Multiple sequence alignment - TraesCS6A01G349300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G349300 chr6A 100.000 4930 0 0 1 4930 581799659 581794730 0.000000e+00 9105.0
1 TraesCS6A01G349300 chr6A 100.000 45 0 0 5252 5296 581794408 581794364 3.400000e-12 84.2
2 TraesCS6A01G349300 chr6B 92.600 3919 152 66 649 4502 657287126 657283281 0.000000e+00 5504.0
3 TraesCS6A01G349300 chr6B 92.308 351 18 5 4456 4802 657283275 657282930 1.710000e-134 490.0
4 TraesCS6A01G349300 chr6B 86.982 169 20 2 454 620 361933817 361933985 7.000000e-44 189.0
5 TraesCS6A01G349300 chr6B 91.803 61 5 0 4449 4509 486082662 486082602 9.450000e-13 86.1
6 TraesCS6A01G349300 chr6D 95.904 2417 62 12 2012 4416 434462537 434460146 0.000000e+00 3880.0
7 TraesCS6A01G349300 chr6D 85.820 1488 73 54 617 2013 434464139 434462699 0.000000e+00 1452.0
8 TraesCS6A01G349300 chr6D 88.235 272 12 8 4676 4930 434459031 434458763 1.850000e-79 307.0
9 TraesCS6A01G349300 chr6D 97.126 174 5 0 4508 4681 434460147 434459974 1.440000e-75 294.0
10 TraesCS6A01G349300 chr4D 82.849 2408 256 71 1577 3922 498958049 498960361 0.000000e+00 2013.0
11 TraesCS6A01G349300 chr4D 89.809 157 14 2 463 617 97930474 97930630 3.230000e-47 200.0
12 TraesCS6A01G349300 chr4D 93.750 64 3 1 252 314 3745865 3745802 1.570000e-15 95.3
13 TraesCS6A01G349300 chr4D 81.897 116 14 5 4546 4660 499217868 499217977 2.030000e-14 91.6
14 TraesCS6A01G349300 chr4D 97.727 44 1 0 4352 4395 498961251 498961294 5.690000e-10 76.8
15 TraesCS6A01G349300 chr5A 82.484 2432 257 84 1577 3941 679755828 679758157 0.000000e+00 1975.0
16 TraesCS6A01G349300 chr5A 85.714 98 7 5 4564 4660 679759454 679759545 4.370000e-16 97.1
17 TraesCS6A01G349300 chr5A 97.727 44 1 0 4352 4395 679758940 679758983 5.690000e-10 76.8
18 TraesCS6A01G349300 chr4B 85.586 1332 122 38 2644 3943 641421560 641422853 0.000000e+00 1332.0
19 TraesCS6A01G349300 chr4B 81.731 1040 124 25 1577 2578 641420541 641421552 0.000000e+00 808.0
20 TraesCS6A01G349300 chr4B 76.856 229 42 9 92 316 68738116 68738337 9.320000e-23 119.0
21 TraesCS6A01G349300 chr4B 84.259 108 8 8 4554 4660 641423870 641423969 4.370000e-16 97.1
22 TraesCS6A01G349300 chr1B 89.441 161 15 2 463 621 427602952 427603112 8.990000e-48 202.0
23 TraesCS6A01G349300 chr1B 93.443 61 4 0 4449 4509 393535857 393535917 2.030000e-14 91.6
24 TraesCS6A01G349300 chr5B 88.485 165 18 1 453 616 32592597 32592761 1.160000e-46 198.0
25 TraesCS6A01G349300 chr5B 92.537 67 4 1 250 315 591519157 591519223 1.570000e-15 95.3
26 TraesCS6A01G349300 chr7D 88.820 161 16 2 463 621 597300959 597300799 4.180000e-46 196.0
27 TraesCS6A01G349300 chr7D 86.857 175 21 2 446 618 593377000 593376826 1.500000e-45 195.0
28 TraesCS6A01G349300 chr7D 91.803 61 4 1 257 316 183027564 183027624 3.400000e-12 84.2
29 TraesCS6A01G349300 chr3B 89.241 158 15 2 461 616 815882425 815882268 4.180000e-46 196.0
30 TraesCS6A01G349300 chr3B 96.491 57 2 0 4449 4505 188155768 188155712 1.570000e-15 95.3
31 TraesCS6A01G349300 chr3B 94.828 58 3 0 4448 4505 3038076 3038133 2.030000e-14 91.6
32 TraesCS6A01G349300 chr2D 89.172 157 15 2 463 617 416758774 416758618 1.500000e-45 195.0
33 TraesCS6A01G349300 chr2D 96.825 63 2 0 4447 4509 138808248 138808186 7.250000e-19 106.0
34 TraesCS6A01G349300 chr3A 87.135 171 20 2 448 616 52732139 52732309 5.410000e-45 193.0
35 TraesCS6A01G349300 chr3A 84.298 121 17 2 199 317 691624814 691624694 3.350000e-22 117.0
36 TraesCS6A01G349300 chr4A 79.821 223 40 5 98 316 720955732 720955953 1.970000e-34 158.0
37 TraesCS6A01G349300 chr2B 85.000 120 15 2 199 315 772985075 772984956 9.320000e-23 119.0
38 TraesCS6A01G349300 chr1D 92.188 64 5 0 4448 4511 7687483 7687420 2.030000e-14 91.6
39 TraesCS6A01G349300 chr2A 90.000 70 4 3 4448 4515 632925215 632925283 2.630000e-13 87.9
40 TraesCS6A01G349300 chr7B 100.000 29 0 0 4800 4828 687656804 687656776 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G349300 chr6A 581794364 581799659 5295 True 4594.60 9105 100.000000 1 5296 2 chr6A.!!$R1 5295
1 TraesCS6A01G349300 chr6B 657282930 657287126 4196 True 2997.00 5504 92.454000 649 4802 2 chr6B.!!$R2 4153
2 TraesCS6A01G349300 chr6D 434458763 434464139 5376 True 1483.25 3880 91.771250 617 4930 4 chr6D.!!$R1 4313
3 TraesCS6A01G349300 chr4D 498958049 498961294 3245 False 1044.90 2013 90.288000 1577 4395 2 chr4D.!!$F3 2818
4 TraesCS6A01G349300 chr5A 679755828 679759545 3717 False 716.30 1975 88.641667 1577 4660 3 chr5A.!!$F1 3083
5 TraesCS6A01G349300 chr4B 641420541 641423969 3428 False 745.70 1332 83.858667 1577 4660 3 chr4B.!!$F2 3083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.172803 GGTACGAAGCACTCCGACAT 59.827 55.000 0.00 0.00 0.00 3.06 F
307 308 0.316937 GTGTTCATGCCACACGTGTG 60.317 55.000 36.13 36.13 45.23 3.82 F
413 414 0.534877 ACACGATGAAGCCAGTTGCA 60.535 50.000 0.00 0.00 44.83 4.08 F
414 415 0.592637 CACGATGAAGCCAGTTGCAA 59.407 50.000 0.00 0.00 44.83 4.08 F
430 431 0.733150 GCAATCGGCAACCCTCTAAC 59.267 55.000 0.00 0.00 43.97 2.34 F
975 989 0.905337 AGACCCAACGGAGAAGGGAG 60.905 60.000 3.32 0.00 45.19 4.30 F
2480 2810 0.107508 TAGGCAGCTCACTGGAATGC 60.108 55.000 0.00 0.00 44.63 3.56 F
3365 3717 1.004745 ACTACTCTTGGCATGGTTGGG 59.995 52.381 0.00 0.00 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1522 1582 0.562674 AACATCCATCCCCAATCCCC 59.437 55.000 0.00 0.0 0.00 4.81 R
1609 1681 4.070630 AGATAATCTGAGAGCAGCCAAC 57.929 45.455 0.00 0.0 42.01 3.77 R
1699 1807 4.564613 GCTCCTAAATGAATCCTAGGCTCC 60.565 50.000 2.96 0.0 33.51 4.70 R
1877 2006 5.804692 TGGTGTAGTGTTAACAAACAGTG 57.195 39.130 19.93 0.0 36.99 3.66 R
2421 2748 9.264719 AGGAAGAAATTTTATTTTGCACAGAAG 57.735 29.630 0.00 0.0 0.00 2.85 R
2759 3094 1.482182 TGCCTCACTGGTGCTATACTG 59.518 52.381 0.00 0.0 38.35 2.74 R
4156 5037 1.495951 GCGTAAACTGTGAAGGCGG 59.504 57.895 0.00 0.0 0.00 6.13 R
4488 5493 0.250338 GTGCTCCCTCCGTTCACTTT 60.250 55.000 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.901552 TGCACGATATGAAACTCACTATCA 58.098 37.500 0.00 0.00 0.00 2.15
25 26 5.748630 TGCACGATATGAAACTCACTATCAC 59.251 40.000 0.00 0.00 0.00 3.06
26 27 5.748630 GCACGATATGAAACTCACTATCACA 59.251 40.000 0.00 0.00 0.00 3.58
27 28 6.074623 GCACGATATGAAACTCACTATCACAG 60.075 42.308 0.00 0.00 0.00 3.66
28 29 6.419116 CACGATATGAAACTCACTATCACAGG 59.581 42.308 0.00 0.00 0.00 4.00
29 30 5.403766 CGATATGAAACTCACTATCACAGGC 59.596 44.000 0.00 0.00 0.00 4.85
30 31 4.558226 ATGAAACTCACTATCACAGGCA 57.442 40.909 0.00 0.00 0.00 4.75
31 32 4.350368 TGAAACTCACTATCACAGGCAA 57.650 40.909 0.00 0.00 0.00 4.52
32 33 4.713553 TGAAACTCACTATCACAGGCAAA 58.286 39.130 0.00 0.00 0.00 3.68
33 34 5.316167 TGAAACTCACTATCACAGGCAAAT 58.684 37.500 0.00 0.00 0.00 2.32
34 35 5.769662 TGAAACTCACTATCACAGGCAAATT 59.230 36.000 0.00 0.00 0.00 1.82
35 36 6.265196 TGAAACTCACTATCACAGGCAAATTT 59.735 34.615 0.00 0.00 0.00 1.82
36 37 5.886960 ACTCACTATCACAGGCAAATTTC 57.113 39.130 0.00 0.00 0.00 2.17
37 38 5.316167 ACTCACTATCACAGGCAAATTTCA 58.684 37.500 0.00 0.00 0.00 2.69
38 39 5.769662 ACTCACTATCACAGGCAAATTTCAA 59.230 36.000 0.00 0.00 0.00 2.69
39 40 6.265196 ACTCACTATCACAGGCAAATTTCAAA 59.735 34.615 0.00 0.00 0.00 2.69
40 41 6.446318 TCACTATCACAGGCAAATTTCAAAC 58.554 36.000 0.00 0.00 0.00 2.93
41 42 6.040278 TCACTATCACAGGCAAATTTCAAACA 59.960 34.615 0.00 0.00 0.00 2.83
42 43 6.700960 CACTATCACAGGCAAATTTCAAACAA 59.299 34.615 0.00 0.00 0.00 2.83
43 44 6.925165 ACTATCACAGGCAAATTTCAAACAAG 59.075 34.615 0.00 0.00 0.00 3.16
44 45 5.083533 TCACAGGCAAATTTCAAACAAGT 57.916 34.783 0.00 0.00 0.00 3.16
45 46 4.869297 TCACAGGCAAATTTCAAACAAGTG 59.131 37.500 0.00 0.00 0.00 3.16
46 47 3.622612 ACAGGCAAATTTCAAACAAGTGC 59.377 39.130 0.00 0.00 0.00 4.40
47 48 3.622163 CAGGCAAATTTCAAACAAGTGCA 59.378 39.130 0.00 0.00 0.00 4.57
48 49 3.622612 AGGCAAATTTCAAACAAGTGCAC 59.377 39.130 9.40 9.40 0.00 4.57
49 50 3.373439 GGCAAATTTCAAACAAGTGCACA 59.627 39.130 21.04 0.00 0.00 4.57
50 51 4.142730 GGCAAATTTCAAACAAGTGCACAA 60.143 37.500 21.04 1.61 0.00 3.33
51 52 5.388944 GCAAATTTCAAACAAGTGCACAAA 58.611 33.333 21.04 9.14 0.00 2.83
52 53 5.855395 GCAAATTTCAAACAAGTGCACAAAA 59.145 32.000 21.04 7.73 0.00 2.44
53 54 6.361748 GCAAATTTCAAACAAGTGCACAAAAA 59.638 30.769 21.04 8.40 0.00 1.94
54 55 7.409555 GCAAATTTCAAACAAGTGCACAAAAAG 60.410 33.333 21.04 6.06 0.00 2.27
55 56 7.432350 AATTTCAAACAAGTGCACAAAAAGA 57.568 28.000 21.04 6.71 0.00 2.52
56 57 6.851222 TTTCAAACAAGTGCACAAAAAGAA 57.149 29.167 21.04 12.39 0.00 2.52
57 58 7.432350 TTTCAAACAAGTGCACAAAAAGAAT 57.568 28.000 21.04 0.00 0.00 2.40
58 59 7.432350 TTCAAACAAGTGCACAAAAAGAATT 57.568 28.000 21.04 0.00 0.00 2.17
