Multiple sequence alignment - TraesCS6A01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G346800 chr6A 100.000 3115 0 0 1 3115 579794173 579797287 0.000000e+00 5753.0
1 TraesCS6A01G346800 chr6A 88.161 1419 150 13 900 2308 579124929 579123519 0.000000e+00 1674.0
2 TraesCS6A01G346800 chr6D 94.297 2332 119 10 700 3019 433592575 433594904 0.000000e+00 3557.0
3 TraesCS6A01G346800 chr6D 85.286 1733 202 38 900 2613 432914457 432912759 0.000000e+00 1738.0
4 TraesCS6A01G346800 chr6D 88.153 1435 155 9 900 2326 433259127 433257700 0.000000e+00 1694.0
5 TraesCS6A01G346800 chr6D 84.515 1679 206 37 901 2558 433155343 433153698 0.000000e+00 1611.0
6 TraesCS6A01G346800 chr6D 87.367 1409 156 17 900 2293 433280678 433279277 0.000000e+00 1596.0
7 TraesCS6A01G346800 chr6D 91.915 235 14 3 430 662 433590952 433591183 1.080000e-84 324.0
8 TraesCS6A01G346800 chr6D 89.444 180 15 2 46 225 433584977 433585152 1.120000e-54 224.0
9 TraesCS6A01G346800 chr6B 92.642 1862 113 12 1271 3115 655104569 655106423 0.000000e+00 2658.0
10 TraesCS6A01G346800 chr6B 87.924 1416 157 9 900 2308 653715649 653714241 0.000000e+00 1655.0
11 TraesCS6A01G346800 chr6B 84.341 1737 207 45 900 2608 653856552 653854853 0.000000e+00 1640.0
12 TraesCS6A01G346800 chr6B 92.576 229 13 2 453 680 655103723 655103948 3.000000e-85 326.0
13 TraesCS6A01G346800 chr1A 94.012 167 10 0 248 414 582831878 582831712 1.430000e-63 254.0
14 TraesCS6A01G346800 chr2D 91.713 181 14 1 248 428 606119043 606119222 1.850000e-62 250.0
15 TraesCS6A01G346800 chr3A 93.252 163 11 0 267 429 576280804 576280642 1.120000e-59 241.0
16 TraesCS6A01G346800 chr4A 95.745 47 2 0 383 429 270101520 270101474 3.330000e-10 76.8
17 TraesCS6A01G346800 chr2A 93.878 49 2 1 244 292 205005282 205005235 4.310000e-09 73.1
18 TraesCS6A01G346800 chr3B 100.000 28 0 0 3000 3027 822102998 822102971 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G346800 chr6A 579794173 579797287 3114 False 5753.0 5753 100.000 1 3115 1 chr6A.!!$F1 3114
1 TraesCS6A01G346800 chr6A 579123519 579124929 1410 True 1674.0 1674 88.161 900 2308 1 chr6A.!!$R1 1408
2 TraesCS6A01G346800 chr6D 433590952 433594904 3952 False 1940.5 3557 93.106 430 3019 2 chr6D.!!$F2 2589
3 TraesCS6A01G346800 chr6D 432912759 432914457 1698 True 1738.0 1738 85.286 900 2613 1 chr6D.!!$R1 1713
4 TraesCS6A01G346800 chr6D 433257700 433259127 1427 True 1694.0 1694 88.153 900 2326 1 chr6D.!!$R3 1426
5 TraesCS6A01G346800 chr6D 433153698 433155343 1645 True 1611.0 1611 84.515 901 2558 1 chr6D.!!$R2 1657
6 TraesCS6A01G346800 chr6D 433279277 433280678 1401 True 1596.0 1596 87.367 900 2293 1 chr6D.!!$R4 1393
7 TraesCS6A01G346800 chr6B 653714241 653715649 1408 True 1655.0 1655 87.924 900 2308 1 chr6B.!!$R1 1408
8 TraesCS6A01G346800 chr6B 653854853 653856552 1699 True 1640.0 1640 84.341 900 2608 1 chr6B.!!$R2 1708
9 TraesCS6A01G346800 chr6B 655103723 655106423 2700 False 1492.0 2658 92.609 453 3115 2 chr6B.!!$F1 2662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.032403 CGGTTGACGTGTAACAGGGA 59.968 55.0 12.65 0.0 35.74 4.20 F
305 306 0.035439 AGGTTATGGGCTGACGTTGG 60.035 55.0 0.00 0.0 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 3438 1.271001 CCACACATGCCTCTCTTGTCA 60.271 52.381 0.0 0.0 31.52 3.58 R
2310 3698 5.983333 AGTGTGAAATCTCCCAAGGATAT 57.017 39.130 0.0 0.0 0.00 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.974103 CGTCATATTTGAATCCTCGGTC 57.026 45.455 0.00 0.00 32.48 4.79
