 0.942252 GAGTTTTGCGAAGGTCGGTT 59.058 50.000 0.00 0.00 40.84 4.44
1096 1117 1.332686 GAGTTTTGCGAAGGTCGGTTT 59.667 47.619 0.00 0.00 40.84 3.27
1097 1118 1.332686 AGTTTTGCGAAGGTCGGTTTC 59.667 47.619 0.00 0.00 40.84 2.78
1104 1125 2.481185 GCGAAGGTCGGTTTCATTACAA 59.519 45.455 0.00 0.00 40.84 2.41
1171 1192 7.855409 TGCGTGAATTCATTTATTGTATACTGC 59.145 33.333 12.12 3.51 0.00 4.40
1205 1286 3.355378 TGCATGCCAGTGCTTATAAAGT 58.645 40.909 16.68 0.00 45.27 2.66
1212 1293 5.106197 TGCCAGTGCTTATAAAGTGATGTTG 60.106 40.000 0.00 0.00 38.71 3.33
1213 1294 5.677091 GCCAGTGCTTATAAAGTGATGTTGG 60.677 44.000 0.00 0.00 33.53 3.77
1214 1295 5.647658 CCAGTGCTTATAAAGTGATGTTGGA 59.352 40.000 0.00 0.00 0.00 3.53
1215 1296 6.319658 CCAGTGCTTATAAAGTGATGTTGGAT 59.680 38.462 0.00 0.00 0.00 3.41
1216 1297 7.412853 CAGTGCTTATAAAGTGATGTTGGATC 58.587 38.462 0.00 0.00 0.00 3.36
1217 1298 7.281774 CAGTGCTTATAAAGTGATGTTGGATCT 59.718 37.037 0.00 0.00 0.00 2.75
1218 1299 7.831193 AGTGCTTATAAAGTGATGTTGGATCTT 59.169 33.333 0.00 0.00 0.00 2.40
1219 1300 8.462016 GTGCTTATAAAGTGATGTTGGATCTTT 58.538 33.333 0.00 0.00 33.76 2.52
1220 1301 8.461222 TGCTTATAAAGTGATGTTGGATCTTTG 58.539 33.333 0.00 0.00 32.01 2.77
1221 1302 8.677300 GCTTATAAAGTGATGTTGGATCTTTGA 58.323 33.333 0.00 0.00 32.01 2.69
1224 1305 5.382618 AAGTGATGTTGGATCTTTGAAGC 57.617 39.130 0.00 0.00 0.00 3.86
1225 1306 4.401022 AGTGATGTTGGATCTTTGAAGCA 58.599 39.130 0.00 0.00 0.00 3.91
1226 1307 4.828939 AGTGATGTTGGATCTTTGAAGCAA 59.171 37.500 0.00 0.00 0.00 3.91
1227 1308 5.302568 AGTGATGTTGGATCTTTGAAGCAAA 59.697 36.000 0.00 0.00 0.00 3.68
1228 1309 5.984926 GTGATGTTGGATCTTTGAAGCAAAA 59.015 36.000 0.00 0.00 32.75 2.44
1229 1310 6.647895 GTGATGTTGGATCTTTGAAGCAAAAT 59.352 34.615 0.00 0.00 32.75 1.82
1230 1311 6.647481 TGATGTTGGATCTTTGAAGCAAAATG 59.353 34.615 0.00 0.00 32.75 2.32
1231 1312 6.159299 TGTTGGATCTTTGAAGCAAAATGA 57.841 33.333 0.00 0.00 32.75 2.57
1232 1313 6.761312 TGTTGGATCTTTGAAGCAAAATGAT 58.239 32.000 0.00 0.00 32.75 2.45
1233 1314 7.894708 TGTTGGATCTTTGAAGCAAAATGATA 58.105 30.769 0.00 0.00 32.75 2.15
1234 1315 8.366401 TGTTGGATCTTTGAAGCAAAATGATAA 58.634 29.630 0.00 0.00 32.75 1.75
1235 1316 9.374838 GTTGGATCTTTGAAGCAAAATGATAAT 57.625 29.630 0.00 0.00 32.75 1.28
1236 1317 9.947433 TTGGATCTTTGAAGCAAAATGATAATT 57.053 25.926 0.00 0.00 32.75 1.40
1245 1326 9.695526 TGAAGCAAAATGATAATTATGTATGCC 57.304 29.630 1.78 0.00 0.00 4.40
1246 1327 9.695526 GAAGCAAAATGATAATTATGTATGCCA 57.304 29.630 1.78 0.00 0.00 4.92
1247 1328 9.701098 AAGCAAAATGATAATTATGTATGCCAG 57.299 29.630 1.78 0.00 0.00 4.85
1248 1329 7.816031 AGCAAAATGATAATTATGTATGCCAGC 59.184 33.333 1.78 0.00 0.00 4.85
1249 1330 7.201376 GCAAAATGATAATTATGTATGCCAGCG 60.201 37.037 1.78 0.00 0.00 5.18
1250 1331 7.686438 AAATGATAATTATGTATGCCAGCGA 57.314 32.000 1.78 0.00 0.00 4.93
1251 1332 7.870509 AATGATAATTATGTATGCCAGCGAT 57.129 32.000 1.78 0.00 0.00 4.58
1252 1333 7.870509 ATGATAATTATGTATGCCAGCGATT 57.129 32.000 1.78 0.00 0.00 3.34
1253 1334 8.962884 ATGATAATTATGTATGCCAGCGATTA 57.037 30.769 1.78 0.00 0.00 1.75
1254 1335 8.962884 TGATAATTATGTATGCCAGCGATTAT 57.037 30.769 1.78 0.00 0.00 1.28
1255 1336 8.829612 TGATAATTATGTATGCCAGCGATTATG 58.170 33.333 1.78 0.00 0.00 1.90
1256 1337 4.944962 TTATGTATGCCAGCGATTATGC 57.055 40.909 0.00 0.00 0.00 3.14
1258 1339 2.849942 TGTATGCCAGCGATTATGCTT 58.150 42.857 0.00 0.00 44.46 3.91
1259 1340 4.001618 TGTATGCCAGCGATTATGCTTA 57.998 40.909 0.00 0.00 44.46 3.09
1260 1341 4.578871 TGTATGCCAGCGATTATGCTTAT 58.421 39.130 0.00 0.00 44.46 1.73
1261 1342 5.729510 TGTATGCCAGCGATTATGCTTATA 58.270 37.500 0.00 0.00 44.46 0.98
1262 1343 6.169800 TGTATGCCAGCGATTATGCTTATAA 58.830 36.000 0.00 0.00 44.46 0.98
1263 1344 6.652900 TGTATGCCAGCGATTATGCTTATAAA 59.347 34.615 0.00 0.00 44.46 1.40
1264 1345 5.611796 TGCCAGCGATTATGCTTATAAAG 57.388 39.130 0.00 0.00 44.46 1.85
1265 1346 4.455533 TGCCAGCGATTATGCTTATAAAGG 59.544 41.667 0.00 0.00 44.46 3.11
1266 1347 4.142600 GCCAGCGATTATGCTTATAAAGGG 60.143 45.833 0.00 0.00 44.46 3.95
1267 1348 5.245531 CCAGCGATTATGCTTATAAAGGGA 58.754 41.667 0.00 0.00 44.46 4.20
1268 1349 5.882557 CCAGCGATTATGCTTATAAAGGGAT 59.117 40.000 0.00 0.00 44.46 3.85
1269 1350 6.183360 CCAGCGATTATGCTTATAAAGGGATG 60.183 42.308 0.00 0.00 44.46 3.51
1270 1351 5.355350 AGCGATTATGCTTATAAAGGGATGC 59.645 40.000 0.00 0.00 44.46 3.91
