Multiple sequence alignment - TraesCS6A01G348000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G348000 chr6A 100.000 4340 0 0 1 4340 580276939 580281278 0.000000e+00 8015.0
1 TraesCS6A01G348000 chr6A 90.282 885 58 14 1 858 28329955 28329072 0.000000e+00 1133.0
2 TraesCS6A01G348000 chr6A 92.857 168 10 2 2419 2585 580279301 580279467 4.340000e-60 243.0
3 TraesCS6A01G348000 chr6A 92.857 168 10 2 2363 2529 580279357 580279523 4.340000e-60 243.0
4 TraesCS6A01G348000 chr6A 90.476 105 4 1 3679 3777 580280562 580280666 2.720000e-27 134.0
5 TraesCS6A01G348000 chr6A 90.476 105 4 1 3624 3728 580280617 580280715 2.720000e-27 134.0
6 TraesCS6A01G348000 chr6A 92.500 80 6 0 2506 2585 580279304 580279383 9.860000e-22 115.0
7 TraesCS6A01G348000 chr6A 92.500 80 6 0 2366 2445 580279444 580279523 9.860000e-22 115.0
8 TraesCS6A01G348000 chr6A 93.750 48 3 0 3544 3591 53819996 53820043 6.020000e-09 73.1
9 TraesCS6A01G348000 chr6D 92.433 1044 55 12 2560 3591 434019660 434020691 0.000000e+00 1469.0
10 TraesCS6A01G348000 chr6D 92.492 666 27 11 887 1529 434017338 434018003 0.000000e+00 931.0
11 TraesCS6A01G348000 chr6D 94.695 509 22 2 3833 4340 434020832 434021336 0.000000e+00 785.0
12 TraesCS6A01G348000 chr6B 94.181 928 32 10 2668 3573 656511373 656512300 0.000000e+00 1395.0
13 TraesCS6A01G348000 chr6B 93.193 617 30 5 3728 4340 656512398 656513006 0.000000e+00 896.0
14 TraesCS6A01G348000 chr6B 94.991 539 22 4 935 1470 656509369 656509905 0.000000e+00 841.0
15 TraesCS6A01G348000 chr6B 79.099 866 119 32 1548 2361 656509951 656510806 1.370000e-149 540.0
16 TraesCS6A01G348000 chr6B 91.463 82 7 0 3585 3666 656512359 656512440 3.550000e-21 113.0
17 TraesCS6A01G348000 chr6B 93.750 48 3 0 3544 3591 584612751 584612704 6.020000e-09 73.1
18 TraesCS6A01G348000 chr7A 94.451 883 20 5 1 858 666167757 666166879 0.000000e+00 1332.0
19 TraesCS6A01G348000 chr7A 80.909 880 131 20 1 848 161723135 161724009 0.000000e+00 660.0
20 TraesCS6A01G348000 chr2A 89.966 887 60 9 1 860 698951754 698952638 0.000000e+00 1118.0
21 TraesCS6A01G348000 chr7B 89.691 873 72 8 7 861 739410319 739411191 0.000000e+00 1098.0
22 TraesCS6A01G348000 chr7B 80.936 876 123 27 9 848 43756201 43755334 0.000000e+00 652.0
23 TraesCS6A01G348000 chr4B 87.500 888 76 16 1 857 34536965 34537848 0.000000e+00 992.0
24 TraesCS6A01G348000 chr4B 80.708 876 129 23 7 848 462774482 462773613 0.000000e+00 645.0
25 TraesCS6A01G348000 chr4B 83.741 572 78 9 2672 3240 58598501 58597942 1.070000e-145 527.0
26 TraesCS6A01G348000 chr4B 91.765 340 22 3 1131 1467 58599550 58599214 6.570000e-128 468.0
27 TraesCS6A01G348000 chr5B 87.345 885 78 13 1 857 18689604 18690482 0.000000e+00 983.0
28 TraesCS6A01G348000 chr5B 89.764 127 9 2 1213 1338 586847518 586847395 4.490000e-35 159.0
29 TraesCS6A01G348000 chr3D 81.511 887 120 27 7 858 113312929 113312052 0.000000e+00 689.0
30 TraesCS6A01G348000 chr1B 81.271 881 128 17 1 849 539599388 539600263 0.000000e+00 678.0
31 TraesCS6A01G348000 chr4A 84.505 555 74 7 2672 3226 559946367 559946909 4.940000e-149 538.0
32 TraesCS6A01G348000 chr4A 91.168 351 24 5 1120 1467 559945312 559945658 1.830000e-128 470.0
33 TraesCS6A01G348000 chr4D 84.144 555 76 7 2672 3226 40124191 40123649 1.070000e-145 527.0
34 TraesCS6A01G348000 chr4D 90.102 394 30 5 1081 1470 40125276 40124888 1.800000e-138 503.0
35 TraesCS6A01G348000 chr5A 82.000 500 78 9 2862 3353 597799179 597798684 8.680000e-112 414.0
36 TraesCS6A01G348000 chr5D 80.645 372 57 12 2989 3353 478965939 478965576 1.540000e-69 274.0
37 TraesCS6A01G348000 chr5D 87.079 178 17 6 1294 1467 254898154 254898329 3.420000e-46 196.0
38 TraesCS6A01G348000 chr5D 87.079 178 17 6 1294 1467 254901375 254901550 3.420000e-46 196.0
39 TraesCS6A01G348000 chr5D 93.750 48 3 0 3544 3591 240135992 240136039 6.020000e-09 73.1
40 TraesCS6A01G348000 chrUn 87.079 178 17 6 1294 1467 362176424 362176599 3.420000e-46 196.0
41 TraesCS6A01G348000 chrUn 93.750 48 3 0 3544 3591 440189567 440189614 6.020000e-09 73.1
42 TraesCS6A01G348000 chr7D 93.750 48 3 0 3544 3591 231553042 231553089 6.020000e-09 73.1
43 TraesCS6A01G348000 chr2D 93.750 48 3 0 3544 3591 334230780 334230827 6.020000e-09 73.1
44 TraesCS6A01G348000 chr1D 93.750 48 3 0 3544 3591 19956303 19956350 6.020000e-09 73.1
45 TraesCS6A01G348000 chr1D 93.750 48 3 0 3544 3591 483916316 483916269 6.020000e-09 73.1
46 TraesCS6A01G348000 chr1A 93.750 48 3 0 3544 3591 124193162 124193209 6.020000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G348000 chr6A 580276939 580281278 4339 False 1285.571429 8015 93.095143 1 4340 7 chr6A.!!$F2 4339
1 TraesCS6A01G348000 chr6A 28329072 28329955 883 True 1133.000000 1133 90.282000 1 858 1 chr6A.!!$R1 857
2 TraesCS6A01G348000 chr6D 434017338 434021336 3998 False 1061.666667 1469 93.206667 887 4340 3 chr6D.!!$F1 3453
3 TraesCS6A01G348000 chr6B 656509369 656513006 3637 False 757.000000 1395 90.585400 935 4340 5 chr6B.!!$F1 3405
4 TraesCS6A01G348000 chr7A 666166879 666167757 878 True 1332.000000 1332 94.451000 1 858 1 chr7A.!!$R1 857
5 TraesCS6A01G348000 chr7A 161723135 161724009 874 False 660.000000 660 80.909000 1 848 1 chr7A.!!$F1 847
6 TraesCS6A01G348000 chr2A 698951754 698952638 884 False 1118.000000 1118 89.966000 1 860 1 chr2A.!!$F1 859
7 TraesCS6A01G348000 chr7B 739410319 739411191 872 False 1098.000000 1098 89.691000 7 861 1 chr7B.!!$F1 854
8 TraesCS6A01G348000 chr7B 43755334 43756201 867 True 652.000000 652 80.936000 9 848 1 chr7B.!!$R1 839
9 TraesCS6A01G348000 chr4B 34536965 34537848 883 False 992.000000 992 87.500000 1 857 1 chr4B.!!$F1 856
10 TraesCS6A01G348000 chr4B 462773613 462774482 869 True 645.000000 645 80.708000 7 848 1 chr4B.!!$R1 841
11 TraesCS6A01G348000 chr4B 58597942 58599550 1608 True 497.500000 527 87.753000 1131 3240 2 chr4B.!!$R2 2109
12 TraesCS6A01G348000 chr5B 18689604 18690482 878 False 983.000000 983 87.345000 1 857 1 chr5B.!!$F1 856
13 TraesCS6A01G348000 chr3D 113312052 113312929 877 True 689.000000 689 81.511000 7 858 1 chr3D.!!$R1 851
14 TraesCS6A01G348000 chr1B 539599388 539600263 875 False 678.000000 678 81.271000 1 849 1 chr1B.!!$F1 848
15 TraesCS6A01G348000 chr4A 559945312 559946909 1597 False 504.000000 538 87.836500 1120 3226 2 chr4A.!!$F1 2106
16 TraesCS6A01G348000 chr4D 40123649 40125276 1627 True 515.000000 527 87.123000 1081 3226 2 chr4D.!!$R1 2145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 627 0.741927 CAGCGCAGTCACATCATCCA 60.742 55.0 11.47 0.0 0.00 3.41 F
2064 2236 0.032615 AGAGAGCGACCCCATTCTCT 60.033 55.0 0.00 0.0 41.05 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2937 0.604578 TGGGGTACGGAAGAAAGACG 59.395 55.0 0.0 0.0 0.0 4.18 R
3751 4978 0.036732 AGGCGGATTTCAGTGCTTGA 59.963 50.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 8.655935 ATCCAGGAGTTTTTCATATTTGAGTT 57.344 30.769 0.00 0.00 32.27 3.01
490 516 1.295423 GCGAGTGAACCCTAGCCAA 59.705 57.895 0.00 0.00 0.00 4.52
527 555 1.370437 CTCATCCGGGCCTCATCTG 59.630 63.158 0.84 0.00 0.00 2.90
599 627 0.741927 CAGCGCAGTCACATCATCCA 60.742 55.000 11.47 0.00 0.00 3.41
621 649 1.227556 CCGTAGGCCCTGAATTCGG 60.228 63.158 7.35 7.35 46.14 4.30
873 913 2.279186 AAAAAGTTGCGCGTGGGC 60.279 55.556 8.43 1.46 0.00 5.36
874 914 3.783478 AAAAAGTTGCGCGTGGGCC 62.783 57.895 8.43 0.00 35.02 5.80
896 936 3.512516 GCATCGGCCAGCTGGTTC 61.513 66.667 32.81 23.22 37.57 3.62
898 938 4.473520 ATCGGCCAGCTGGTTCCG 62.474 66.667 33.84 33.84 40.67 4.30
929 969 4.764336 CACCTGCGCGCATGTTGG 62.764 66.667 34.45 31.68 0.00 3.77
931 971 4.170062 CCTGCGCGCATGTTGGAG 62.170 66.667 36.48 20.69 0.00 3.86
933 973 2.667874 TGCGCGCATGTTGGAGAA 60.668 55.556 33.09 2.14 0.00 2.87
1117 1162 3.252284 CCCTAGCGCCCCATCCAT 61.252 66.667 2.29 0.00 0.00 3.41
1119 1164 2.348998 CTAGCGCCCCATCCATCC 59.651 66.667 2.29 0.00 0.00 3.51
1128 1181 2.664185 CATCCATCCAGCGAGCGG 60.664 66.667 0.00 0.71 0.00 5.52
1129 1182 3.157252 ATCCATCCAGCGAGCGGT 61.157 61.111 0.00 0.00 0.00 5.68
1202 1258 2.971452 GGCGACCTCGACTTCCTT 59.029 61.111 0.00 0.00 45.57 3.36
1502 1605 3.660501 ATCAGTTGCTGTGTCGTTAGA 57.339 42.857 0.00 0.00 32.61 2.10
1515 1618 3.566523 GTCGTTAGACACTCTCTTGGTG 58.433 50.000 0.00 0.00 46.32 4.17
1522 1625 3.070018 GACACTCTCTTGGTGTGGATTG 58.930 50.000 4.18 0.00 46.23 2.67
1529 1632 4.012374 CTCTTGGTGTGGATTGCTGTTAT 58.988 43.478 0.00 0.00 0.00 1.89
1530 1633 4.009675 TCTTGGTGTGGATTGCTGTTATC 58.990 43.478 0.00 0.00 0.00 1.75
1531 1634 2.722094 TGGTGTGGATTGCTGTTATCC 58.278 47.619 0.00 0.00 41.63 2.59
1532 1635 2.024414 GGTGTGGATTGCTGTTATCCC 58.976 52.381 0.00 0.00 40.74 3.85
1533 1636 2.024414 GTGTGGATTGCTGTTATCCCC 58.976 52.381 0.00 0.00 40.74 4.81
1534 1637 1.922447 TGTGGATTGCTGTTATCCCCT 59.078 47.619 0.00 0.00 40.74 4.79
1536 1639 1.922447 TGGATTGCTGTTATCCCCTGT 59.078 47.619 0.00 0.00 40.74 4.00