22 23 3.425525 CGTCATATTTGAATCCTCGGTCG 59.574 47.826 0.00 0.00 32.48 4.79
23 24 3.184581 GTCATATTTGAATCCTCGGTCGC 59.815 47.826 0.00 0.00 32.48 5.19
24 25 2.971660 TATTTGAATCCTCGGTCGCA 57.028 45.000 0.00 0.00 0.00 5.10
25 26 2.332063 ATTTGAATCCTCGGTCGCAT 57.668 45.000 0.00 0.00 0.00 4.73
26 27 2.107950 TTTGAATCCTCGGTCGCATT 57.892 45.000 0.00 0.00 0.00 3.56
27 28 1.368641 TTGAATCCTCGGTCGCATTG 58.631 50.000 0.00 0.00 0.00 2.82
28 29 0.534873 TGAATCCTCGGTCGCATTGA 59.465 50.000 0.00 0.00 0.00 2.57
29 30 1.066502 TGAATCCTCGGTCGCATTGAA 60.067 47.619 0.00 0.00 0.00 2.69
30 31 1.327764 GAATCCTCGGTCGCATTGAAC 59.672 52.381 0.00 0.00 0.00 3.18
31 32 0.249120 ATCCTCGGTCGCATTGAACA 59.751 50.000 0.00 0.00 32.01 3.18
32 33 0.389817 TCCTCGGTCGCATTGAACAG 60.390 55.000 0.00 0.00 32.01 3.16
33 34 0.670546 CCTCGGTCGCATTGAACAGT 60.671 55.000 0.00 0.00 32.01 3.55
34 35 1.403647 CCTCGGTCGCATTGAACAGTA 60.404 52.381 0.00 0.00 32.01 2.74
35 36 1.654105 CTCGGTCGCATTGAACAGTAC 59.346 52.381 0.00 0.00 32.01 2.73
36 37 0.719465 CGGTCGCATTGAACAGTACC 59.281 55.000 0.00 0.00 32.01 3.34
37 38 0.719465 GGTCGCATTGAACAGTACCG 59.281 55.000 0.00 0.00 33.12 4.02
38 39 1.425412 GTCGCATTGAACAGTACCGT 58.575 50.000 0.00 0.00 0.00 4.83
39 40 2.598589 GTCGCATTGAACAGTACCGTA 58.401 47.619 0.00 0.00 0.00 4.02
40 41 2.597305 GTCGCATTGAACAGTACCGTAG 59.403 50.000 0.00 0.00 0.00 3.51
41 42 2.229543 TCGCATTGAACAGTACCGTAGT 59.770 45.455 0.00 0.00 0.00 2.73
42 43 2.991190 CGCATTGAACAGTACCGTAGTT 59.009 45.455 0.00 0.00 0.00 2.24
43 44 3.181534 CGCATTGAACAGTACCGTAGTTG 60.182 47.826 0.00 0.00 0.00 3.16
44 45 3.424433 GCATTGAACAGTACCGTAGTTGC 60.424 47.826 0.00 0.00 0.00 4.17
45 46 3.738830 TTGAACAGTACCGTAGTTGCT 57.261 42.857 0.00 0.00 0.00 3.91
46 47 3.021269 TGAACAGTACCGTAGTTGCTG 57.979 47.619 0.00 0.00 35.31 4.41
47 48 2.363038 TGAACAGTACCGTAGTTGCTGT 59.637 45.455 0.00 0.00 40.46 4.40
48 49 2.433868 ACAGTACCGTAGTTGCTGTG 57.566 50.000 0.00 0.00 38.63 3.66
49 50 1.684983 ACAGTACCGTAGTTGCTGTGT 59.315 47.619 0.00 0.00 38.63 3.72
50 51 2.288030 ACAGTACCGTAGTTGCTGTGTC 60.288 50.000 0.00 0.00 38.63 3.67
51 52 1.271656 AGTACCGTAGTTGCTGTGTCC 59.728 52.381 0.00 0.00 0.00 4.02
52 53 1.271656 GTACCGTAGTTGCTGTGTCCT 59.728 52.381 0.00 0.00 0.00 3.85
53 54 0.033504 ACCGTAGTTGCTGTGTCCTG 59.966 55.000 0.00 0.00 0.00 3.86
54 55 0.670546 CCGTAGTTGCTGTGTCCTGG 60.671 60.000 0.00 0.00 0.00 4.45
55 56 0.033504 CGTAGTTGCTGTGTCCTGGT 59.966 55.000 0.00 0.00 0.00 4.00
56 57 1.540363 CGTAGTTGCTGTGTCCTGGTT 60.540 52.381 0.00 0.00 0.00 3.67
57 58 2.143925 GTAGTTGCTGTGTCCTGGTTC 58.856 52.381 0.00 0.00 0.00 3.62
58 59 0.532862 AGTTGCTGTGTCCTGGTTCG 60.533 55.000 0.00 0.00 0.00 3.95
59 60 1.891919 TTGCTGTGTCCTGGTTCGC 60.892 57.895 0.00 0.00 0.00 4.70
60 61 2.280797 GCTGTGTCCTGGTTCGCA 60.281 61.111 0.00 0.94 0.00 5.10
61 62 2.320587 GCTGTGTCCTGGTTCGCAG 61.321 63.158 21.22 21.22 42.71 5.18
62 63 2.280797 TGTGTCCTGGTTCGCAGC 60.281 61.111 0.00 0.00 0.00 5.25
63 64 3.050275 GTGTCCTGGTTCGCAGCC 61.050 66.667 0.00 0.00 0.00 4.85
64 65 4.329545 TGTCCTGGTTCGCAGCCC 62.330 66.667 0.00 0.00 0.00 5.19
88 89 4.166888 GAGGCCGAGGCATGCAGA 62.167 66.667 21.36 0.00 44.11 4.26
89 90 4.479993 AGGCCGAGGCATGCAGAC 62.480 66.667 21.36 7.03 44.11 3.51
90 91 4.783621 GGCCGAGGCATGCAGACA 62.784 66.667 21.36 0.00 44.11 3.41
91 92 3.200593 GCCGAGGCATGCAGACAG 61.201 66.667 21.36 4.80 41.49 3.51
92 93 2.267006 CCGAGGCATGCAGACAGT 59.733 61.111 21.36 0.00 0.00 3.55