59 60 8.539770 TTCAAACAAGTGCACAAAAAGAATTA 57.460 26.923 21.04 0.00 0.00 1.40
60 61 8.715191 TCAAACAAGTGCACAAAAAGAATTAT 57.285 26.923 21.04 0.00 0.00 1.28
61 62 9.809096 TCAAACAAGTGCACAAAAAGAATTATA 57.191 25.926 21.04 0.00 0.00 0.98
63 64 9.816354 AAACAAGTGCACAAAAAGAATTATAGT 57.184 25.926 21.04 0.00 0.00 2.12
79 80 9.672673 AGAATTATAGTAAGTTGACATGTTGCT 57.327 29.630 0.00 0.00 0.00 3.91
80 81 9.708222 GAATTATAGTAAGTTGACATGTTGCTG 57.292 33.333 0.00 0.00 0.00 4.41
81 82 3.904136 AGTAAGTTGACATGTTGCTGC 57.096 42.857 0.00 0.00 0.00 5.25
82 83 3.213506 AGTAAGTTGACATGTTGCTGCA 58.786 40.909 0.00 0.00 0.00 4.41
83 84 3.631686 AGTAAGTTGACATGTTGCTGCAA 59.368 39.130 11.69 11.69 0.00 4.08
84 85 3.523606 AAGTTGACATGTTGCTGCAAA 57.476 38.095 17.80 8.09 0.00 3.68
85 86 3.523606 AGTTGACATGTTGCTGCAAAA 57.476 38.095 17.80 12.85 0.00 2.44
86 87 3.859443 AGTTGACATGTTGCTGCAAAAA 58.141 36.364 17.80 9.05 0.00 1.94
87 88 4.444536 AGTTGACATGTTGCTGCAAAAAT 58.555 34.783 17.80 11.05 0.00 1.82
88 89 5.599732 AGTTGACATGTTGCTGCAAAAATA 58.400 33.333 17.80 4.58 0.00 1.40
89 90 6.047870 AGTTGACATGTTGCTGCAAAAATAA 58.952 32.000 17.80 5.43 0.00 1.40
90 91 6.538021 AGTTGACATGTTGCTGCAAAAATAAA 59.462 30.769 17.80 1.39 0.00 1.40
91 92 6.284475 TGACATGTTGCTGCAAAAATAAAC 57.716 33.333 17.80 3.93 0.00 2.01
92 93 5.236047 TGACATGTTGCTGCAAAAATAAACC 59.764 36.000 17.80 2.50 0.00 3.27
93 94 4.514816 ACATGTTGCTGCAAAAATAAACCC 59.485 37.500 17.80 1.75 0.00 4.11
94 95 4.142609 TGTTGCTGCAAAAATAAACCCA 57.857 36.364 17.80 4.55 0.00 4.51
95 96 4.517285 TGTTGCTGCAAAAATAAACCCAA 58.483 34.783 17.80 0.00 0.00 4.12
96 97 4.943705 TGTTGCTGCAAAAATAAACCCAAA 59.056 33.333 17.80 0.00 0.00 3.28
97 98 5.591877 TGTTGCTGCAAAAATAAACCCAAAT 59.408 32.000 17.80 0.00 0.00 2.32
98 99 6.767902 TGTTGCTGCAAAAATAAACCCAAATA 59.232 30.769 17.80 0.00 0.00 1.40
99 100 7.446625 TGTTGCTGCAAAAATAAACCCAAATAT 59.553 29.630 17.80 0.00 0.00 1.28
100 101 7.992754 TGCTGCAAAAATAAACCCAAATATT 57.007 28.000 0.00 0.00 0.00 1.28
101 102 9.507329 TTGCTGCAAAAATAAACCCAAATATTA 57.493 25.926 13.51 0.00 0.00 0.98
102 103 9.507329 TGCTGCAAAAATAAACCCAAATATTAA 57.493 25.926 0.00 0.00 0.00 1.40
103 104 9.986833 GCTGCAAAAATAAACCCAAATATTAAG 57.013 29.630 0.00 0.00 0.00 1.85
123 124 4.859304 AGTGTCATACTTGTGGTACGAA 57.141 40.909 0.00 0.00 35.67 3.85
124 125 4.806330 AGTGTCATACTTGTGGTACGAAG 58.194 43.478 0.00 0.00 35.67 3.79
125 126 3.367025 GTGTCATACTTGTGGTACGAAGC 59.633 47.826 0.00 0.00 32.72 3.86
126 127 3.006003 TGTCATACTTGTGGTACGAAGCA 59.994 43.478 0.00 0.00 32.72 3.91
132 133 4.084265 TGGTACGAAGCACTCCGA 57.916 55.556 0.00 0.00 0.00 4.55
133 134 1.582968 TGGTACGAAGCACTCCGAC 59.417 57.895 0.00 0.00 0.00 4.79
134 135 1.174078 TGGTACGAAGCACTCCGACA 61.174 55.000 0.00 0.00 0.00 4.35
135 136 0.172803 GGTACGAAGCACTCCGACAT 59.827 55.000 0.00 0.00 0.00 3.06
136 137 1.403780 GGTACGAAGCACTCCGACATT 60.404 52.381 0.00 0.00 0.00 2.71
137 138 1.654105 GTACGAAGCACTCCGACATTG 59.346 52.381 0.00 0.00 0.00 2.82
138 139 0.317160 ACGAAGCACTCCGACATTGA 59.683 50.000 0.00 0.00 0.00 2.57
139 140 0.994995 CGAAGCACTCCGACATTGAG 59.005 55.000 0.00 0.00 35.92 3.02
140 141 1.363744 GAAGCACTCCGACATTGAGG 58.636 55.000 0.00 0.00 34.06 3.86
141 142 0.687354 AAGCACTCCGACATTGAGGT 59.313 50.000 0.00 0.00 34.06 3.85
142 143 0.687354 AGCACTCCGACATTGAGGTT 59.313 50.000 0.00 0.00 34.06 3.50
143 144 1.072331 AGCACTCCGACATTGAGGTTT 59.928 47.619 0.00 0.00 34.06 3.27
144 145 1.880027 GCACTCCGACATTGAGGTTTT 59.120 47.619 0.00 0.00 34.06 2.43
145 146 2.293399 GCACTCCGACATTGAGGTTTTT 59.707 45.455 0.00 0.00 34.06 1.94
167 168 7.925043 TTTTACAAATAAAGCTACCATCCGA 57.075 32.000 0.00 0.00 31.90 4.55
168 169 7.925043 TTTACAAATAAAGCTACCATCCGAA 57.075 32.000 0.00 0.00 0.00 4.30
169 170 7.925043 TTACAAATAAAGCTACCATCCGAAA 57.075 32.000 0.00 0.00 0.00 3.46
170 171 6.827586 ACAAATAAAGCTACCATCCGAAAA 57.172 33.333 0.00 0.00 0.00 2.29
171 172 6.852664 ACAAATAAAGCTACCATCCGAAAAG 58.147 36.000 0.00 0.00 0.00 2.27
172 173 6.657541 ACAAATAAAGCTACCATCCGAAAAGA 59.342 34.615 0.00 0.00 0.00 2.52
173 174 7.175990 ACAAATAAAGCTACCATCCGAAAAGAA 59.824 33.333 0.00 0.00 0.00 2.52
174 175 7.696992 AATAAAGCTACCATCCGAAAAGAAA 57.303 32.000 0.00 0.00 0.00 2.52
175 176 7.696992 ATAAAGCTACCATCCGAAAAGAAAA 57.303 32.000 0.00 0.00 0.00 2.29
176 177 6.399639 AAAGCTACCATCCGAAAAGAAAAA 57.600 33.333 0.00 0.00 0.00 1.94
177 178 5.372547 AGCTACCATCCGAAAAGAAAAAC 57.627 39.130 0.00 0.00 0.00 2.43
178 179 4.825085 AGCTACCATCCGAAAAGAAAAACA 59.175 37.500 0.00 0.00 0.00 2.83
179 180 5.300792 AGCTACCATCCGAAAAGAAAAACAA 59.699 36.000 0.00 0.00 0.00 2.83
180 181 5.980715 GCTACCATCCGAAAAGAAAAACAAA 59.019 36.000 0.00 0.00 0.00 2.83
181 182 6.074516 GCTACCATCCGAAAAGAAAAACAAAC 60.075 38.462 0.00 0.00 0.00 2.93
182 183 5.725362 ACCATCCGAAAAGAAAAACAAACA 58.275 33.333 0.00 0.00 0.00 2.83
183 184 6.166982 ACCATCCGAAAAGAAAAACAAACAA 58.833 32.000 0.00 0.00 0.00 2.83
184 185 6.651225 ACCATCCGAAAAGAAAAACAAACAAA 59.349 30.769 0.00 0.00 0.00 2.83
185 186 7.173390 ACCATCCGAAAAGAAAAACAAACAAAA 59.827 29.630 0.00 0.00 0.00 2.44
186 187 8.017946 CCATCCGAAAAGAAAAACAAACAAAAA 58.982 29.630 0.00 0.00 0.00 1.94
205 206 4.853924 AAAAAGACGAAACATGCCATCT 57.146 36.364 0.00 0.00 0.00 2.90
206 207 3.837213 AAAGACGAAACATGCCATCTG 57.163 42.857 0.00 0.00 0.00 2.90
207 208 2.768253 AGACGAAACATGCCATCTGA 57.232 45.000 0.00 0.00 0.00 3.27
208 209 3.057969 AGACGAAACATGCCATCTGAA 57.942 42.857 0.00 0.00 0.00 3.02
209 210 3.411446 AGACGAAACATGCCATCTGAAA 58.589 40.909 0.00 0.00 0.00 2.69
210 211 3.820467 AGACGAAACATGCCATCTGAAAA 59.180 39.130 0.00 0.00 0.00 2.29
211 212 4.278170 AGACGAAACATGCCATCTGAAAAA 59.722 37.500 0.00 0.00 0.00 1.94
252 253 8.788325 ACAACTAAAATTGTCACCCTAGTATC 57.212 34.615 0.00 0.00 38.44 2.24
253 254 8.380099 ACAACTAAAATTGTCACCCTAGTATCA 58.620 33.333 0.00 0.00 38.44 2.15
254 255 8.665685 CAACTAAAATTGTCACCCTAGTATCAC 58.334 37.037 0.00 0.00 0.00 3.06
255 256 8.147244 ACTAAAATTGTCACCCTAGTATCACT 57.853 34.615 0.00 0.00 0.00 3.41
256 257 9.263446 ACTAAAATTGTCACCCTAGTATCACTA 57.737 33.333 0.00 0.00 0.00 2.74
259 260 8.788325 AAATTGTCACCCTAGTATCACTAAAC 57.212 34.615 0.00 0.00 29.00 2.01
260 261 7.735326 ATTGTCACCCTAGTATCACTAAACT 57.265 36.000 0.00 0.00 29.00 2.66
261 262 7.549147 TTGTCACCCTAGTATCACTAAACTT 57.451 36.000 0.00 0.00 29.00 2.66
262 263 6.931838 TGTCACCCTAGTATCACTAAACTTG 58.068 40.000 0.00 0.00 29.00 3.16
263 264 5.811100 GTCACCCTAGTATCACTAAACTTGC 59.189 44.000 0.00 0.00 29.00 4.01
264 265 5.105064 TCACCCTAGTATCACTAAACTTGCC 60.105 44.000 0.00 0.00 29.00 4.52
265 266 4.781087 ACCCTAGTATCACTAAACTTGCCA 59.219 41.667 0.00 0.00 29.00 4.92
266 267 5.428783 ACCCTAGTATCACTAAACTTGCCAT 59.571 40.000 0.00 0.00 29.00 4.40
267 268 6.614087 ACCCTAGTATCACTAAACTTGCCATA 59.386 38.462 0.00 0.00 29.00 2.74
268 269 7.126726 ACCCTAGTATCACTAAACTTGCCATAA 59.873 37.037 0.00 0.00 29.00 1.90
269 270 7.990886 CCCTAGTATCACTAAACTTGCCATAAA 59.009 37.037 0.00 0.00 29.00 1.40
270 271 9.391006 CCTAGTATCACTAAACTTGCCATAAAA 57.609 33.333 0.00 0.00 29.00 1.52
274 275 9.855021 GTATCACTAAACTTGCCATAAAAATGT 57.145 29.630 0.00 0.00 0.00 2.71
276 277 8.810652 TCACTAAACTTGCCATAAAAATGTTC 57.189 30.769 0.00 0.00 0.00 3.18
277 278 8.417106 TCACTAAACTTGCCATAAAAATGTTCA 58.583 29.630 0.00 0.00 0.00 3.18
278 279 9.039870 CACTAAACTTGCCATAAAAATGTTCAA 57.960 29.630 0.00 0.00 0.00 2.69
279 280 9.606631 ACTAAACTTGCCATAAAAATGTTCAAA 57.393 25.926 0.00 0.00 0.00 2.69
281 282 8.504812 AAACTTGCCATAAAAATGTTCAAAGT 57.495 26.923 0.00 0.00 0.00 2.66
282 283 8.504812 AACTTGCCATAAAAATGTTCAAAGTT 57.495 26.923 0.00 0.00 0.00 2.66
283 284 7.918643 ACTTGCCATAAAAATGTTCAAAGTTG 58.081 30.769 0.00 0.00 0.00 3.16
284 285 7.552330 ACTTGCCATAAAAATGTTCAAAGTTGT 59.448 29.630 0.00 0.00 0.00 3.32
285 286 7.475771 TGCCATAAAAATGTTCAAAGTTGTC 57.524 32.000 0.00 0.00 0.00 3.18
286 287 7.044181 TGCCATAAAAATGTTCAAAGTTGTCA 58.956 30.769 0.00 0.00 0.00 3.58
287 288 7.714377 TGCCATAAAAATGTTCAAAGTTGTCAT 59.286 29.630 0.00 0.00 0.00 3.06
288 289 8.011106 GCCATAAAAATGTTCAAAGTTGTCATG 58.989 33.333 0.00 0.00 0.00 3.07
289 290 9.044150 CCATAAAAATGTTCAAAGTTGTCATGT 57.956 29.630 0.00 0.00 0.00 3.21
290 291 9.852481 CATAAAAATGTTCAAAGTTGTCATGTG 57.148 29.630 0.00 0.00 0.00 3.21
291 292 7.903995 AAAAATGTTCAAAGTTGTCATGTGT 57.096 28.000 0.00 0.00 0.00 3.72
292 293 7.903995 AAAATGTTCAAAGTTGTCATGTGTT 57.096 28.000 0.00 1.20 0.00 3.32
293 294 7.524294 AAATGTTCAAAGTTGTCATGTGTTC 57.476 32.000 0.00 0.00 0.00 3.18
294 295 5.635417 TGTTCAAAGTTGTCATGTGTTCA 57.365 34.783 0.00 0.00 0.00 3.18