1271 1352 5.355350 GCGATTATGCTTATAAAGGGATGCT 59.645 40.000 0.00 0.00 0.00 3.79
1476 1587 6.458232 TGCTTAAGAACTCCTATCTCTGAC 57.542 41.667 6.67 0.00 0.00 3.51
1529 1640 1.812922 CCACCGAGACATGCTGCTC 60.813 63.158 0.00 0.00 0.00 4.26
1537 1648 3.545624 CGAGACATGCTGCTCATTTAAGC 60.546 47.826 0.00 0.00 42.82 3.09
1540 1651 2.489329 ACATGCTGCTCATTTAAGCGTT 59.511 40.909 0.00 0.00 45.54 4.84
1554 1665 6.385649 TTTAAGCGTTTCTGAACCTTGAAT 57.614 33.333 0.00 0.00 32.36 2.57
1562 1673 6.291796 CGTTTCTGAACCTTGAATGCTTTTTC 60.292 38.462 0.00 0.00 31.93 2.29
1585 1696 4.381932 CCCTTCAAAATGGTATGGTTCAGC 60.382 45.833 0.00 0.00 0.00 4.26
1589 1700 5.565509 TCAAAATGGTATGGTTCAGCACTA 58.434 37.500 0.00 0.00 0.00 2.74
1590 1701 6.007076 TCAAAATGGTATGGTTCAGCACTAA 58.993 36.000 0.00 0.00 0.00 2.24
1609 1720 6.038714 GCACTAAATATCTTTTGAGGTGGAGG 59.961 42.308 0.00 0.00 0.00 4.30
1682 1794 6.480763 TCAATGGCTTGGTGTAGATTAAGAA 58.519 36.000 0.00 0.00 32.95 2.52
1714 1826 1.538512 CTTGGCATGTTGGACTGACTG 59.461 52.381 0.00 0.00 0.00 3.51
1769 1881 2.547007 GCCACCTGGTTTTGCGTTTATT 60.547 45.455 0.00 0.00 37.57 1.40
1778 1890 6.938542 TGGTTTTGCGTTTATTGATTTTGAC 58.061 32.000 0.00 0.00 0.00 3.18
1825 1937 5.403766 CACTTCGTGATCTAGATGGTAATGC 59.596 44.000 10.74 0.00 35.23 3.56
1855 1967 3.152341 CTCTTGTGGAGGCTTGTTTGAT 58.848 45.455 0.00 0.00 38.35 2.57
1874 1986 2.107950 TTCTTGGGCAGGACATTACG 57.892 50.000 0.00 0.00 0.00 3.18
1922 2042 6.592220 TGATTTTCATGGCAAATGTCTGATTG 59.408 34.615 8.12 0.00 0.00 2.67
1993 2114 3.062042 GGAAGCAAGCTTTCAATGGTTG 58.938 45.455 8.91 10.15 43.31 3.77
2047 2199 5.723672 TTATACACATCCTAGCCACTAGC 57.276 43.478 0.00 0.00 44.25 3.42
2104 2256 5.063817 GCTTTTTCAGATGCACACTTTGTTT 59.936 36.000 0.00 0.00 0.00 2.83
2118 2270 5.593909 ACACTTTGTTTTCTCATCCATGACA 59.406 36.000 0.00 0.00 32.50 3.58
2133 2290 8.146412 TCATCCATGACAGTAGATTGTAATCTG 58.854 37.037 15.51 4.56 45.01 2.90
2299 2459 1.474077 GAATGTGGTGAATCTGGGCAC 59.526 52.381 0.00 0.00 0.00 5.01
2428 2589 3.198872 GAGCTATGGCAGAAGGTAACAC 58.801 50.000 3.10 0.00 41.70 3.32
2490 2652 5.842907 AGGTTAGCTTTGTTGTTCATTTCC 58.157 37.500 0.00 0.00 0.00 3.13
2494 2656 4.122046 AGCTTTGTTGTTCATTTCCTTGC 58.878 39.130 0.00 0.00 0.00 4.01
2508 2677 7.761409 TCATTTCCTTGCATACTGTTTATGTC 58.239 34.615 0.00 0.00 0.00 3.06
2531 2701 7.768120 TGTCAAAAATGGTTGCTTGTTCTTTAT 59.232 29.630 0.00 0.00 0.00 1.40
2532 2702 9.255304 GTCAAAAATGGTTGCTTGTTCTTTATA 57.745 29.630 0.00 0.00 0.00 0.98
2540 2710 8.349983 TGGTTGCTTGTTCTTTATAAGTTCTTC 58.650 33.333 0.00 0.00 0.00 2.87
2569 2739 2.115910 TCAAGCTTGGGTGCCTGG 59.884 61.111 25.73 0.00 0.00 4.45
2571 2741 2.116125 AAGCTTGGGTGCCTGGTC 59.884 61.111 0.00 0.00 0.00 4.02
2594 2766 9.710979 GGTCTTTTACTTTTTGTTATTTTTGGC 57.289 29.630 0.00 0.00 0.00 4.52
2603 2777 8.600449 TTTTTGTTATTTTTGGCTATGTGAGG 57.400 30.769 0.00 0.00 0.00 3.86
2809 2983 5.772393 TTCTCCTGATGCTAAAGGGTAAA 57.228 39.130 0.00 0.00 34.08 2.01
2848 3049 8.793592 GGAAATATCACCTAATTATTGTGTCCC 58.206 37.037 12.45 5.59 0.00 4.46
2850 3051 9.707957 AAATATCACCTAATTATTGTGTCCCAA 57.292 29.630 12.45 0.00 37.49 4.12
2907 3108 0.175989 CGGAGTTAGACCTGAAGCCC 59.824 60.000 0.00 0.00 0.00 5.19
2914 3115 2.847234 ACCTGAAGCCCGTGTCCA 60.847 61.111 0.00 0.00 0.00 4.02
3073 3285 3.200605 TGGATGTGGTATGCAACTGAGAT 59.799 43.478 0.00 0.00 0.00 2.75
3143 3355 2.548480 GCTTAAACGACTCAGCCAACTT 59.452 45.455 0.00 0.00 0.00 2.66
3174 3386 4.095610 CAGTTGTTGTCTTCGTGGTTTTC 58.904 43.478 0.00 0.00 0.00 2.29
3251 3463 2.110627 GCCTGCGATGCCTCTGAT 59.889 61.111 0.00 0.00 0.00 2.90
3351 3563 4.822896 TGCAACTTGTTAAAGTAACCGGAT 59.177 37.500 9.46 0.00 46.15 4.18
3354 3566 6.368213 CAACTTGTTAAAGTAACCGGATCAC 58.632 40.000 9.46 2.05 46.15 3.06
3357 3569 5.471556 TGTTAAAGTAACCGGATCACTGA 57.528 39.130 9.46 0.00 37.88 3.41
3371 3583 8.647796 ACCGGATCACTGATTTTGTATATAGAA 58.352 33.333 9.46 0.00 0.00 2.10
3382 3594 9.482627 GATTTTGTATATAGAACCAGGAGTCAG 57.517 37.037 0.00 0.00 0.00 3.51
3406 3618 0.721718 GTATTGACCGTGCAGCACTC 59.278 55.000 23.15 15.03 31.34 3.51
3440 3652 6.831664 AAATCTACATCCTGTTCATAGGGT 57.168 37.500 0.00 0.00 38.42 4.34
3505 3717 0.960364 TTTGATGAGGCCGGCTTCAC 60.960 55.000 39.65 30.68 34.91 3.18
3515 3727 3.377656 GGCTTCACCGAGAGTCCA 58.622 61.111 0.00 0.00 0.00 4.02