93 94 1.376424 CCGAGGCATGCAGACAGTT 60.376 57.895 21.36 0.00 0.00 3.16
94 95 1.364626 CCGAGGCATGCAGACAGTTC 61.365 60.000 21.36 0.00 0.00 3.01
95 96 1.364626 CGAGGCATGCAGACAGTTCC 61.365 60.000 21.36 0.00 0.00 3.62
96 97 0.321919 GAGGCATGCAGACAGTTCCA 60.322 55.000 21.36 0.00 0.00 3.53
97 98 0.111061 AGGCATGCAGACAGTTCCAA 59.889 50.000 21.36 0.00 0.00 3.53
98 99 0.524862 GGCATGCAGACAGTTCCAAG 59.475 55.000 21.36 0.00 0.00 3.61
99 100 0.109412 GCATGCAGACAGTTCCAAGC 60.109 55.000 14.21 0.00 0.00 4.01
100 101 1.241165 CATGCAGACAGTTCCAAGCA 58.759 50.000 0.00 0.00 36.34 3.91
101 102 1.068748 CATGCAGACAGTTCCAAGCAC 60.069 52.381 0.00 0.00 34.54 4.40
102 103 0.181114 TGCAGACAGTTCCAAGCACT 59.819 50.000 0.00 0.00 0.00 4.40
103 104 0.590195 GCAGACAGTTCCAAGCACTG 59.410 55.000 0.00 0.00 46.18 3.66
104 105 0.590195 CAGACAGTTCCAAGCACTGC 59.410 55.000 1.28 0.00 44.85 4.40
105 106 0.882042 AGACAGTTCCAAGCACTGCG 60.882 55.000 1.28 0.00 44.85 5.18
106 107 1.153168 ACAGTTCCAAGCACTGCGT 60.153 52.632 1.28 0.00 44.85 5.24
107 108 1.160329 ACAGTTCCAAGCACTGCGTC 61.160 55.000 1.28 0.00 44.85 5.19
108 109 1.598130 AGTTCCAAGCACTGCGTCC 60.598 57.895 0.00 0.00 0.00 4.79
109 110 1.891919 GTTCCAAGCACTGCGTCCA 60.892 57.895 0.00 0.00 0.00 4.02
110 111 1.073025 TTCCAAGCACTGCGTCCAT 59.927 52.632 0.00 0.00 0.00 3.41
111 112 1.236616 TTCCAAGCACTGCGTCCATG 61.237 55.000 0.00 0.00 0.00 3.66
112 113 1.968017 CCAAGCACTGCGTCCATGT 60.968 57.895 0.00 0.00 0.00 3.21
113 114 1.499056 CAAGCACTGCGTCCATGTC 59.501 57.895 0.00 0.00 0.00 3.06
114 115 0.952497 CAAGCACTGCGTCCATGTCT 60.952 55.000 0.00 0.00 0.00 3.41
115 116 0.250467 AAGCACTGCGTCCATGTCTT 60.250 50.000 0.00 0.00 0.00 3.01
116 117 0.952497 AGCACTGCGTCCATGTCTTG 60.952 55.000 0.00 0.00 0.00 3.02
125 126 3.181367 CATGTCTTGGAGCGGCAC 58.819 61.111 1.45 0.00 0.00 5.01
126 127 1.672030 CATGTCTTGGAGCGGCACA 60.672 57.895 1.45 0.00 0.00 4.57
127 128 1.376424 ATGTCTTGGAGCGGCACAG 60.376 57.895 1.45 0.00 0.00 3.66
128 129 2.743928 GTCTTGGAGCGGCACAGG 60.744 66.667 1.45 1.39 0.00 4.00
129 130 4.704833 TCTTGGAGCGGCACAGGC 62.705 66.667 1.45 0.00 40.13 4.85
164 165 4.082523 CCGTGGCGGTCCATGTCT 62.083 66.667 0.00 0.00 45.86 3.41
165 166 2.047274 CGTGGCGGTCCATGTCTT 60.047 61.111 0.00 0.00 45.62 3.01
166 167 2.100631 CGTGGCGGTCCATGTCTTC 61.101 63.158 0.00 0.00 45.62 2.87
167 168 1.003839 GTGGCGGTCCATGTCTTCA 60.004 57.895 0.00 0.00 45.62 3.02
168 169 1.021390 GTGGCGGTCCATGTCTTCAG 61.021 60.000 0.00 0.00 45.62 3.02
169 170 1.450312 GGCGGTCCATGTCTTCAGG 60.450 63.158 0.00 0.00 0.00 3.86
170 171 2.109126 GCGGTCCATGTCTTCAGGC 61.109 63.158 0.00 0.00 0.00 4.85
171 172 1.296392 CGGTCCATGTCTTCAGGCA 59.704 57.895 0.00 0.00 0.00 4.75
172 173 0.107508 CGGTCCATGTCTTCAGGCAT 60.108 55.000 0.00 0.00 0.00 4.40
173 174 1.673168 GGTCCATGTCTTCAGGCATC 58.327 55.000 0.00 0.00 0.00 3.91
174 175 1.293924 GTCCATGTCTTCAGGCATCG 58.706 55.000 0.00 0.00 0.00 3.84
175 176 1.134699 GTCCATGTCTTCAGGCATCGA 60.135 52.381 0.00 0.00 0.00 3.59
176 177 1.137675 TCCATGTCTTCAGGCATCGAG 59.862 52.381 0.00 0.00 0.00 4.04
177 178 1.137675 CCATGTCTTCAGGCATCGAGA 59.862 52.381 0.00 0.00 0.00 4.04
178 179 2.471818 CATGTCTTCAGGCATCGAGAG 58.528 52.381 0.00 0.00 0.00 3.20
179 180 0.820226 TGTCTTCAGGCATCGAGAGG 59.180 55.000 0.00 0.00 0.00 3.69
180 181 0.529555 GTCTTCAGGCATCGAGAGGC 60.530 60.000 0.61 0.61 37.39 4.70
181 182 1.591059 CTTCAGGCATCGAGAGGCG 60.591 63.158 3.63 4.72 39.30 5.52