1537 1640 3.118038 GTGGATTGCTGTTATCCCCTGTA 60.118 47.826 0.00 0.00 40.74 2.74
1538 1641 3.136443 TGGATTGCTGTTATCCCCTGTAG 59.864 47.826 0.00 0.00 40.74 2.74
1539 1642 2.710096 TTGCTGTTATCCCCTGTAGC 57.290 50.000 0.00 0.00 0.00 3.58
1540 1643 1.578897 TGCTGTTATCCCCTGTAGCA 58.421 50.000 0.00 0.00 38.68 3.49
1541 1644 2.126882 TGCTGTTATCCCCTGTAGCAT 58.873 47.619 0.00 0.00 36.37 3.79
1542 1645 2.509548 TGCTGTTATCCCCTGTAGCATT 59.490 45.455 0.00 0.00 36.37 3.56
1543 1646 3.714280 TGCTGTTATCCCCTGTAGCATTA 59.286 43.478 0.00 0.00 36.37 1.90
1544 1647 4.350816 TGCTGTTATCCCCTGTAGCATTAT 59.649 41.667 0.00 0.00 36.37 1.28
1545 1648 5.546110 TGCTGTTATCCCCTGTAGCATTATA 59.454 40.000 0.00 0.00 36.37 0.98
1546 1649 6.109359 GCTGTTATCCCCTGTAGCATTATAG 58.891 44.000 0.00 0.00 0.00 1.31
1547 1650 6.070767 GCTGTTATCCCCTGTAGCATTATAGA 60.071 42.308 0.00 0.00 0.00 1.98
1548 1651 7.482169 TGTTATCCCCTGTAGCATTATAGAG 57.518 40.000 0.00 0.00 0.00 2.43
1549 1652 7.016914 TGTTATCCCCTGTAGCATTATAGAGT 58.983 38.462 0.00 0.00 0.00 3.24
1550 1653 7.178628 TGTTATCCCCTGTAGCATTATAGAGTC 59.821 40.741 0.00 0.00 0.00 3.36
1551 1654 5.074746 TCCCCTGTAGCATTATAGAGTCA 57.925 43.478 0.00 0.00 0.00 3.41
1552 1655 5.464069 TCCCCTGTAGCATTATAGAGTCAA 58.536 41.667 0.00 0.00 0.00 3.18
1553 1656 5.540337 TCCCCTGTAGCATTATAGAGTCAAG 59.460 44.000 0.00 0.00 0.00 3.02
1554 1657 5.540337 CCCCTGTAGCATTATAGAGTCAAGA 59.460 44.000 0.00 0.00 0.00 3.02
1555 1658 6.212388 CCCCTGTAGCATTATAGAGTCAAGAT 59.788 42.308 0.00 0.00 0.00 2.40
1566 1669 2.507471 AGAGTCAAGATTGGGGATCCAC 59.493 50.000 15.23 11.51 43.94 4.02
1567 1670 2.239654 GAGTCAAGATTGGGGATCCACA 59.760 50.000 14.36 14.36 43.94 4.17
1598 1701 5.053145 GCGTTGATCCAATCAGAAGTCTAT 58.947 41.667 0.00 0.00 40.94 1.98
1601 1704 7.386299 GCGTTGATCCAATCAGAAGTCTATATT 59.614 37.037 0.00 0.00 40.94 1.28
1603 1706 9.213799 GTTGATCCAATCAGAAGTCTATATTCC 57.786 37.037 0.00 0.00 40.94 3.01
1609 1712 5.440234 TCAGAAGTCTATATTCCGTCAGC 57.560 43.478 0.00 0.00 0.00 4.26
1615 1719 2.064762 CTATATTCCGTCAGCTGCTGC 58.935 52.381 24.38 17.48 40.05 5.25
1647 1751 9.477484 GTTTAGTGATTACATGTACATCTAGGG 57.523 37.037 5.07 0.00 0.00 3.53
1649 1753 7.914427 AGTGATTACATGTACATCTAGGGAA 57.086 36.000 5.07 0.00 0.00 3.97
1650 1754 8.497910 AGTGATTACATGTACATCTAGGGAAT 57.502 34.615 5.07 3.18 0.00 3.01
1687 1793 9.886132 ATAGTAACATTTCTAACTGGTAGGTTG 57.114 33.333 0.00 0.00 0.00 3.77
1703 1809 2.441750 AGGTTGCTGGAAGGACAGTAAA 59.558 45.455 0.00 0.00 43.09 2.01
1704 1810 3.074538 AGGTTGCTGGAAGGACAGTAAAT 59.925 43.478 0.00 0.00 43.09 1.40
1705 1811 4.288626 AGGTTGCTGGAAGGACAGTAAATA 59.711 41.667 0.00 0.00 43.09 1.40
1707 1813 5.488341 GTTGCTGGAAGGACAGTAAATAGA 58.512 41.667 0.00 0.00 43.09 1.98
1708 1814 5.957771 TGCTGGAAGGACAGTAAATAGAT 57.042 39.130 0.00 0.00 40.59 1.98
1709 1815 6.313519 TGCTGGAAGGACAGTAAATAGATT 57.686 37.500 0.00 0.00 40.59 2.40
1710 1816 6.115446 TGCTGGAAGGACAGTAAATAGATTG 58.885 40.000 0.00 0.00 40.59 2.67
1723 1857 8.877779 CAGTAAATAGATTGGTAGCTATGATGC 58.122 37.037 0.00 0.00 33.43 3.91
1730 1864 2.632996 TGGTAGCTATGATGCAGTACCC 59.367 50.000 0.00 0.00 34.99 3.69
1742 1876 1.737793 GCAGTACCCAACATTTCTCCG 59.262 52.381 0.00 0.00 0.00 4.63
1779 1914 3.523606 TGTGTTTTGAAGCAATGCTGT 57.476 38.095 9.14 0.00 39.62 4.40
1790 1937 2.682856 AGCAATGCTGTTATTGGGTACG 59.317 45.455 7.07 0.00 37.57 3.67
1810 1958 1.005450 GGGGGCAGAATACCAGTTTCA 59.995 52.381 0.00 0.00 0.00 2.69
1853 2019 4.072131 AGTTTAGAGAAGCCGCAATTGAA 58.928 39.130 10.34 0.00 0.00 2.69
1857 2023 3.841643 AGAGAAGCCGCAATTGAATTTG 58.158 40.909 10.34 0.00 0.00 2.32
1862 2028 2.807392 AGCCGCAATTGAATTTGTTTGG 59.193 40.909 10.34 0.00 0.00 3.28
1871 2037 5.413309 TTGAATTTGTTTGGGTTGTGAGT 57.587 34.783 0.00 0.00 0.00 3.41
1874 2045 3.495670 TTTGTTTGGGTTGTGAGTTCG 57.504 42.857 0.00 0.00 0.00 3.95
1877 2048 1.602377 GTTTGGGTTGTGAGTTCGAGG 59.398 52.381 0.00 0.00 0.00 4.63
1888 2059 3.255149 GTGAGTTCGAGGTAGGTTCTTCA 59.745 47.826 0.00 0.00 0.00 3.02
1890 2061 2.826725 AGTTCGAGGTAGGTTCTTCAGG 59.173 50.000 0.00 0.00 0.00 3.86
1894 2066 3.760684 TCGAGGTAGGTTCTTCAGGTAAC 59.239 47.826 0.00 0.00 0.00 2.50
1925 2097 4.216687 TGTTTTAGTTAGGCGGGTGATTTG 59.783 41.667 0.00 0.00 0.00 2.32
1935 2107 2.747446 GCGGGTGATTTGAGTATGTTGT 59.253 45.455 0.00 0.00 0.00 3.32
1936 2108 3.426159 GCGGGTGATTTGAGTATGTTGTG 60.426 47.826 0.00 0.00 0.00 3.33
1944 2116 1.202746 TGAGTATGTTGTGTGCAGGCA 60.203 47.619 0.00 0.00 0.00 4.75
1988 2160 4.706962 GGGATTTCCAGTTGCAGTTCTAAT 59.293 41.667 0.00 0.00 37.91 1.73
2003 2175 5.571741 CAGTTCTAATTGCACTGCTGATTTG 59.428 40.000 1.98 4.63 33.60 2.32
2006 2178 0.899720 ATTGCACTGCTGATTTGGGG 59.100 50.000 1.98 0.00 0.00 4.96
2009 2181 0.323360 GCACTGCTGATTTGGGGGTA 60.323 55.000 0.00 0.00 0.00 3.69
2012 2184 1.004745 ACTGCTGATTTGGGGGTACAG 59.995 52.381 0.00 0.00 0.00 2.74
2022 2194 7.060421 TGATTTGGGGGTACAGAAGAATTATC 58.940 38.462 0.00 0.00 0.00 1.75
2023 2195 6.652205 TTTGGGGGTACAGAAGAATTATCT 57.348 37.500 0.00 0.00 37.57 1.98
2064 2236 0.032615 AGAGAGCGACCCCATTCTCT 60.033 55.000 0.00 0.00 41.05 3.10
2080 2252 6.418101 CCATTCTCTTCATTCCAGTTTCCTA 58.582 40.000 0.00 0.00 0.00 2.94
2082 2254 7.228308 CCATTCTCTTCATTCCAGTTTCCTATC 59.772 40.741 0.00 0.00 0.00 2.08
2083 2255 7.502060 TTCTCTTCATTCCAGTTTCCTATCT 57.498 36.000 0.00 0.00 0.00 1.98
2084 2256 8.609617 TTCTCTTCATTCCAGTTTCCTATCTA 57.390 34.615 0.00 0.00 0.00 1.98
2086 2258 7.841729 TCTCTTCATTCCAGTTTCCTATCTAGT 59.158 37.037 0.00 0.00 0.00 2.57
2102 2274 9.656323 TCCTATCTAGTGGTGATTATGTTTACT 57.344 33.333 0.00 0.00 0.00 2.24
2110 2282 9.357161 AGTGGTGATTATGTTTACTAAAAACCA 57.643 29.630 0.00 0.00 30.91 3.67
2132 2814 6.484977 ACCAAAATTGACTTGTGTGTTTTGTT 59.515 30.769 0.00 0.00 35.75 2.83
2133 2815 7.012799 ACCAAAATTGACTTGTGTGTTTTGTTT 59.987 29.630 0.00 0.00 35.75 2.83
2150 2832 9.462174 TGTTTTGTTTTAGATGATTTACTGCTG 57.538 29.630 0.00 0.00 0.00 4.41
2170 2852 9.979578 ACTGCTGTAGATATTCTATTTCTTGAG 57.020 33.333 0.00 0.00 30.76 3.02
2171 2853 9.979578 CTGCTGTAGATATTCTATTTCTTGAGT 57.020 33.333 0.00 0.00 30.76 3.41
2218 2900 8.973835 TGAGTAGGTTAAAGTTTTGTTTGTTG 57.026 30.769 0.00 0.00 0.00 3.33
2219 2901 8.578151 TGAGTAGGTTAAAGTTTTGTTTGTTGT 58.422 29.630 0.00 0.00 0.00 3.32
2250 2937 2.092323 GGTTCTGGGGCATGTTAACTC 58.908 52.381 7.22 0.00 0.00 3.01
2265 2952 5.215160 TGTTAACTCGTCTTTCTTCCGTAC 58.785 41.667 7.22 0.00 0.00 3.67
2270 2957 1.001181 CGTCTTTCTTCCGTACCCCAA 59.999 52.381 0.00 0.00 0.00 4.12
2273 2960 0.401356 TTTCTTCCGTACCCCAACCC 59.599 55.000 0.00 0.00 0.00 4.11
2274 2961 0.474273 TTCTTCCGTACCCCAACCCT 60.474 55.000 0.00 0.00 0.00 4.34
2278 3377 1.499368 TCCGTACCCCAACCCTAATC 58.501 55.000 0.00 0.00 0.00 1.75
2280 3379 1.140252 CCGTACCCCAACCCTAATCTG 59.860 57.143 0.00 0.00 0.00 2.90
2299 3398 1.202867 TGACCTTGCAGTATTGTGCCA 60.203 47.619 0.00 0.00 43.28 4.92
2310 3409 3.444742 AGTATTGTGCCATGGATGTTGTG 59.555 43.478 18.40 0.00 0.00 3.33
2311 3410 0.317799 TTGTGCCATGGATGTTGTGC 59.682 50.000 18.40 0.00 0.00 4.57
2345 3485 2.380064 TTGGCCATCCTTGTGTTCTT 57.620 45.000 6.09 0.00 0.00 2.52
2355 3495 3.627577 TCCTTGTGTTCTTCTCAAACTGC 59.372 43.478 0.00 0.00 0.00 4.40
2361 3501 5.105797 TGTGTTCTTCTCAAACTGCAACATT 60.106 36.000 0.00 0.00 0.00 2.71
2362 3502 5.807011 GTGTTCTTCTCAAACTGCAACATTT 59.193 36.000 0.00 0.00 0.00 2.32
2363 3503 6.972328 GTGTTCTTCTCAAACTGCAACATTTA 59.028 34.615 0.00 0.00 0.00 1.40
2364 3504 7.649306 GTGTTCTTCTCAAACTGCAACATTTAT 59.351 33.333 0.00 0.00 0.00 1.40
2365 3505 7.862372 TGTTCTTCTCAAACTGCAACATTTATC 59.138 33.333 0.00 0.00 0.00 1.75
2366 3506 7.750229 TCTTCTCAAACTGCAACATTTATCT 57.250 32.000 0.00 0.00 0.00 1.98
2367 3507 8.169977 TCTTCTCAAACTGCAACATTTATCTT 57.830 30.769 0.00 0.00 0.00 2.40
2368 3508 8.632679 TCTTCTCAAACTGCAACATTTATCTTT 58.367 29.630 0.00 0.00 0.00 2.52
2369 3509 9.252962 CTTCTCAAACTGCAACATTTATCTTTT 57.747 29.630 0.00 0.00 0.00 2.27
2370 3510 9.598517 TTCTCAAACTGCAACATTTATCTTTTT 57.401 25.926 0.00 0.00 0.00 1.94
2373 3513 8.977505 TCAAACTGCAACATTTATCTTTTTAGC 58.022 29.630 0.00 0.00 0.00 3.09
2374 3514 7.566858 AACTGCAACATTTATCTTTTTAGCG 57.433 32.000 0.00 0.00 0.00 4.26
2375 3515 6.677913 ACTGCAACATTTATCTTTTTAGCGT 58.322 32.000 0.00 0.00 0.00 5.07
2376 3516 7.145323 ACTGCAACATTTATCTTTTTAGCGTT 58.855 30.769 0.00 0.00 0.00 4.84
2377 3517 7.114811 ACTGCAACATTTATCTTTTTAGCGTTG 59.885 33.333 0.00 0.00 35.49 4.10
2378 3518 6.233500 GCAACATTTATCTTTTTAGCGTTGC 58.766 36.000 7.56 7.56 46.53 4.17
2379 3519 7.566858 CAACATTTATCTTTTTAGCGTTGCT 57.433 32.000 0.00 0.00 43.41 3.91
2380 3520 8.667987 CAACATTTATCTTTTTAGCGTTGCTA 57.332 30.769 0.00 0.00 40.44 3.49
2389 3529 3.396260 TTAGCGTTGCTAACAGTTCCT 57.604 42.857 7.14 0.00 44.75 3.36
2390 3530 2.256117 AGCGTTGCTAACAGTTCCTT 57.744 45.000 0.00 0.00 36.99 3.36