3517 3729 1.536943 GGCTTCACCGAGAGTCCACT 61.537 60.000 0.00 0.00 0.00 4.00
3518 3730 0.318762 GCTTCACCGAGAGTCCACTT 59.681 55.000 0.00 0.00 0.00 3.16
3519 3731 1.544691 GCTTCACCGAGAGTCCACTTA 59.455 52.381 0.00 0.00 0.00 2.24
3543 3757 5.757850 AACAGTTTTGTGGACTTCATCTC 57.242 39.130 0.00 0.00 37.67 2.75
3549 3763 1.347707 TGTGGACTTCATCTCGGCTTT 59.652 47.619 0.00 0.00 0.00 3.51
3551 3765 3.197766 TGTGGACTTCATCTCGGCTTTAT 59.802 43.478 0.00 0.00 0.00 1.40
3552 3766 4.192317 GTGGACTTCATCTCGGCTTTATT 58.808 43.478 0.00 0.00 0.00 1.40
3553 3767 4.271291 GTGGACTTCATCTCGGCTTTATTC 59.729 45.833 0.00 0.00 0.00 1.75
3554 3768 4.162320 TGGACTTCATCTCGGCTTTATTCT 59.838 41.667 0.00 0.00 0.00 2.40
3555 3769 4.747605 GGACTTCATCTCGGCTTTATTCTC 59.252 45.833 0.00 0.00 0.00 2.87
3556 3770 4.363999 ACTTCATCTCGGCTTTATTCTCG 58.636 43.478 0.00 0.00 0.00 4.04
3557 3771 3.371102 TCATCTCGGCTTTATTCTCGG 57.629 47.619 0.00 0.00 0.00 4.63
3558 3772 1.795286 CATCTCGGCTTTATTCTCGGC 59.205 52.381 0.00 0.00 0.00 5.54
3559 3773 1.112113 TCTCGGCTTTATTCTCGGCT 58.888 50.000 0.00 0.00 0.00 5.52
3560 3774 1.480954 TCTCGGCTTTATTCTCGGCTT 59.519 47.619 0.00 0.00 0.00 4.35
3561 3775 1.861575 CTCGGCTTTATTCTCGGCTTC 59.138 52.381 0.00 0.00 0.00 3.86
3562 3776 1.206132 TCGGCTTTATTCTCGGCTTCA 59.794 47.619 0.00 0.00 0.00 3.02
3563 3777 1.594862 CGGCTTTATTCTCGGCTTCAG 59.405 52.381 0.00 0.00 0.00 3.02
3584 3798 5.582269 TCAGCGAGAGTCAATCCATTTAAAG 59.418 40.000 0.00 0.00 0.00 1.85
3589 3803 7.459486 CGAGAGTCAATCCATTTAAAGAGTTG 58.541 38.462 0.00 0.00 0.00 3.16
3603 3817 0.716108 GAGTTGTGCGGACTTCATCG 59.284 55.000 8.99 0.00 0.00 3.84
3604 3818 0.670546 AGTTGTGCGGACTTCATCGG 60.671 55.000 8.99 0.00 0.00 4.18
3612 3826 3.861569 CGGACTTCATCGGCTTTATTC 57.138 47.619 0.00 0.00 0.00 1.75
3613 3827 3.458189 CGGACTTCATCGGCTTTATTCT 58.542 45.455 0.00 0.00 0.00 2.40
3614 3828 3.491267 CGGACTTCATCGGCTTTATTCTC 59.509 47.826 0.00 0.00 0.00 2.87
3615 3829 3.491267 GGACTTCATCGGCTTTATTCTCG 59.509 47.826 0.00 0.00 0.00 4.04
3624 3838 3.607775 CGGCTTTATTCTCGGCATTCATG 60.608 47.826 0.00 0.00 0.00 3.07
3639 3853 1.432514 TCATGTTCTTCGCAGTCTGC 58.567 50.000 15.22 15.22 40.69 4.26
3643 3857 2.610433 TGTTCTTCGCAGTCTGCATAG 58.390 47.619 24.13 18.62 45.36 2.23
3644 3858 2.029020 TGTTCTTCGCAGTCTGCATAGT 60.029 45.455 24.13 0.00 45.36 2.12
3645 3859 2.568696 TCTTCGCAGTCTGCATAGTC 57.431 50.000 24.13 0.00 45.36 2.59
3646 3860 2.095461 TCTTCGCAGTCTGCATAGTCT 58.905 47.619 24.13 0.00 45.36 3.24
3647 3861 2.159324 TCTTCGCAGTCTGCATAGTCTG 60.159 50.000 24.13 6.48 45.36 3.51
3686 3905 0.035881 ACTGCACTGCACTGCATAGT 59.964 50.000 19.38 12.88 46.05 2.12
3690 3909 1.673923 GCACTGCACTGCATAGTCTCA 60.674 52.381 12.77 0.00 38.13 3.27
3709 3928 3.930336 TCAACTTCATCTTCATCTGCGT 58.070 40.909 0.00 0.00 0.00 5.24
3725 3944 4.002982 TCTGCGTGCTTCATTTGTTATCT 58.997 39.130 0.00 0.00 0.00 1.98
3733 3952 6.855914 GTGCTTCATTTGTTATCTTCGACAAA 59.144 34.615 4.39 4.39 46.21 2.83
3734 3953 7.378461 GTGCTTCATTTGTTATCTTCGACAAAA 59.622 33.333 5.85 0.00 45.55 2.44
3735 3954 7.378461 TGCTTCATTTGTTATCTTCGACAAAAC 59.622 33.333 5.85 0.00 45.55 2.43
3736 3955 7.408290 GCTTCATTTGTTATCTTCGACAAAACG 60.408 37.037 5.85 0.00 45.55 3.60
3737 3956 7.179927 TCATTTGTTATCTTCGACAAAACGA 57.820 32.000 5.85 0.00 45.55 3.85
3738 3957 7.287950 TCATTTGTTATCTTCGACAAAACGAG 58.712 34.615 5.85 0.00 45.55 4.18
3739 3958 6.592798 TTTGTTATCTTCGACAAAACGAGT 57.407 33.333 0.00 0.00 41.33 4.18
3740 3959 7.697352 TTTGTTATCTTCGACAAAACGAGTA 57.303 32.000 0.00 0.00 41.33 2.59
3741 3960 7.878477 TTGTTATCTTCGACAAAACGAGTAT 57.122 32.000 0.00 0.00 43.04 2.12
3742 3961 8.969121 TTGTTATCTTCGACAAAACGAGTATA 57.031 30.769 0.00 0.00 43.04 1.47
3743 3962 9.577110 TTGTTATCTTCGACAAAACGAGTATAT 57.423 29.630 0.00 0.00 43.04 0.86
3744 3963 9.577110 TGTTATCTTCGACAAAACGAGTATATT 57.423 29.630 0.00 0.00 43.04 1.28
3747 3966 8.928270 ATCTTCGACAAAACGAGTATATTTCT 57.072 30.769 0.00 0.00 43.04 2.52
3748 3967 8.169839 TCTTCGACAAAACGAGTATATTTCTG 57.830 34.615 0.00 0.00 43.04 3.02
3749 3968 6.327177 TCGACAAAACGAGTATATTTCTGC 57.673 37.500 0.00 0.00 37.37 4.26
3750 3969 5.290158 TCGACAAAACGAGTATATTTCTGCC 59.710 40.000 0.00 0.00 37.37 4.85
3751 3970 5.291128 CGACAAAACGAGTATATTTCTGCCT 59.709 40.000 0.00 0.00 35.09 4.75
3752 3971 6.422776 ACAAAACGAGTATATTTCTGCCTG 57.577 37.500 0.00 0.00 0.00 4.85