182 183 2.967929 CTTCAGGCATCGAGAGGCGG 62.968 65.000 3.63 8.00 39.30 6.13
183 184 3.842923 CAGGCATCGAGAGGCGGT 61.843 66.667 3.63 0.00 39.30 5.68
184 185 3.077556 AGGCATCGAGAGGCGGTT 61.078 61.111 3.63 0.00 39.30 4.44
185 186 2.892425 GGCATCGAGAGGCGGTTG 60.892 66.667 3.63 0.00 39.30 3.77
186 187 2.184322 GCATCGAGAGGCGGTTGA 59.816 61.111 0.00 0.00 41.33 3.18
187 188 2.167861 GCATCGAGAGGCGGTTGAC 61.168 63.158 0.00 0.00 41.33 3.18
189 190 2.341101 ATCGAGAGGCGGTTGACGT 61.341 57.895 0.00 0.00 46.52 4.34
190 191 2.543687 ATCGAGAGGCGGTTGACGTG 62.544 60.000 0.00 0.00 46.52 4.49
191 192 2.338984 GAGAGGCGGTTGACGTGT 59.661 61.111 0.00 0.00 46.52 4.49
192 193 1.582968 GAGAGGCGGTTGACGTGTA 59.417 57.895 0.00 0.00 46.52 2.90
193 194 0.038892 GAGAGGCGGTTGACGTGTAA 60.039 55.000 0.00 0.00 46.52 2.41
194 195 0.319297 AGAGGCGGTTGACGTGTAAC 60.319 55.000 0.00 0.00 46.52 2.50
195 196 0.598158 GAGGCGGTTGACGTGTAACA 60.598 55.000 12.65 0.00 46.52 2.41
196 197 0.599204 AGGCGGTTGACGTGTAACAG 60.599 55.000 12.65 10.14 46.52 3.16
197 198 1.562575 GGCGGTTGACGTGTAACAGG 61.563 60.000 12.65 6.47 46.52 4.00
198 199 1.562575 GCGGTTGACGTGTAACAGGG 61.563 60.000 12.65 4.57 46.52 4.45
199 200 0.032403 CGGTTGACGTGTAACAGGGA 59.968 55.000 12.65 0.00 35.74 4.20
200 201 1.505425 GGTTGACGTGTAACAGGGAC 58.495 55.000 12.65 0.00 35.74 4.46
201 202 1.134226 GTTGACGTGTAACAGGGACG 58.866 55.000 0.00 0.00 35.74 4.79
202 203 1.031235 TTGACGTGTAACAGGGACGA 58.969 50.000 0.00 0.00 35.74 4.20
203 204 0.311790 TGACGTGTAACAGGGACGAC 59.688 55.000 0.00 0.00 35.74 4.34
204 205 0.387750 GACGTGTAACAGGGACGACC 60.388 60.000 0.00 0.00 35.74 4.79
205 206 1.443194 CGTGTAACAGGGACGACCG 60.443 63.158 0.00 0.00 46.96 4.79
206 207 1.662044 GTGTAACAGGGACGACCGT 59.338 57.895 0.00 0.00 46.96 4.83
214 215 4.634133 GGACGACCGTGCGTGTCA 62.634 66.667 4.48 0.00 45.72 3.58
215 216 3.097728 GACGACCGTGCGTGTCAG 61.098 66.667 4.48 7.92 45.72 3.51
221 222 4.046998 CGTGCGTGTCAGCGTCAC 62.047 66.667 0.00 0.00 40.67 3.67
222 223 3.702555 GTGCGTGTCAGCGTCACC 61.703 66.667 4.08 0.00 40.67 4.02
225 226 2.253154 CGTGTCAGCGTCACCGTA 59.747 61.111 4.08 0.00 36.15 4.02
226 227 1.370778 CGTGTCAGCGTCACCGTAA 60.371 57.895 4.08 0.00 36.15 3.18
227 228 1.602877 CGTGTCAGCGTCACCGTAAC 61.603 60.000 4.08 0.00 36.15 2.50
228 229 1.370778 TGTCAGCGTCACCGTAACG 60.371 57.895 0.00 0.00 42.87 3.18
234 235 1.915093 CGTCACCGTAACGCATAGC 59.085 57.895 0.00 0.00 32.84 2.97
235 236 1.477030 CGTCACCGTAACGCATAGCC 61.477 60.000 0.00 0.00 32.84 3.93
236 237 0.458889 GTCACCGTAACGCATAGCCA 60.459 55.000 0.00 0.00 0.00 4.75
237 238 0.458889 TCACCGTAACGCATAGCCAC 60.459 55.000 0.00 0.00 0.00 5.01
238 239 0.738063 CACCGTAACGCATAGCCACA 60.738 55.000 0.00 0.00 0.00 4.17
239 240 0.738412 ACCGTAACGCATAGCCACAC 60.738 55.000 0.00 0.00 0.00 3.82
240 241 1.628983 CGTAACGCATAGCCACACG 59.371 57.895 0.00 0.00 0.00 4.49
241 242 1.748647 CGTAACGCATAGCCACACGG 61.749 60.000 0.00 0.00 0.00 4.94
242 243 0.738412 GTAACGCATAGCCACACGGT 60.738 55.000 0.00 0.00 33.28 4.83
243 244 0.738063 TAACGCATAGCCACACGGTG 60.738 55.000 6.58 6.58 33.28 4.94
244 245 3.864686 CGCATAGCCACACGGTGC 61.865 66.667 8.30 0.00 31.34 5.01
245 246 3.864686 GCATAGCCACACGGTGCG 61.865 66.667 8.30 0.00 31.34 5.34
246 247 2.434185 CATAGCCACACGGTGCGT 60.434 61.111 8.30 0.00 42.36 5.24
264 265 2.993545 CGTGAGCTCTGCTACATCTAC 58.006 52.381 16.19 0.00 39.88 2.59
265 266 2.601029 CGTGAGCTCTGCTACATCTACG 60.601 54.545 16.19 8.34 39.88 3.51