2391 3531 3.396260 AGCGTTGCTAACAGTTCCTTA 57.604 42.857 0.00 0.00 36.99 2.69
2392 3532 3.064931 AGCGTTGCTAACAGTTCCTTAC 58.935 45.455 0.00 0.00 36.99 2.34
2393 3533 2.159037 GCGTTGCTAACAGTTCCTTACC 59.841 50.000 0.00 0.00 0.00 2.85
2394 3534 3.660865 CGTTGCTAACAGTTCCTTACCT 58.339 45.455 0.00 0.00 0.00 3.08
2395 3535 4.062991 CGTTGCTAACAGTTCCTTACCTT 58.937 43.478 0.00 0.00 0.00 3.50
2396 3536 4.151867 CGTTGCTAACAGTTCCTTACCTTC 59.848 45.833 0.00 0.00 0.00 3.46
2397 3537 5.306394 GTTGCTAACAGTTCCTTACCTTCT 58.694 41.667 0.00 0.00 0.00 2.85
2398 3538 5.562298 TGCTAACAGTTCCTTACCTTCTT 57.438 39.130 0.00 0.00 0.00 2.52
2399 3539 6.675413 TGCTAACAGTTCCTTACCTTCTTA 57.325 37.500 0.00 0.00 0.00 2.10
2400 3540 6.698380 TGCTAACAGTTCCTTACCTTCTTAG 58.302 40.000 0.00 0.00 0.00 2.18
2401 3541 5.581479 GCTAACAGTTCCTTACCTTCTTAGC 59.419 44.000 0.00 0.00 0.00 3.09
2402 3542 5.562298 AACAGTTCCTTACCTTCTTAGCA 57.438 39.130 0.00 0.00 0.00 3.49
2403 3543 5.763876 ACAGTTCCTTACCTTCTTAGCAT 57.236 39.130 0.00 0.00 0.00 3.79
2404 3544 6.128138 ACAGTTCCTTACCTTCTTAGCATT 57.872 37.500 0.00 0.00 0.00 3.56
2405 3545 5.940470 ACAGTTCCTTACCTTCTTAGCATTG 59.060 40.000 0.00 0.00 0.00 2.82
2406 3546 4.944317 AGTTCCTTACCTTCTTAGCATTGC 59.056 41.667 0.00 0.00 0.00 3.56
2407 3547 4.844349 TCCTTACCTTCTTAGCATTGCT 57.156 40.909 16.63 16.63 43.41 3.91
2408 3548 5.950544 TCCTTACCTTCTTAGCATTGCTA 57.049 39.130 14.33 14.33 40.44 3.49
2409 3549 6.308015 TCCTTACCTTCTTAGCATTGCTAA 57.692 37.500 25.36 25.36 46.97 3.09
2410 3550 6.113411 TCCTTACCTTCTTAGCATTGCTAAC 58.887 40.000 23.80 0.00 44.75 2.34
2411 3551 5.880332 CCTTACCTTCTTAGCATTGCTAACA 59.120 40.000 23.80 13.66 44.75 2.41
2412 3552 6.037610 CCTTACCTTCTTAGCATTGCTAACAG 59.962 42.308 23.80 20.59 44.75 3.16
2413 3553 4.911390 ACCTTCTTAGCATTGCTAACAGT 58.089 39.130 23.80 15.95 44.75 3.55
2414 3554 4.697352 ACCTTCTTAGCATTGCTAACAGTG 59.303 41.667 23.80 15.53 44.75 3.66
2422 3562 3.866651 CATTGCTAACAGTGCTCTACCT 58.133 45.455 0.00 0.00 0.00 3.08
2423 3563 4.256920 CATTGCTAACAGTGCTCTACCTT 58.743 43.478 0.00 0.00 0.00 3.50
2424 3564 3.594603 TGCTAACAGTGCTCTACCTTC 57.405 47.619 0.00 0.00 0.00 3.46
2425 3565 3.165875 TGCTAACAGTGCTCTACCTTCT 58.834 45.455 0.00 0.00 0.00 2.85
2426 3566 3.578716 TGCTAACAGTGCTCTACCTTCTT 59.421 43.478 0.00 0.00 0.00 2.52
2427 3567 4.770531 TGCTAACAGTGCTCTACCTTCTTA 59.229 41.667 0.00 0.00 0.00 2.10
2428 3568 5.105716 TGCTAACAGTGCTCTACCTTCTTAG 60.106 44.000 0.00 0.00 0.00 2.18
2429 3569 3.878160 ACAGTGCTCTACCTTCTTAGC 57.122 47.619 0.00 0.00 35.51 3.09
2430 3570 3.165875 ACAGTGCTCTACCTTCTTAGCA 58.834 45.455 0.00 0.00 42.41 3.49
2431 3571 3.772025 ACAGTGCTCTACCTTCTTAGCAT 59.228 43.478 0.00 0.00 45.86 3.79
2432 3572 4.223923 ACAGTGCTCTACCTTCTTAGCATT 59.776 41.667 0.00 0.00 45.86 3.56
2433 3573 4.569966 CAGTGCTCTACCTTCTTAGCATTG 59.430 45.833 0.00 0.00 45.86 2.82
2434 3574 3.311048 GTGCTCTACCTTCTTAGCATTGC 59.689 47.826 0.00 0.00 45.86 3.56
2435 3575 3.198635 TGCTCTACCTTCTTAGCATTGCT 59.801 43.478 16.63 16.63 39.92 3.91
2436 3576 4.405680 TGCTCTACCTTCTTAGCATTGCTA 59.594 41.667 14.33 14.33 39.92 3.49
2437 3577 5.104941 TGCTCTACCTTCTTAGCATTGCTAA 60.105 40.000 25.36 25.36 46.97 3.09
2438 3578 5.235401 GCTCTACCTTCTTAGCATTGCTAAC 59.765 44.000 23.80 9.16 44.75 2.34
2439 3579 6.294361 TCTACCTTCTTAGCATTGCTAACA 57.706 37.500 23.80 13.66 44.75 2.41
2440 3580 6.341316 TCTACCTTCTTAGCATTGCTAACAG 58.659 40.000 23.80 20.59 44.75 3.16
2441 3581 4.911390 ACCTTCTTAGCATTGCTAACAGT 58.089 39.130 23.80 15.95 44.75 3.55
2442 3582 4.697352 ACCTTCTTAGCATTGCTAACAGTG 59.303 41.667 23.80 15.53 44.75 3.66
2449 3589 3.754188 CATTGCTAACAGTGCTCTTCC 57.246 47.619 0.00 0.00 0.00 3.46
2450 3590 3.341823 CATTGCTAACAGTGCTCTTCCT 58.658 45.455 0.00 0.00 0.00 3.36
2451 3591 3.492102 TTGCTAACAGTGCTCTTCCTT 57.508 42.857 0.00 0.00 0.00 3.36
2452 3592 3.045601 TGCTAACAGTGCTCTTCCTTC 57.954 47.619 0.00 0.00 0.00 3.46
2453 3593 2.634940 TGCTAACAGTGCTCTTCCTTCT 59.365 45.455 0.00 0.00 0.00 2.85
2454 3594 3.071602 TGCTAACAGTGCTCTTCCTTCTT 59.928 43.478 0.00 0.00 0.00 2.52
2455 3595 4.283467 TGCTAACAGTGCTCTTCCTTCTTA 59.717 41.667 0.00 0.00 0.00 2.10
2456 3596 4.867608 GCTAACAGTGCTCTTCCTTCTTAG 59.132 45.833 0.00 0.00 0.00 2.18
2457 3597 3.326836 ACAGTGCTCTTCCTTCTTAGC 57.673 47.619 0.00 0.00 35.51 3.09
2458 3598 2.634940 ACAGTGCTCTTCCTTCTTAGCA 59.365 45.455 0.00 0.00 42.41 3.49
2459 3599 3.262915 ACAGTGCTCTTCCTTCTTAGCAT 59.737 43.478 0.00 0.00 45.86 3.79
2460 3600 4.260170 CAGTGCTCTTCCTTCTTAGCATT 58.740 43.478 0.00 0.00 45.86 3.56
2461 3601 4.094590 CAGTGCTCTTCCTTCTTAGCATTG 59.905 45.833 0.00 0.00 45.86 2.82
2462 3602 3.012518 TGCTCTTCCTTCTTAGCATTGC 58.987 45.455 0.00 0.00 39.92 3.56
2463 3603 3.277715 GCTCTTCCTTCTTAGCATTGCT 58.722 45.455 16.63 16.63 43.41 3.91
2464 3604 4.080919 TGCTCTTCCTTCTTAGCATTGCTA 60.081 41.667 14.33 14.33 39.92 3.49
2465 3605 4.878397 GCTCTTCCTTCTTAGCATTGCTAA 59.122 41.667 25.36 25.36 46.97 3.09
2466 3606 5.220758 GCTCTTCCTTCTTAGCATTGCTAAC 60.221 44.000 23.80 9.16 44.75 2.34
2467 3607 5.804639 TCTTCCTTCTTAGCATTGCTAACA 58.195 37.500 23.80 13.66 44.75 2.41
2468 3608 5.877012 TCTTCCTTCTTAGCATTGCTAACAG 59.123 40.000 23.80 20.59 44.75 3.16
2469 3609 5.165961 TCCTTCTTAGCATTGCTAACAGT 57.834 39.130 23.80 0.00 44.75 3.55
2470 3610 4.937620 TCCTTCTTAGCATTGCTAACAGTG 59.062 41.667 23.80 15.53 44.75 3.66
2477 3617 3.754188 CATTGCTAACAGTGCTCTTCC 57.246 47.619 0.00 0.00 0.00 3.46
2478 3618 3.341823 CATTGCTAACAGTGCTCTTCCT 58.658 45.455 0.00 0.00 0.00 3.36
2479 3619 3.492102 TTGCTAACAGTGCTCTTCCTT 57.508 42.857 0.00 0.00 0.00 3.36
2480 3620 3.045601 TGCTAACAGTGCTCTTCCTTC 57.954 47.619 0.00 0.00 0.00 3.46
2481 3621 2.634940 TGCTAACAGTGCTCTTCCTTCT 59.365 45.455 0.00 0.00 0.00 2.85
2482 3622 3.071602 TGCTAACAGTGCTCTTCCTTCTT 59.928 43.478 0.00 0.00 0.00 2.52
2483 3623 4.283467 TGCTAACAGTGCTCTTCCTTCTTA 59.717 41.667 0.00 0.00 0.00 2.10
2484 3624 4.867608 GCTAACAGTGCTCTTCCTTCTTAG 59.132 45.833 0.00 0.00 0.00 2.18
2485 3625 3.326836 ACAGTGCTCTTCCTTCTTAGC 57.673 47.619 0.00 0.00 35.51 3.09
2486 3626 2.634940 ACAGTGCTCTTCCTTCTTAGCA 59.365 45.455 0.00 0.00 42.41 3.49
2487 3627 3.262915 ACAGTGCTCTTCCTTCTTAGCAT 59.737 43.478 0.00 0.00 45.86 3.79
2488 3628 4.260170 CAGTGCTCTTCCTTCTTAGCATT 58.740 43.478 0.00 0.00 45.86 3.56
2489 3629 4.094590 CAGTGCTCTTCCTTCTTAGCATTG 59.905 45.833 0.00 0.00 45.86 2.82
2490 3630 3.012518 TGCTCTTCCTTCTTAGCATTGC 58.987 45.455 0.00 0.00 39.92 3.56
2491 3631 3.277715 GCTCTTCCTTCTTAGCATTGCT 58.722 45.455 16.63 16.63 43.41 3.91
2492 3632 4.080919 TGCTCTTCCTTCTTAGCATTGCTA 60.081 41.667 14.33 14.33 39.92 3.49
2493 3633 4.878397 GCTCTTCCTTCTTAGCATTGCTAA 59.122 41.667 25.36 25.36 46.97 3.09
2494 3634 5.220758 GCTCTTCCTTCTTAGCATTGCTAAC 60.221 44.000 23.80 9.16 44.75 2.34
2495 3635 5.804639 TCTTCCTTCTTAGCATTGCTAACA 58.195 37.500 23.80 13.66 44.75 2.41
2496 3636 5.877012 TCTTCCTTCTTAGCATTGCTAACAG 59.123 40.000 23.80 20.59 44.75 3.16
2497 3637 5.165961 TCCTTCTTAGCATTGCTAACAGT 57.834 39.130 23.80 0.00 44.75 3.55
2498 3638 4.937620 TCCTTCTTAGCATTGCTAACAGTG 59.062 41.667 23.80 15.53 44.75 3.66
2505 3645 3.754188 CATTGCTAACAGTGCTCTTCC 57.246 47.619 0.00 0.00 0.00 3.46
2506 3646 3.341823 CATTGCTAACAGTGCTCTTCCT 58.658 45.455 0.00 0.00 0.00 3.36
2507 3647 3.492102 TTGCTAACAGTGCTCTTCCTT 57.508 42.857 0.00 0.00 0.00 3.36
2508 3648 3.045601 TGCTAACAGTGCTCTTCCTTC 57.954 47.619 0.00 0.00 0.00 3.46
2509 3649 2.634940 TGCTAACAGTGCTCTTCCTTCT 59.365 45.455 0.00 0.00 0.00 2.85
2510 3650 3.071602 TGCTAACAGTGCTCTTCCTTCTT 59.928 43.478 0.00 0.00 0.00 2.52
2511 3651 4.283467 TGCTAACAGTGCTCTTCCTTCTTA 59.717 41.667 0.00 0.00 0.00 2.10
2512 3652 4.867608 GCTAACAGTGCTCTTCCTTCTTAG 59.132 45.833 0.00 0.00 0.00 2.18
2513 3653 3.326836 ACAGTGCTCTTCCTTCTTAGC 57.673 47.619 0.00 0.00 35.51 3.09
2514 3654 2.634940 ACAGTGCTCTTCCTTCTTAGCA 59.365 45.455 0.00 0.00 42.41 3.49
2515 3655 3.262915 ACAGTGCTCTTCCTTCTTAGCAT 59.737 43.478 0.00 0.00 45.86 3.79
2516 3656 4.260170 CAGTGCTCTTCCTTCTTAGCATT 58.740 43.478 0.00 0.00 45.86 3.56
2517 3657 4.094590 CAGTGCTCTTCCTTCTTAGCATTG 59.905 45.833 0.00 0.00 45.86 2.82
2518 3658 3.012518 TGCTCTTCCTTCTTAGCATTGC 58.987 45.455 0.00 0.00 39.92 3.56
2519 3659 3.277715 GCTCTTCCTTCTTAGCATTGCT 58.722 45.455 16.63 16.63 43.41 3.91
2520 3660 4.080919 TGCTCTTCCTTCTTAGCATTGCTA 60.081 41.667 14.33 14.33 39.92 3.49
2521 3661 4.878397 GCTCTTCCTTCTTAGCATTGCTAA 59.122 41.667 25.36 25.36 46.97 3.09
2522 3662 5.220758 GCTCTTCCTTCTTAGCATTGCTAAC 60.221 44.000 23.80 9.16 44.75 2.34
2523 3663 5.804639 TCTTCCTTCTTAGCATTGCTAACA 58.195 37.500 23.80 13.66 44.75 2.41
2524 3664 5.877012 TCTTCCTTCTTAGCATTGCTAACAG 59.123 40.000 23.80 20.59 44.75 3.16
2525 3665 5.165961 TCCTTCTTAGCATTGCTAACAGT 57.834 39.130 23.80 0.00 44.75 3.55