295 296 6.206395 TGTTCAAAGTTGTCATGTGTTCAT 57.794 33.333 0.00 0.00 34.21 2.57
303 304 0.873721 TCATGTGTTCATGCCACACG 59.126 50.000 16.96 11.25 46.47 4.49
304 305 0.592637 CATGTGTTCATGCCACACGT 59.407 50.000 16.96 15.42 46.47 4.49
305 306 0.592637 ATGTGTTCATGCCACACGTG 59.407 50.000 15.48 15.48 46.47 4.49
306 307 0.746204 TGTGTTCATGCCACACGTGT 60.746 50.000 17.22 17.22 46.47 4.49
307 308 0.316937 GTGTTCATGCCACACGTGTG 60.317 55.000 36.13 36.13 45.23 3.82
319 320 4.475763 CACACGTGTGGCACTTATTAAA 57.524 40.909 35.65 0.00 42.10 1.52
320 321 4.463209 CACACGTGTGGCACTTATTAAAG 58.537 43.478 35.65 9.45 42.10 1.85
321 322 4.024387 CACACGTGTGGCACTTATTAAAGT 60.024 41.667 35.65 2.62 43.12 2.66
322 323 5.177881 CACACGTGTGGCACTTATTAAAGTA 59.822 40.000 35.65 0.00 41.81 2.24
323 324 5.178067 ACACGTGTGGCACTTATTAAAGTAC 59.822 40.000 22.71 3.30 38.20 2.73
324 325 5.177881 CACGTGTGGCACTTATTAAAGTACA 59.822 40.000 19.83 0.00 44.28 2.90
325 326 5.759273 ACGTGTGGCACTTATTAAAGTACAA 59.241 36.000 19.83 0.00 44.28 2.41
326 327 6.260493 ACGTGTGGCACTTATTAAAGTACAAA 59.740 34.615 19.83 0.00 44.28 2.83
327 328 7.133513 CGTGTGGCACTTATTAAAGTACAAAA 58.866 34.615 19.83 0.00 44.28 2.44
328 329 7.806014 CGTGTGGCACTTATTAAAGTACAAAAT 59.194 33.333 19.83 0.00 44.28 1.82
329 330 9.124807 GTGTGGCACTTATTAAAGTACAAAATC 57.875 33.333 19.83 0.00 44.28 2.17
330 331 8.851145 TGTGGCACTTATTAAAGTACAAAATCA 58.149 29.630 19.83 0.00 44.28 2.57
331 332 9.685828 GTGGCACTTATTAAAGTACAAAATCAA 57.314 29.630 11.13 0.00 44.28 2.57
358 359 6.573664 ATTGACCAATGAAATGAAACGAGA 57.426 33.333 0.00 0.00 0.00 4.04
359 360 6.573664 TTGACCAATGAAATGAAACGAGAT 57.426 33.333 0.00 0.00 0.00 2.75
360 361 5.941733 TGACCAATGAAATGAAACGAGATG 58.058 37.500 0.00 0.00 0.00 2.90
361 362 5.704978 TGACCAATGAAATGAAACGAGATGA 59.295 36.000 0.00 0.00 0.00 2.92
362 363 6.375174 TGACCAATGAAATGAAACGAGATGAT 59.625 34.615 0.00 0.00 0.00 2.45
363 364 7.094248 TGACCAATGAAATGAAACGAGATGATT 60.094 33.333 0.00 0.00 0.00 2.57
364 365 8.279970 ACCAATGAAATGAAACGAGATGATTA 57.720 30.769 0.00 0.00 0.00 1.75
365 366 8.906867 ACCAATGAAATGAAACGAGATGATTAT 58.093 29.630 0.00 0.00 0.00 1.28
366 367 9.740239 CCAATGAAATGAAACGAGATGATTATT 57.260 29.630 0.00 0.00 0.00 1.40
373 374 9.722056 AATGAAACGAGATGATTATTGTAAAGC 57.278 29.630 0.00 0.00 0.00 3.51
374 375 7.693952 TGAAACGAGATGATTATTGTAAAGCC 58.306 34.615 0.00 0.00 0.00 4.35
375 376 7.552687 TGAAACGAGATGATTATTGTAAAGCCT 59.447 33.333 0.00 0.00 0.00 4.58
376 377 6.851222 ACGAGATGATTATTGTAAAGCCTG 57.149 37.500 0.00 0.00 0.00 4.85
377 378 6.349300 ACGAGATGATTATTGTAAAGCCTGT 58.651 36.000 0.00 0.00 0.00 4.00
378 379 6.480320 ACGAGATGATTATTGTAAAGCCTGTC 59.520 38.462 0.00 0.00 0.00 3.51
379 380 6.703607 CGAGATGATTATTGTAAAGCCTGTCT 59.296 38.462 0.00 0.00 0.00 3.41
380 381 7.867909 CGAGATGATTATTGTAAAGCCTGTCTA 59.132 37.037 0.00 0.00 0.00 2.59
381 382 8.894768 AGATGATTATTGTAAAGCCTGTCTAC 57.105 34.615 0.00 0.00 0.00 2.59
382 383 8.709308 AGATGATTATTGTAAAGCCTGTCTACT 58.291 33.333 0.00 0.00 0.00 2.57
383 384 9.982651 GATGATTATTGTAAAGCCTGTCTACTA 57.017 33.333 0.00 0.00 0.00 1.82
384 385 9.765795 ATGATTATTGTAAAGCCTGTCTACTAC 57.234 33.333 0.00 0.00 0.00 2.73
385 386 8.978472 TGATTATTGTAAAGCCTGTCTACTACT 58.022 33.333 0.00 0.00 0.00 2.57
386 387 9.819267 GATTATTGTAAAGCCTGTCTACTACTT 57.181 33.333 0.00 0.00 0.00 2.24
387 388 9.819267 ATTATTGTAAAGCCTGTCTACTACTTC 57.181 33.333 0.00 0.00 0.00 3.01
388 389 5.656213 TGTAAAGCCTGTCTACTACTTCC 57.344 43.478 0.00 0.00 0.00 3.46
389 390 5.331069 TGTAAAGCCTGTCTACTACTTCCT 58.669 41.667 0.00 0.00 0.00 3.36
390 391 5.778750 TGTAAAGCCTGTCTACTACTTCCTT 59.221 40.000 0.00 0.00 0.00 3.36
391 392 5.827326 AAAGCCTGTCTACTACTTCCTTT 57.173 39.130 0.00 0.00 0.00 3.11
392 393 5.408880 AAGCCTGTCTACTACTTCCTTTC 57.591 43.478 0.00 0.00 0.00 2.62
393 394 4.417437 AGCCTGTCTACTACTTCCTTTCA 58.583 43.478 0.00 0.00 0.00 2.69
394 395 4.838986 AGCCTGTCTACTACTTCCTTTCAA 59.161 41.667 0.00 0.00 0.00 2.69
395 396 4.930405 GCCTGTCTACTACTTCCTTTCAAC 59.070 45.833 0.00 0.00 0.00 3.18
396 397 5.510861 GCCTGTCTACTACTTCCTTTCAACA 60.511 44.000 0.00 0.00 0.00 3.33
397 398 5.927115 CCTGTCTACTACTTCCTTTCAACAC 59.073 44.000 0.00 0.00 0.00 3.32
398 399 5.526115 TGTCTACTACTTCCTTTCAACACG 58.474 41.667 0.00 0.00 0.00 4.49
399 400 5.300034 TGTCTACTACTTCCTTTCAACACGA 59.700 40.000 0.00 0.00 0.00 4.35
400 401 6.015688 TGTCTACTACTTCCTTTCAACACGAT 60.016 38.462 0.00 0.00 0.00 3.73
401 402 6.308282 GTCTACTACTTCCTTTCAACACGATG 59.692 42.308 0.00 0.00 0.00 3.84
402 403 5.209818 ACTACTTCCTTTCAACACGATGA 57.790 39.130 0.00 0.00 0.00 2.92
403 404 5.607477 ACTACTTCCTTTCAACACGATGAA 58.393 37.500 0.00 0.00 37.53 2.57
404 405 5.696724 ACTACTTCCTTTCAACACGATGAAG 59.303 40.000 0.00 0.00 40.21 3.02
405 406 3.251004 ACTTCCTTTCAACACGATGAAGC 59.749 43.478 0.00 0.00 40.21 3.86
406 407 2.151202 TCCTTTCAACACGATGAAGCC 58.849 47.619 0.00 0.00 40.21 4.35
407 408 1.879380 CCTTTCAACACGATGAAGCCA 59.121 47.619 0.00 0.00 40.21 4.75
408 409 2.095567 CCTTTCAACACGATGAAGCCAG 60.096 50.000 0.00 0.00 40.21 4.85
409 410 2.254546 TTCAACACGATGAAGCCAGT 57.745 45.000 0.00 0.00 34.50 4.00
410 411 2.254546 TCAACACGATGAAGCCAGTT 57.745 45.000 0.00 0.00 0.00 3.16
411 412 1.872952 TCAACACGATGAAGCCAGTTG 59.127 47.619 0.00 0.00 38.08 3.16
412 413 0.593128 AACACGATGAAGCCAGTTGC 59.407 50.000 0.00 0.00 41.71 4.17
413 414 0.534877 ACACGATGAAGCCAGTTGCA 60.535 50.000 0.00 0.00 44.83 4.08
414 415 0.592637 CACGATGAAGCCAGTTGCAA 59.407 50.000 0.00 0.00 44.83 4.08
415 416 1.200716 CACGATGAAGCCAGTTGCAAT 59.799 47.619 0.59 0.00 44.83 3.56
416 417 1.470098 ACGATGAAGCCAGTTGCAATC 59.530 47.619 0.59 0.00 44.83 2.67
417 418 1.530441 CGATGAAGCCAGTTGCAATCG 60.530 52.381 0.59 0.01 44.83 3.34
418 419 0.813184 ATGAAGCCAGTTGCAATCGG 59.187 50.000 0.59 7.63 44.83 4.18
419 420 1.153958 GAAGCCAGTTGCAATCGGC 60.154 57.895 26.43 26.43 44.83 5.54
428 429 4.954933 GCAATCGGCAACCCTCTA 57.045 55.556 0.00 0.00 43.97 2.43
429 430 3.168773 GCAATCGGCAACCCTCTAA 57.831 52.632 0.00 0.00 43.97 2.10
430 431 0.733150 GCAATCGGCAACCCTCTAAC 59.267 55.000 0.00 0.00 43.97 2.34
431 432 1.679032 GCAATCGGCAACCCTCTAACT 60.679 52.381 0.00 0.00 43.97 2.24
432 433 2.711542 CAATCGGCAACCCTCTAACTT 58.288 47.619 0.00 0.00 0.00 2.66
433 434 3.869065 CAATCGGCAACCCTCTAACTTA 58.131 45.455 0.00 0.00 0.00 2.24
434 435 4.451900 CAATCGGCAACCCTCTAACTTAT 58.548 43.478 0.00 0.00 0.00 1.73
435 436 5.607477 CAATCGGCAACCCTCTAACTTATA 58.393 41.667 0.00 0.00 0.00 0.98
436 437 4.660789 TCGGCAACCCTCTAACTTATAC 57.339 45.455 0.00 0.00 0.00 1.47
437 438 4.284178 TCGGCAACCCTCTAACTTATACT 58.716 43.478 0.00 0.00 0.00 2.12
438 439 4.713321 TCGGCAACCCTCTAACTTATACTT 59.287 41.667 0.00 0.00 0.00 2.24
439 440 4.809426 CGGCAACCCTCTAACTTATACTTG 59.191 45.833 0.00 0.00 0.00 3.16
440 441 5.626116 CGGCAACCCTCTAACTTATACTTGT 60.626 44.000 0.00 0.00 0.00 3.16
441 442 5.585047 GGCAACCCTCTAACTTATACTTGTG 59.415 44.000 0.00 0.00 0.00 3.33
442 443 6.171213 GCAACCCTCTAACTTATACTTGTGT 58.829 40.000 0.00 0.00 0.00 3.72
443 444 6.313164 GCAACCCTCTAACTTATACTTGTGTC 59.687 42.308 0.00 0.00 0.00 3.67
444 445 7.383687 CAACCCTCTAACTTATACTTGTGTCA 58.616 38.462 0.00 0.00 0.00 3.58
445 446 7.735326 ACCCTCTAACTTATACTTGTGTCAT 57.265 36.000 0.00 0.00 0.00 3.06
446 447 8.147244 ACCCTCTAACTTATACTTGTGTCATT 57.853 34.615 0.00 0.00 0.00 2.57
447 448 8.258708 ACCCTCTAACTTATACTTGTGTCATTC 58.741 37.037 0.00 0.00 0.00 2.67
448 449 7.711339 CCCTCTAACTTATACTTGTGTCATTCC 59.289 40.741 0.00 0.00 0.00 3.01
449 450 8.478877 CCTCTAACTTATACTTGTGTCATTCCT 58.521 37.037 0.00 0.00 0.00 3.36
450 451 9.877178 CTCTAACTTATACTTGTGTCATTCCTT 57.123 33.333 0.00 0.00 0.00 3.36
535 536 9.926158 ATAAAGCAAAATGAATGAATGTACACA 57.074 25.926 0.00 0.00 0.00 3.72
536 537 7.642071 AAGCAAAATGAATGAATGTACACAC 57.358 32.000 0.00 0.00 0.00 3.82
537 538 6.985117 AGCAAAATGAATGAATGTACACACT 58.015 32.000 0.00 0.00 0.00 3.55
538 539 8.109705 AGCAAAATGAATGAATGTACACACTA 57.890 30.769 0.00 0.00 0.00 2.74
539 540 8.575589 AGCAAAATGAATGAATGTACACACTAA 58.424 29.630 0.00 0.00 0.00 2.24
540 541 9.190858 GCAAAATGAATGAATGTACACACTAAA 57.809 29.630 0.00 0.00 0.00 1.85
578 579 7.479980 ACATTCGTATGTGGTATTTCATTTGG 58.520 34.615 6.89 0.00 43.29 3.28
579 580 7.338196 ACATTCGTATGTGGTATTTCATTTGGA 59.662 33.333 6.89 0.00 43.29 3.53
580 581 7.689446 TTCGTATGTGGTATTTCATTTGGAA 57.311 32.000 0.00 0.00 0.00 3.53
581 582 7.079182 TCGTATGTGGTATTTCATTTGGAAC 57.921 36.000 0.00 0.00 34.56 3.62
582 583 6.094325 TCGTATGTGGTATTTCATTTGGAACC 59.906 38.462 0.00 0.00 34.56 3.62
583 584 5.675684 ATGTGGTATTTCATTTGGAACCC 57.324 39.130 0.00 0.00 34.56 4.11