266 267 1.950216 TGAGCTCTGCTACATCTACGG 59.050 52.381 16.19 0.00 39.88 4.02
267 268 1.268352 GAGCTCTGCTACATCTACGGG 59.732 57.143 6.43 0.00 39.88 5.28
268 269 1.133761 AGCTCTGCTACATCTACGGGA 60.134 52.381 0.00 0.00 36.99 5.14
269 270 1.268352 GCTCTGCTACATCTACGGGAG 59.732 57.143 0.00 0.00 0.00 4.30
270 271 2.852449 CTCTGCTACATCTACGGGAGA 58.148 52.381 0.00 0.00 39.01 3.71
271 272 3.215151 CTCTGCTACATCTACGGGAGAA 58.785 50.000 0.00 0.00 37.85 2.87
272 273 3.823873 CTCTGCTACATCTACGGGAGAAT 59.176 47.826 0.00 0.00 37.85 2.40
273 274 4.215908 TCTGCTACATCTACGGGAGAATT 58.784 43.478 0.00 0.00 37.85 2.17
274 275 5.382616 TCTGCTACATCTACGGGAGAATTA 58.617 41.667 0.00 0.00 37.85 1.40
275 276 5.241064 TCTGCTACATCTACGGGAGAATTAC 59.759 44.000 0.00 0.00 37.85 1.89
276 277 5.138276 TGCTACATCTACGGGAGAATTACT 58.862 41.667 0.00 0.00 37.85 2.24
277 278 6.301486 TGCTACATCTACGGGAGAATTACTA 58.699 40.000 0.00 0.00 37.85 1.82
278 279 6.206243 TGCTACATCTACGGGAGAATTACTAC 59.794 42.308 0.00 0.00 37.85 2.73
279 280 6.206243 GCTACATCTACGGGAGAATTACTACA 59.794 42.308 0.00 0.00 37.85 2.74
280 281 6.636562 ACATCTACGGGAGAATTACTACAG 57.363 41.667 0.00 0.00 37.85 2.74
281 282 6.363065 ACATCTACGGGAGAATTACTACAGA 58.637 40.000 0.00 0.00 37.85 3.41
282 283 6.832384 ACATCTACGGGAGAATTACTACAGAA 59.168 38.462 0.00 0.00 37.85 3.02
283 284 7.341256 ACATCTACGGGAGAATTACTACAGAAA 59.659 37.037 0.00 0.00 37.85 2.52
284 285 7.330900 TCTACGGGAGAATTACTACAGAAAG 57.669 40.000 0.00 0.00 0.00 2.62
285 286 5.340439 ACGGGAGAATTACTACAGAAAGG 57.660 43.478 0.00 0.00 0.00 3.11
286 287 5.021458 ACGGGAGAATTACTACAGAAAGGA 58.979 41.667 0.00 0.00 0.00 3.36
287 288 5.127356 ACGGGAGAATTACTACAGAAAGGAG 59.873 44.000 0.00 0.00 0.00 3.69
288 289 5.452077 CGGGAGAATTACTACAGAAAGGAGG 60.452 48.000 0.00 0.00 0.00 4.30
289 290 5.425862 GGGAGAATTACTACAGAAAGGAGGT 59.574 44.000 0.00 0.00 0.00 3.85
290 291 6.070136 GGGAGAATTACTACAGAAAGGAGGTT 60.070 42.308 0.00 0.00 0.00 3.50
291 292 7.125356 GGGAGAATTACTACAGAAAGGAGGTTA 59.875 40.741 0.00 0.00 0.00 2.85
292 293 8.706521 GGAGAATTACTACAGAAAGGAGGTTAT 58.293 37.037 0.00 0.00 0.00 1.89
293 294 9.535878 GAGAATTACTACAGAAAGGAGGTTATG 57.464 37.037 0.00 0.00 0.00 1.90
294 295 8.487028 AGAATTACTACAGAAAGGAGGTTATGG 58.513 37.037 0.00 0.00 0.00 2.74
295 296 6.555463 TTACTACAGAAAGGAGGTTATGGG 57.445 41.667 0.00 0.00 0.00 4.00
296 297 2.808906 ACAGAAAGGAGGTTATGGGC 57.191 50.000 0.00 0.00 0.00 5.36
297 298 2.279173 ACAGAAAGGAGGTTATGGGCT 58.721 47.619 0.00 0.00 0.00 5.19
298 299 2.025887 ACAGAAAGGAGGTTATGGGCTG 60.026 50.000 0.00 0.00 0.00 4.85
299 300 2.239654 CAGAAAGGAGGTTATGGGCTGA 59.760 50.000 0.00 0.00 0.00 4.26
300 301 2.239907 AGAAAGGAGGTTATGGGCTGAC 59.760 50.000 0.00 0.00 0.00 3.51
301 302 0.541863 AAGGAGGTTATGGGCTGACG 59.458 55.000 0.00 0.00 0.00 4.35
302 303 0.617820 AGGAGGTTATGGGCTGACGT 60.618 55.000 0.00 0.00 0.00 4.34
303 304 0.252197 GGAGGTTATGGGCTGACGTT 59.748 55.000 0.00 0.00 0.00 3.99
304 305 1.369625 GAGGTTATGGGCTGACGTTG 58.630 55.000 0.00 0.00 0.00 4.10
305 306 0.035439 AGGTTATGGGCTGACGTTGG 60.035 55.000 0.00 0.00 0.00 3.77
306 307 1.654023 GGTTATGGGCTGACGTTGGC 61.654 60.000 7.37 7.37 0.00 4.52
311 312 2.676471 GGCTGACGTTGGCCCAAT 60.676 61.111 18.16 0.00 42.30 3.16
312 313 2.275380 GGCTGACGTTGGCCCAATT 61.275 57.895 18.16 0.00 42.30 2.32
313 314 0.963355 GGCTGACGTTGGCCCAATTA 60.963 55.000 18.16 0.00 42.30 1.40
314 315 0.885196 GCTGACGTTGGCCCAATTAA 59.115 50.000 0.00 0.00 0.00 1.40