2526 3666 4.937620 TCCTTCTTAGCATTGCTAACAGTG 59.062 41.667 23.80 15.53 44.75 3.66
2535 3675 5.376854 CATTGCTAACAGTGCTTTACCTT 57.623 39.130 0.00 0.00 0.00 3.50
2536 3676 5.393962 CATTGCTAACAGTGCTTTACCTTC 58.606 41.667 0.00 0.00 0.00 3.46
2537 3677 4.351874 TGCTAACAGTGCTTTACCTTCT 57.648 40.909 0.00 0.00 0.00 2.85
2538 3678 4.714632 TGCTAACAGTGCTTTACCTTCTT 58.285 39.130 0.00 0.00 0.00 2.52
2539 3679 5.860611 TGCTAACAGTGCTTTACCTTCTTA 58.139 37.500 0.00 0.00 0.00 2.10
2540 3680 5.932303 TGCTAACAGTGCTTTACCTTCTTAG 59.068 40.000 0.00 0.00 0.00 2.18
2541 3681 5.163844 GCTAACAGTGCTTTACCTTCTTAGC 60.164 44.000 0.00 0.00 0.00 3.09
2542 3682 4.351874 ACAGTGCTTTACCTTCTTAGCA 57.648 40.909 0.00 0.00 41.01 3.49
2543 3683 4.911390 ACAGTGCTTTACCTTCTTAGCAT 58.089 39.130 0.00 0.00 44.52 3.79
2544 3684 5.316987 ACAGTGCTTTACCTTCTTAGCATT 58.683 37.500 0.00 0.00 44.52 3.56
2545 3685 5.634896 CAGTGCTTTACCTTCTTAGCATTG 58.365 41.667 0.00 0.00 44.52 2.82
2546 3686 4.156739 AGTGCTTTACCTTCTTAGCATTGC 59.843 41.667 0.00 0.00 44.52 3.56
2547 3687 4.156739 GTGCTTTACCTTCTTAGCATTGCT 59.843 41.667 16.63 16.63 44.52 3.91
2548 3688 5.354234 GTGCTTTACCTTCTTAGCATTGCTA 59.646 40.000 14.33 14.33 44.52 3.49
2549 3689 5.943416 TGCTTTACCTTCTTAGCATTGCTAA 59.057 36.000 25.36 25.36 46.97 3.09
2550 3690 6.128007 TGCTTTACCTTCTTAGCATTGCTAAC 60.128 38.462 23.80 12.42 44.75 2.34
2551 3691 6.128007 GCTTTACCTTCTTAGCATTGCTAACA 60.128 38.462 23.80 13.66 44.75 2.41
2552 3692 6.985188 TTACCTTCTTAGCATTGCTAACAG 57.015 37.500 23.80 20.59 44.75 3.16
2553 3693 4.911390 ACCTTCTTAGCATTGCTAACAGT 58.089 39.130 23.80 15.95 44.75 3.55
2554 3694 4.697352 ACCTTCTTAGCATTGCTAACAGTG 59.303 41.667 23.80 15.53 44.75 3.66
2573 3713 5.634896 CAGTGCTTTACCTTCTTAGCATTG 58.365 41.667 0.00 0.00 44.52 2.82
2574 3714 5.182001 CAGTGCTTTACCTTCTTAGCATTGT 59.818 40.000 0.00 0.00 44.52 2.71
2578 3718 7.537649 GTGCTTTACCTTCTTAGCATTGTTAAC 59.462 37.037 0.00 0.00 44.52 2.01
2582 3731 6.560253 ACCTTCTTAGCATTGTTAACAGTG 57.440 37.500 22.81 22.81 36.76 3.66
2593 3742 6.378582 CATTGTTAACAGTGCTAAATCCGTT 58.621 36.000 16.89 0.00 0.00 4.44
2594 3743 5.351233 TGTTAACAGTGCTAAATCCGTTG 57.649 39.130 3.59 0.00 0.00 4.10
2595 3744 5.057819 TGTTAACAGTGCTAAATCCGTTGA 58.942 37.500 3.59 0.00 0.00 3.18
2596 3745 5.703592 TGTTAACAGTGCTAAATCCGTTGAT 59.296 36.000 3.59 0.00 0.00 2.57
2597 3746 4.685169 AACAGTGCTAAATCCGTTGATG 57.315 40.909 0.00 0.00 0.00 3.07
2598 3747 3.937814 ACAGTGCTAAATCCGTTGATGA 58.062 40.909 0.00 0.00 0.00 2.92
2601 3750 6.112734 ACAGTGCTAAATCCGTTGATGATAA 58.887 36.000 0.00 0.00 0.00 1.75
2602 3751 6.767902 ACAGTGCTAAATCCGTTGATGATAAT 59.232 34.615 0.00 0.00 0.00 1.28
2603 3752 7.073883 CAGTGCTAAATCCGTTGATGATAATG 58.926 38.462 0.00 0.00 0.00 1.90
2640 3789 7.284489 TGTTGTTTCAAAGTCCATAAACTAGCT 59.716 33.333 0.00 0.00 33.89 3.32
2641 3790 7.202016 TGTTTCAAAGTCCATAAACTAGCTG 57.798 36.000 0.00 0.00 33.89 4.24
2650 3799 3.763897 CCATAAACTAGCTGGGTTTGCTT 59.236 43.478 21.73 9.76 41.46 3.91
2656 3805 4.265073 ACTAGCTGGGTTTGCTTTATCTG 58.735 43.478 0.85 0.00 41.46 2.90
2658 3807 3.084786 AGCTGGGTTTGCTTTATCTGAC 58.915 45.455 0.00 0.00 37.52 3.51
2659 3808 2.164422 GCTGGGTTTGCTTTATCTGACC 59.836 50.000 0.00 0.00 0.00 4.02
2661 3810 4.082125 CTGGGTTTGCTTTATCTGACCTT 58.918 43.478 0.00 0.00 0.00 3.50
2662 3811 4.479158 TGGGTTTGCTTTATCTGACCTTT 58.521 39.130 0.00 0.00 0.00 3.11
2663 3812 4.898861 TGGGTTTGCTTTATCTGACCTTTT 59.101 37.500 0.00 0.00 0.00 2.27
2664 3813 6.071984 TGGGTTTGCTTTATCTGACCTTTTA 58.928 36.000 0.00 0.00 0.00 1.52
2666 3815 7.234577 TGGGTTTGCTTTATCTGACCTTTTATT 59.765 33.333 0.00 0.00 0.00 1.40
2840 3989 2.584391 GGACCTCGCTCCACCAACT 61.584 63.158 0.00 0.00 0.00 3.16
2924 4073 0.729116 CATACGTTGCTCCAAGGCTG 59.271 55.000 0.00 0.00 33.25 4.85
3128 4277 1.001706 GGCTTTGGGTTCGTCAACTTC 60.002 52.381 0.00 0.00 32.50 3.01
3241 4394 4.817286 AGGCCTACTTAGTTACTGCCTAT 58.183 43.478 1.29 0.00 45.41 2.57
3311 4464 2.557317 ACCAGTACTTTTGTGTCGTGG 58.443 47.619 0.00 0.00 0.00 4.94
3357 4511 7.722363 TGTTGAGAATAACTACACTCTGTTGA 58.278 34.615 0.00 0.00 0.00 3.18
3432 4587 4.439305 TGCATACCTGTTGCTTCATTTC 57.561 40.909 0.00 0.00 40.77 2.17
3437 4592 4.749245 ACCTGTTGCTTCATTTCGTTAG 57.251 40.909 0.00 0.00 0.00 2.34
3503 4669 0.811616 AGAATCTGCCGATGCCGTTC 60.812 55.000 0.00 0.00 36.33 3.95
3542 4708 1.782569 TCGCGAACTTTGTGTAACTCG 59.217 47.619 6.20 0.00 38.04 4.18
3573 4749 1.308998 GGTGTCCTTGCCCGATAATG 58.691 55.000 0.00 0.00 0.00 1.90
3576 4752 2.115427 TGTCCTTGCCCGATAATGAGA 58.885 47.619 0.00 0.00 0.00 3.27
3607 4830 1.076332 GGTTCTCCCGTGACATTTCG 58.924 55.000 0.00 0.00 0.00 3.46
3624 4847 0.111832 TCGTGGTGACCAGTAGACCT 59.888 55.000 3.58 0.00 32.34 3.85
3625 4848 0.243907 CGTGGTGACCAGTAGACCTG 59.756 60.000 3.58 0.00 41.15 4.00
3626 4849 1.629043 GTGGTGACCAGTAGACCTGA 58.371 55.000 3.58 0.00 44.49 3.86
3627 4850 1.968493 GTGGTGACCAGTAGACCTGAA 59.032 52.381 3.58 0.00 44.49 3.02
3628 4851 2.367567 GTGGTGACCAGTAGACCTGAAA 59.632 50.000 3.58 0.00 44.49 2.69
3629 4852 2.632996 TGGTGACCAGTAGACCTGAAAG 59.367 50.000 0.00 0.00 44.49 2.62
3630 4853 2.897969 GGTGACCAGTAGACCTGAAAGA 59.102 50.000 0.00 0.00 44.49 2.52
3631 4854 3.323979 GGTGACCAGTAGACCTGAAAGAA 59.676 47.826 0.00 0.00 44.49 2.52
3632 4855 4.202326 GGTGACCAGTAGACCTGAAAGAAA 60.202 45.833 0.00 0.00 44.49 2.52
3633 4856 5.365619 GTGACCAGTAGACCTGAAAGAAAA 58.634 41.667 0.00 0.00 44.49 2.29
3634 4857 5.236695 GTGACCAGTAGACCTGAAAGAAAAC 59.763 44.000 0.00 0.00 44.49 2.43
3635 4858 5.104693 TGACCAGTAGACCTGAAAGAAAACA 60.105 40.000 0.00 0.00 44.49 2.83
3636 4859 5.751586 ACCAGTAGACCTGAAAGAAAACAA 58.248 37.500 0.00 0.00 44.49 2.83
3637 4860 5.589050 ACCAGTAGACCTGAAAGAAAACAAC 59.411 40.000 0.00 0.00 44.49 3.32
3638 4861 5.823045 CCAGTAGACCTGAAAGAAAACAACT 59.177 40.000 0.00 0.00 44.49 3.16
3639 4862 6.318900 CCAGTAGACCTGAAAGAAAACAACTT 59.681 38.462 0.00 0.00 44.49 2.66
3640 4863 7.410485 CAGTAGACCTGAAAGAAAACAACTTC 58.590 38.462 0.00 0.00 44.49 3.01
3641 4864 7.281100 CAGTAGACCTGAAAGAAAACAACTTCT 59.719 37.037 0.00 0.00 44.49 2.85
3642 4865 6.442513 AGACCTGAAAGAAAACAACTTCTG 57.557 37.500 0.00 0.00 35.79 3.02
3643 4866 5.946377 AGACCTGAAAGAAAACAACTTCTGT 59.054 36.000 0.00 0.00 36.08 3.41
3644 4867 6.094186 AGACCTGAAAGAAAACAACTTCTGTC 59.906 38.462 0.00 0.00 39.32 3.51
3645 4868 5.710099 ACCTGAAAGAAAACAACTTCTGTCA 59.290 36.000 6.16 6.16 44.10 3.58
3646 4869 6.030228 CCTGAAAGAAAACAACTTCTGTCAC 58.970 40.000 2.71 0.00 42.33 3.67
3647 4870 6.127897 CCTGAAAGAAAACAACTTCTGTCACT 60.128 38.462 2.71 0.00 42.33 3.41
3648 4871 6.842163 TGAAAGAAAACAACTTCTGTCACTC 58.158 36.000 2.71 0.00 42.33 3.51
3649 4872 6.429692 TGAAAGAAAACAACTTCTGTCACTCA 59.570 34.615 2.71 0.00 42.33 3.41
3650 4873 6.817765 AAGAAAACAACTTCTGTCACTCAA 57.182 33.333 0.00 0.00 37.23 3.02
3651 4874 6.428385 AGAAAACAACTTCTGTCACTCAAG 57.572 37.500 0.00 0.00 37.23 3.02
3652 4875 4.622701 AAACAACTTCTGTCACTCAAGC 57.377 40.909 0.00 0.00 37.23 4.01
3653 4876 3.266510 ACAACTTCTGTCACTCAAGCA 57.733 42.857 0.00 0.00 29.87 3.91
3654 4877 2.939103 ACAACTTCTGTCACTCAAGCAC 59.061 45.455 0.00 0.00 29.87 4.40
3655 4878 3.201290 CAACTTCTGTCACTCAAGCACT 58.799 45.455 0.00 0.00 0.00 4.40
3656 4879 2.831333 ACTTCTGTCACTCAAGCACTG 58.169 47.619 0.00 0.00 0.00 3.66
3657 4880 2.432146 ACTTCTGTCACTCAAGCACTGA 59.568 45.455 0.00 0.00 0.00 3.41
3658 4881 3.118629 ACTTCTGTCACTCAAGCACTGAA 60.119 43.478 0.00 0.00 32.17 3.02
3659 4882 3.541996 TCTGTCACTCAAGCACTGAAA 57.458 42.857 0.00 0.00 32.17 2.69
3660 4883 4.077300 TCTGTCACTCAAGCACTGAAAT 57.923 40.909 0.00 0.00 32.17 2.17
3661 4884 4.060900 TCTGTCACTCAAGCACTGAAATC 58.939 43.478 0.00 0.00 32.17 2.17
3662 4885 3.141398 TGTCACTCAAGCACTGAAATCC 58.859 45.455 0.00 0.00 32.17 3.01
3663 4886 2.158449 GTCACTCAAGCACTGAAATCCG 59.842 50.000 0.00 0.00 32.17 4.18
3664 4887 2.146342 CACTCAAGCACTGAAATCCGT 58.854 47.619 0.00 0.00 32.17 4.69
3665 4888 2.158449 CACTCAAGCACTGAAATCCGTC 59.842 50.000 0.00 0.00 32.17 4.79
3666 4889 2.037772 ACTCAAGCACTGAAATCCGTCT 59.962 45.455 0.00 0.00 32.17 4.18
3667 4890 3.070018 CTCAAGCACTGAAATCCGTCTT 58.930 45.455 0.00 0.00 32.17 3.01
3668 4891 2.807967 TCAAGCACTGAAATCCGTCTTG 59.192 45.455 0.00 0.00 0.00 3.02
3669 4892 1.813513 AGCACTGAAATCCGTCTTGG 58.186 50.000 0.00 0.00 40.09 3.61
3670 4893 1.072331 AGCACTGAAATCCGTCTTGGT 59.928 47.619 0.00 0.00 39.52 3.67
3671 4894 1.464997 GCACTGAAATCCGTCTTGGTC 59.535 52.381 0.00 0.00 39.52 4.02
3672 4895 2.872038 GCACTGAAATCCGTCTTGGTCT 60.872 50.000 0.00 0.00 39.52 3.85
3673 4896 3.403038 CACTGAAATCCGTCTTGGTCTT 58.597 45.455 0.00 0.00 39.52 3.01
3674 4897 3.187227 CACTGAAATCCGTCTTGGTCTTG 59.813 47.826 0.00 0.00 39.52 3.02
3675 4898 3.071023 ACTGAAATCCGTCTTGGTCTTGA 59.929 43.478 0.00 0.00 39.52 3.02