584 585 4.746466 TGTGGTATTTCATTTGGAACCCT 58.254 39.130 0.00 0.00 34.56 4.34
585 586 5.893500 TGTGGTATTTCATTTGGAACCCTA 58.106 37.500 0.00 0.00 34.56 3.53
586 587 6.315714 TGTGGTATTTCATTTGGAACCCTAA 58.684 36.000 0.00 0.00 34.56 2.69
587 588 6.782988 TGTGGTATTTCATTTGGAACCCTAAA 59.217 34.615 0.00 0.00 34.56 1.85
588 589 7.290248 TGTGGTATTTCATTTGGAACCCTAAAA 59.710 33.333 0.00 0.00 34.56 1.52
589 590 7.817478 GTGGTATTTCATTTGGAACCCTAAAAG 59.183 37.037 0.00 0.00 34.56 2.27
590 591 7.730784 TGGTATTTCATTTGGAACCCTAAAAGA 59.269 33.333 0.00 0.00 34.56 2.52
591 592 8.033038 GGTATTTCATTTGGAACCCTAAAAGAC 58.967 37.037 0.00 0.00 34.56 3.01
592 593 7.610580 ATTTCATTTGGAACCCTAAAAGACA 57.389 32.000 0.00 0.00 34.56 3.41
593 594 7.425224 TTTCATTTGGAACCCTAAAAGACAA 57.575 32.000 0.00 0.00 34.56 3.18
594 595 7.425224 TTCATTTGGAACCCTAAAAGACAAA 57.575 32.000 0.00 0.00 0.00 2.83
595 596 7.610580 TCATTTGGAACCCTAAAAGACAAAT 57.389 32.000 0.00 0.00 37.49 2.32
596 597 8.713708 TCATTTGGAACCCTAAAAGACAAATA 57.286 30.769 0.00 0.00 35.88 1.40
597 598 9.320295 TCATTTGGAACCCTAAAAGACAAATAT 57.680 29.630 0.00 0.00 35.88 1.28
598 599 9.942850 CATTTGGAACCCTAAAAGACAAATATT 57.057 29.630 0.00 0.00 35.88 1.28
600 601 8.713708 TTGGAACCCTAAAAGACAAATATTCA 57.286 30.769 0.00 0.00 0.00 2.57
601 602 8.348285 TGGAACCCTAAAAGACAAATATTCAG 57.652 34.615 0.00 0.00 0.00 3.02
602 603 8.167392 TGGAACCCTAAAAGACAAATATTCAGA 58.833 33.333 0.00 0.00 0.00 3.27
603 604 9.020731 GGAACCCTAAAAGACAAATATTCAGAA 57.979 33.333 0.00 0.00 0.00 3.02
606 607 8.512138 ACCCTAAAAGACAAATATTCAGAAACG 58.488 33.333 0.00 0.00 0.00 3.60
607 608 7.968405 CCCTAAAAGACAAATATTCAGAAACGG 59.032 37.037 0.00 0.00 0.00 4.44
608 609 8.726988 CCTAAAAGACAAATATTCAGAAACGGA 58.273 33.333 0.00 0.00 0.00 4.69
609 610 9.760660 CTAAAAGACAAATATTCAGAAACGGAG 57.239 33.333 0.00 0.00 0.00 4.63
610 611 6.743575 AAGACAAATATTCAGAAACGGAGG 57.256 37.500 0.00 0.00 0.00 4.30
611 612 5.186198 AGACAAATATTCAGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
612 613 5.045869 AGACAAATATTCAGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
613 614 5.186198 ACAAATATTCAGAAACGGAGGGAG 58.814 41.667 0.00 0.00 0.00 4.30
614 615 5.186198 CAAATATTCAGAAACGGAGGGAGT 58.814 41.667 0.00 0.00 0.00 3.85
615 616 6.070424 ACAAATATTCAGAAACGGAGGGAGTA 60.070 38.462 0.00 0.00 0.00 2.59
616 617 6.749036 AATATTCAGAAACGGAGGGAGTAT 57.251 37.500 0.00 0.00 0.00 2.12
617 618 7.850935 AATATTCAGAAACGGAGGGAGTATA 57.149 36.000 0.00 0.00 0.00 1.47
618 619 8.437274 AATATTCAGAAACGGAGGGAGTATAT 57.563 34.615 0.00 0.00 0.00 0.86
619 620 6.749036 ATTCAGAAACGGAGGGAGTATATT 57.251 37.500 0.00 0.00 0.00 1.28
620 621 6.555463 TTCAGAAACGGAGGGAGTATATTT 57.445 37.500 0.00 0.00 0.00 1.40
621 622 6.555463 TCAGAAACGGAGGGAGTATATTTT 57.445 37.500 0.00 0.00 0.00 1.82
622 623 7.664552 TCAGAAACGGAGGGAGTATATTTTA 57.335 36.000 0.00 0.00 0.00 1.52
680 683 6.750775 AAACTTCTAGACGAAAGAAAGTCG 57.249 37.500 2.78 0.00 44.10 4.18
749 753 2.394708 CACCGTGGATATAGAAGCACG 58.605 52.381 0.00 0.00 36.04 5.34
771 775 1.800713 GAAAGAGTCGACCGCGGAC 60.801 63.158 35.90 26.45 38.28 4.79
779 784 3.195698 GACCGCGGACATGCTTCC 61.196 66.667 35.90 4.89 0.00 3.46
788 793 1.546029 GGACATGCTTCCCTTTGGTTC 59.454 52.381 0.00 0.00 0.00 3.62
970 984 3.373226 CGGAGACCCAACGGAGAA 58.627 61.111 0.00 0.00 0.00 2.87
975 989 0.905337 AGACCCAACGGAGAAGGGAG 60.905 60.000 3.32 0.00 45.19 4.30
977 991 2.670148 CCCAACGGAGAAGGGAGGG 61.670 68.421 0.00 0.00 45.19 4.30
978 992 2.670148 CCAACGGAGAAGGGAGGGG 61.670 68.421 0.00 0.00 0.00 4.79
979 993 1.612442 CAACGGAGAAGGGAGGGGA 60.612 63.158 0.00 0.00 0.00 4.81
1023 1037 2.835431 CGCGTCCTCCCTCTGGAT 60.835 66.667 0.00 0.00 40.80 3.41
1125 1154 2.329339 GCTCGGATTTCGCCATGC 59.671 61.111 0.00 0.00 39.05 4.06
1140 1169 3.367630 CGCCATGCTTGTTGTTTTTATCC 59.632 43.478 0.00 0.00 0.00 2.59
1376 1407 1.544724 TGGCCAGCTTGGTTAATGTC 58.455 50.000 0.00 0.00 40.46 3.06
1385 1416 6.458210 CAGCTTGGTTAATGTCATCCTTTTT 58.542 36.000 0.00 0.00 0.00 1.94
1387 1418 5.869344 GCTTGGTTAATGTCATCCTTTTTCC 59.131 40.000 0.00 0.00 0.00 3.13
1395 1428 4.750941 TGTCATCCTTTTTCCCCATTCTT 58.249 39.130 0.00 0.00 0.00 2.52
1399 1432 3.165071 TCCTTTTTCCCCATTCTTGCTC 58.835 45.455 0.00 0.00 0.00 4.26
1405 1446 2.184533 TCCCCATTCTTGCTCGTCTAA 58.815 47.619 0.00 0.00 0.00 2.10
1414 1455 4.957296 TCTTGCTCGTCTAATAAATCCCC 58.043 43.478 0.00 0.00 0.00 4.81
1416 1457 2.067013 GCTCGTCTAATAAATCCCCGC 58.933 52.381 0.00 0.00 0.00 6.13
1423 1464 4.285260 GTCTAATAAATCCCCGCCTCCTTA 59.715 45.833 0.00 0.00 0.00 2.69
1430 1471 4.529716 ATCCCCGCCTCCTTAAAAATTA 57.470 40.909 0.00 0.00 0.00 1.40
1439 1481 7.148656 CCGCCTCCTTAAAAATTATTGTTTGTG 60.149 37.037 0.00 0.00 0.00 3.33
1453 1495 6.822667 ATTGTTTGTGCATCTCATAGACAA 57.177 33.333 0.00 1.64 42.16 3.18
1454 1496 6.631971 TTGTTTGTGCATCTCATAGACAAA 57.368 33.333 0.00 0.00 37.74 2.83
1455 1497 6.631971 TGTTTGTGCATCTCATAGACAAAA 57.368 33.333 0.00 0.00 38.04 2.44
1456 1498 7.218228 TGTTTGTGCATCTCATAGACAAAAT 57.782 32.000 0.00 0.00 38.04 1.82
1458 1500 8.791675 TGTTTGTGCATCTCATAGACAAAATAA 58.208 29.630 0.00 0.00 38.04 1.40
1505 1565 7.221452 CCATATCTGCACTTTTTAGTTTGATGC 59.779 37.037 0.00 0.00 0.00 3.91
1522 1582 4.344865 CGTGGGGTGAGGTTGGGG 62.345 72.222 0.00 0.00 0.00 4.96
1572 1641 7.073342 AGGGTTTCGAAAGATTTAAGAATCG 57.927 36.000 11.66 0.00 45.10 3.34
1575 1647 7.270579 GGGTTTCGAAAGATTTAAGAATCGTTG 59.729 37.037 11.66 0.00 45.10 4.10
1609 1681 9.770097 AACTTATGAGTATGTTACATCCTGATG 57.230 33.333 0.00 5.60 38.83 3.07
1772 1897 1.710013 AACAGGTGTCGCATTACTCG 58.290 50.000 0.00 0.00 0.00 4.18
1877 2006 7.854916 GCTGCTTTTAACTATCATGATTCAGTC 59.145 37.037 14.65 0.30 0.00 3.51
2421 2748 0.912486 AGAAGGTGGGTGCTGATACC 59.088 55.000 0.00 0.00 40.10 2.73
2440 2767 9.643693 CTGATACCTTCTGTGCAAAATAAAATT 57.356 29.630 0.00 0.00 0.00 1.82
2480 2810 0.107508 TAGGCAGCTCACTGGAATGC 60.108 55.000 0.00 0.00 44.63 3.56
2501 2831 3.866449 GCCAGTCGACTTCCATTCTTCTT 60.866 47.826 17.26 0.00 0.00 2.52
2524 2854 6.055231 TGTTACCTTTCACTGAATTTCACG 57.945 37.500 0.00 0.00 0.00 4.35
2591 2923 2.572556 TCGGTAGTTAGCCATTTTGGGA 59.427 45.455 0.00 0.00 38.19 4.37
2616 2948 5.412594 TGTGATCTTTTGCTTGGTCTGTATC 59.587 40.000 0.00 0.00 0.00 2.24
2627 2959 1.272769 GGTCTGTATCGGTCCATAGGC 59.727 57.143 0.00 0.00 0.00 3.93
2727 3062 6.649141 AGTCGTTATCACACTGCTCATTTTTA 59.351 34.615 0.00 0.00 0.00 1.52
2756 3091 8.877864 TTGGTTGTCCTTCAATATACTTGAAT 57.122 30.769 9.37 0.00 37.72 2.57
2757 3092 9.967451 TTGGTTGTCCTTCAATATACTTGAATA 57.033 29.630 9.37 2.31 37.72 1.75
2758 3093 9.613428 TGGTTGTCCTTCAATATACTTGAATAG 57.387 33.333 9.37 6.32 37.72 1.73
2759 3094 8.560374 GGTTGTCCTTCAATATACTTGAATAGC 58.440 37.037 9.37 0.00 37.72 2.97
2760 3095 9.109393 GTTGTCCTTCAATATACTTGAATAGCA 57.891 33.333 9.37 7.08 37.72 3.49
2761 3096 8.893219 TGTCCTTCAATATACTTGAATAGCAG 57.107 34.615 9.37 1.51 37.72 4.24
2762 3097 8.486210 TGTCCTTCAATATACTTGAATAGCAGT 58.514 33.333 9.37 0.00 37.72 4.40
2763 3098 9.982651 GTCCTTCAATATACTTGAATAGCAGTA 57.017 33.333 9.37 0.00 37.72 2.74
2868 3204 6.927936 GCTTAGATCTCAAGCATATGTTCAGA 59.072 38.462 21.85 4.31 46.17 3.27
2871 3207 6.514947 AGATCTCAAGCATATGTTCAGAGTC 58.485 40.000 16.26 13.70 0.00 3.36
2884 3220 5.376625 TGTTCAGAGTCCAGCTTGTAATTT 58.623 37.500 0.00 0.00 0.00 1.82
2886 3222 6.017109 TGTTCAGAGTCCAGCTTGTAATTTTC 60.017 38.462 0.00 0.00 0.00 2.29
2926 3273 7.833682 ACACCATTGACATGAATATTCTGGTTA 59.166 33.333 16.54 9.42 32.36 2.85
2986 3333 5.734220 GCATATGTGGCATACTGAACTTTGG 60.734 44.000 4.29 0.00 0.00 3.28
3062 3411 6.092122 GCTATGTTGTGCATGTGTACTCTTTA 59.908 38.462 0.00 0.00 38.47 1.85
3168 3520 5.888691 TTCTTGTGTTTGTTACTTGCAGA 57.111 34.783 0.00 0.00 0.00 4.26
3365 3717 1.004745 ACTACTCTTGGCATGGTTGGG 59.995 52.381 0.00 0.00 0.00 4.12
3413 3765 3.422546 GCGAGCGACTACATGTAAGATTC 59.577 47.826 7.06 0.87 0.00 2.52
3470 3829 7.978975 AGCTGTGTCTTAATATCTTCTCTGTTC 59.021 37.037 0.00 0.00 0.00 3.18
3759 4121 9.574516 AGATTATGGATTTACTAAATTCCGCTT 57.425 29.630 0.00 0.00 37.77 4.68
3880 4254 5.391629 GCCGATCGTTAACCAATTCTTTTCT 60.392 40.000 15.09 0.00 0.00 2.52
4113 4994 6.920758 GCATAAGTTGACTACAGTGGAGATAG 59.079 42.308 10.09 0.00 0.00 2.08
4429 5381 5.723672 TTTACTACTCCCTCTGTTCACTG 57.276 43.478 0.00 0.00 0.00 3.66
4433 5385 5.334421 ACTACTCCCTCTGTTCACTGTTAT 58.666 41.667 0.00 0.00 0.00 1.89
4439 5391 3.865745 CCTCTGTTCACTGTTATAAGGCG 59.134 47.826 0.00 0.00 0.00 5.52
4461 5414 2.283086 TGTAGACGTGCAAAACAACTCG 59.717 45.455 0.00 0.00 0.00 4.18
4505 5510 2.467566 TAAAAGTGAACGGAGGGAGC 57.532 50.000 0.00 0.00 0.00 4.70