315 316 1.271102 GCTGACGTTGGCCCAATTAAA 59.729 47.619 0.00 0.00 0.00 1.52
316 317 2.094234 GCTGACGTTGGCCCAATTAAAT 60.094 45.455 0.00 0.00 0.00 1.40
317 318 3.616317 GCTGACGTTGGCCCAATTAAATT 60.616 43.478 0.00 0.00 0.00 1.82
318 319 4.173256 CTGACGTTGGCCCAATTAAATTC 58.827 43.478 0.00 0.00 0.00 2.17
319 320 3.574396 TGACGTTGGCCCAATTAAATTCA 59.426 39.130 0.00 0.00 0.00 2.57
320 321 4.173256 GACGTTGGCCCAATTAAATTCAG 58.827 43.478 0.00 0.00 0.00 3.02
321 322 3.056179 ACGTTGGCCCAATTAAATTCAGG 60.056 43.478 0.00 0.00 0.00 3.86
322 323 3.194542 CGTTGGCCCAATTAAATTCAGGA 59.805 43.478 0.00 0.00 0.00 3.86
323 324 4.322349 CGTTGGCCCAATTAAATTCAGGAA 60.322 41.667 0.00 0.00 0.00 3.36
324 325 5.178061 GTTGGCCCAATTAAATTCAGGAAG 58.822 41.667 0.00 0.00 0.00 3.46
325 326 4.424842 TGGCCCAATTAAATTCAGGAAGT 58.575 39.130 0.00 0.00 0.00 3.01
326 327 4.222588 TGGCCCAATTAAATTCAGGAAGTG 59.777 41.667 0.00 0.00 0.00 3.16
327 328 4.383010 GGCCCAATTAAATTCAGGAAGTGG 60.383 45.833 0.00 0.00 37.91 4.00
329 330 4.758688 CCAATTAAATTCAGGAAGTGGGC 58.241 43.478 0.00 0.00 35.26 5.36
330 331 4.467438 CCAATTAAATTCAGGAAGTGGGCT 59.533 41.667 0.00 0.00 35.26 5.19
331 332 5.394553 CCAATTAAATTCAGGAAGTGGGCTC 60.395 44.000 0.00 0.00 35.26 4.70
332 333 2.978156 AAATTCAGGAAGTGGGCTCA 57.022 45.000 0.00 0.00 0.00 4.26
333 334 2.503895 AATTCAGGAAGTGGGCTCAG 57.496 50.000 0.00 0.00 0.00 3.35
334 335 1.366319 ATTCAGGAAGTGGGCTCAGT 58.634 50.000 0.00 0.00 0.00 3.41
335 336 1.140312 TTCAGGAAGTGGGCTCAGTT 58.860 50.000 6.29 6.29 39.09 3.16
336 337 2.024176 TCAGGAAGTGGGCTCAGTTA 57.976 50.000 6.65 0.00 36.73 2.24
337 338 2.334977 TCAGGAAGTGGGCTCAGTTAA 58.665 47.619 6.65 0.00 36.73 2.01
338 339 2.708861 TCAGGAAGTGGGCTCAGTTAAA 59.291 45.455 6.65 0.00 36.73 1.52
339 340 3.137544 TCAGGAAGTGGGCTCAGTTAAAA 59.862 43.478 6.65 0.00 36.73 1.52
340 341 3.253432 CAGGAAGTGGGCTCAGTTAAAAC 59.747 47.826 6.65 0.00 36.73 2.43
341 342 2.557056 GGAAGTGGGCTCAGTTAAAACC 59.443 50.000 6.65 0.00 36.73 3.27
342 343 3.219281 GAAGTGGGCTCAGTTAAAACCA 58.781 45.455 6.65 0.00 36.73 3.67
343 344 2.583143 AGTGGGCTCAGTTAAAACCAC 58.417 47.619 0.00 0.00 46.54 4.16
344 345 1.265905 GTGGGCTCAGTTAAAACCACG 59.734 52.381 0.00 0.00 38.96 4.94
345 346 1.141254 TGGGCTCAGTTAAAACCACGA 59.859 47.619 0.00 0.00 0.00 4.35
346 347 1.804748 GGGCTCAGTTAAAACCACGAG 59.195 52.381 0.00 0.00 0.00 4.18
347 348 1.804748 GGCTCAGTTAAAACCACGAGG 59.195 52.381 0.00 0.00 42.21 4.63
348 349 2.549349 GGCTCAGTTAAAACCACGAGGA 60.549 50.000 5.68 0.00 38.69 3.71
349 350 2.737252 GCTCAGTTAAAACCACGAGGAG 59.263 50.000 5.68 0.00 38.69 3.69
350 351 3.554337 GCTCAGTTAAAACCACGAGGAGA 60.554 47.826 5.68 0.00 38.69 3.71
351 352 4.628074 CTCAGTTAAAACCACGAGGAGAA 58.372 43.478 5.68 0.00 38.69 2.87
352 353 5.026038 TCAGTTAAAACCACGAGGAGAAA 57.974 39.130 5.68 0.00 38.69 2.52
353 354 5.430007 TCAGTTAAAACCACGAGGAGAAAA 58.570 37.500 5.68 0.00 38.69 2.29
354 355 5.881443 TCAGTTAAAACCACGAGGAGAAAAA 59.119 36.000 5.68 0.00 38.69 1.94
355 356 6.544564 TCAGTTAAAACCACGAGGAGAAAAAT 59.455 34.615 5.68 0.00 38.69 1.82
356 357 6.856426 CAGTTAAAACCACGAGGAGAAAAATC 59.144 38.462 5.68 0.00 38.69 2.17
357 358 6.771267 AGTTAAAACCACGAGGAGAAAAATCT 59.229 34.615 5.68 0.00 38.69 2.40
358 359 7.935210 AGTTAAAACCACGAGGAGAAAAATCTA 59.065 33.333 5.68 0.00 38.69 1.98
359 360 6.555812 AAAACCACGAGGAGAAAAATCTAC 57.444 37.500 5.68 0.00 38.69 2.59
360 361 3.846360 ACCACGAGGAGAAAAATCTACG 58.154 45.455 5.68 0.00 38.69 3.51