3753 3972 5.163754 ACAAAACGAGTATATTTCTGCCTGC 60.164 40.000 0.00 0.00 0.00 4.85
3754 3973 4.408182 AACGAGTATATTTCTGCCTGCT 57.592 40.909 0.00 0.00 0.00 4.24
3755 3974 3.722147 ACGAGTATATTTCTGCCTGCTG 58.278 45.455 0.00 0.00 0.00 4.41
3756 3975 2.478134 CGAGTATATTTCTGCCTGCTGC 59.522 50.000 0.00 0.00 41.77 5.25
3814 4061 0.248843 GCCTGCACTGCTTAGTCTCT 59.751 55.000 1.98 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.198207 CGGATAAATAACCCCCTGAACTTT 58.802 41.667 0.00 0.00 0.00 2.66
1 2 4.385977 CCGGATAAATAACCCCCTGAACTT 60.386 45.833 0.00 0.00 0.00 2.66
2 3 3.137728 CCGGATAAATAACCCCCTGAACT 59.862 47.826 0.00 0.00 0.00 3.01
3 4 3.117776 ACCGGATAAATAACCCCCTGAAC 60.118 47.826 9.46 0.00 0.00 3.18
4 5 3.124861 ACCGGATAAATAACCCCCTGAA 58.875 45.455 9.46 0.00 0.00 3.02
5 6 2.779163 ACCGGATAAATAACCCCCTGA 58.221 47.619 9.46 0.00 0.00 3.86
6 7 3.588210 AACCGGATAAATAACCCCCTG 57.412 47.619 9.46 0.00 0.00 4.45
7 8 3.434024 CGAAACCGGATAAATAACCCCCT 60.434 47.826 9.46 0.00 0.00 4.79
8 9 2.880268 CGAAACCGGATAAATAACCCCC 59.120 50.000 9.46 0.00 0.00 5.40
22 23 1.375523 CCCCTGAACTCCGAAACCG 60.376 63.158 0.00 0.00 0.00 4.44
23 24 1.002502 CCCCCTGAACTCCGAAACC 60.003 63.158 0.00 0.00 0.00 3.27
24 25 4.716003 CCCCCTGAACTCCGAAAC 57.284 61.111 0.00 0.00 0.00 2.78
42 43 3.652057 TCTCCCTTGATGGACCAAATC 57.348 47.619 0.00 0.00 38.35 2.17
43 44 4.614967 AATCTCCCTTGATGGACCAAAT 57.385 40.909 0.00 0.00 38.35 2.32
44 45 4.202663 TGAAATCTCCCTTGATGGACCAAA 60.203 41.667 0.00 0.00 38.35 3.28
45 46 3.333381 TGAAATCTCCCTTGATGGACCAA 59.667 43.478 0.00 0.00 38.35 3.67
46 47 2.918934 TGAAATCTCCCTTGATGGACCA 59.081 45.455 0.00 0.00 38.35 4.02
47 48 3.549794 CTGAAATCTCCCTTGATGGACC 58.450 50.000 0.00 0.00 38.35 4.46
48 49 3.549794 CCTGAAATCTCCCTTGATGGAC 58.450 50.000 0.00 0.00 38.35 4.02
49 50 2.511218 CCCTGAAATCTCCCTTGATGGA 59.489 50.000 0.00 0.00 38.35 3.41
50 51 2.423947 CCCCTGAAATCTCCCTTGATGG 60.424 54.545 0.00 0.00 0.00 3.51
51 52 2.423947 CCCCCTGAAATCTCCCTTGATG 60.424 54.545 0.00 0.00 0.00 3.07
52 53 1.855599 CCCCCTGAAATCTCCCTTGAT 59.144 52.381 0.00 0.00 0.00 2.57
53 54 1.203557 TCCCCCTGAAATCTCCCTTGA 60.204 52.381 0.00 0.00 0.00 3.02
54 55 1.213926 CTCCCCCTGAAATCTCCCTTG 59.786 57.143 0.00 0.00 0.00 3.61
55 56 1.082879 TCTCCCCCTGAAATCTCCCTT 59.917 52.381 0.00 0.00 0.00 3.95
56 57 0.725133 TCTCCCCCTGAAATCTCCCT 59.275 55.000 0.00 0.00 0.00 4.20
57 58 1.596496 TTCTCCCCCTGAAATCTCCC 58.404 55.000 0.00 0.00 0.00 4.30
58 59 3.961484 ATTTCTCCCCCTGAAATCTCC 57.039 47.619 0.00 0.00 39.15 3.71
59 60 7.323052 AGTATATTTCTCCCCCTGAAATCTC 57.677 40.000 5.18 0.00 41.49 2.75
60 61 7.713704 AAGTATATTTCTCCCCCTGAAATCT 57.286 36.000 5.18 0.14 41.49 2.40
61 62 8.221251 AGAAAGTATATTTCTCCCCCTGAAATC 58.779 37.037 5.18 0.00 41.49 2.17
62 63 8.119062 AGAAAGTATATTTCTCCCCCTGAAAT 57.881 34.615 6.87 6.87 43.74 2.17
63 64 7.525158 AGAAAGTATATTTCTCCCCCTGAAA 57.475 36.000 0.00 0.00 33.86 2.69
64 65 7.406151 AGAAGAAAGTATATTTCTCCCCCTGAA 59.594 37.037 3.52 0.00 37.75 3.02
65 66 6.909158 AGAAGAAAGTATATTTCTCCCCCTGA 59.091 38.462 3.52 0.00 37.75 3.86
66 67 7.142995 AGAAGAAAGTATATTTCTCCCCCTG 57.857 40.000 3.52 0.00 37.75 4.45
67 68 7.773099 AAGAAGAAAGTATATTTCTCCCCCT 57.227 36.000 3.52 0.00 37.75 4.79
68 69 7.834681 ACAAAGAAGAAAGTATATTTCTCCCCC 59.165 37.037 3.52 0.00 37.75 5.40
69 70 8.809468 ACAAAGAAGAAAGTATATTTCTCCCC 57.191 34.615 3.52 0.00 37.75 4.81
81 82 8.406297 GGAAAACATCACTACAAAGAAGAAAGT 58.594 33.333 0.00 0.00 0.00 2.66
82 83 8.624776 AGGAAAACATCACTACAAAGAAGAAAG 58.375 33.333 0.00 0.00 0.00 2.62
83 84 8.519799 AGGAAAACATCACTACAAAGAAGAAA 57.480 30.769 0.00 0.00 0.00 2.52
84 85 8.519799 AAGGAAAACATCACTACAAAGAAGAA 57.480 30.769 0.00 0.00 0.00 2.52
85 86 7.773224 TGAAGGAAAACATCACTACAAAGAAGA 59.227 33.333 0.00 0.00 0.00 2.87
86 87 7.930217 TGAAGGAAAACATCACTACAAAGAAG 58.070 34.615 0.00 0.00 0.00 2.85
87 88 7.873719 TGAAGGAAAACATCACTACAAAGAA 57.126 32.000 0.00 0.00 0.00 2.52
88 89 7.556275 ACTTGAAGGAAAACATCACTACAAAGA 59.444 33.333 0.00 0.00 0.00 2.52
89 90 7.707104 ACTTGAAGGAAAACATCACTACAAAG 58.293 34.615 0.00 0.00 0.00 2.77
94 95 7.458397 ACCATACTTGAAGGAAAACATCACTA 58.542 34.615 0.00 0.00 0.00 2.74
102 103 9.123902 CATCATATGACCATACTTGAAGGAAAA 57.876 33.333 7.78 0.00 0.00 2.29
108 109 7.503230 ACAATGCATCATATGACCATACTTGAA 59.497 33.333 7.78 0.00 0.00 2.69