4603 5993 8.348507 CCTTCTCTTGAGGTGCATATATTTTTC 58.651 37.037 0.00 0.00 0.00 2.29
4689 7030 0.586319 GCGTGTCTAAGCTTTGTGCA 59.414 50.000 3.20 4.12 45.94 4.57
4863 7205 7.966246 TTTTCATTTTAGCTGCACATCAATT 57.034 28.000 1.02 0.00 0.00 2.32
4870 7228 0.521867 CTGCACATCAATTGCGGTCG 60.522 55.000 0.00 0.00 43.34 4.79
4873 7231 0.521291 CACATCAATTGCGGTCGGTT 59.479 50.000 0.00 0.00 0.00 4.44
4884 7242 1.662026 GCGGTCGGTTGATTTTCACAC 60.662 52.381 0.00 0.00 0.00 3.82
4887 7245 2.288458 GGTCGGTTGATTTTCACACGAA 59.712 45.455 0.00 0.00 36.81 3.85
4908 7266 0.036294 GGAGGAACAACGGAGGGAAG 60.036 60.000 0.00 0.00 0.00 3.46
4923 7281 1.003233 GAAGGAAGGAGCTTGCCGT 60.003 57.895 0.00 0.00 32.16 5.68
5270 7628 2.134201 GTTTGCCGGAGAAAAACTGG 57.866 50.000 5.05 0.00 36.91 4.00
5273 7631 4.492604 CCGGAGAAAAACTGGCCA 57.507 55.556 4.71 4.71 0.00 5.36
5274 7632 2.961424 CCGGAGAAAAACTGGCCAT 58.039 52.632 5.51 0.00 0.00 4.40
5275 7633 1.256812 CCGGAGAAAAACTGGCCATT 58.743 50.000 5.51 0.00 0.00 3.16
5276 7634 1.067635 CCGGAGAAAAACTGGCCATTG 60.068 52.381 5.51 0.00 0.00 2.82
5277 7635 1.669795 CGGAGAAAAACTGGCCATTGC 60.670 52.381 5.51 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.422100 GTGATAGTGAGTTTCATATCGTGCAT 59.578 38.462 0.00 0.00 0.00 3.96
1 2 5.748630 GTGATAGTGAGTTTCATATCGTGCA 59.251 40.000 0.00 0.00 0.00 4.57
2 3 5.748630 TGTGATAGTGAGTTTCATATCGTGC 59.251 40.000 0.00 0.00 0.00 5.34
3 4 6.419116 CCTGTGATAGTGAGTTTCATATCGTG 59.581 42.308 0.00 0.00 0.00 4.35
4 5 6.507900 CCTGTGATAGTGAGTTTCATATCGT 58.492 40.000 0.00 0.00 0.00 3.73
5 6 5.403766 GCCTGTGATAGTGAGTTTCATATCG 59.596 44.000 0.00 0.00 0.00 2.92
6 7 6.283694 TGCCTGTGATAGTGAGTTTCATATC 58.716 40.000 0.00 0.00 0.00 1.63
7 8 6.239217 TGCCTGTGATAGTGAGTTTCATAT 57.761 37.500 0.00 0.00 0.00 1.78
8 9 5.675684 TGCCTGTGATAGTGAGTTTCATA 57.324 39.130 0.00 0.00 0.00 2.15
9 10 4.558226 TGCCTGTGATAGTGAGTTTCAT 57.442 40.909 0.00 0.00 0.00 2.57
10 11 4.350368 TTGCCTGTGATAGTGAGTTTCA 57.650 40.909 0.00 0.00 0.00 2.69
11 12 5.886960 ATTTGCCTGTGATAGTGAGTTTC 57.113 39.130 0.00 0.00 0.00 2.78
12 13 6.265196 TGAAATTTGCCTGTGATAGTGAGTTT 59.735 34.615 0.00 0.00 0.00 2.66
13 14 5.769662 TGAAATTTGCCTGTGATAGTGAGTT 59.230 36.000 0.00 0.00 0.00 3.01
14 15 5.316167 TGAAATTTGCCTGTGATAGTGAGT 58.684 37.500 0.00 0.00 0.00 3.41
15 16 5.885230 TGAAATTTGCCTGTGATAGTGAG 57.115 39.130 0.00 0.00 0.00 3.51
16 17 6.040278 TGTTTGAAATTTGCCTGTGATAGTGA 59.960 34.615 0.00 0.00 0.00 3.41
17 18 6.215121 TGTTTGAAATTTGCCTGTGATAGTG 58.785 36.000 0.00 0.00 0.00 2.74
18 19 6.403866 TGTTTGAAATTTGCCTGTGATAGT 57.596 33.333 0.00 0.00 0.00 2.12
19 20 6.925165 ACTTGTTTGAAATTTGCCTGTGATAG 59.075 34.615 0.00 0.00 0.00 2.08
20 21 6.700960 CACTTGTTTGAAATTTGCCTGTGATA 59.299 34.615 0.00 0.00 0.00 2.15
21 22 5.524646 CACTTGTTTGAAATTTGCCTGTGAT 59.475 36.000 0.00 0.00 0.00 3.06
22 23 4.869297 CACTTGTTTGAAATTTGCCTGTGA 59.131 37.500 0.00 0.00 0.00 3.58
23 24 4.494526 GCACTTGTTTGAAATTTGCCTGTG 60.495 41.667 0.00 0.00 0.00 3.66
24 25 3.622612 GCACTTGTTTGAAATTTGCCTGT 59.377 39.130 0.00 0.00 0.00 4.00
25 26 3.622163 TGCACTTGTTTGAAATTTGCCTG 59.378 39.130 0.00 0.00 0.00 4.85
26 27 3.622612 GTGCACTTGTTTGAAATTTGCCT 59.377 39.130 10.32 0.00 0.00 4.75
27 28 3.373439 TGTGCACTTGTTTGAAATTTGCC 59.627 39.130 19.41 0.00 0.00 4.52
28 29 4.596801 TGTGCACTTGTTTGAAATTTGC 57.403 36.364 19.41 0.00 0.00 3.68
29 30 7.802251 TCTTTTTGTGCACTTGTTTGAAATTTG 59.198 29.630 19.41 2.44 0.00 2.32
30 31 7.869800 TCTTTTTGTGCACTTGTTTGAAATTT 58.130 26.923 19.41 0.00 0.00 1.82
31 32 7.432350 TCTTTTTGTGCACTTGTTTGAAATT 57.568 28.000 19.41 0.00 0.00 1.82
32 33 7.432350 TTCTTTTTGTGCACTTGTTTGAAAT 57.568 28.000 19.41 0.00 0.00 2.17
33 34 6.851222 TTCTTTTTGTGCACTTGTTTGAAA 57.149 29.167 19.41 5.26 0.00 2.69
34 35 7.432350 AATTCTTTTTGTGCACTTGTTTGAA 57.568 28.000 19.41 14.59 0.00 2.69
35 36 8.715191 ATAATTCTTTTTGTGCACTTGTTTGA 57.285 26.923 19.41 6.66 0.00 2.69
37 38 9.816354 ACTATAATTCTTTTTGTGCACTTGTTT 57.184 25.926 19.41 3.92 0.00 2.83
53 54 9.672673 AGCAACATGTCAACTTACTATAATTCT 57.327 29.630 0.00 0.00 0.00 2.40
54 55 9.708222 CAGCAACATGTCAACTTACTATAATTC 57.292 33.333 0.00 0.00 0.00 2.17
55 56 8.184192 GCAGCAACATGTCAACTTACTATAATT 58.816 33.333 0.00 0.00 0.00 1.40
56 57 7.336679 TGCAGCAACATGTCAACTTACTATAAT 59.663 33.333 0.00 0.00 0.00 1.28
57 58 6.652900 TGCAGCAACATGTCAACTTACTATAA 59.347 34.615 0.00 0.00 0.00 0.98
58 59 6.169800 TGCAGCAACATGTCAACTTACTATA 58.830 36.000 0.00 0.00 0.00 1.31
59 60 5.003160 TGCAGCAACATGTCAACTTACTAT 58.997 37.500 0.00 0.00 0.00 2.12
60 61 4.384940 TGCAGCAACATGTCAACTTACTA 58.615 39.130 0.00 0.00 0.00 1.82
61 62 3.213506 TGCAGCAACATGTCAACTTACT 58.786 40.909 0.00 0.00 0.00 2.24
62 63 3.624326 TGCAGCAACATGTCAACTTAC 57.376 42.857 0.00 0.00 0.00 2.34
63 64 4.645762 TTTGCAGCAACATGTCAACTTA 57.354 36.364 7.54 0.00 0.00 2.24
64 65 3.523606 TTTGCAGCAACATGTCAACTT 57.476 38.095 7.54 0.00 0.00 2.66
65 66 3.523606 TTTTGCAGCAACATGTCAACT 57.476 38.095 7.54 0.00 0.00 3.16
66 67 4.799419 ATTTTTGCAGCAACATGTCAAC 57.201 36.364 7.54 0.00 0.00 3.18
67 68 6.238320 GGTTTATTTTTGCAGCAACATGTCAA 60.238 34.615 7.54 0.00 0.00 3.18
68 69 5.236047 GGTTTATTTTTGCAGCAACATGTCA 59.764 36.000 7.54 0.00 0.00 3.58
69 70 5.334028 GGGTTTATTTTTGCAGCAACATGTC 60.334 40.000 7.54 0.00 0.00 3.06
70 71 4.514816 GGGTTTATTTTTGCAGCAACATGT 59.485 37.500 7.54 0.00 0.00 3.21
71 72 4.514441 TGGGTTTATTTTTGCAGCAACATG 59.486 37.500 7.54 0.00 0.00 3.21
72 73 4.712476 TGGGTTTATTTTTGCAGCAACAT 58.288 34.783 7.54 5.79 0.00 2.71
73 74 4.142609 TGGGTTTATTTTTGCAGCAACA 57.857 36.364 7.54 0.00 0.00 3.33
74 75 5.491635 TTTGGGTTTATTTTTGCAGCAAC 57.508 34.783 7.54 0.00 0.00 4.17
75 76 7.992754 ATATTTGGGTTTATTTTTGCAGCAA 57.007 28.000 2.83 2.83 0.00 3.91
76 77 7.992754 AATATTTGGGTTTATTTTTGCAGCA 57.007 28.000 0.00 0.00 0.00 4.41
77 78 9.986833 CTTAATATTTGGGTTTATTTTTGCAGC 57.013 29.630 0.00 0.00 0.00 5.25
89 90 9.528489 ACAAGTATGACACTTAATATTTGGGTT 57.472 29.630 0.00 0.00 46.04 4.11
90 91 8.956426 CACAAGTATGACACTTAATATTTGGGT 58.044 33.333 0.00 0.00 46.04 4.51
91 92 8.405531 CCACAAGTATGACACTTAATATTTGGG 58.594 37.037 0.00 0.00 46.04 4.12
92 93 8.956426 ACCACAAGTATGACACTTAATATTTGG 58.044 33.333 0.00 0.00 46.04 3.28
95 96 9.309516 CGTACCACAAGTATGACACTTAATATT 57.690 33.333 0.00 0.00 46.04 1.28
96 97 8.689061 TCGTACCACAAGTATGACACTTAATAT 58.311 33.333 0.00 0.00 46.04 1.28
97 98 8.054152 TCGTACCACAAGTATGACACTTAATA 57.946 34.615 0.00 0.00 46.04 0.98
98 99 6.927416 TCGTACCACAAGTATGACACTTAAT 58.073 36.000 0.00 0.00 46.04 1.40
99 100 6.330004 TCGTACCACAAGTATGACACTTAA 57.670 37.500 0.00 0.00 46.04 1.85
100 101 5.963176 TCGTACCACAAGTATGACACTTA 57.037 39.130 0.00 0.00 46.04 2.24
102 103 4.806330 CTTCGTACCACAAGTATGACACT 58.194 43.478 0.00 0.00 44.84 3.55
103 104 3.367025 GCTTCGTACCACAAGTATGACAC 59.633 47.826 0.00 0.00 44.84 3.67
104 105 3.006003 TGCTTCGTACCACAAGTATGACA 59.994 43.478 0.00 0.00 44.84 3.58
105 106 3.367025 GTGCTTCGTACCACAAGTATGAC 59.633 47.826 0.00 0.00 44.84 3.06
106 107 3.257375 AGTGCTTCGTACCACAAGTATGA 59.743 43.478 3.33 0.00 43.75 2.15
107 108 3.585862 AGTGCTTCGTACCACAAGTATG 58.414 45.455 3.33 0.00 39.04 2.39
108 109 3.368116 GGAGTGCTTCGTACCACAAGTAT 60.368 47.826 3.33 0.00 34.48 2.12
109 110 2.029649 GGAGTGCTTCGTACCACAAGTA 60.030 50.000 3.33 0.00 34.48 2.24
110 111 1.270147 GGAGTGCTTCGTACCACAAGT 60.270 52.381 3.33 0.00 34.48 3.16
111 112 1.429463 GGAGTGCTTCGTACCACAAG 58.571 55.000 3.33 0.00 34.48 3.16
112 113 0.319211 CGGAGTGCTTCGTACCACAA 60.319 55.000 3.33 0.00 34.48 3.33
113 114 1.174078 TCGGAGTGCTTCGTACCACA 61.174 55.000 0.00 0.00 34.48 4.17
114 115 0.731855 GTCGGAGTGCTTCGTACCAC 60.732 60.000 0.00 0.00 0.00 4.16
115 116 1.174078 TGTCGGAGTGCTTCGTACCA 61.174 55.000 0.00 0.00 0.00 3.25
116 117 0.172803 ATGTCGGAGTGCTTCGTACC 59.827 55.000 0.00 0.00 0.00 3.34
117 118 1.654105 CAATGTCGGAGTGCTTCGTAC 59.346 52.381 0.00 0.00 0.00 3.67
118 119 1.542472 TCAATGTCGGAGTGCTTCGTA 59.458 47.619 0.00 0.00 0.00 3.43
119 120 0.317160 TCAATGTCGGAGTGCTTCGT 59.683 50.000 0.00 0.00 0.00 3.85
120 121 0.994995 CTCAATGTCGGAGTGCTTCG 59.005 55.000 0.00 0.00 0.00 3.79
121 122 1.338200 ACCTCAATGTCGGAGTGCTTC 60.338 52.381 0.00 0.00 0.00 3.86
122 123 0.687354 ACCTCAATGTCGGAGTGCTT 59.313 50.000 0.00 0.00 0.00 3.91
123 124 0.687354 AACCTCAATGTCGGAGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
124 125 1.523758 AAACCTCAATGTCGGAGTGC 58.476 50.000 0.00 0.00 0.00 4.40
142 143 8.338072 TCGGATGGTAGCTTTATTTGTAAAAA 57.662 30.769 0.00 0.00 0.00 1.94
143 144 7.925043 TCGGATGGTAGCTTTATTTGTAAAA 57.075 32.000 0.00 0.00 0.00 1.52
144 145 7.925043 TTCGGATGGTAGCTTTATTTGTAAA 57.075 32.000 0.00 0.00 0.00 2.01