361 362 3.187700 CCACGAGGAGAAAAATCTACGG 58.812 50.000 0.00 0.00 36.89 4.02
362 363 3.368116 CCACGAGGAGAAAAATCTACGGT 60.368 47.826 0.00 0.00 36.89 4.83
363 364 3.612860 CACGAGGAGAAAAATCTACGGTG 59.387 47.826 0.00 0.00 0.00 4.94
364 365 3.187700 CGAGGAGAAAAATCTACGGTGG 58.812 50.000 0.00 0.00 0.00 4.61
365 366 3.119245 CGAGGAGAAAAATCTACGGTGGA 60.119 47.826 0.00 0.00 0.00 4.02
366 367 4.434520 GAGGAGAAAAATCTACGGTGGAG 58.565 47.826 0.00 0.00 0.00 3.86
367 368 4.094476 AGGAGAAAAATCTACGGTGGAGA 58.906 43.478 0.00 0.00 0.00 3.71
368 369 4.160626 AGGAGAAAAATCTACGGTGGAGAG 59.839 45.833 0.00 0.00 0.00 3.20
369 370 4.159879 GGAGAAAAATCTACGGTGGAGAGA 59.840 45.833 0.00 0.00 0.00 3.10
370 371 5.337330 GGAGAAAAATCTACGGTGGAGAGAA 60.337 44.000 0.00 0.00 0.00 2.87
371 372 5.725362 AGAAAAATCTACGGTGGAGAGAAG 58.275 41.667 0.00 0.00 0.00 2.85
372 373 4.473477 AAAATCTACGGTGGAGAGAAGG 57.527 45.455 0.00 0.00 0.00 3.46
373 374 3.383698 AATCTACGGTGGAGAGAAGGA 57.616 47.619 0.00 0.00 0.00 3.36
374 375 2.125773 TCTACGGTGGAGAGAAGGAC 57.874 55.000 0.00 0.00 0.00 3.85
375 376 1.353358 TCTACGGTGGAGAGAAGGACA 59.647 52.381 0.00 0.00 0.00 4.02
376 377 2.168496 CTACGGTGGAGAGAAGGACAA 58.832 52.381 0.00 0.00 0.00 3.18
377 378 1.420430 ACGGTGGAGAGAAGGACAAA 58.580 50.000 0.00 0.00 0.00 2.83
378 379 1.978580 ACGGTGGAGAGAAGGACAAAT 59.021 47.619 0.00 0.00 0.00 2.32
379 380 2.028020 ACGGTGGAGAGAAGGACAAATC 60.028 50.000 0.00 0.00 0.00 2.17
380 381 2.678190 CGGTGGAGAGAAGGACAAATCC 60.678 54.545 0.00 0.00 46.69 3.01
393 394 4.906618 GGACAAATCCTTCTGTAGAACCA 58.093 43.478 0.00 0.00 42.45 3.67
394 395 4.938226 GGACAAATCCTTCTGTAGAACCAG 59.062 45.833 0.00 0.00 42.45 4.00
395 396 4.327680 ACAAATCCTTCTGTAGAACCAGC 58.672 43.478 0.00 0.00 32.32 4.85
396 397 3.636153 AATCCTTCTGTAGAACCAGCC 57.364 47.619 0.00 0.00 32.32 4.85
397 398 2.327325 TCCTTCTGTAGAACCAGCCT 57.673 50.000 0.00 0.00 32.32 4.58
398 399 1.902508 TCCTTCTGTAGAACCAGCCTG 59.097 52.381 0.00 0.00 32.32 4.85
399 400 1.625818 CCTTCTGTAGAACCAGCCTGT 59.374 52.381 0.00 0.00 32.32 4.00
400 401 2.832129 CCTTCTGTAGAACCAGCCTGTA 59.168 50.000 0.00 0.00 32.32 2.74
401 402 3.118956 CCTTCTGTAGAACCAGCCTGTAG 60.119 52.174 0.00 0.00 32.32 2.74
402 403 3.170991 TCTGTAGAACCAGCCTGTAGT 57.829 47.619 0.00 0.00 32.32 2.73
403 404 4.311520 TCTGTAGAACCAGCCTGTAGTA 57.688 45.455 0.00 0.00 32.32 1.82
404 405 4.270834 TCTGTAGAACCAGCCTGTAGTAG 58.729 47.826 0.00 0.00 32.32 2.57
405 406 4.017808 CTGTAGAACCAGCCTGTAGTAGT 58.982 47.826 0.00 0.00 0.00 2.73
406 407 4.413760 TGTAGAACCAGCCTGTAGTAGTT 58.586 43.478 0.00 0.00 0.00 2.24
407 408 4.836736 TGTAGAACCAGCCTGTAGTAGTTT 59.163 41.667 0.00 0.00 0.00 2.66
408 409 4.976540 AGAACCAGCCTGTAGTAGTTTT 57.023 40.909 0.00 0.00 0.00 2.43
409 410 4.895961 AGAACCAGCCTGTAGTAGTTTTC 58.104 43.478 0.00 0.00 0.00 2.29
410 411 3.697619 ACCAGCCTGTAGTAGTTTTCC 57.302 47.619 0.00 0.00 0.00 3.13
411 412 2.028385 ACCAGCCTGTAGTAGTTTTCCG 60.028 50.000 0.00 0.00 0.00 4.30
412 413 2.028385 CCAGCCTGTAGTAGTTTTCCGT 60.028 50.000 0.00 0.00 0.00 4.69
413 414 3.194116 CCAGCCTGTAGTAGTTTTCCGTA 59.806 47.826 0.00 0.00 0.00 4.02
414 415 4.322198 CCAGCCTGTAGTAGTTTTCCGTAA 60.322 45.833 0.00 0.00 0.00 3.18
415 416 4.863131 CAGCCTGTAGTAGTTTTCCGTAAG 59.137 45.833 0.00 0.00 0.00 2.34
416 417 4.525874 AGCCTGTAGTAGTTTTCCGTAAGT 59.474 41.667 0.00 0.00 0.00 2.24
417 418 4.624452 GCCTGTAGTAGTTTTCCGTAAGTG 59.376 45.833 0.00 0.00 0.00 3.16