110 111 7.081976 CACAATGCATCATATGACCATACTTG 58.918 38.462 7.78 11.57 0.00 3.16
111 112 6.294342 GCACAATGCATCATATGACCATACTT 60.294 38.462 7.78 0.00 44.26 2.24
113 114 5.396484 GCACAATGCATCATATGACCATAC 58.604 41.667 7.78 0.00 44.26 2.39
114 115 5.632244 GCACAATGCATCATATGACCATA 57.368 39.130 7.78 0.00 44.26 2.74
135 136 1.517361 GCTTATTGGGTTGGGCTGC 59.483 57.895 0.00 0.00 0.00 5.25
185 186 1.901591 ATGTGTGGAGCTGGTTTGAG 58.098 50.000 0.00 0.00 0.00 3.02
188 189 2.357154 GGGATATGTGTGGAGCTGGTTT 60.357 50.000 0.00 0.00 0.00 3.27
189 190 1.212935 GGGATATGTGTGGAGCTGGTT 59.787 52.381 0.00 0.00 0.00 3.67
195 196 4.771114 TTTGTAGGGGATATGTGTGGAG 57.229 45.455 0.00 0.00 0.00 3.86
480 493 2.506217 GAACATCGCGACGAGGCA 60.506 61.111 12.93 0.00 41.46 4.75
535 548 5.054477 CAGAAAACTACCGAGACAAAGGAA 58.946 41.667 0.00 0.00 0.00 3.36
541 554 1.336517 CCGCAGAAAACTACCGAGACA 60.337 52.381 0.00 0.00 0.00 3.41
549 562 3.007506 TGGTCTGAATCCGCAGAAAACTA 59.992 43.478 0.00 0.00 45.69 2.24
558 571 1.943340 GAGGAATTGGTCTGAATCCGC 59.057 52.381 0.00 0.00 0.00 5.54
562 575 2.196595 TCGGGAGGAATTGGTCTGAAT 58.803 47.619 0.00 0.00 0.00 2.57
568 581 3.903208 CCAATCGGGAGGAATTGGT 57.097 52.632 6.05 0.00 40.01 3.67
624 637 1.136110 CAAACGCAAAAACTGAGGGGT 59.864 47.619 0.00 0.00 0.00 4.95
648 661 2.758327 TGCCTATCCTCGTGCGGT 60.758 61.111 0.00 0.00 0.00 5.68
659 672 3.676093 TCGACATCGAGATACTGCCTAT 58.324 45.455 0.00 0.00 44.22 2.57
683 696 2.165030 CCCTAACTAGAACTCCGCGAAA 59.835 50.000 8.23 0.00 0.00 3.46
688 701 2.100989 ACAGCCCTAACTAGAACTCCG 58.899 52.381 0.00 0.00 0.00 4.63
695 708 5.282510 CAATTCGACTACAGCCCTAACTAG 58.717 45.833 0.00 0.00 0.00 2.57
702 715 1.338769 ACACCAATTCGACTACAGCCC 60.339 52.381 0.00 0.00 0.00 5.19
712 725 3.007635 GAGTCCCCTTAACACCAATTCG 58.992 50.000 0.00 0.00 0.00 3.34
727 740 4.208637 AATCTGAAGATCTGGGGAGTCCC 61.209 52.174 21.19 21.19 43.03 4.46
762 775 2.536130 CGAAACCGCGACAATATCCAAC 60.536 50.000 8.23 0.00 0.00 3.77
764 777 1.282817 CGAAACCGCGACAATATCCA 58.717 50.000 8.23 0.00 0.00 3.41
774 787 0.870307 CCTATCCAGACGAAACCGCG 60.870 60.000 0.00 0.00 37.29 6.46
777 790 5.880887 AGAAAATTCCTATCCAGACGAAACC 59.119 40.000 0.00 0.00 0.00 3.27
782 796 6.364945 GGAAAGAAAATTCCTATCCAGACG 57.635 41.667 0.00 0.00 44.54 4.18
798 812 6.282199 AGAGCAGTCGTTTATAGGAAAGAA 57.718 37.500 0.00 0.00 0.00 2.52
799 813 5.448768 CGAGAGCAGTCGTTTATAGGAAAGA 60.449 44.000 0.00 0.00 35.14 2.52
800 814 4.735822 CGAGAGCAGTCGTTTATAGGAAAG 59.264 45.833 0.00 0.00 35.14 2.62
801 815 4.669318 CGAGAGCAGTCGTTTATAGGAAA 58.331 43.478 0.00 0.00 35.14 3.13
803 817 3.965292 CGAGAGCAGTCGTTTATAGGA 57.035 47.619 0.00 0.00 35.14 2.94
818 832 6.927294 AATTTCCCAACTATTTAGCGAGAG 57.073 37.500 0.00 0.00 0.00 3.20
823 837 6.183360 GCAAGCAAATTTCCCAACTATTTAGC 60.183 38.462 0.00 0.00 0.00 3.09
824 838 7.099120 AGCAAGCAAATTTCCCAACTATTTAG 58.901 34.615 0.00 0.00 0.00 1.85
833 848 1.550072 GCCTAGCAAGCAAATTTCCCA 59.450 47.619 0.00 0.00 0.00 4.37
837 852 5.665916 ATGTAAGCCTAGCAAGCAAATTT 57.334 34.783 0.00 0.00 0.00 1.82
846 861 3.767131 TCACAGTGTATGTAAGCCTAGCA 59.233 43.478 0.00 0.00 41.41 3.49
848 863 6.143496 CGTATCACAGTGTATGTAAGCCTAG 58.857 44.000 0.00 0.00 41.41 3.02
851 866 3.489785 GCGTATCACAGTGTATGTAAGCC 59.510 47.826 0.00 0.00 41.41 4.35
863 878 2.078849 TCACCAACTGCGTATCACAG 57.921 50.000 0.00 0.00 41.08 3.66
867 882 4.569761 TCTAGATCACCAACTGCGTATC 57.430 45.455 0.00 0.00 0.00 2.24
869 884 3.762288 ACTTCTAGATCACCAACTGCGTA 59.238 43.478 0.00 0.00 0.00 4.42
871 886 2.926200 CACTTCTAGATCACCAACTGCG 59.074 50.000 0.00 0.00 0.00 5.18
887 902 4.745620 GGCCGACAAGATTCTATACACTTC 59.254 45.833 0.00 0.00 0.00 3.01
897 912 1.128692 CACGAAAGGCCGACAAGATTC 59.871 52.381 0.00 0.00 0.00 2.52
947 962 5.964477 AGAGGAACCAGTTATAATGAGGACA 59.036 40.000 7.54 0.00 0.00 4.02
948 963 6.325286 AGAGAGGAACCAGTTATAATGAGGAC 59.675 42.308 7.54 2.85 0.00 3.85
967 982 4.101856 TCCCTGGGTTTAGTAAAGAGAGG 58.898 47.826 13.56 1.80 0.00 3.69
1014 1029 0.808755 GGGCATCCAAGTTACCAACG 59.191 55.000 0.00 0.00 36.23 4.10
1020 1035 1.202099 TCACCCGGGCATCCAAGTTA 61.202 55.000 24.08 0.00 0.00 2.24
1059 1074 2.980568 ACTCCAAACACACGAAACTCA 58.019 42.857 0.00 0.00 0.00 3.41
1092 1113 5.688823 GCAAAGGCAAATTGTAATGAAACC 58.311 37.500 0.00 0.00 40.72 3.27
1171 1192 2.894765 TGGCATGCATGATTATCCTTGG 59.105 45.455 30.64 0.00 0.00 3.61