3676 4899 4.256920 CTGAAATCCGTCTTGGTCTTGAT 58.743 43.478 0.00 0.00 39.52 2.57
3677 4900 5.046591 ACTGAAATCCGTCTTGGTCTTGATA 60.047 40.000 0.00 0.00 39.52 2.15
3678 4901 5.175859 TGAAATCCGTCTTGGTCTTGATAC 58.824 41.667 0.00 0.00 39.52 2.24
3705 4932 4.258543 AGAAAACAACTTCCGTCACTCAA 58.741 39.130 0.00 0.00 0.00 3.02
3706 4933 4.332819 AGAAAACAACTTCCGTCACTCAAG 59.667 41.667 0.00 0.00 0.00 3.02
3707 4934 1.583054 ACAACTTCCGTCACTCAAGC 58.417 50.000 0.00 0.00 0.00 4.01
3708 4935 1.134521 ACAACTTCCGTCACTCAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
3709 4936 1.261619 CAACTTCCGTCACTCAAGCAC 59.738 52.381 0.00 0.00 0.00 4.40
3710 4937 0.753262 ACTTCCGTCACTCAAGCACT 59.247 50.000 0.00 0.00 0.00 4.40
3711 4938 1.961394 ACTTCCGTCACTCAAGCACTA 59.039 47.619 0.00 0.00 0.00 2.74
3723 4950 4.452455 ACTCAAGCACTAAAATCCGTCTTG 59.548 41.667 0.00 0.00 0.00 3.02
3724 4951 4.637276 TCAAGCACTAAAATCCGTCTTGA 58.363 39.130 0.00 0.00 36.93 3.02
3725 4952 5.245531 TCAAGCACTAAAATCCGTCTTGAT 58.754 37.500 0.00 0.00 35.12 2.57
3726 4953 6.403049 TCAAGCACTAAAATCCGTCTTGATA 58.597 36.000 0.00 0.00 35.12 2.15
3727 4954 6.312918 TCAAGCACTAAAATCCGTCTTGATAC 59.687 38.462 0.00 0.00 35.12 2.24
3728 4955 5.978814 AGCACTAAAATCCGTCTTGATACT 58.021 37.500 0.00 0.00 0.00 2.12
3729 4956 5.812642 AGCACTAAAATCCGTCTTGATACTG 59.187 40.000 0.00 0.00 0.00 2.74
3730 4957 5.810587 GCACTAAAATCCGTCTTGATACTGA 59.189 40.000 0.00 0.00 0.00 3.41
3731 4958 6.312918 GCACTAAAATCCGTCTTGATACTGAA 59.687 38.462 0.00 0.00 0.00 3.02
3732 4959 7.148474 GCACTAAAATCCGTCTTGATACTGAAA 60.148 37.037 0.00 0.00 0.00 2.69
3733 4960 8.383619 CACTAAAATCCGTCTTGATACTGAAAG 58.616 37.037 0.00 0.00 42.29 2.62
3734 4961 8.311836 ACTAAAATCCGTCTTGATACTGAAAGA 58.688 33.333 0.00 0.00 37.43 2.52
3735 4962 7.979444 AAAATCCGTCTTGATACTGAAAGAA 57.021 32.000 0.00 0.00 37.43 2.52
3736 4963 7.979444 AAATCCGTCTTGATACTGAAAGAAA 57.021 32.000 0.00 0.00 37.43 2.52
3737 4964 7.979444 AATCCGTCTTGATACTGAAAGAAAA 57.021 32.000 0.00 0.00 37.43 2.29
3738 4965 6.780706 TCCGTCTTGATACTGAAAGAAAAC 57.219 37.500 0.00 0.00 37.43 2.43
3739 4966 6.285224 TCCGTCTTGATACTGAAAGAAAACA 58.715 36.000 0.00 0.00 37.43 2.83
3740 4967 6.764085 TCCGTCTTGATACTGAAAGAAAACAA 59.236 34.615 0.00 0.00 37.43 2.83
3741 4968 6.851330 CCGTCTTGATACTGAAAGAAAACAAC 59.149 38.462 0.00 0.00 37.43 3.32
3742 4969 7.254795 CCGTCTTGATACTGAAAGAAAACAACT 60.255 37.037 0.00 0.00 37.43 3.16
3743 4970 8.122952 CGTCTTGATACTGAAAGAAAACAACTT 58.877 33.333 0.00 0.00 37.43 2.66
3744 4971 9.439537 GTCTTGATACTGAAAGAAAACAACTTC 57.560 33.333 0.00 0.00 37.43 3.01
3745 4972 8.621286 TCTTGATACTGAAAGAAAACAACTTCC 58.379 33.333 0.00 0.00 37.43 3.46
3746 4973 6.954944 TGATACTGAAAGAAAACAACTTCCG 58.045 36.000 0.00 0.00 37.43 4.30
3747 4974 6.540914 TGATACTGAAAGAAAACAACTTCCGT 59.459 34.615 0.00 0.00 37.43 4.69
3748 4975 5.231265 ACTGAAAGAAAACAACTTCCGTC 57.769 39.130 0.00 0.00 37.43 4.79
3749 4976 4.698304 ACTGAAAGAAAACAACTTCCGTCA 59.302 37.500 0.00 0.00 37.43 4.35
3750 4977 4.976987 TGAAAGAAAACAACTTCCGTCAC 58.023 39.130 0.00 0.00 0.00 3.67
3751 4978 4.698304 TGAAAGAAAACAACTTCCGTCACT 59.302 37.500 0.00 0.00 0.00 3.41
3752 4979 4.877323 AAGAAAACAACTTCCGTCACTC 57.123 40.909 0.00 0.00 0.00 3.51
3753 4980 3.869065 AGAAAACAACTTCCGTCACTCA 58.131 40.909 0.00 0.00 0.00 3.41
3754 4981 4.258543 AGAAAACAACTTCCGTCACTCAA 58.741 39.130 0.00 0.00 0.00 3.02
3755 4982 4.332819 AGAAAACAACTTCCGTCACTCAAG 59.667 41.667 0.00 0.00 0.00 3.02
3756 4983 1.583054 ACAACTTCCGTCACTCAAGC 58.417 50.000 0.00 0.00 0.00 4.01
3757 4984 1.134521 ACAACTTCCGTCACTCAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
3758 4985 1.261619 CAACTTCCGTCACTCAAGCAC 59.738 52.381 0.00 0.00 0.00 4.40
3759 4986 0.753262 ACTTCCGTCACTCAAGCACT 59.247 50.000 0.00 0.00 0.00 4.40
3760 4987 1.143305 CTTCCGTCACTCAAGCACTG 58.857 55.000 0.00 0.00 0.00 3.66
3761 4988 0.750249 TTCCGTCACTCAAGCACTGA 59.250 50.000 0.00 0.00 0.00 3.41
3762 4989 0.750249 TCCGTCACTCAAGCACTGAA 59.250 50.000 0.00 0.00 32.17 3.02
3763 4990 1.138069 TCCGTCACTCAAGCACTGAAA 59.862 47.619 0.00 0.00 32.17 2.69
3764 4991 2.146342 CCGTCACTCAAGCACTGAAAT 58.854 47.619 0.00 0.00 32.17 2.17
3765 4992 2.158449 CCGTCACTCAAGCACTGAAATC 59.842 50.000 0.00 0.00 32.17 2.17
3766 4993 2.158449 CGTCACTCAAGCACTGAAATCC 59.842 50.000 0.00 0.00 32.17 3.01
3767 4994 2.158449 GTCACTCAAGCACTGAAATCCG 59.842 50.000 0.00 0.00 32.17 4.18
3768 4995 1.135859 CACTCAAGCACTGAAATCCGC 60.136 52.381 0.00 0.00 32.17 5.54
3769 4996 0.449388 CTCAAGCACTGAAATCCGCC 59.551 55.000 0.00 0.00 32.17 6.13
3770 4997 0.036732 TCAAGCACTGAAATCCGCCT 59.963 50.000 0.00 0.00 0.00 5.52
3807 5034 1.809207 GGCAATTGATGTGGGACGG 59.191 57.895 10.34 0.00 0.00 4.79
3821 5048 2.914278 TGGGACGGAGGGAATAGAAAAA 59.086 45.455 0.00 0.00 0.00 1.94
3822 5049 3.054655 TGGGACGGAGGGAATAGAAAAAG 60.055 47.826 0.00 0.00 0.00 2.27
3823 5050 3.199289 GGGACGGAGGGAATAGAAAAAGA 59.801 47.826 0.00 0.00 0.00 2.52
3824 5051 4.443621 GGACGGAGGGAATAGAAAAAGAG 58.556 47.826 0.00 0.00 0.00 2.85
3825 5052 4.081031 GGACGGAGGGAATAGAAAAAGAGT 60.081 45.833 0.00 0.00 0.00 3.24
3826 5053 5.128335 GGACGGAGGGAATAGAAAAAGAGTA 59.872 44.000 0.00 0.00 0.00 2.59
3827 5054 6.183360 GGACGGAGGGAATAGAAAAAGAGTAT 60.183 42.308 0.00 0.00 0.00 2.12
3828 5055 6.818233 ACGGAGGGAATAGAAAAAGAGTATC 58.182 40.000 0.00 0.00 0.00 2.24
3937 5165 3.460857 AAAACGTCTCTCAACTCTGCT 57.539 42.857 0.00 0.00 0.00 4.24
3956 5184 2.618709 GCTGAATGGTATGGCCTGTAAC 59.381 50.000 3.32 0.00 38.35 2.50
3957 5185 3.685550 GCTGAATGGTATGGCCTGTAACT 60.686 47.826 3.32 0.00 38.35 2.24
3958 5186 4.130118 CTGAATGGTATGGCCTGTAACTC 58.870 47.826 3.32 0.00 38.35 3.01
3959 5187 3.780294 TGAATGGTATGGCCTGTAACTCT 59.220 43.478 3.32 0.00 38.35 3.24
3988 5216 1.607713 CTCACGTCTGTACAGCGAAG 58.392 55.000 31.94 25.33 34.06 3.79
4012 5240 3.112709 GCGCTCGAACCTGGTCAC 61.113 66.667 0.00 0.00 0.00 3.67
4035 5263 5.163023 ACCATCCATCTTCCATGATCATTCA 60.163 40.000 5.16 0.00 36.00 2.57
4053 5284 1.011019 ATCGTCGTCGTCGAGATGC 60.011 57.895 18.55 0.00 46.96 3.91
4158 5389 1.299976 GCCCCTCGTCTTCACCATT 59.700 57.895 0.00 0.00 0.00 3.16
4212 5443 3.625897 TGCACCTCCACGTCCTGG 61.626 66.667 0.00 0.00 42.29 4.45
4239 5470 4.717629 CGCAGCGGGAACTCGTGA 62.718 66.667 7.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 0.178068 GGGAAGCGCCAGATCTACAA 59.822 55.000 2.29 0.00 38.95 2.41
274 300 4.759693 TGATAATCAAACCGTATGATGGGC 59.240 41.667 0.00 0.00 37.58 5.36
494 520 4.357947 GAGGCGGCGCGATGGATA 62.358 66.667 26.95 0.00 0.00 2.59
527 555 0.652465 GACGACGTGGTTTTCAACGC 60.652 55.000 4.58 0.00 0.00 4.84
599 627 1.694696 GAATTCAGGGCCTACGGATCT 59.305 52.381 5.28 0.00 0.00 2.75
879 919 3.512516 GAACCAGCTGGCCGATGC 61.513 66.667 33.06 8.13 39.32 3.91
880 920 2.825836 GGAACCAGCTGGCCGATG 60.826 66.667 33.06 8.35 39.32 3.84
881 921 4.473520 CGGAACCAGCTGGCCGAT 62.474 66.667 35.39 20.37 41.47 4.18
883 923 4.473520 ATCGGAACCAGCTGGCCG 62.474 66.667 33.84 33.84 40.67 6.13
884 924 2.514824 GATCGGAACCAGCTGGCC 60.515 66.667 33.06 24.36 39.32 5.36
885 925 2.514824 GGATCGGAACCAGCTGGC 60.515 66.667 33.06 17.24 39.32 4.85
895 935 2.227757 TGGGCCTTGTTGGATCGGA 61.228 57.895 4.53 0.00 38.35 4.55
896 936 2.046285 GTGGGCCTTGTTGGATCGG 61.046 63.158 4.53 0.00 38.35 4.18
898 938 0.967380 CAGGTGGGCCTTGTTGGATC 60.967 60.000 4.53 0.00 44.18 3.36
919 959 0.445436 CTCAGTTCTCCAACATGCGC 59.555 55.000 0.00 0.00 34.60 6.09
929 969 2.029828 TCGGAAGCAAGTCTCAGTTCTC 60.030 50.000 0.00 0.00 0.00 2.87
931 971 2.440539 TCGGAAGCAAGTCTCAGTTC 57.559 50.000 0.00 0.00 0.00 3.01
933 973 2.447244 CTTCGGAAGCAAGTCTCAGT 57.553 50.000 4.57 0.00 0.00 3.41
1119 1164 2.963854 CATGGCTACCGCTCGCTG 60.964 66.667 0.00 0.00 36.09 5.18
1505 1608 2.082231 CAGCAATCCACACCAAGAGAG 58.918 52.381 0.00 0.00 0.00 3.20
1506 1609 1.421268 ACAGCAATCCACACCAAGAGA 59.579 47.619 0.00 0.00 0.00 3.10
1512 1615 2.024414 GGGATAACAGCAATCCACACC 58.976 52.381 4.62 0.00 44.08 4.16
1515 1618 2.301346 CAGGGGATAACAGCAATCCAC 58.699 52.381 4.62 0.42 45.78 4.02
1522 1625 2.938956 ATGCTACAGGGGATAACAGC 57.061 50.000 0.00 0.00 0.00 4.40
1529 1632 5.074746 TGACTCTATAATGCTACAGGGGA 57.925 43.478 0.00 0.00 0.00 4.81
1530 1633 5.540337 TCTTGACTCTATAATGCTACAGGGG 59.460 44.000 0.00 0.00 0.00 4.79
1531 1634 6.656632 TCTTGACTCTATAATGCTACAGGG 57.343 41.667 0.00 0.00 0.00 4.45
1532 1635 7.601886 CCAATCTTGACTCTATAATGCTACAGG 59.398 40.741 0.00 0.00 0.00 4.00
1533 1636 7.601886 CCCAATCTTGACTCTATAATGCTACAG 59.398 40.741 0.00 0.00 0.00 2.74
1534 1637 7.445121 CCCAATCTTGACTCTATAATGCTACA 58.555 38.462 0.00 0.00 0.00 2.74
1536 1639 6.787458 TCCCCAATCTTGACTCTATAATGCTA 59.213 38.462 0.00 0.00 0.00 3.49
1537 1640 5.608437 TCCCCAATCTTGACTCTATAATGCT 59.392 40.000 0.00 0.00 0.00 3.79