145 146 7.925043 TTTCGGATGGTAGCTTTATTTGTAA 57.075 32.000 0.00 0.00 0.00 2.41
146 147 7.825270 TCTTTTCGGATGGTAGCTTTATTTGTA 59.175 33.333 0.00 0.00 0.00 2.41
147 148 6.657541 TCTTTTCGGATGGTAGCTTTATTTGT 59.342 34.615 0.00 0.00 0.00 2.83
148 149 7.083875 TCTTTTCGGATGGTAGCTTTATTTG 57.916 36.000 0.00 0.00 0.00 2.32
149 150 7.696992 TTCTTTTCGGATGGTAGCTTTATTT 57.303 32.000 0.00 0.00 0.00 1.40
150 151 7.696992 TTTCTTTTCGGATGGTAGCTTTATT 57.303 32.000 0.00 0.00 0.00 1.40
151 152 7.696992 TTTTCTTTTCGGATGGTAGCTTTAT 57.303 32.000 0.00 0.00 0.00 1.40
152 153 7.013464 TGTTTTTCTTTTCGGATGGTAGCTTTA 59.987 33.333 0.00 0.00 0.00 1.85
153 154 6.183360 TGTTTTTCTTTTCGGATGGTAGCTTT 60.183 34.615 0.00 0.00 0.00 3.51
154 155 5.300792 TGTTTTTCTTTTCGGATGGTAGCTT 59.699 36.000 0.00 0.00 0.00 3.74
155 156 4.825085 TGTTTTTCTTTTCGGATGGTAGCT 59.175 37.500 0.00 0.00 0.00 3.32
156 157 5.116069 TGTTTTTCTTTTCGGATGGTAGC 57.884 39.130 0.00 0.00 0.00 3.58
157 158 6.975772 TGTTTGTTTTTCTTTTCGGATGGTAG 59.024 34.615 0.00 0.00 0.00 3.18
158 159 6.864342 TGTTTGTTTTTCTTTTCGGATGGTA 58.136 32.000 0.00 0.00 0.00 3.25
159 160 5.725362 TGTTTGTTTTTCTTTTCGGATGGT 58.275 33.333 0.00 0.00 0.00 3.55
160 161 6.654793 TTGTTTGTTTTTCTTTTCGGATGG 57.345 33.333 0.00 0.00 0.00 3.51
161 162 8.941127 TTTTTGTTTGTTTTTCTTTTCGGATG 57.059 26.923 0.00 0.00 0.00 3.51
184 185 4.278170 TCAGATGGCATGTTTCGTCTTTTT 59.722 37.500 3.81 0.00 0.00 1.94
185 186 3.820467 TCAGATGGCATGTTTCGTCTTTT 59.180 39.130 3.81 0.00 0.00 2.27
186 187 3.411446 TCAGATGGCATGTTTCGTCTTT 58.589 40.909 3.81 0.00 0.00 2.52
187 188 3.057969 TCAGATGGCATGTTTCGTCTT 57.942 42.857 3.81 0.00 0.00 3.01
188 189 2.768253 TCAGATGGCATGTTTCGTCT 57.232 45.000 3.81 0.00 0.00 4.18
189 190 3.829886 TTTCAGATGGCATGTTTCGTC 57.170 42.857 3.81 0.00 0.00 4.20
190 191 4.582701 TTTTTCAGATGGCATGTTTCGT 57.417 36.364 3.81 0.00 0.00 3.85
227 228 8.380099 TGATACTAGGGTGACAATTTTAGTTGT 58.620 33.333 0.00 0.00 44.53 3.32
228 229 8.665685 GTGATACTAGGGTGACAATTTTAGTTG 58.334 37.037 0.00 0.00 35.25 3.16
229 230 8.603304 AGTGATACTAGGGTGACAATTTTAGTT 58.397 33.333 0.00 0.00 0.00 2.24
230 231 8.147244 AGTGATACTAGGGTGACAATTTTAGT 57.853 34.615 0.00 0.00 0.00 2.24
233 234 9.227777 GTTTAGTGATACTAGGGTGACAATTTT 57.772 33.333 0.00 0.00 31.47 1.82
234 235 8.603304 AGTTTAGTGATACTAGGGTGACAATTT 58.397 33.333 0.00 0.00 31.47 1.82
235 236 8.147244 AGTTTAGTGATACTAGGGTGACAATT 57.853 34.615 0.00 0.00 31.47 2.32
236 237 7.735326 AGTTTAGTGATACTAGGGTGACAAT 57.265 36.000 0.00 0.00 31.47 2.71
237 238 7.383687 CAAGTTTAGTGATACTAGGGTGACAA 58.616 38.462 0.00 0.00 31.47 3.18
238 239 6.573680 GCAAGTTTAGTGATACTAGGGTGACA 60.574 42.308 0.00 0.00 31.47 3.58
239 240 5.811100 GCAAGTTTAGTGATACTAGGGTGAC 59.189 44.000 0.00 0.00 31.47 3.67
240 241 5.105064 GGCAAGTTTAGTGATACTAGGGTGA 60.105 44.000 0.00 0.00 31.47 4.02
241 242 5.116882 GGCAAGTTTAGTGATACTAGGGTG 58.883 45.833 0.00 0.00 31.47 4.61
242 243 4.781087 TGGCAAGTTTAGTGATACTAGGGT 59.219 41.667 0.00 0.00 31.47 4.34
243 244 5.353394 TGGCAAGTTTAGTGATACTAGGG 57.647 43.478 0.00 0.00 31.47 3.53
244 245 8.958119 TTTATGGCAAGTTTAGTGATACTAGG 57.042 34.615 0.00 0.00 31.47 3.02
248 249 9.855021 ACATTTTTATGGCAAGTTTAGTGATAC 57.145 29.630 0.00 0.00 0.00 2.24
250 251 9.423061 GAACATTTTTATGGCAAGTTTAGTGAT 57.577 29.630 0.00 0.00 0.00 3.06
251 252 8.417106 TGAACATTTTTATGGCAAGTTTAGTGA 58.583 29.630 0.00 0.00 0.00 3.41
252 253 8.586570 TGAACATTTTTATGGCAAGTTTAGTG 57.413 30.769 0.00 0.00 0.00 2.74
253 254 9.606631 TTTGAACATTTTTATGGCAAGTTTAGT 57.393 25.926 0.00 0.00 0.00 2.24
255 256 9.606631 ACTTTGAACATTTTTATGGCAAGTTTA 57.393 25.926 0.00 0.00 0.00 2.01
256 257 8.504812 ACTTTGAACATTTTTATGGCAAGTTT 57.495 26.923 0.00 0.00 0.00 2.66
257 258 8.397148 CAACTTTGAACATTTTTATGGCAAGTT 58.603 29.630 0.00 0.00 0.00 2.66
258 259 7.552330 ACAACTTTGAACATTTTTATGGCAAGT 59.448 29.630 0.00 0.00 0.00 3.16
259 260 7.918643 ACAACTTTGAACATTTTTATGGCAAG 58.081 30.769 0.00 0.00 0.00 4.01
260 261 7.550551 TGACAACTTTGAACATTTTTATGGCAA 59.449 29.630 0.00 0.00 0.00 4.52
261 262 7.044181 TGACAACTTTGAACATTTTTATGGCA 58.956 30.769 0.00 0.00 0.00 4.92
262 263 7.475771 TGACAACTTTGAACATTTTTATGGC 57.524 32.000 0.00 0.00 0.00 4.40
263 264 9.044150 ACATGACAACTTTGAACATTTTTATGG 57.956 29.630 0.00 0.00 31.19 2.74
264 265 9.852481 CACATGACAACTTTGAACATTTTTATG 57.148 29.630 0.00 0.00 31.19 1.90
265 266 9.598517 ACACATGACAACTTTGAACATTTTTAT 57.401 25.926 0.00 0.00 31.19 1.40
266 267 8.994429 ACACATGACAACTTTGAACATTTTTA 57.006 26.923 0.00 0.00 31.19 1.52
267 268 7.903995 ACACATGACAACTTTGAACATTTTT 57.096 28.000 0.00 0.00 31.19 1.94
268 269 7.601886 TGAACACATGACAACTTTGAACATTTT 59.398 29.630 0.00 0.00 31.19 1.82
269 270 7.095910 TGAACACATGACAACTTTGAACATTT 58.904 30.769 0.00 0.00 31.19 2.32
270 271 6.629128 TGAACACATGACAACTTTGAACATT 58.371 32.000 0.00 0.00 31.19 2.71
271 272 6.206395 TGAACACATGACAACTTTGAACAT 57.794 33.333 0.00 0.00 32.65 2.71
272 273 5.635417 TGAACACATGACAACTTTGAACA 57.365 34.783 0.00 0.00 0.00 3.18
273 274 5.051508 GCATGAACACATGACAACTTTGAAC 60.052 40.000 13.30 0.00 42.56 3.18
274 275 5.042593 GCATGAACACATGACAACTTTGAA 58.957 37.500 13.30 0.00 42.56 2.69
275 276 4.499526 GGCATGAACACATGACAACTTTGA 60.500 41.667 13.30 0.00 46.05 2.69
276 277 3.737266 GGCATGAACACATGACAACTTTG 59.263 43.478 13.30 0.00 46.05 2.77
277 278 3.981211 GGCATGAACACATGACAACTTT 58.019 40.909 13.30 0.00 46.05 2.66
278 279 3.648339 GGCATGAACACATGACAACTT 57.352 42.857 13.30 0.00 46.05 2.66
287 288 0.746204 ACACGTGTGGCATGAACACA 60.746 50.000 22.71 20.49 46.68 3.72
288 289 0.316937 CACACGTGTGGCATGAACAC 60.317 55.000 35.65 17.64 43.62 3.32
289 290 2.020926 CACACGTGTGGCATGAACA 58.979 52.632 35.65 0.00 42.10 3.18
290 291 4.920662 CACACGTGTGGCATGAAC 57.079 55.556 35.65 0.00 42.10 3.18
298 299 4.024387 ACTTTAATAAGTGCCACACGTGTG 60.024 41.667 36.13 36.13 42.91 3.82
299 300 4.131596 ACTTTAATAAGTGCCACACGTGT 58.868 39.130 17.22 17.22 42.91 4.49
300 301 4.742438 ACTTTAATAAGTGCCACACGTG 57.258 40.909 15.48 15.48 42.91 4.49
301 302 5.299148 TGTACTTTAATAAGTGCCACACGT 58.701 37.500 0.00 0.00 43.76 4.49
302 303 5.849357 TGTACTTTAATAAGTGCCACACG 57.151 39.130 0.00 0.00 43.76 4.49
303 304 9.124807 GATTTTGTACTTTAATAAGTGCCACAC 57.875 33.333 0.00 0.00 43.76 3.82
304 305 8.851145 TGATTTTGTACTTTAATAAGTGCCACA 58.149 29.630 0.00 0.00 43.76 4.17
305 306 9.685828 TTGATTTTGTACTTTAATAAGTGCCAC 57.314 29.630 0.00 0.00 43.76 5.01
315 316 9.535878 GGTCAATGGTTTGATTTTGTACTTTAA 57.464 29.630 0.00 0.00 43.49 1.52
316 317 8.696374 TGGTCAATGGTTTGATTTTGTACTTTA 58.304 29.630 0.00 0.00 43.49 1.85
317 318 7.560368 TGGTCAATGGTTTGATTTTGTACTTT 58.440 30.769 0.00 0.00 43.49 2.66
318 319 7.118496 TGGTCAATGGTTTGATTTTGTACTT 57.882 32.000 0.00 0.00 43.49 2.24
319 320 6.723298 TGGTCAATGGTTTGATTTTGTACT 57.277 33.333 0.00 0.00 43.49 2.73
320 321 7.655328 TCATTGGTCAATGGTTTGATTTTGTAC 59.345 33.333 19.67 0.00 46.08 2.90
321 322 7.730084 TCATTGGTCAATGGTTTGATTTTGTA 58.270 30.769 19.67 0.00 46.08 2.41
322 323 6.590068 TCATTGGTCAATGGTTTGATTTTGT 58.410 32.000 19.67 0.00 46.08 2.83
323 324 7.493743 TTCATTGGTCAATGGTTTGATTTTG 57.506 32.000 19.67 0.00 46.08 2.44
324 325 8.569641 CATTTCATTGGTCAATGGTTTGATTTT 58.430 29.630 19.67 0.00 46.08 1.82
325 326 7.937942 TCATTTCATTGGTCAATGGTTTGATTT 59.062 29.630 19.67 0.00 46.08 2.17
326 327 7.451732 TCATTTCATTGGTCAATGGTTTGATT 58.548 30.769 19.67 1.16 46.08 2.57
327 328 7.006865 TCATTTCATTGGTCAATGGTTTGAT 57.993 32.000 19.67 7.62 46.08 2.57
328 329 6.416631 TCATTTCATTGGTCAATGGTTTGA 57.583 33.333 19.67 16.25 46.08 2.69
329 330 7.354257 GTTTCATTTCATTGGTCAATGGTTTG 58.646 34.615 19.67 14.77 46.08 2.93
330 331 6.202570 CGTTTCATTTCATTGGTCAATGGTTT 59.797 34.615 19.67 5.86 46.08 3.27
331 332 5.695816 CGTTTCATTTCATTGGTCAATGGTT 59.304 36.000 19.67 6.14 46.08 3.67
332 333 5.010516 TCGTTTCATTTCATTGGTCAATGGT 59.989 36.000 19.67 7.33 46.08 3.55
333 334 5.468592 TCGTTTCATTTCATTGGTCAATGG 58.531 37.500 19.67 7.35 46.08 3.16
335 336 6.573664 TCTCGTTTCATTTCATTGGTCAAT 57.426 33.333 0.00 0.00 0.00 2.57
336 337 6.206438 TCATCTCGTTTCATTTCATTGGTCAA 59.794 34.615 0.00 0.00 0.00 3.18
337 338 5.704978 TCATCTCGTTTCATTTCATTGGTCA 59.295 36.000 0.00 0.00 0.00 4.02
338 339 6.182039 TCATCTCGTTTCATTTCATTGGTC 57.818 37.500 0.00 0.00 0.00 4.02
339 340 6.764308 ATCATCTCGTTTCATTTCATTGGT 57.236 33.333 0.00 0.00 0.00 3.67
340 341 9.740239 AATAATCATCTCGTTTCATTTCATTGG 57.260 29.630 0.00 0.00 0.00 3.16
347 348 9.722056 GCTTTACAATAATCATCTCGTTTCATT 57.278 29.630 0.00 0.00 0.00 2.57
348 349 8.345565 GGCTTTACAATAATCATCTCGTTTCAT 58.654 33.333 0.00 0.00 0.00 2.57