1205 1286 5.787953 TTTGCTTCAAAGATCCAACATCA 57.212 34.783 0.00 0.00 0.00 3.07
1219 1300 9.695526 GGCATACATAATTATCATTTTGCTTCA 57.304 29.630 0.00 0.00 0.00 3.02
1220 1301 9.695526 TGGCATACATAATTATCATTTTGCTTC 57.304 29.630 0.00 0.00 0.00 3.86
1221 1302 9.701098 CTGGCATACATAATTATCATTTTGCTT 57.299 29.630 0.00 0.00 0.00 3.91
1222 1303 7.816031 GCTGGCATACATAATTATCATTTTGCT 59.184 33.333 0.00 0.00 0.00 3.91
1223 1304 7.201376 CGCTGGCATACATAATTATCATTTTGC 60.201 37.037 0.00 1.71 0.00 3.68
1224 1305 8.022550 TCGCTGGCATACATAATTATCATTTTG 58.977 33.333 0.00 0.00 0.00 2.44
1225 1306 8.109705 TCGCTGGCATACATAATTATCATTTT 57.890 30.769 0.00 0.00 0.00 1.82
1226 1307 7.686438 TCGCTGGCATACATAATTATCATTT 57.314 32.000 0.00 0.00 0.00 2.32
1227 1308 7.870509 ATCGCTGGCATACATAATTATCATT 57.129 32.000 0.00 0.00 0.00 2.57
1228 1309 7.870509 AATCGCTGGCATACATAATTATCAT 57.129 32.000 0.00 0.00 0.00 2.45
1229 1310 8.829612 CATAATCGCTGGCATACATAATTATCA 58.170 33.333 0.00 0.00 0.00 2.15
1230 1311 7.800380 GCATAATCGCTGGCATACATAATTATC 59.200 37.037 0.00 0.00 0.00 1.75
1231 1312 7.500227 AGCATAATCGCTGGCATACATAATTAT 59.500 33.333 0.00 0.00 41.85 1.28
1232 1313 6.823182 AGCATAATCGCTGGCATACATAATTA 59.177 34.615 0.00 0.00 41.85 1.40
1233 1314 5.649395 AGCATAATCGCTGGCATACATAATT 59.351 36.000 0.00 0.00 41.85 1.40
1234 1315 5.188434 AGCATAATCGCTGGCATACATAAT 58.812 37.500 0.00 0.00 41.85 1.28
1235 1316 4.578871 AGCATAATCGCTGGCATACATAA 58.421 39.130 0.00 0.00 41.85 1.90
1236 1317 4.206477 AGCATAATCGCTGGCATACATA 57.794 40.909 0.00 0.00 41.85 2.29
1237 1318 3.063510 AGCATAATCGCTGGCATACAT 57.936 42.857 0.00 0.00 41.85 2.29
1238 1319 2.549064 AGCATAATCGCTGGCATACA 57.451 45.000 0.00 0.00 41.85 2.29
1239 1320 6.662414 TTATAAGCATAATCGCTGGCATAC 57.338 37.500 0.00 0.00 42.89 2.39
1240 1321 6.316140 CCTTTATAAGCATAATCGCTGGCATA 59.684 38.462 0.00 0.00 42.89 3.14
1241 1322 5.124457 CCTTTATAAGCATAATCGCTGGCAT 59.876 40.000 0.00 0.00 42.89 4.40
1242 1323 4.455533 CCTTTATAAGCATAATCGCTGGCA 59.544 41.667 0.00 0.00 42.89 4.92
1243 1324 4.142600 CCCTTTATAAGCATAATCGCTGGC 60.143 45.833 0.00 0.00 42.89 4.85
1244 1325 5.245531 TCCCTTTATAAGCATAATCGCTGG 58.754 41.667 0.00 0.00 42.89 4.85
1245 1326 6.676456 GCATCCCTTTATAAGCATAATCGCTG 60.676 42.308 0.00 0.00 42.89 5.18
1246 1327 5.355350 GCATCCCTTTATAAGCATAATCGCT 59.645 40.000 0.00 0.00 46.67 4.93
1247 1328 5.355350 AGCATCCCTTTATAAGCATAATCGC 59.645 40.000 0.00 0.00 0.00 4.58
1248 1329 6.992063 AGCATCCCTTTATAAGCATAATCG 57.008 37.500 0.00 0.00 0.00 3.34
1249 1330 9.844257 ATCTAGCATCCCTTTATAAGCATAATC 57.156 33.333 0.00 0.00 0.00 1.75
1250 1331 9.844257 GATCTAGCATCCCTTTATAAGCATAAT 57.156 33.333 0.00 0.00 0.00 1.28
1251 1332 9.051259 AGATCTAGCATCCCTTTATAAGCATAA 57.949 33.333 0.00 0.00 0.00 1.90
1252 1333 8.615360 AGATCTAGCATCCCTTTATAAGCATA 57.385 34.615 0.00 0.00 0.00 3.14
1253 1334 7.507797 AGATCTAGCATCCCTTTATAAGCAT 57.492 36.000 0.00 0.00 0.00 3.79
1254 1335 6.942163 AGATCTAGCATCCCTTTATAAGCA 57.058 37.500 0.00 0.00 0.00 3.91
1255 1336 7.880195 TCAAAGATCTAGCATCCCTTTATAAGC 59.120 37.037 0.00 0.00 0.00 3.09
1256 1337 9.784531 TTCAAAGATCTAGCATCCCTTTATAAG 57.215 33.333 0.00 0.00 0.00 1.73
1257 1338 9.784531 CTTCAAAGATCTAGCATCCCTTTATAA 57.215 33.333 0.00 0.00 0.00 0.98
1258 1339 7.880195 GCTTCAAAGATCTAGCATCCCTTTATA 59.120 37.037 9.84 0.00 33.88 0.98
1259 1340 6.714356 GCTTCAAAGATCTAGCATCCCTTTAT 59.286 38.462 9.84 0.00 33.88 1.40
1260 1341 6.058183 GCTTCAAAGATCTAGCATCCCTTTA 58.942 40.000 9.84 0.00 33.88 1.85
1261 1342 4.886489 GCTTCAAAGATCTAGCATCCCTTT 59.114 41.667 9.84 0.00 33.88 3.11
1262 1343 4.080129 TGCTTCAAAGATCTAGCATCCCTT 60.080 41.667 12.84 0.00 38.61 3.95
1263 1344 3.457380 TGCTTCAAAGATCTAGCATCCCT 59.543 43.478 12.84 0.00 38.61 4.20
1264 1345 3.813443 TGCTTCAAAGATCTAGCATCCC 58.187 45.455 12.84 0.00 38.61 3.85
1265 1346 6.388435 AATTGCTTCAAAGATCTAGCATCC 57.612 37.500 16.63 0.00 42.60 3.51
1266 1347 8.566260 ACATAATTGCTTCAAAGATCTAGCATC 58.434 33.333 16.63 0.00 42.60 3.91
1267 1348 8.461249 ACATAATTGCTTCAAAGATCTAGCAT 57.539 30.769 16.63 7.44 42.60 3.79
1268 1349 7.870509 ACATAATTGCTTCAAAGATCTAGCA 57.129 32.000 12.84 12.84 41.51 3.49
1269 1350 8.186821 ACAACATAATTGCTTCAAAGATCTAGC 58.813 33.333 8.07 8.07 0.00 3.42
1476 1587 9.755064 CTCAATTTAAAAGTCCATACTTGTACG 57.245 33.333 0.00 0.00 45.37 3.67
1503 1614 2.436417 CATGTCTCGGTGGTCCAAAAT 58.564 47.619 0.00 0.00 0.00 1.82