1538 1641 5.869579 TCCCCAATCTTGACTCTATAATGC 58.130 41.667 0.00 0.00 0.00 3.56
1539 1642 7.108847 GGATCCCCAATCTTGACTCTATAATG 58.891 42.308 0.00 0.00 34.56 1.90
1540 1643 6.794493 TGGATCCCCAATCTTGACTCTATAAT 59.206 38.462 9.90 0.00 40.09 1.28
1541 1644 6.043243 GTGGATCCCCAATCTTGACTCTATAA 59.957 42.308 9.90 0.00 45.59 0.98
1542 1645 5.544176 GTGGATCCCCAATCTTGACTCTATA 59.456 44.000 9.90 0.00 45.59 1.31
1543 1646 4.349342 GTGGATCCCCAATCTTGACTCTAT 59.651 45.833 9.90 0.00 45.59 1.98
1544 1647 3.711704 GTGGATCCCCAATCTTGACTCTA 59.288 47.826 9.90 0.00 45.59 2.43
1545 1648 2.507471 GTGGATCCCCAATCTTGACTCT 59.493 50.000 9.90 0.00 45.59 3.24
1546 1649 2.239654 TGTGGATCCCCAATCTTGACTC 59.760 50.000 9.90 0.00 45.59 3.36
1547 1650 2.278245 TGTGGATCCCCAATCTTGACT 58.722 47.619 9.90 0.00 45.59 3.41
1548 1651 2.806945 TGTGGATCCCCAATCTTGAC 57.193 50.000 9.90 0.00 45.59 3.18
1549 1652 2.851821 TCATGTGGATCCCCAATCTTGA 59.148 45.455 9.90 1.42 45.59 3.02
1550 1653 3.301794 TCATGTGGATCCCCAATCTTG 57.698 47.619 9.90 0.00 45.59 3.02
1551 1654 3.270433 AGTTCATGTGGATCCCCAATCTT 59.730 43.478 9.90 0.00 45.59 2.40
1552 1655 2.854967 AGTTCATGTGGATCCCCAATCT 59.145 45.455 9.90 0.00 45.59 2.40
1553 1656 2.954318 CAGTTCATGTGGATCCCCAATC 59.046 50.000 9.90 0.00 45.59 2.67
1554 1657 2.358510 CCAGTTCATGTGGATCCCCAAT 60.359 50.000 9.90 0.00 45.59 3.16
1555 1658 1.005805 CCAGTTCATGTGGATCCCCAA 59.994 52.381 9.90 0.00 45.59 4.12
1566 1669 1.452110 TGGATCAACGCCAGTTCATG 58.548 50.000 0.00 0.00 38.79 3.07
1567 1670 2.198827 TTGGATCAACGCCAGTTCAT 57.801 45.000 0.00 0.00 38.79 2.57
1598 1701 1.519234 CGCAGCAGCTGACGGAATA 60.519 57.895 27.39 0.00 39.10 1.75
1601 1704 2.225791 ATAACGCAGCAGCTGACGGA 62.226 55.000 29.99 22.00 39.10 4.69
1603 1706 1.346197 CATAACGCAGCAGCTGACG 59.654 57.895 27.39 27.25 39.10 4.35
1609 1712 4.864916 ATCACTAAACATAACGCAGCAG 57.135 40.909 0.00 0.00 0.00 4.24
1677 1783 0.984230 TCCTTCCAGCAACCTACCAG 59.016 55.000 0.00 0.00 0.00 4.00
1687 1793 5.529060 CCAATCTATTTACTGTCCTTCCAGC 59.471 44.000 0.00 0.00 35.83 4.85
1703 1809 6.617782 ACTGCATCATAGCTACCAATCTAT 57.382 37.500 0.00 0.00 34.99 1.98
1704 1810 6.071334 GGTACTGCATCATAGCTACCAATCTA 60.071 42.308 0.00 0.00 34.99 1.98
1705 1811 4.970860 ACTGCATCATAGCTACCAATCT 57.029 40.909 0.00 0.00 34.99 2.40
1707 1813 4.263068 GGGTACTGCATCATAGCTACCAAT 60.263 45.833 0.00 0.00 34.99 3.16
1708 1814 3.071023 GGGTACTGCATCATAGCTACCAA 59.929 47.826 0.00 0.00 34.99 3.67
1709 1815 2.632996 GGGTACTGCATCATAGCTACCA 59.367 50.000 0.00 0.00 34.99 3.25
1710 1816 2.632996 TGGGTACTGCATCATAGCTACC 59.367 50.000 0.00 0.00 34.99 3.18
1723 1857 3.053831 ACGGAGAAATGTTGGGTACTG 57.946 47.619 0.00 0.00 0.00 2.74
1730 1864 6.423862 TCGAAAAACTTACGGAGAAATGTTG 58.576 36.000 0.00 0.00 0.00 3.33
1742 1876 9.015577 TCAAAACACATCAATCGAAAAACTTAC 57.984 29.630 0.00 0.00 0.00 2.34
1779 1914 0.620990 TCTGCCCCCGTACCCAATAA 60.621 55.000 0.00 0.00 0.00 1.40
1790 1937 1.005450 TGAAACTGGTATTCTGCCCCC 59.995 52.381 0.00 0.00 0.00 5.40
1829 1977 1.808411 TTGCGGCTTCTCTAAACTGG 58.192 50.000 0.00 0.00 0.00 4.00
1830 1978 3.436704 TCAATTGCGGCTTCTCTAAACTG 59.563 43.478 0.00 0.00 0.00 3.16
1835 1987 4.458989 ACAAATTCAATTGCGGCTTCTCTA 59.541 37.500 0.00 0.00 33.52 2.43
1844 2010 4.034975 ACAACCCAAACAAATTCAATTGCG 59.965 37.500 0.00 0.00 33.52 4.85
1853 2019 3.697045 TCGAACTCACAACCCAAACAAAT 59.303 39.130 0.00 0.00 0.00 2.32
1857 2023 1.602377 CCTCGAACTCACAACCCAAAC 59.398 52.381 0.00 0.00 0.00 2.93
1862 2028 1.617357 ACCTACCTCGAACTCACAACC 59.383 52.381 0.00 0.00 0.00 3.77
1871 2037 2.885616 ACCTGAAGAACCTACCTCGAA 58.114 47.619 0.00 0.00 0.00 3.71
1874 2045 4.527427 ACAGTTACCTGAAGAACCTACCTC 59.473 45.833 0.00 0.00 41.50 3.85
1877 2048 6.990939 AGAAAACAGTTACCTGAAGAACCTAC 59.009 38.462 0.00 0.00 41.50 3.18
1888 2059 9.117183 CCTAACTAAAACAGAAAACAGTTACCT 57.883 33.333 0.00 0.00 0.00 3.08
1890 2061 7.585210 CGCCTAACTAAAACAGAAAACAGTTAC 59.415 37.037 0.00 0.00 0.00 2.50
1894 2066 5.449304 CCGCCTAACTAAAACAGAAAACAG 58.551 41.667 0.00 0.00 0.00 3.16
1896 2068 4.276678 ACCCGCCTAACTAAAACAGAAAAC 59.723 41.667 0.00 0.00 0.00 2.43
1898 2070 3.816523 CACCCGCCTAACTAAAACAGAAA 59.183 43.478 0.00 0.00 0.00 2.52
1925 2097 1.197721 GTGCCTGCACACAACATACTC 59.802 52.381 16.95 0.00 45.53 2.59
1936 2108 1.202222 GCATTCTACATGTGCCTGCAC 60.202 52.381 15.15 15.15 46.33 4.57
1944 2116 4.395625 CCATGATCAGGCATTCTACATGT 58.604 43.478 2.69 2.69 33.34 3.21
1988 2160 1.186917 CCCCCAAATCAGCAGTGCAA 61.187 55.000 19.20 5.15 0.00 4.08
2003 2175 7.116736 TCAAAAGATAATTCTTCTGTACCCCC 58.883 38.462 0.00 0.00 41.42 5.40
2006 2178 9.508567 GCATTCAAAAGATAATTCTTCTGTACC 57.491 33.333 0.00 0.00 41.42 3.34
2022 2194 7.532571 TCTGATGACAGTAATGCATTCAAAAG 58.467 34.615 16.86 9.26 43.81 2.27
2023 2195 7.391275 TCTCTGATGACAGTAATGCATTCAAAA 59.609 33.333 16.86 0.00 43.81 2.44
2031 2203 2.793790 CGCTCTCTGATGACAGTAATGC 59.206 50.000 0.00 0.00 43.81 3.56
2064 2236 6.443849 ACCACTAGATAGGAAACTGGAATGAA 59.556 38.462 0.00 0.00 43.88 2.57
2084 2256 9.357161 TGGTTTTTAGTAAACATAATCACCACT 57.643 29.630 0.00 0.00 32.04 4.00
2102 2274 8.608844 AACACACAAGTCAATTTTGGTTTTTA 57.391 26.923 0.00 0.00 0.00 1.52
2114 2286 8.300286 TCATCTAAAACAAAACACACAAGTCAA 58.700 29.630 0.00 0.00 0.00 3.18
2116 2288 8.856490 ATCATCTAAAACAAAACACACAAGTC 57.144 30.769 0.00 0.00 0.00 3.01
2117 2289 9.651913 AAATCATCTAAAACAAAACACACAAGT 57.348 25.926 0.00 0.00 0.00 3.16
2144 2826 9.979578 CTCAAGAAATAGAATATCTACAGCAGT 57.020 33.333 0.00 0.00 30.79 4.40
2164 2846 7.468768 CGCATCCTACATTAACTCTACTCAAGA 60.469 40.741 0.00 0.00 0.00 3.02
2165 2847 6.638873 CGCATCCTACATTAACTCTACTCAAG 59.361 42.308 0.00 0.00 0.00 3.02
2166 2848 6.461092 CCGCATCCTACATTAACTCTACTCAA 60.461 42.308 0.00 0.00 0.00 3.02
2168 2850 5.009811 ACCGCATCCTACATTAACTCTACTC 59.990 44.000 0.00 0.00 0.00 2.59
2169 2851 4.894114 ACCGCATCCTACATTAACTCTACT 59.106 41.667 0.00 0.00 0.00 2.57
2170 2852 5.197682 ACCGCATCCTACATTAACTCTAC 57.802 43.478 0.00 0.00 0.00 2.59
2171 2853 5.361571 TCAACCGCATCCTACATTAACTCTA 59.638 40.000 0.00 0.00 0.00 2.43
2172 2854 4.161565 TCAACCGCATCCTACATTAACTCT 59.838 41.667 0.00 0.00 0.00 3.24
2173 2855 4.439057 TCAACCGCATCCTACATTAACTC 58.561 43.478 0.00 0.00 0.00 3.01
2182 2864 2.154567 ACCTACTCAACCGCATCCTA 57.845 50.000 0.00 0.00 0.00 2.94
2218 2900 2.420129 CCCCAGAACCAGTGTGCTATAC 60.420 54.545 0.00 0.00 0.00 1.47
2219 2901 1.837439 CCCCAGAACCAGTGTGCTATA 59.163 52.381 0.00 0.00 0.00 1.31
2250 2937 0.604578 TGGGGTACGGAAGAAAGACG 59.395 55.000 0.00 0.00 0.00 4.18
2265 2952 1.596496 AGGTCAGATTAGGGTTGGGG 58.404 55.000 0.00 0.00 0.00 4.96
2270 2957 2.269940 ACTGCAAGGTCAGATTAGGGT 58.730 47.619 0.00 0.00 39.30 4.34
2273 2960 5.220739 GCACAATACTGCAAGGTCAGATTAG 60.221 44.000 0.00 0.00 39.30 1.73
2274 2961 4.635765 GCACAATACTGCAAGGTCAGATTA 59.364 41.667 0.00 0.00 39.30 1.75
2278 3377 1.470098 GGCACAATACTGCAAGGTCAG 59.530 52.381 0.00 0.00 39.08 3.51
2280 3379 1.533625 TGGCACAATACTGCAAGGTC 58.466 50.000 0.00 0.00 39.08 3.85
2299 3398 1.896220 AACAGACGCACAACATCCAT 58.104 45.000 0.00 0.00 0.00 3.41
2310 3409 2.608090 GGCCAAATAGAGTAACAGACGC 59.392 50.000 0.00 0.00 0.00 5.19
2311 3410 3.857052 TGGCCAAATAGAGTAACAGACG 58.143 45.455 0.61 0.00 0.00 4.18
2355 3495 7.566858 AGCAACGCTAAAAAGATAAATGTTG 57.433 32.000 0.00 0.00 36.99 3.33
2364 3504 8.805918 AAGGAACTGTTAGCAACGCTAAAAAGA 61.806 37.037 19.05 3.65 45.88 2.52
2365 3505 6.732147 AAGGAACTGTTAGCAACGCTAAAAAG 60.732 38.462 9.86 12.30 45.88 2.27
2366 3506 5.066764 AAGGAACTGTTAGCAACGCTAAAAA 59.933 36.000 9.86 1.93 45.88 1.94
2367 3507 4.577283 AAGGAACTGTTAGCAACGCTAAAA 59.423 37.500 9.86 4.36 45.88 1.52
2368 3508 4.131596 AAGGAACTGTTAGCAACGCTAAA 58.868 39.130 9.86 1.43 45.88 1.85
2369 3509 3.396260 AGGAACTGTTAGCAACGCTAA 57.604 42.857 4.36 4.36 42.96 3.09
2370 3510 3.396260 AAGGAACTGTTAGCAACGCTA 57.604 42.857 0.00 0.00 40.86 4.26
2371 3511 2.256117 AAGGAACTGTTAGCAACGCT 57.744 45.000 0.00 0.00 40.86 5.07
2372 3512 2.159037 GGTAAGGAACTGTTAGCAACGC 59.841 50.000 0.00 0.00 40.86 4.84
2373 3513 3.660865 AGGTAAGGAACTGTTAGCAACG 58.339 45.455 0.00 0.00 40.86 4.10
2374 3514 5.306394 AGAAGGTAAGGAACTGTTAGCAAC 58.694 41.667 0.00 0.00 40.86 4.17
2375 3515 5.562298 AGAAGGTAAGGAACTGTTAGCAA 57.438 39.130 0.00 0.00 40.86 3.91
2376 3516 5.562298 AAGAAGGTAAGGAACTGTTAGCA 57.438 39.130 0.00 0.00 40.86 3.49
2377 3517 5.581479 GCTAAGAAGGTAAGGAACTGTTAGC 59.419 44.000 0.00 0.00 40.86 3.09
2378 3518 6.698380 TGCTAAGAAGGTAAGGAACTGTTAG 58.302 40.000 0.00 0.00 40.86 2.34
2379 3519 6.675413 TGCTAAGAAGGTAAGGAACTGTTA 57.325 37.500 0.00 0.00 40.86 2.41
2380 3520 5.562298 TGCTAAGAAGGTAAGGAACTGTT 57.438 39.130 0.00 0.00 40.86 3.16
2381 3521 5.763876 ATGCTAAGAAGGTAAGGAACTGT 57.236 39.130 0.00 0.00 40.86 3.55
2382 3522 5.163713 GCAATGCTAAGAAGGTAAGGAACTG 60.164 44.000 0.00 0.00 40.86 3.16