349 350 7.552687 AGGCTTTACAATAATCATCTCGTTTCA 59.447 33.333 0.00 0.00 0.00 2.69
350 351 7.852945 CAGGCTTTACAATAATCATCTCGTTTC 59.147 37.037 0.00 0.00 0.00 2.78
351 352 7.336931 ACAGGCTTTACAATAATCATCTCGTTT 59.663 33.333 0.00 0.00 0.00 3.60
352 353 6.823689 ACAGGCTTTACAATAATCATCTCGTT 59.176 34.615 0.00 0.00 0.00 3.85
353 354 6.349300 ACAGGCTTTACAATAATCATCTCGT 58.651 36.000 0.00 0.00 0.00 4.18
354 355 6.703607 AGACAGGCTTTACAATAATCATCTCG 59.296 38.462 0.00 0.00 0.00 4.04
355 356 8.983724 GTAGACAGGCTTTACAATAATCATCTC 58.016 37.037 0.00 0.00 0.00 2.75
356 357 8.709308 AGTAGACAGGCTTTACAATAATCATCT 58.291 33.333 0.00 0.00 0.00 2.90
357 358 8.894768 AGTAGACAGGCTTTACAATAATCATC 57.105 34.615 0.00 0.00 0.00 2.92
358 359 9.765795 GTAGTAGACAGGCTTTACAATAATCAT 57.234 33.333 0.00 0.00 0.00 2.45
359 360 8.978472 AGTAGTAGACAGGCTTTACAATAATCA 58.022 33.333 0.00 0.00 0.00 2.57
360 361 9.819267 AAGTAGTAGACAGGCTTTACAATAATC 57.181 33.333 0.00 0.00 0.00 1.75
361 362 9.819267 GAAGTAGTAGACAGGCTTTACAATAAT 57.181 33.333 0.00 0.00 0.00 1.28
362 363 8.255905 GGAAGTAGTAGACAGGCTTTACAATAA 58.744 37.037 0.00 0.00 0.00 1.40
363 364 7.618512 AGGAAGTAGTAGACAGGCTTTACAATA 59.381 37.037 0.00 0.00 0.00 1.90
364 365 6.440965 AGGAAGTAGTAGACAGGCTTTACAAT 59.559 38.462 0.00 0.00 0.00 2.71
365 366 5.778750 AGGAAGTAGTAGACAGGCTTTACAA 59.221 40.000 0.00 0.00 0.00 2.41
366 367 5.331069 AGGAAGTAGTAGACAGGCTTTACA 58.669 41.667 0.00 0.00 0.00 2.41
367 368 5.918426 AGGAAGTAGTAGACAGGCTTTAC 57.082 43.478 0.00 0.00 0.00 2.01
368 369 6.495872 TGAAAGGAAGTAGTAGACAGGCTTTA 59.504 38.462 0.00 0.00 0.00 1.85
369 370 5.307196 TGAAAGGAAGTAGTAGACAGGCTTT 59.693 40.000 0.00 0.00 0.00 3.51
370 371 4.838986 TGAAAGGAAGTAGTAGACAGGCTT 59.161 41.667 0.00 0.00 0.00 4.35
371 372 4.417437 TGAAAGGAAGTAGTAGACAGGCT 58.583 43.478 0.00 0.00 0.00 4.58
372 373 4.803098 TGAAAGGAAGTAGTAGACAGGC 57.197 45.455 0.00 0.00 0.00 4.85
373 374 5.927115 GTGTTGAAAGGAAGTAGTAGACAGG 59.073 44.000 0.00 0.00 0.00 4.00
374 375 5.629849 CGTGTTGAAAGGAAGTAGTAGACAG 59.370 44.000 0.00 0.00 0.00 3.51
375 376 5.300034 TCGTGTTGAAAGGAAGTAGTAGACA 59.700 40.000 0.00 0.00 0.00 3.41
376 377 5.766222 TCGTGTTGAAAGGAAGTAGTAGAC 58.234 41.667 0.00 0.00 0.00 2.59
377 378 6.208007 TCATCGTGTTGAAAGGAAGTAGTAGA 59.792 38.462 0.00 0.00 0.00 2.59
378 379 6.387465 TCATCGTGTTGAAAGGAAGTAGTAG 58.613 40.000 0.00 0.00 0.00 2.57
379 380 6.335471 TCATCGTGTTGAAAGGAAGTAGTA 57.665 37.500 0.00 0.00 0.00 1.82
380 381 5.209818 TCATCGTGTTGAAAGGAAGTAGT 57.790 39.130 0.00 0.00 0.00 2.73
381 382 5.389935 GCTTCATCGTGTTGAAAGGAAGTAG 60.390 44.000 0.00 0.00 36.49 2.57
382 383 4.451096 GCTTCATCGTGTTGAAAGGAAGTA 59.549 41.667 0.00 0.00 36.49 2.24
383 384 3.251004 GCTTCATCGTGTTGAAAGGAAGT 59.749 43.478 0.00 0.00 36.49 3.01
384 385 3.365364 GGCTTCATCGTGTTGAAAGGAAG 60.365 47.826 0.00 0.00 35.31 3.46
385 386 2.552315 GGCTTCATCGTGTTGAAAGGAA 59.448 45.455 0.00 0.00 35.31 3.36
386 387 2.151202 GGCTTCATCGTGTTGAAAGGA 58.849 47.619 0.00 0.00 35.31 3.36
387 388 1.879380 TGGCTTCATCGTGTTGAAAGG 59.121 47.619 0.00 0.00 35.31 3.11
388 389 2.549754 ACTGGCTTCATCGTGTTGAAAG 59.450 45.455 0.00 0.00 35.31 2.62
389 390 2.571212 ACTGGCTTCATCGTGTTGAAA 58.429 42.857 0.00 0.00 35.31 2.69
390 391 2.254546 ACTGGCTTCATCGTGTTGAA 57.745 45.000 0.00 0.00 34.55 2.69
391 392 1.872952 CAACTGGCTTCATCGTGTTGA 59.127 47.619 0.00 0.00 37.53 3.18
392 393 1.664016 GCAACTGGCTTCATCGTGTTG 60.664 52.381 0.00 0.00 40.25 3.33
393 394 0.593128 GCAACTGGCTTCATCGTGTT 59.407 50.000 0.00 0.00 40.25 3.32
394 395 0.534877 TGCAACTGGCTTCATCGTGT 60.535 50.000 0.00 0.00 45.15 4.49
395 396 0.592637 TTGCAACTGGCTTCATCGTG 59.407 50.000 0.00 0.00 45.15 4.35
396 397 1.470098 GATTGCAACTGGCTTCATCGT 59.530 47.619 0.00 0.00 45.15 3.73
397 398 1.530441 CGATTGCAACTGGCTTCATCG 60.530 52.381 0.00 0.00 45.15 3.84
398 399 1.202222 CCGATTGCAACTGGCTTCATC 60.202 52.381 0.00 0.00 45.15 2.92
399 400 0.813184 CCGATTGCAACTGGCTTCAT 59.187 50.000 0.00 0.00 45.15 2.57
400 401 1.865788 GCCGATTGCAACTGGCTTCA 61.866 55.000 27.95 0.00 44.16 3.02
401 402 1.153958 GCCGATTGCAACTGGCTTC 60.154 57.895 27.95 10.30 44.16 3.86
402 403 2.964978 GCCGATTGCAACTGGCTT 59.035 55.556 27.95 2.14 44.16 4.35
411 412 0.733150 GTTAGAGGGTTGCCGATTGC 59.267 55.000 0.00 0.00 41.77 3.56
412 413 2.403252 AGTTAGAGGGTTGCCGATTG 57.597 50.000 0.00 0.00 0.00 2.67
413 414 4.772886 ATAAGTTAGAGGGTTGCCGATT 57.227 40.909 0.00 0.00 0.00 3.34
414 415 4.900054 AGTATAAGTTAGAGGGTTGCCGAT 59.100 41.667 0.00 0.00 0.00 4.18
415 416 4.284178 AGTATAAGTTAGAGGGTTGCCGA 58.716 43.478 0.00 0.00 0.00 5.54
416 417 4.667519 AGTATAAGTTAGAGGGTTGCCG 57.332 45.455 0.00 0.00 0.00 5.69
417 418 5.585047 CACAAGTATAAGTTAGAGGGTTGCC 59.415 44.000 0.00 0.00 0.00 4.52
418 419 6.171213 ACACAAGTATAAGTTAGAGGGTTGC 58.829 40.000 0.00 0.00 0.00 4.17
419 420 7.383687 TGACACAAGTATAAGTTAGAGGGTTG 58.616 38.462 0.00 0.00 0.00 3.77
420 421 7.549147 TGACACAAGTATAAGTTAGAGGGTT 57.451 36.000 0.00 0.00 0.00 4.11
421 422 7.735326 ATGACACAAGTATAAGTTAGAGGGT 57.265 36.000 0.00 0.00 0.00 4.34
422 423 7.711339 GGAATGACACAAGTATAAGTTAGAGGG 59.289 40.741 0.00 0.00 0.00 4.30
423 424 8.478877 AGGAATGACACAAGTATAAGTTAGAGG 58.521 37.037 0.00 0.00 0.00 3.69
424 425 9.877178 AAGGAATGACACAAGTATAAGTTAGAG 57.123 33.333 0.00 0.00 0.00 2.43
509 510 9.926158 TGTGTACATTCATTCATTTTGCTTTAT 57.074 25.926 0.00 0.00 0.00 1.40
510 511 9.190858 GTGTGTACATTCATTCATTTTGCTTTA 57.809 29.630 0.00 0.00 0.00 1.85
511 512 7.927629 AGTGTGTACATTCATTCATTTTGCTTT 59.072 29.630 0.00 0.00 0.00 3.51
512 513 7.436118 AGTGTGTACATTCATTCATTTTGCTT 58.564 30.769 0.00 0.00 0.00 3.91
513 514 6.985117 AGTGTGTACATTCATTCATTTTGCT 58.015 32.000 0.00 0.00 0.00 3.91
514 515 8.741101 TTAGTGTGTACATTCATTCATTTTGC 57.259 30.769 0.00 0.00 0.00 3.68
552 553 8.616942 CCAAATGAAATACCACATACGAATGTA 58.383 33.333 0.00 0.00 44.70 2.29
554 555 7.702386 TCCAAATGAAATACCACATACGAATG 58.298 34.615 0.00 0.00 39.17 2.67
555 556 7.873719 TCCAAATGAAATACCACATACGAAT 57.126 32.000 0.00 0.00 0.00 3.34
556 557 7.362229 GGTTCCAAATGAAATACCACATACGAA 60.362 37.037 0.00 0.00 33.94 3.85
557 558 6.094325 GGTTCCAAATGAAATACCACATACGA 59.906 38.462 0.00 0.00 33.94 3.43
558 559 6.262601 GGTTCCAAATGAAATACCACATACG 58.737 40.000 0.00 0.00 33.94 3.06
559 560 6.379988 AGGGTTCCAAATGAAATACCACATAC 59.620 38.462 0.00 0.00 33.94 2.39
560 561 6.498538 AGGGTTCCAAATGAAATACCACATA 58.501 36.000 0.00 0.00 33.94 2.29
561 562 5.341169 AGGGTTCCAAATGAAATACCACAT 58.659 37.500 0.00 0.00 33.94 3.21
562 563 4.746466 AGGGTTCCAAATGAAATACCACA 58.254 39.130 0.00 0.00 33.94 4.17
563 564 6.844097 TTAGGGTTCCAAATGAAATACCAC 57.156 37.500 0.00 0.00 33.94 4.16
564 565 7.730784 TCTTTTAGGGTTCCAAATGAAATACCA 59.269 33.333 0.00 0.00 33.94 3.25
565 566 8.033038 GTCTTTTAGGGTTCCAAATGAAATACC 58.967 37.037 0.00 0.00 33.94 2.73
566 567 8.581578 TGTCTTTTAGGGTTCCAAATGAAATAC 58.418 33.333 0.00 0.00 33.94 1.89
567 568 8.713708 TGTCTTTTAGGGTTCCAAATGAAATA 57.286 30.769 0.00 0.00 33.94 1.40
568 569 7.610580 TGTCTTTTAGGGTTCCAAATGAAAT 57.389 32.000 0.00 0.00 33.94 2.17
569 570 7.425224 TTGTCTTTTAGGGTTCCAAATGAAA 57.575 32.000 0.00 0.00 33.94 2.69
570 571 7.425224 TTTGTCTTTTAGGGTTCCAAATGAA 57.575 32.000 0.00 0.00 0.00 2.57
571 572 7.610580 ATTTGTCTTTTAGGGTTCCAAATGA 57.389 32.000 0.00 0.00 31.81 2.57
572 573 9.942850 AATATTTGTCTTTTAGGGTTCCAAATG 57.057 29.630 0.00 0.00 34.15 2.32
574 575 9.148879 TGAATATTTGTCTTTTAGGGTTCCAAA 57.851 29.630 0.00 0.00 0.00 3.28
575 576 8.713708 TGAATATTTGTCTTTTAGGGTTCCAA 57.286 30.769 0.00 0.00 0.00 3.53
576 577 8.167392 TCTGAATATTTGTCTTTTAGGGTTCCA 58.833 33.333 0.00 0.00 0.00 3.53
577 578 8.575649 TCTGAATATTTGTCTTTTAGGGTTCC 57.424 34.615 0.00 0.00 0.00 3.62
580 581 8.512138 CGTTTCTGAATATTTGTCTTTTAGGGT 58.488 33.333 0.00 0.00 0.00 4.34
581 582 7.968405 CCGTTTCTGAATATTTGTCTTTTAGGG 59.032 37.037 0.00 0.00 0.00 3.53
582 583 8.726988 TCCGTTTCTGAATATTTGTCTTTTAGG 58.273 33.333 0.00 0.00 0.00 2.69
583 584 9.760660 CTCCGTTTCTGAATATTTGTCTTTTAG 57.239 33.333 0.00 0.00 0.00 1.85
584 585 8.726988 CCTCCGTTTCTGAATATTTGTCTTTTA 58.273 33.333 0.00 0.00 0.00 1.52
585 586 7.309194 CCCTCCGTTTCTGAATATTTGTCTTTT 60.309 37.037 0.00 0.00 0.00 2.27
586 587 6.151144 CCCTCCGTTTCTGAATATTTGTCTTT 59.849 38.462 0.00 0.00 0.00 2.52
587 588 5.648092 CCCTCCGTTTCTGAATATTTGTCTT 59.352 40.000 0.00 0.00 0.00 3.01
588 589 5.045869 TCCCTCCGTTTCTGAATATTTGTCT 60.046 40.000 0.00 0.00 0.00 3.41
589 590 5.183228 TCCCTCCGTTTCTGAATATTTGTC 58.817 41.667 0.00 0.00 0.00 3.18
590 591 5.174037 TCCCTCCGTTTCTGAATATTTGT 57.826 39.130 0.00 0.00 0.00 2.83
591 592 5.186198 ACTCCCTCCGTTTCTGAATATTTG 58.814 41.667 0.00 0.00 0.00 2.32