1529 1640 5.757886 TCAAGGTTCAGAAACGCTTAAATG 58.242 37.500 0.00 0.00 36.16 2.32
1537 1648 3.904136 AGCATTCAAGGTTCAGAAACG 57.096 42.857 0.00 0.00 36.16 3.60
1540 1651 5.453198 GGGAAAAAGCATTCAAGGTTCAGAA 60.453 40.000 0.00 0.00 0.00 3.02
1554 1665 4.769345 ACCATTTTGAAGGGAAAAAGCA 57.231 36.364 0.00 0.00 35.48 3.91
1562 1673 4.381932 GCTGAACCATACCATTTTGAAGGG 60.382 45.833 0.00 0.00 38.57 3.95
1585 1696 6.038714 GCCTCCACCTCAAAAGATATTTAGTG 59.961 42.308 0.00 0.00 0.00 2.74
1589 1700 4.017130 AGGCCTCCACCTCAAAAGATATTT 60.017 41.667 0.00 0.00 33.62 1.40
1590 1701 3.529319 AGGCCTCCACCTCAAAAGATATT 59.471 43.478 0.00 0.00 33.62 1.28
1609 1720 3.736720 TCATCAGCTGAATGATACAGGC 58.263 45.455 22.50 0.00 37.84 4.85
1682 1794 5.826737 CCAACATGCCAAGAGATAGAGAAAT 59.173 40.000 0.00 0.00 0.00 2.17
1698 1810 1.949525 ACAACAGTCAGTCCAACATGC 59.050 47.619 0.00 0.00 0.00 4.06
1714 1826 4.024048 CCCAGACACTACATTGAACACAAC 60.024 45.833 0.00 0.00 0.00 3.32
1769 1881 0.871722 CCCGCTTGTCGTCAAAATCA 59.128 50.000 0.00 0.00 36.19 2.57
1825 1937 2.229784 GCCTCCACAAGAGAAATGGTTG 59.770 50.000 0.00 0.00 46.50 3.77
1855 1967 1.349688 ACGTAATGTCCTGCCCAAGAA 59.650 47.619 0.00 0.00 0.00 2.52
1874 1986 6.207417 TCAGATCCAGGAAACAAAGAAATGAC 59.793 38.462 0.00 0.00 0.00 3.06
1880 1992 6.777091 TGAAAATCAGATCCAGGAAACAAAGA 59.223 34.615 0.00 0.00 0.00 2.52
1922 2042 4.367450 TGCAAGTTCTACATGTTTTTGCC 58.633 39.130 19.98 9.92 38.82 4.52
1965 2086 5.438761 TTGAAAGCTTGCTTCCTTAACTC 57.561 39.130 5.89 1.72 0.00 3.01
2047 2199 7.834068 TGATCTAAGAACTCGAAAAGATTGG 57.166 36.000 0.00 0.00 0.00 3.16
2104 2256 6.550938 ACAATCTACTGTCATGGATGAGAA 57.449 37.500 0.00 0.00 37.51 2.87
2133 2290 9.174166 TGCCTATTAAAAGAGAAACCATACTTC 57.826 33.333 0.00 0.00 0.00 3.01
2299 2459 2.061773 AGACGACATTCACGAGCAAAG 58.938 47.619 0.00 0.00 34.70 2.77
2452 2613 8.352942 CAAAGCTAACCTAAACAATTGAGACTT 58.647 33.333 13.59 2.59 0.00 3.01
2453 2614 7.502561 ACAAAGCTAACCTAAACAATTGAGACT 59.497 33.333 13.59 0.00 0.00 3.24
2454 2615 7.649057 ACAAAGCTAACCTAAACAATTGAGAC 58.351 34.615 13.59 0.00 0.00 3.36
2455 2616 7.817418 ACAAAGCTAACCTAAACAATTGAGA 57.183 32.000 13.59 0.00 0.00 3.27
2456 2617 7.920682 ACAACAAAGCTAACCTAAACAATTGAG 59.079 33.333 13.59 0.00 0.00 3.02
2459 2620 8.254508 TGAACAACAAAGCTAACCTAAACAATT 58.745 29.630 0.00 0.00 0.00 2.32
2460 2621 7.777095 TGAACAACAAAGCTAACCTAAACAAT 58.223 30.769 0.00 0.00 0.00 2.71
2490 2652 8.649841 CCATTTTTGACATAAACAGTATGCAAG 58.350 33.333 0.00 0.00 42.53 4.01
2494 2656 8.434661 GCAACCATTTTTGACATAAACAGTATG 58.565 33.333 0.00 0.00 46.00 2.39
2531 2701 7.578955 GCTTGACATGGTAGGTAGAAGAACTTA 60.579 40.741 0.00 0.00 0.00 2.24
2532 2702 6.681729 TTGACATGGTAGGTAGAAGAACTT 57.318 37.500 0.00 0.00 0.00 2.66
2540 2710 3.535561 CCAAGCTTGACATGGTAGGTAG 58.464 50.000 28.05 2.04 32.22 3.18
2552 2722 2.115910 CCAGGCACCCAAGCTTGA 59.884 61.111 28.05 0.00 43.51 3.02
2594 2766 6.091441 GCACAAAGTAGAGAAACCTCACATAG 59.909 42.308 0.00 0.00 33.16 2.23
2809 2983 5.533903 GGTGATATTTCCACAGAATCTGCAT 59.466 40.000 10.62 0.00 36.31 3.96
2840 3041 3.843619 TCCAGTATGAGATTGGGACACAA 59.156 43.478 0.00 0.00 40.91 3.33
2841 3042 3.197766 GTCCAGTATGAGATTGGGACACA 59.802 47.826 0.00 0.00 43.27 3.72
2848 3049 4.501229 GGAGAGCAGTCCAGTATGAGATTG 60.501 50.000 0.00 0.00 39.69 2.67
2850 3051 3.230134 GGAGAGCAGTCCAGTATGAGAT 58.770 50.000 0.00 0.00 39.69 2.75
2907 3108 2.079158 AGAGAACATGCATTGGACACG 58.921 47.619 0.00 0.00 0.00 4.49
2914 3115 5.163281 ACTTCTCTCAGAGAACATGCATT 57.837 39.130 13.49 0.00 42.78 3.56
3042 3254 4.144297 GCATACCACATCCACCACATAAT 58.856 43.478 0.00 0.00 0.00 1.28
3143 3355 1.412710 AGACAACAACTGAAGAGCCGA 59.587 47.619 0.00 0.00 0.00 5.54
3174 3386 3.723250 GCGAAGAATGAAGAGCGAACAAG 60.723 47.826 0.00 0.00 0.00 3.16
3222 3434 2.182842 CGCAGGCAGGGACTAATGC 61.183 63.158 0.00 0.00 41.80 3.56
3251 3463 1.867233 GCAGCTCTTCAACGAAGAACA 59.133 47.619 7.76 0.00 46.18 3.18
3351 3563 8.988060 TCCTGGTTCTATATACAAAATCAGTGA 58.012 33.333 0.00 0.00 0.00 3.41
3354 3566 9.482627 GACTCCTGGTTCTATATACAAAATCAG 57.517 37.037 0.00 0.00 0.00 2.90
3357 3569 7.934120 GCTGACTCCTGGTTCTATATACAAAAT 59.066 37.037 0.00 0.00 0.00 1.82
3371 3583 1.958288 ATACCTTGCTGACTCCTGGT 58.042 50.000 0.00 0.00 0.00 4.00
3406 3618 7.456684 CAGGATGTAGATTTAGTTTCACTCG 57.543 40.000 0.00 0.00 0.00 4.18