2383 3523 5.280727 AGCAATGCTAAGAAGGTAAGGAACT 60.281 40.000 5.69 0.00 37.46 3.01
2384 3524 4.944317 AGCAATGCTAAGAAGGTAAGGAAC 59.056 41.667 5.69 0.00 36.99 3.62
2385 3525 5.179452 AGCAATGCTAAGAAGGTAAGGAA 57.821 39.130 5.69 0.00 36.99 3.36
2386 3526 4.844349 AGCAATGCTAAGAAGGTAAGGA 57.156 40.909 5.69 0.00 36.99 3.36
2400 3540 2.352960 GGTAGAGCACTGTTAGCAATGC 59.647 50.000 4.73 4.73 46.93 3.56
2401 3541 3.866651 AGGTAGAGCACTGTTAGCAATG 58.133 45.455 0.00 0.00 0.00 2.82
2402 3542 4.223923 AGAAGGTAGAGCACTGTTAGCAAT 59.776 41.667 0.00 0.00 0.00 3.56
2403 3543 3.578716 AGAAGGTAGAGCACTGTTAGCAA 59.421 43.478 0.00 0.00 0.00 3.91
2404 3544 3.165875 AGAAGGTAGAGCACTGTTAGCA 58.834 45.455 0.00 0.00 0.00 3.49
2405 3545 3.878160 AGAAGGTAGAGCACTGTTAGC 57.122 47.619 0.00 0.00 0.00 3.09
2406 3546 5.105716 TGCTAAGAAGGTAGAGCACTGTTAG 60.106 44.000 0.00 0.00 39.93 2.34
2407 3547 4.770531 TGCTAAGAAGGTAGAGCACTGTTA 59.229 41.667 0.00 0.00 39.93 2.41
2408 3548 3.578716 TGCTAAGAAGGTAGAGCACTGTT 59.421 43.478 0.00 0.00 39.93 3.16
2409 3549 3.165875 TGCTAAGAAGGTAGAGCACTGT 58.834 45.455 0.00 0.00 39.93 3.55
2410 3550 3.876274 TGCTAAGAAGGTAGAGCACTG 57.124 47.619 0.00 0.00 39.93 3.66
2411 3551 4.764172 CAATGCTAAGAAGGTAGAGCACT 58.236 43.478 0.00 0.00 46.98 4.40
2412 3552 3.311048 GCAATGCTAAGAAGGTAGAGCAC 59.689 47.826 0.00 0.00 46.98 4.40
2413 3553 5.104941 TTAGCAATGCTAAGAAGGTAGAGCA 60.105 40.000 22.32 0.00 44.75 4.26
2414 3554 3.802866 AGCAATGCTAAGAAGGTAGAGC 58.197 45.455 5.69 0.00 36.99 4.09
2428 3568 2.159462 GGAAGAGCACTGTTAGCAATGC 60.159 50.000 4.73 4.73 46.93 3.56
2429 3569 3.341823 AGGAAGAGCACTGTTAGCAATG 58.658 45.455 0.00 0.00 0.00 2.82
2430 3570 3.710209 AGGAAGAGCACTGTTAGCAAT 57.290 42.857 0.00 0.00 0.00 3.56
2431 3571 3.071602 AGAAGGAAGAGCACTGTTAGCAA 59.928 43.478 0.00 0.00 0.00 3.91
2432 3572 2.634940 AGAAGGAAGAGCACTGTTAGCA 59.365 45.455 0.00 0.00 0.00 3.49
2433 3573 3.326836 AGAAGGAAGAGCACTGTTAGC 57.673 47.619 0.00 0.00 0.00 3.09
2434 3574 4.867608 GCTAAGAAGGAAGAGCACTGTTAG 59.132 45.833 0.00 0.00 34.96 2.34
2435 3575 4.283467 TGCTAAGAAGGAAGAGCACTGTTA 59.717 41.667 0.00 0.00 39.93 2.41
2436 3576 3.071602 TGCTAAGAAGGAAGAGCACTGTT 59.928 43.478 0.00 0.00 39.93 3.16
2437 3577 2.634940 TGCTAAGAAGGAAGAGCACTGT 59.365 45.455 0.00 0.00 39.93 3.55
2438 3578 3.325293 TGCTAAGAAGGAAGAGCACTG 57.675 47.619 0.00 0.00 39.93 3.66
2439 3579 4.260170 CAATGCTAAGAAGGAAGAGCACT 58.740 43.478 0.00 0.00 46.98 4.40
2440 3580 3.181502 GCAATGCTAAGAAGGAAGAGCAC 60.182 47.826 0.00 0.00 46.98 4.40
2441 3581 5.571454 TTAGCAATGCTAAGAAGGAAGAGCA 60.571 40.000 22.32 0.00 44.75 4.26
2442 3582 3.277715 AGCAATGCTAAGAAGGAAGAGC 58.722 45.455 5.69 0.00 36.99 4.09
2456 3596 2.159462 GGAAGAGCACTGTTAGCAATGC 60.159 50.000 4.73 4.73 46.93 3.56
2457 3597 3.341823 AGGAAGAGCACTGTTAGCAATG 58.658 45.455 0.00 0.00 0.00 2.82
2458 3598 3.710209 AGGAAGAGCACTGTTAGCAAT 57.290 42.857 0.00 0.00 0.00 3.56
2459 3599 3.071602 AGAAGGAAGAGCACTGTTAGCAA 59.928 43.478 0.00 0.00 0.00 3.91
2460 3600 2.634940 AGAAGGAAGAGCACTGTTAGCA 59.365 45.455 0.00 0.00 0.00 3.49
2461 3601 3.326836 AGAAGGAAGAGCACTGTTAGC 57.673 47.619 0.00 0.00 0.00 3.09
2462 3602 4.867608 GCTAAGAAGGAAGAGCACTGTTAG 59.132 45.833 0.00 0.00 34.96 2.34
2463 3603 4.283467 TGCTAAGAAGGAAGAGCACTGTTA 59.717 41.667 0.00 0.00 39.93 2.41
2464 3604 3.071602 TGCTAAGAAGGAAGAGCACTGTT 59.928 43.478 0.00 0.00 39.93 3.16
2465 3605 2.634940 TGCTAAGAAGGAAGAGCACTGT 59.365 45.455 0.00 0.00 39.93 3.55
2466 3606 3.325293 TGCTAAGAAGGAAGAGCACTG 57.675 47.619 0.00 0.00 39.93 3.66
2467 3607 4.260170 CAATGCTAAGAAGGAAGAGCACT 58.740 43.478 0.00 0.00 46.98 4.40
2468 3608 3.181502 GCAATGCTAAGAAGGAAGAGCAC 60.182 47.826 0.00 0.00 46.98 4.40
2469 3609 5.571454 TTAGCAATGCTAAGAAGGAAGAGCA 60.571 40.000 22.32 0.00 44.75 4.26
2470 3610 3.277715 AGCAATGCTAAGAAGGAAGAGC 58.722 45.455 5.69 0.00 36.99 4.09
2484 3624 2.159462 GGAAGAGCACTGTTAGCAATGC 60.159 50.000 4.73 4.73 46.93 3.56
2485 3625 3.341823 AGGAAGAGCACTGTTAGCAATG 58.658 45.455 0.00 0.00 0.00 2.82
2486 3626 3.710209 AGGAAGAGCACTGTTAGCAAT 57.290 42.857 0.00 0.00 0.00 3.56
2487 3627 3.071602 AGAAGGAAGAGCACTGTTAGCAA 59.928 43.478 0.00 0.00 0.00 3.91
2488 3628 2.634940 AGAAGGAAGAGCACTGTTAGCA 59.365 45.455 0.00 0.00 0.00 3.49
2489 3629 3.326836 AGAAGGAAGAGCACTGTTAGC 57.673 47.619 0.00 0.00 0.00 3.09
2490 3630 4.867608 GCTAAGAAGGAAGAGCACTGTTAG 59.132 45.833 0.00 0.00 34.96 2.34
2491 3631 4.283467 TGCTAAGAAGGAAGAGCACTGTTA 59.717 41.667 0.00 0.00 39.93 2.41
2492 3632 3.071602 TGCTAAGAAGGAAGAGCACTGTT 59.928 43.478 0.00 0.00 39.93 3.16
2493 3633 2.634940 TGCTAAGAAGGAAGAGCACTGT 59.365 45.455 0.00 0.00 39.93 3.55
2494 3634 3.325293 TGCTAAGAAGGAAGAGCACTG 57.675 47.619 0.00 0.00 39.93 3.66
2495 3635 4.260170 CAATGCTAAGAAGGAAGAGCACT 58.740 43.478 0.00 0.00 46.98 4.40
2496 3636 3.181502 GCAATGCTAAGAAGGAAGAGCAC 60.182 47.826 0.00 0.00 46.98 4.40
2497 3637 5.571454 TTAGCAATGCTAAGAAGGAAGAGCA 60.571 40.000 22.32 0.00 44.75 4.26
2498 3638 3.277715 AGCAATGCTAAGAAGGAAGAGC 58.722 45.455 5.69 0.00 36.99 4.09
2512 3652 3.191371 AGGTAAAGCACTGTTAGCAATGC 59.809 43.478 4.73 4.73 46.93 3.56
2513 3653 5.182001 AGAAGGTAAAGCACTGTTAGCAATG 59.818 40.000 0.00 0.00 32.57 2.82
2514 3654 5.316987 AGAAGGTAAAGCACTGTTAGCAAT 58.683 37.500 0.00 0.00 32.57 3.56
2515 3655 4.714632 AGAAGGTAAAGCACTGTTAGCAA 58.285 39.130 0.00 0.00 32.57 3.91
2516 3656 4.351874 AGAAGGTAAAGCACTGTTAGCA 57.648 40.909 0.00 0.00 32.57 3.49
2517 3657 5.163844 GCTAAGAAGGTAAAGCACTGTTAGC 60.164 44.000 0.00 0.00 35.10 3.09
2518 3658 5.932303 TGCTAAGAAGGTAAAGCACTGTTAG 59.068 40.000 0.00 0.00 39.92 2.34
2519 3659 5.860611 TGCTAAGAAGGTAAAGCACTGTTA 58.139 37.500 0.00 0.00 39.92 2.41
2520 3660 4.714632 TGCTAAGAAGGTAAAGCACTGTT 58.285 39.130 0.00 0.00 39.92 3.16
2521 3661 4.351874 TGCTAAGAAGGTAAAGCACTGT 57.648 40.909 0.00 0.00 39.92 3.55
2522 3662 5.634896 CAATGCTAAGAAGGTAAAGCACTG 58.365 41.667 0.00 0.00 46.84 3.66
2523 3663 4.156739 GCAATGCTAAGAAGGTAAAGCACT 59.843 41.667 0.00 0.00 46.84 4.40
2524 3664 4.156739 AGCAATGCTAAGAAGGTAAAGCAC 59.843 41.667 5.69 0.00 46.84 4.40
2525 3665 5.943416 TTAGCAATGCTAAGAAGGTAAAGCA 59.057 36.000 22.32 0.00 44.75 3.91
2526 3666 4.972514 AGCAATGCTAAGAAGGTAAAGC 57.027 40.909 5.69 0.00 36.99 3.51
2540 3680 3.191371 AGGTAAAGCACTGTTAGCAATGC 59.809 43.478 4.73 4.73 46.93 3.56
2541 3681 5.182001 AGAAGGTAAAGCACTGTTAGCAATG 59.818 40.000 0.00 0.00 32.57 2.82
2542 3682 5.316987 AGAAGGTAAAGCACTGTTAGCAAT 58.683 37.500 0.00 0.00 32.57 3.56
2543 3683 4.714632 AGAAGGTAAAGCACTGTTAGCAA 58.285 39.130 0.00 0.00 32.57 3.91
2544 3684 4.351874 AGAAGGTAAAGCACTGTTAGCA 57.648 40.909 0.00 0.00 32.57 3.49
2545 3685 5.163844 GCTAAGAAGGTAAAGCACTGTTAGC 60.164 44.000 0.00 0.00 35.10 3.09
2546 3686 5.932303 TGCTAAGAAGGTAAAGCACTGTTAG 59.068 40.000 0.00 0.00 39.92 2.34
2547 3687 5.860611 TGCTAAGAAGGTAAAGCACTGTTA 58.139 37.500 0.00 0.00 39.92 2.41
2548 3688 4.714632 TGCTAAGAAGGTAAAGCACTGTT 58.285 39.130 0.00 0.00 39.92 3.16
2549 3689 4.351874 TGCTAAGAAGGTAAAGCACTGT 57.648 40.909 0.00 0.00 39.92 3.55
2550 3690 5.182001 ACAATGCTAAGAAGGTAAAGCACTG 59.818 40.000 3.38 3.38 46.84 3.66
2551 3691 5.316987 ACAATGCTAAGAAGGTAAAGCACT 58.683 37.500 0.00 0.00 46.84 4.40
2552 3692 5.629079 ACAATGCTAAGAAGGTAAAGCAC 57.371 39.130 0.00 0.00 46.84 4.40
2554 3694 7.590279 TGTTAACAATGCTAAGAAGGTAAAGC 58.410 34.615 5.64 0.00 35.51 3.51
2555 3695 8.784043 ACTGTTAACAATGCTAAGAAGGTAAAG 58.216 33.333 10.03 0.00 0.00 1.85
2556 3696 8.564574 CACTGTTAACAATGCTAAGAAGGTAAA 58.435 33.333 10.03 0.00 0.00 2.01
2557 3697 7.308348 GCACTGTTAACAATGCTAAGAAGGTAA 60.308 37.037 29.37 0.00 44.70 2.85
2558 3698 6.148811 GCACTGTTAACAATGCTAAGAAGGTA 59.851 38.462 29.37 0.00 44.70 3.08
2573 3713 5.600908 TCAACGGATTTAGCACTGTTAAC 57.399 39.130 0.00 0.00 34.44 2.01
2574 3714 5.935206 TCATCAACGGATTTAGCACTGTTAA 59.065 36.000 0.00 0.00 34.44 2.01
2578 3718 6.603237 TTATCATCAACGGATTTAGCACTG 57.397 37.500 0.00 0.00 0.00 3.66
2582 3731 7.426929 AGACATTATCATCAACGGATTTAGC 57.573 36.000 0.00 0.00 0.00 3.09
2602 3751 9.515020 GACTTTGAAACAACAATAATGAAGACA 57.485 29.630 0.00 0.00 0.00 3.41
2603 3752 8.968242 GGACTTTGAAACAACAATAATGAAGAC 58.032 33.333 0.00 0.00 0.00 3.01
2617 3766 6.206634 CCAGCTAGTTTATGGACTTTGAAACA 59.793 38.462 0.00 0.00 36.09 2.83
2621 3770 4.288626 ACCCAGCTAGTTTATGGACTTTGA 59.711 41.667 6.91 0.00 36.09 2.69
2623 3772 4.929146 ACCCAGCTAGTTTATGGACTTT 57.071 40.909 6.91 0.00 36.09 2.66
2640 3789 3.806949 AGGTCAGATAAAGCAAACCCA 57.193 42.857 0.00 0.00 0.00 4.51
2641 3790 5.468540 AAAAGGTCAGATAAAGCAAACCC 57.531 39.130 0.00 0.00 0.00 4.11
2680 3829 4.943705 CAGCTTTGCTCCCTACAATTAAGA 59.056 41.667 0.00 0.00 36.40 2.10
2840 3989 1.528339 AGGCATGTCCGATGCATCA 59.472 52.632 25.70 7.89 46.21 3.07