592 593 5.437191 ACTCCCTCCGTTTCTGAATATTT 57.563 39.130 0.00 0.00 0.00 1.40
593 594 6.749036 ATACTCCCTCCGTTTCTGAATATT 57.251 37.500 0.00 0.00 0.00 1.28
594 595 8.437274 AATATACTCCCTCCGTTTCTGAATAT 57.563 34.615 0.00 0.00 0.00 1.28
595 596 7.850935 AATATACTCCCTCCGTTTCTGAATA 57.149 36.000 0.00 0.00 0.00 1.75
596 597 6.749036 AATATACTCCCTCCGTTTCTGAAT 57.251 37.500 0.00 0.00 0.00 2.57
597 598 6.555463 AAATATACTCCCTCCGTTTCTGAA 57.445 37.500 0.00 0.00 0.00 3.02
598 599 6.555463 AAAATATACTCCCTCCGTTTCTGA 57.445 37.500 0.00 0.00 0.00 3.27
599 600 8.726870 TTTAAAATATACTCCCTCCGTTTCTG 57.273 34.615 0.00 0.00 0.00 3.02
600 601 9.743581 TTTTTAAAATATACTCCCTCCGTTTCT 57.256 29.630 0.55 0.00 0.00 2.52
615 616 8.544597 GCCGCGGATTTGTTATTTTTAAAATAT 58.455 29.630 33.48 1.85 0.00 1.28
616 617 7.010275 GGCCGCGGATTTGTTATTTTTAAAATA 59.990 33.333 33.48 6.08 0.00 1.40
617 618 6.183360 GGCCGCGGATTTGTTATTTTTAAAAT 60.183 34.615 33.48 8.07 0.00 1.82
618 619 5.120363 GGCCGCGGATTTGTTATTTTTAAAA 59.880 36.000 33.48 0.00 0.00 1.52
619 620 4.626172 GGCCGCGGATTTGTTATTTTTAAA 59.374 37.500 33.48 0.00 0.00 1.52
620 621 4.082136 AGGCCGCGGATTTGTTATTTTTAA 60.082 37.500 33.48 0.00 0.00 1.52
621 622 3.444388 AGGCCGCGGATTTGTTATTTTTA 59.556 39.130 33.48 0.00 0.00 1.52
622 623 2.232696 AGGCCGCGGATTTGTTATTTTT 59.767 40.909 33.48 0.00 0.00 1.94
632 633 1.629043 TCTATAGAAGGCCGCGGATT 58.371 50.000 33.48 23.08 0.00 3.01
639 640 8.568676 AGAAGTTTTCTTTTCTATAGAAGGCC 57.431 34.615 14.63 0.00 40.61 5.19
680 683 0.531974 TTCTGGTCGTGTCTTGGTGC 60.532 55.000 0.00 0.00 0.00 5.01
740 744 4.874396 TCGACTCTTTCTATCGTGCTTCTA 59.126 41.667 0.00 0.00 37.16 2.10
742 746 3.787105 GTCGACTCTTTCTATCGTGCTTC 59.213 47.826 8.70 0.00 37.16 3.86
749 753 1.597445 CCGCGGTCGACTCTTTCTATC 60.597 57.143 19.50 0.00 38.10 2.08
771 775 1.533625 TCGAACCAAAGGGAAGCATG 58.466 50.000 0.00 0.00 38.05 4.06
779 784 1.599419 CGGTTTGCTTCGAACCAAAGG 60.599 52.381 16.87 9.72 45.57 3.11
901 912 3.672295 GAACCGGAGCAGAGCAGGG 62.672 68.421 9.46 0.00 0.00 4.45
902 913 2.125350 GAACCGGAGCAGAGCAGG 60.125 66.667 9.46 0.00 0.00 4.85
903 914 1.153667 GAGAACCGGAGCAGAGCAG 60.154 63.158 9.46 0.00 0.00 4.24
904 915 1.599606 GAGAGAACCGGAGCAGAGCA 61.600 60.000 9.46 0.00 0.00 4.26
905 916 1.140804 GAGAGAACCGGAGCAGAGC 59.859 63.158 9.46 0.00 0.00 4.09
906 917 1.813192 GGAGAGAACCGGAGCAGAG 59.187 63.158 9.46 0.00 0.00 3.35
907 918 4.019983 GGAGAGAACCGGAGCAGA 57.980 61.111 9.46 0.00 0.00 4.26
970 984 0.178861 TTGCTTCTTCTCCCCTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
975 989 0.038890 AGGCTTTGCTTCTTCTCCCC 59.961 55.000 0.00 0.00 0.00 4.81
977 991 1.082690 CGAGGCTTTGCTTCTTCTCC 58.917 55.000 0.00 0.00 32.35 3.71
978 992 1.082690 CCGAGGCTTTGCTTCTTCTC 58.917 55.000 0.00 0.00 32.35 2.87
979 993 0.687354 TCCGAGGCTTTGCTTCTTCT 59.313 50.000 0.00 0.00 32.35 2.85
1087 1106 9.076596 CCGAGCAGGAAAATAAATAAAAAGAAG 57.923 33.333 0.00 0.00 45.00 2.85
1125 1154 4.226761 GCTCCACGGATAAAAACAACAAG 58.773 43.478 0.00 0.00 0.00 3.16
1140 1169 1.062587 CAAAAATAGCTCCGCTCCACG 59.937 52.381 0.00 0.00 40.44 4.94
1365 1396 5.247337 GGGGAAAAAGGATGACATTAACCAA 59.753 40.000 0.00 0.00 0.00 3.67
1376 1407 3.516700 AGCAAGAATGGGGAAAAAGGATG 59.483 43.478 0.00 0.00 0.00 3.51
1385 1416 1.860641 TAGACGAGCAAGAATGGGGA 58.139 50.000 0.00 0.00 0.00 4.81
1387 1418 6.073003 GGATTTATTAGACGAGCAAGAATGGG 60.073 42.308 0.00 0.00 0.00 4.00
1395 1428 2.547218 GCGGGGATTTATTAGACGAGCA 60.547 50.000 0.00 0.00 0.00 4.26
1399 1432 2.612221 GGAGGCGGGGATTTATTAGACG 60.612 54.545 0.00 0.00 0.00 4.18
1405 1446 4.529716 TTTTAAGGAGGCGGGGATTTAT 57.470 40.909 0.00 0.00 0.00 1.40
1414 1455 7.621219 GCACAAACAATAATTTTTAAGGAGGCG 60.621 37.037 0.00 0.00 0.00 5.52
1416 1457 8.600449 TGCACAAACAATAATTTTTAAGGAGG 57.400 30.769 0.00 0.00 0.00 4.30
1430 1471 6.822667 TTGTCTATGAGATGCACAAACAAT 57.177 33.333 0.00 0.00 0.00 2.71
1480 1522 7.044510 CGCATCAAACTAAAAAGTGCAGATATG 60.045 37.037 0.00 0.00 0.00 1.78
1505 1565 4.344865 CCCCAACCTCACCCCACG 62.345 72.222 0.00 0.00 0.00 4.94
1522 1582 0.562674 AACATCCATCCCCAATCCCC 59.437 55.000 0.00 0.00 0.00 4.81
1575 1647 6.743575 AACATACTCATAAGTTGCCTGAAC 57.256 37.500 0.00 0.00 36.92 3.18
1609 1681 4.070630 AGATAATCTGAGAGCAGCCAAC 57.929 45.455 0.00 0.00 42.01 3.77
1699 1807 4.564613 GCTCCTAAATGAATCCTAGGCTCC 60.565 50.000 2.96 0.00 33.51 4.70
1877 2006 5.804692 TGGTGTAGTGTTAACAAACAGTG 57.195 39.130 19.93 0.00 36.99 3.66
2421 2748 9.264719 AGGAAGAAATTTTATTTTGCACAGAAG 57.735 29.630 0.00 0.00 0.00 2.85
2480 2810 3.601443 AGAAGAATGGAAGTCGACTGG 57.399 47.619 20.85 0.00 35.11 4.00
2485 2815 5.238583 AGGTAACAAGAAGAATGGAAGTCG 58.761 41.667 0.00 0.00 35.17 4.18
2501 2831 5.818336 TCGTGAAATTCAGTGAAAGGTAACA 59.182 36.000 10.14 2.59 41.41 2.41
2524 2854 5.531634 TCAGTTGGTTCTGAAATGCATTTC 58.468 37.500 35.04 35.04 44.83 2.17
2556 2886 3.926616 ACTACCGAAGAGTCAACCAATG 58.073 45.455 0.00 0.00 0.00 2.82
2557 2887 4.618920 AACTACCGAAGAGTCAACCAAT 57.381 40.909 0.00 0.00 0.00 3.16
2591 2923 4.147321 ACAGACCAAGCAAAAGATCACAT 58.853 39.130 0.00 0.00 0.00 3.21
2649 2981 4.235079 AGATGCATGCCACCTTAAAGTA 57.765 40.909 16.68 0.00 0.00 2.24
2700 3033 3.317150 TGAGCAGTGTGATAACGACTTG 58.683 45.455 0.00 0.00 0.00 3.16
2727 3062 8.522830 CAAGTATATTGAAGGACAACCAAACAT 58.477 33.333 0.00 0.00 41.52 2.71
2756 3091 2.959030 CCTCACTGGTGCTATACTGCTA 59.041 50.000 0.00 0.00 0.00 3.49
2757 3092 1.759445 CCTCACTGGTGCTATACTGCT 59.241 52.381 0.00 0.00 0.00 4.24
2758 3093 1.808133 GCCTCACTGGTGCTATACTGC 60.808 57.143 0.00 0.00 38.35 4.40
2759 3094 1.482182 TGCCTCACTGGTGCTATACTG 59.518 52.381 0.00 0.00 38.35 2.74
2760 3095 1.866015 TGCCTCACTGGTGCTATACT 58.134 50.000 0.00 0.00 38.35 2.12
2761 3096 2.918712 ATGCCTCACTGGTGCTATAC 57.081 50.000 0.00 0.00 38.35 1.47
2762 3097 2.771372 TGAATGCCTCACTGGTGCTATA 59.229 45.455 0.00 0.00 38.35 1.31
2763 3098 1.561076 TGAATGCCTCACTGGTGCTAT 59.439 47.619 0.00 0.00 38.35 2.97
2868 3204 4.985538 TCCTGAAAATTACAAGCTGGACT 58.014 39.130 0.00 0.00 0.00 3.85
2884 3220 7.174253 GTCAATGGTGTAACAGTAATTCCTGAA 59.826 37.037 4.87 0.00 39.98 3.02
2886 3222 6.429692 TGTCAATGGTGTAACAGTAATTCCTG 59.570 38.462 0.00 0.00 39.98 3.86
3168 3520 7.920227 TCCCATTTCATGATTGGAAAAAGAAT 58.080 30.769 21.20 2.23 37.74 2.40
3365 3717 2.119801 ATGAGCCGATCCAATATGCC 57.880 50.000 0.00 0.00 0.00 4.40
3413 3765 4.577875 AGAGAAAAGATGCAAGTCTGAGG 58.422 43.478 0.00 0.00 0.00 3.86
3759 4121 8.623903 GCCTCAATAGTCATGACAAAATGATAA 58.376 33.333 27.02 5.03 38.76 1.75
3880 4254 3.446161 ACCAAATACTGCACGCTCTACTA 59.554 43.478 0.00 0.00 0.00 1.82
4113 4994 4.599047 ACGAACGAGATTATGCTGTAGAC 58.401 43.478 0.14 0.00 0.00 2.59
4156 5037 1.495951 GCGTAAACTGTGAAGGCGG 59.504 57.895 0.00 0.00 0.00 6.13
4439 5391 3.604392 GAGTTGTTTTGCACGTCTACAC 58.396 45.455 0.00 0.00 0.00 2.90
4488 5493 0.250338 GTGCTCCCTCCGTTCACTTT 60.250 55.000 0.00 0.00 0.00 2.66
4505 5510 9.559958 GATTAACCACATGAAACTAATCAAGTG 57.440 33.333 0.00 5.86 44.48 3.16
4603 5993 2.737783 TGCCATACGAAACACCTAAACG 59.262 45.455 0.00 0.00 0.00 3.60
4689 7030 0.537188 ATCGTGAAATCCCGCAGAGT 59.463 50.000 0.00 0.00 0.00 3.24
4835 7177 7.208777 TGATGTGCAGCTAAAATGAAAAAGAA 58.791 30.769 0.00 0.00 0.00 2.52
4836 7178 6.747125 TGATGTGCAGCTAAAATGAAAAAGA 58.253 32.000 0.00 0.00 0.00 2.52
4837 7179 7.410800 TTGATGTGCAGCTAAAATGAAAAAG 57.589 32.000 0.00 0.00 0.00 2.27
4843 7185 4.259650 CGCAATTGATGTGCAGCTAAAATG 60.260 41.667 10.34 0.00 42.33 2.32
4863 7205 0.589223 GTGAAAATCAACCGACCGCA 59.411 50.000 0.00 0.00 0.00 5.69
4870 7228 2.882137 TCCCTTCGTGTGAAAATCAACC 59.118 45.455 0.00 0.00 32.66 3.77
4873 7231 2.370519 TCCTCCCTTCGTGTGAAAATCA 59.629 45.455 0.00 0.00 32.66 2.57
4884 7242 0.389948 CTCCGTTGTTCCTCCCTTCG 60.390 60.000 0.00 0.00 0.00 3.79
4887 7245 1.918800 CCCTCCGTTGTTCCTCCCT 60.919 63.158 0.00 0.00 0.00 4.20
4908 7266 1.153349 CCTACGGCAAGCTCCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
5251 7609 1.868109 GCCAGTTTTTCTCCGGCAAAC 60.868 52.381 0.00 3.40 42.50 2.93
5252 7610 0.387565 GCCAGTTTTTCTCCGGCAAA 59.612 50.000 0.00 0.00 42.50 3.68
5253 7611 1.460273 GGCCAGTTTTTCTCCGGCAA 61.460 55.000 0.00 0.00 44.82 4.52
5254 7612 1.901464 GGCCAGTTTTTCTCCGGCA 60.901 57.895 0.00 0.00 44.82 5.69
5255 7613 1.250840 ATGGCCAGTTTTTCTCCGGC 61.251 55.000 13.05 0.00 42.21 6.13
5256 7614 1.067635 CAATGGCCAGTTTTTCTCCGG 60.068 52.381 13.05 0.00 0.00 5.14
5257 7615 1.669795 GCAATGGCCAGTTTTTCTCCG 60.670 52.381 13.05 0.00 0.00 4.63
5258 7616 2.084610 GCAATGGCCAGTTTTTCTCC 57.915 50.000 13.05 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.