3440 3652 1.619827 CAGCTCAAGGCCCATTTTTCA 59.380 47.619 0.00 0.00 43.05 2.69
3505 3717 3.991367 ACTGTTTTAAGTGGACTCTCGG 58.009 45.455 0.00 0.00 0.00 4.63
3514 3726 7.087639 TGAAGTCCACAAAACTGTTTTAAGTG 58.912 34.615 20.76 20.76 33.66 3.16
3515 3727 7.222000 TGAAGTCCACAAAACTGTTTTAAGT 57.778 32.000 17.31 10.09 0.00 2.24
3517 3729 8.062065 AGATGAAGTCCACAAAACTGTTTTAA 57.938 30.769 17.31 2.57 0.00 1.52
3518 3730 7.466725 CGAGATGAAGTCCACAAAACTGTTTTA 60.467 37.037 17.31 0.43 0.00 1.52
3519 3731 6.530019 AGATGAAGTCCACAAAACTGTTTT 57.470 33.333 12.50 12.50 0.00 2.43
3543 3757 1.594862 CTGAAGCCGAGAATAAAGCCG 59.405 52.381 0.00 0.00 0.00 5.52
3549 3763 1.335182 CTCTCGCTGAAGCCGAGAATA 59.665 52.381 19.75 6.28 43.91 1.75
3551 3765 1.244697 ACTCTCGCTGAAGCCGAGAA 61.245 55.000 19.75 9.91 43.91 2.87
3552 3766 1.649390 GACTCTCGCTGAAGCCGAGA 61.649 60.000 17.99 18.43 43.12 4.04
3553 3767 1.226547 GACTCTCGCTGAAGCCGAG 60.227 63.158 14.14 14.14 40.43 4.63
3554 3768 1.524008 TTGACTCTCGCTGAAGCCGA 61.524 55.000 0.00 0.00 37.91 5.54
3555 3769 0.459237 ATTGACTCTCGCTGAAGCCG 60.459 55.000 0.00 0.00 37.91 5.52
3556 3770 1.285578 GATTGACTCTCGCTGAAGCC 58.714 55.000 0.00 0.00 37.91 4.35
3557 3771 1.285578 GGATTGACTCTCGCTGAAGC 58.714 55.000 0.00 0.00 37.78 3.86
3558 3772 2.662006 TGGATTGACTCTCGCTGAAG 57.338 50.000 0.00 0.00 0.00 3.02
3559 3773 3.616956 AATGGATTGACTCTCGCTGAA 57.383 42.857 0.00 0.00 0.00 3.02
3560 3774 3.616956 AAATGGATTGACTCTCGCTGA 57.383 42.857 0.00 0.00 0.00 4.26
3561 3775 5.582269 TCTTTAAATGGATTGACTCTCGCTG 59.418 40.000 0.00 0.00 0.00 5.18
3562 3776 5.734720 TCTTTAAATGGATTGACTCTCGCT 58.265 37.500 0.00 0.00 0.00 4.93
3563 3777 5.582665 ACTCTTTAAATGGATTGACTCTCGC 59.417 40.000 0.00 0.00 0.00 5.03
3584 3798 0.716108 CGATGAAGTCCGCACAACTC 59.284 55.000 0.00 0.00 0.00 3.01
3589 3803 1.298859 AAAGCCGATGAAGTCCGCAC 61.299 55.000 0.00 0.00 34.09 5.34
3603 3817 3.316308 ACATGAATGCCGAGAATAAAGCC 59.684 43.478 0.00 0.00 0.00 4.35
3604 3818 4.558538 ACATGAATGCCGAGAATAAAGC 57.441 40.909 0.00 0.00 0.00 3.51
3605 3819 6.369059 AGAACATGAATGCCGAGAATAAAG 57.631 37.500 0.00 0.00 0.00 1.85
3606 3820 6.456853 CGAAGAACATGAATGCCGAGAATAAA 60.457 38.462 0.00 0.00 0.00 1.40
3607 3821 5.006649 CGAAGAACATGAATGCCGAGAATAA 59.993 40.000 0.00 0.00 0.00 1.40
3608 3822 4.507756 CGAAGAACATGAATGCCGAGAATA 59.492 41.667 0.00 0.00 0.00 1.75
3609 3823 3.310774 CGAAGAACATGAATGCCGAGAAT 59.689 43.478 0.00 0.00 0.00 2.40
3610 3824 2.672874 CGAAGAACATGAATGCCGAGAA 59.327 45.455 0.00 0.00 0.00 2.87
3611 3825 2.270923 CGAAGAACATGAATGCCGAGA 58.729 47.619 0.00 0.00 0.00 4.04
3612 3826 1.267732 GCGAAGAACATGAATGCCGAG 60.268 52.381 0.00 0.00 0.00 4.63
3613 3827 0.726827 GCGAAGAACATGAATGCCGA 59.273 50.000 0.00 0.00 0.00 5.54
3614 3828 0.447406 TGCGAAGAACATGAATGCCG 59.553 50.000 0.00 0.00 0.00 5.69
3615 3829 1.470098 ACTGCGAAGAACATGAATGCC 59.530 47.619 0.00 0.00 0.00 4.40
3686 3905 4.179298 CGCAGATGAAGATGAAGTTGAGA 58.821 43.478 0.00 0.00 0.00 3.27
3690 3909 2.417933 GCACGCAGATGAAGATGAAGTT 59.582 45.455 0.00 0.00 0.00 2.66
3709 3928 6.552859 TTGTCGAAGATAACAAATGAAGCA 57.447 33.333 0.00 0.00 40.67 3.91
3725 3944 6.183360 GGCAGAAATATACTCGTTTTGTCGAA 60.183 38.462 0.00 0.00 39.34 3.71
3733 3952 4.122776 CAGCAGGCAGAAATATACTCGTT 58.877 43.478 0.00 0.00 0.00 3.85
3734 3953 3.722147 CAGCAGGCAGAAATATACTCGT 58.278 45.455 0.00 0.00 0.00 4.18
3735 3954 2.478134 GCAGCAGGCAGAAATATACTCG 59.522 50.000 0.00 0.00 43.97 4.18
3748 3967 3.130160 GCAGTGTAGGCAGCAGGC 61.130 66.667 0.00 0.00 43.74 4.85
3749 3968 0.178767 TATGCAGTGTAGGCAGCAGG 59.821 55.000 0.00 0.00 45.68 4.85
3750 3969 1.134580 ACTATGCAGTGTAGGCAGCAG 60.135 52.381 0.00 0.00 45.68 4.24
3751 3970 0.904649 ACTATGCAGTGTAGGCAGCA 59.095 50.000 0.00 0.00 45.68 4.41
3752 3971 1.137872 AGACTATGCAGTGTAGGCAGC 59.862 52.381 1.62 0.00 45.68 5.25
3753 3972 2.223923 GGAGACTATGCAGTGTAGGCAG 60.224 54.545 1.62 0.00 45.68 4.85
3754 3973 1.757118 GGAGACTATGCAGTGTAGGCA 59.243 52.381 1.62 0.00 46.66 4.75
3755 3974 1.269309 CGGAGACTATGCAGTGTAGGC 60.269 57.143 0.00 0.00 34.21 3.93
3756 3975 2.025155 ACGGAGACTATGCAGTGTAGG 58.975 52.381 0.00 0.00 34.21 3.18
3806 4053 6.409704 CAAGACATTCCCATTCAGAGACTAA 58.590 40.000 0.00 0.00 0.00 2.24
3814 4061 2.601240 TGGCAAGACATTCCCATTCA 57.399 45.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.