2924 4073 0.253044 TATGAACAGCACCAGCCCTC 59.747 55.000 0.00 0.00 43.56 4.30
3128 4277 2.432628 GCGTCCTCCCTGTGAACG 60.433 66.667 0.00 0.00 0.00 3.95
3241 4394 6.599244 CACTTGTAGGAAATCTGGATGCTTAA 59.401 38.462 0.00 0.00 0.00 1.85
3311 4464 0.869880 GGCAAAACACGACACAAGCC 60.870 55.000 0.00 0.00 0.00 4.35
3357 4511 9.933723 CCATCCTTAAGAAATTCACTTTTTCAT 57.066 29.630 3.36 0.00 35.90 2.57
3413 4568 4.685169 ACGAAATGAAGCAACAGGTATG 57.315 40.909 0.00 0.00 0.00 2.39
3432 4587 4.082679 AGAGAAGCAAGTGGAGTACTAACG 60.083 45.833 0.00 0.00 39.18 3.18
3437 4592 3.187432 GCAAAGAGAAGCAAGTGGAGTAC 59.813 47.826 0.00 0.00 0.00 2.73
3503 4669 5.631096 TCGCGAAATGATATCTGAGCTAAAG 59.369 40.000 6.20 0.00 0.00 1.85
3542 4708 4.556233 GCAAGGACACCAGAATTTTTACC 58.444 43.478 0.00 0.00 0.00 2.85
3573 4749 1.903183 AGAACCCACCTGCTAGTTCTC 59.097 52.381 0.00 0.00 44.19 2.87
3576 4752 0.984995 GGAGAACCCACCTGCTAGTT 59.015 55.000 0.00 0.00 34.14 2.24
3624 4847 6.429692 TGAGTGACAGAAGTTGTTTTCTTTCA 59.570 34.615 1.64 1.64 39.99 2.69
3625 4848 6.842163 TGAGTGACAGAAGTTGTTTTCTTTC 58.158 36.000 0.00 0.00 41.05 2.62
3626 4849 6.817765 TGAGTGACAGAAGTTGTTTTCTTT 57.182 33.333 0.00 0.00 41.05 2.52
3627 4850 6.623767 GCTTGAGTGACAGAAGTTGTTTTCTT 60.624 38.462 0.00 0.00 41.05 2.52
3628 4851 5.163713 GCTTGAGTGACAGAAGTTGTTTTCT 60.164 40.000 0.00 0.00 41.05 2.52
3629 4852 5.030936 GCTTGAGTGACAGAAGTTGTTTTC 58.969 41.667 0.00 0.00 41.05 2.29
3630 4853 4.458989 TGCTTGAGTGACAGAAGTTGTTTT 59.541 37.500 0.00 0.00 41.05 2.43
3631 4854 4.009675 TGCTTGAGTGACAGAAGTTGTTT 58.990 39.130 0.00 0.00 41.05 2.83
3632 4855 3.375299 GTGCTTGAGTGACAGAAGTTGTT 59.625 43.478 0.00 0.00 41.05 2.83
3633 4856 2.939103 GTGCTTGAGTGACAGAAGTTGT 59.061 45.455 0.00 0.00 44.55 3.32
3634 4857 3.002042 CAGTGCTTGAGTGACAGAAGTTG 59.998 47.826 0.00 0.00 0.00 3.16
3635 4858 3.118629 TCAGTGCTTGAGTGACAGAAGTT 60.119 43.478 0.00 0.00 0.00 2.66
3636 4859 2.432146 TCAGTGCTTGAGTGACAGAAGT 59.568 45.455 0.00 0.00 0.00 3.01
3637 4860 3.103447 TCAGTGCTTGAGTGACAGAAG 57.897 47.619 0.00 0.00 0.00 2.85
3638 4861 3.541996 TTCAGTGCTTGAGTGACAGAA 57.458 42.857 0.00 0.00 37.07 3.02
3639 4862 3.541996 TTTCAGTGCTTGAGTGACAGA 57.458 42.857 0.00 0.00 37.07 3.41
3640 4863 3.188048 GGATTTCAGTGCTTGAGTGACAG 59.812 47.826 0.00 0.00 37.07 3.51
3641 4864 3.141398 GGATTTCAGTGCTTGAGTGACA 58.859 45.455 0.00 0.00 37.07 3.58
3642 4865 2.158449 CGGATTTCAGTGCTTGAGTGAC 59.842 50.000 0.00 0.00 37.07 3.67
3643 4866 2.224281 ACGGATTTCAGTGCTTGAGTGA 60.224 45.455 0.00 0.00 37.07 3.41
3644 4867 2.146342 ACGGATTTCAGTGCTTGAGTG 58.854 47.619 0.00 0.00 37.07 3.51
3645 4868 2.037772 AGACGGATTTCAGTGCTTGAGT 59.962 45.455 0.00 0.00 37.07 3.41
3646 4869 2.693069 AGACGGATTTCAGTGCTTGAG 58.307 47.619 0.00 0.00 37.07 3.02
3647 4870 2.807967 CAAGACGGATTTCAGTGCTTGA 59.192 45.455 12.76 0.00 34.61 3.02
3648 4871 2.095567 CCAAGACGGATTTCAGTGCTTG 60.096 50.000 0.00 0.00 36.56 4.01
3649 4872 2.154462 CCAAGACGGATTTCAGTGCTT 58.846 47.619 0.00 0.00 36.56 3.91
3650 4873 1.072331 ACCAAGACGGATTTCAGTGCT 59.928 47.619 0.00 0.00 38.63 4.40
3651 4874 1.464997 GACCAAGACGGATTTCAGTGC 59.535 52.381 0.00 0.00 38.63 4.40
3652 4875 3.045601 AGACCAAGACGGATTTCAGTG 57.954 47.619 0.00 0.00 38.63 3.66
3653 4876 3.071023 TCAAGACCAAGACGGATTTCAGT 59.929 43.478 0.00 0.00 38.63 3.41
3654 4877 3.664107 TCAAGACCAAGACGGATTTCAG 58.336 45.455 0.00 0.00 38.63 3.02
3655 4878 3.762407 TCAAGACCAAGACGGATTTCA 57.238 42.857 0.00 0.00 38.63 2.69
3656 4879 5.292101 CAGTATCAAGACCAAGACGGATTTC 59.708 44.000 0.00 0.00 38.63 2.17
3657 4880 5.046591 TCAGTATCAAGACCAAGACGGATTT 60.047 40.000 0.00 0.00 38.63 2.17
3658 4881 4.466370 TCAGTATCAAGACCAAGACGGATT 59.534 41.667 0.00 0.00 38.63 3.01
3659 4882 4.023980 TCAGTATCAAGACCAAGACGGAT 58.976 43.478 0.00 0.00 38.63 4.18
3660 4883 3.427573 TCAGTATCAAGACCAAGACGGA 58.572 45.455 0.00 0.00 38.63 4.69
3661 4884 3.868757 TCAGTATCAAGACCAAGACGG 57.131 47.619 0.00 0.00 42.50 4.79
3662 4885 5.470368 TCTTTCAGTATCAAGACCAAGACG 58.530 41.667 0.00 0.00 0.00 4.18
3663 4886 7.730364 TTTCTTTCAGTATCAAGACCAAGAC 57.270 36.000 0.00 0.00 0.00 3.01
3664 4887 7.773224 TGTTTTCTTTCAGTATCAAGACCAAGA 59.227 33.333 0.00 0.00 0.00 3.02
3665 4888 7.930217 TGTTTTCTTTCAGTATCAAGACCAAG 58.070 34.615 0.00 0.00 0.00 3.61
3666 4889 7.873719 TGTTTTCTTTCAGTATCAAGACCAA 57.126 32.000 0.00 0.00 0.00 3.67
3667 4890 7.556275 AGTTGTTTTCTTTCAGTATCAAGACCA 59.444 33.333 0.00 0.00 0.00 4.02
3668 4891 7.931275 AGTTGTTTTCTTTCAGTATCAAGACC 58.069 34.615 0.00 0.00 0.00 3.85
3669 4892 9.439537 GAAGTTGTTTTCTTTCAGTATCAAGAC 57.560 33.333 0.00 0.00 0.00 3.01
3670 4893 8.621286 GGAAGTTGTTTTCTTTCAGTATCAAGA 58.379 33.333 0.00 0.00 0.00 3.02
3671 4894 7.587757 CGGAAGTTGTTTTCTTTCAGTATCAAG 59.412 37.037 0.00 0.00 0.00 3.02
3672 4895 7.066525 ACGGAAGTTGTTTTCTTTCAGTATCAA 59.933 33.333 0.00 0.00 46.40 2.57
3673 4896 6.540914 ACGGAAGTTGTTTTCTTTCAGTATCA 59.459 34.615 0.00 0.00 46.40 2.15
3674 4897 6.956047 ACGGAAGTTGTTTTCTTTCAGTATC 58.044 36.000 0.00 0.00 46.40 2.24
3675 4898 6.937436 ACGGAAGTTGTTTTCTTTCAGTAT 57.063 33.333 0.00 0.00 46.40 2.12
3705 4932 5.812642 CAGTATCAAGACGGATTTTAGTGCT 59.187 40.000 0.00 0.00 0.00 4.40
3706 4933 5.810587 TCAGTATCAAGACGGATTTTAGTGC 59.189 40.000 0.00 0.00 0.00 4.40
3707 4934 7.827819 TTCAGTATCAAGACGGATTTTAGTG 57.172 36.000 0.00 0.00 0.00 2.74
3708 4935 8.311836 TCTTTCAGTATCAAGACGGATTTTAGT 58.688 33.333 0.00 0.00 0.00 2.24
3709 4936 8.703604 TCTTTCAGTATCAAGACGGATTTTAG 57.296 34.615 0.00 0.00 0.00 1.85
3710 4937 9.496873 TTTCTTTCAGTATCAAGACGGATTTTA 57.503 29.630 0.00 0.00 0.00 1.52
3711 4938 7.979444 TTCTTTCAGTATCAAGACGGATTTT 57.021 32.000 0.00 0.00 0.00 1.82
3723 4950 6.956047 ACGGAAGTTGTTTTCTTTCAGTATC 58.044 36.000 0.00 0.00 46.40 2.24
3724 4951 6.937436 ACGGAAGTTGTTTTCTTTCAGTAT 57.063 33.333 0.00 0.00 46.40 2.12
3739 4966 6.716620 TTCAGTGCTTGAGTGACGGAAGTT 62.717 45.833 0.00 0.00 40.40 2.66
3740 4967 5.304207 TTCAGTGCTTGAGTGACGGAAGT 62.304 47.826 0.00 0.00 42.26 3.01
3741 4968 1.143305 CAGTGCTTGAGTGACGGAAG 58.857 55.000 0.00 0.00 0.00 3.46
3742 4969 0.750249 TCAGTGCTTGAGTGACGGAA 59.250 50.000 0.00 0.00 0.00 4.30
3743 4970 0.750249 TTCAGTGCTTGAGTGACGGA 59.250 50.000 0.00 0.00 37.07 4.69
3744 4971 1.581934 TTTCAGTGCTTGAGTGACGG 58.418 50.000 0.00 0.00 37.07 4.79
3745 4972 2.158449 GGATTTCAGTGCTTGAGTGACG 59.842 50.000 0.00 0.00 37.07 4.35
3746 4973 2.158449 CGGATTTCAGTGCTTGAGTGAC 59.842 50.000 0.00 0.00 37.07 3.67
3747 4974 2.416747 CGGATTTCAGTGCTTGAGTGA 58.583 47.619 0.00 0.00 37.07 3.41
3748 4975 1.135859 GCGGATTTCAGTGCTTGAGTG 60.136 52.381 0.00 0.00 37.07 3.51
3749 4976 1.160137 GCGGATTTCAGTGCTTGAGT 58.840 50.000 0.00 0.00 37.07 3.41
3750 4977 0.449388 GGCGGATTTCAGTGCTTGAG 59.551 55.000 0.00 0.00 37.07 3.02
3751 4978 0.036732 AGGCGGATTTCAGTGCTTGA 59.963 50.000 0.00 0.00 0.00 3.02
3752 4979 0.883833 AAGGCGGATTTCAGTGCTTG 59.116 50.000 0.00 0.00 0.00 4.01
3753 4980 0.883833 CAAGGCGGATTTCAGTGCTT 59.116 50.000 0.00 0.00 0.00 3.91
3754 4981 0.036732 TCAAGGCGGATTTCAGTGCT 59.963 50.000 0.00 0.00 0.00 4.40
3755 4982 1.098050 ATCAAGGCGGATTTCAGTGC 58.902 50.000 0.00 0.00 0.00 4.40
3756 4983 3.270027 TGTATCAAGGCGGATTTCAGTG 58.730 45.455 0.17 0.00 0.00 3.66
3757 4984 3.627395 TGTATCAAGGCGGATTTCAGT 57.373 42.857 0.17 0.00 0.00 3.41
3758 4985 4.261322 CCAATGTATCAAGGCGGATTTCAG 60.261 45.833 0.17 0.00 0.00 3.02
3759 4986 3.631686 CCAATGTATCAAGGCGGATTTCA 59.368 43.478 0.17 2.36 0.00 2.69
3760 4987 3.632145 ACCAATGTATCAAGGCGGATTTC 59.368 43.478 0.17 0.00 0.00 2.17
3761 4988 3.631250 ACCAATGTATCAAGGCGGATTT 58.369 40.909 0.17 0.00 0.00 2.17
3762 4989 3.297134 ACCAATGTATCAAGGCGGATT 57.703 42.857 0.17 0.00 0.00 3.01
3763 4990 3.297134 AACCAATGTATCAAGGCGGAT 57.703 42.857 0.61 0.61 0.00 4.18
3764 4991 2.752354 CAAACCAATGTATCAAGGCGGA 59.248 45.455 0.00 0.00 0.00 5.54
3765 4992 2.752354 TCAAACCAATGTATCAAGGCGG 59.248 45.455 0.00 0.00 0.00 6.13
3766 4993 3.731867 GCTCAAACCAATGTATCAAGGCG 60.732 47.826 0.00 0.00 0.00 5.52
3767 4994 3.731867 CGCTCAAACCAATGTATCAAGGC 60.732 47.826 0.00 0.00 0.00 4.35
3768 4995 3.181497 CCGCTCAAACCAATGTATCAAGG 60.181 47.826 0.00 0.00 0.00 3.61
3769 4996 3.731867 GCCGCTCAAACCAATGTATCAAG 60.732 47.826 0.00 0.00 0.00 3.02
3770 4997 2.163412 GCCGCTCAAACCAATGTATCAA 59.837 45.455 0.00 0.00 0.00 2.57
3909 5137 9.140286 CAGAGTTGAGAGACGTTTTATCATTTA 57.860 33.333 0.00 0.00 0.00 1.40
3937 5165 3.780294 AGAGTTACAGGCCATACCATTCA 59.220 43.478 5.01 0.00 43.14 2.57
3996 5224 2.432628 GGTGACCAGGTTCGAGCG 60.433 66.667 0.00 0.00 0.00 5.03
4012 5240 5.321927 TGAATGATCATGGAAGATGGATGG 58.678 41.667 9.46 0.00 0.00 3.51
4035 5263 1.011019 GCATCTCGACGACGACGAT 60.011 57.895 21.45 10.49 43.81 3.73
4158 5389 0.618458 GGTATGTCACCTGCCTGGAA 59.382 55.000 0.00 0.00 44.79 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.