418 419 5.776744 CCTGTAGTAGTTTTCCGTAAGTGT 58.223 41.667 0.00 0.00 0.00 3.55
419 420 6.570378 GCCTGTAGTAGTTTTCCGTAAGTGTA 60.570 42.308 0.00 0.00 0.00 2.90
420 421 7.025963 CCTGTAGTAGTTTTCCGTAAGTGTAG 58.974 42.308 0.00 0.00 0.00 2.74
421 422 6.913170 TGTAGTAGTTTTCCGTAAGTGTAGG 58.087 40.000 0.00 0.00 0.00 3.18
422 423 6.714810 TGTAGTAGTTTTCCGTAAGTGTAGGA 59.285 38.462 0.00 0.00 0.00 2.94
423 424 6.847421 AGTAGTTTTCCGTAAGTGTAGGAT 57.153 37.500 0.00 0.00 33.57 3.24
424 425 7.237209 AGTAGTTTTCCGTAAGTGTAGGATT 57.763 36.000 0.00 0.00 33.57 3.01
425 426 7.674120 AGTAGTTTTCCGTAAGTGTAGGATTT 58.326 34.615 0.00 0.00 33.57 2.17
426 427 8.152898 AGTAGTTTTCCGTAAGTGTAGGATTTT 58.847 33.333 0.00 0.00 33.57 1.82
427 428 7.812690 AGTTTTCCGTAAGTGTAGGATTTTT 57.187 32.000 0.00 0.00 33.57 1.94
428 429 7.645402 AGTTTTCCGTAAGTGTAGGATTTTTG 58.355 34.615 0.00 0.00 33.57 2.44
434 435 6.816640 CCGTAAGTGTAGGATTTTTGATCTGA 59.183 38.462 0.00 0.00 0.00 3.27
444 445 1.198094 TTTGATCTGAGTGCCCCGGA 61.198 55.000 0.73 0.00 0.00 5.14
445 446 1.198094 TTGATCTGAGTGCCCCGGAA 61.198 55.000 0.73 0.00 0.00 4.30
447 448 1.613630 ATCTGAGTGCCCCGGAAGT 60.614 57.895 0.73 0.00 0.00 3.01
449 450 1.218316 CTGAGTGCCCCGGAAGTAC 59.782 63.158 0.73 3.40 0.00 2.73
481 483 5.234972 GGCCATATAAAATTCTTGCACTTGC 59.765 40.000 0.00 0.00 42.50 4.01
616 619 6.147821 GCTGTCTTAATCAACTTCTACAAGCA 59.852 38.462 0.00 0.00 32.09 3.91
619 622 7.715249 TGTCTTAATCAACTTCTACAAGCAGTT 59.285 33.333 0.00 0.00 31.99 3.16
628 631 4.607293 TCTACAAGCAGTTGTCACATCT 57.393 40.909 0.00 0.00 43.88 2.90
629 632 5.722021 TCTACAAGCAGTTGTCACATCTA 57.278 39.130 0.00 0.00 43.88 1.98
630 633 5.714047 TCTACAAGCAGTTGTCACATCTAG 58.286 41.667 0.00 0.00 43.88 2.43
667 670 8.200792 ACATTGCTAGACTACAAGGATTCTTAG 58.799 37.037 12.96 0.00 32.25 2.18
682 1978 8.794335 AGGATTCTTAGAAGTATTTTCCACAC 57.206 34.615 11.23 0.00 0.00 3.82
690 1986 5.885912 AGAAGTATTTTCCACACAGTGTTGT 59.114 36.000 2.45 0.00 38.31 3.32
858 2216 0.843309 ATTATGCCATCCGTCCACCA 59.157 50.000 0.00 0.00 0.00 4.17
1113 2486 1.971167 GATGGTGGCAAGGCACGAA 60.971 57.895 18.66 11.08 0.00 3.85
1703 3081 7.472543 CCTTTAAGTTCATAATCAAGAACGGG 58.527 38.462 0.00 0.00 46.54 5.28
1730 3108 2.163815 CACTACTGAGTCCAACTACCCG 59.836 54.545 0.00 0.00 31.73 5.28
1868 3246 1.671845 CCTGTCTCGGTAGCTGTAGAC 59.328 57.143 0.00 4.61 39.04 2.59
2134 3512 2.213499 GGAAGAACATCCTATGCCACG 58.787 52.381 0.00 0.00 36.50 4.94
2294 3682 6.686484 ATGCCACATATACAGAGGTTGATA 57.314 37.500 0.00 0.00 0.00 2.15
2406 3805 6.348458 GCATGTACAATGCACTCTTTGAGTAA 60.348 38.462 19.12 0.00 41.37 2.24
2438 3837 7.843490 TTTTTACGACAATCTTGGATCTAGG 57.157 36.000 0.00 0.00 0.00 3.02
2476 3876 5.927281 ATGGCAGAGCTGATGTTAAAATT 57.073 34.783 0.85 0.00 0.00 1.82
2531 3934 8.252417 TGGATGTGAATTTGTAAATCTTGATGG 58.748 33.333 0.00 0.00 0.00 3.51
2567 3971 0.423544 ACCTTCTCTCCCCAATCCCT 59.576 55.000 0.00 0.00 0.00 4.20
2572 3976 1.203428 TCTCTCCCCAATCCCTGTTGA 60.203 52.381 0.00 0.00 0.00 3.18
2622 4029 0.405585 CTCCCAACCCCAATGTCAGT 59.594 55.000 0.00 0.00 0.00 3.41
2637 4044 2.094700 TGTCAGTCGCCTTGATCTACAC 60.095 50.000 0.00 0.00 0.00 2.90
2645 4052 3.050619 GCCTTGATCTACACGATTACGG 58.949 50.000 0.00 0.00 44.46 4.02
2683 4090 2.162681 GGGAGTGTTGTGAAATGAGGG 58.837 52.381 0.00 0.00 0.00 4.30
2701 4108 2.251600 GCACAAGAAGCCAGTCCAG 58.748 57.895 0.00 0.00 0.00 3.86
2713 4120 2.766229 GTCCAGGAGGAGGCTCCC 60.766 72.222 29.62 20.00 46.92 4.30
2762 4169 3.370421 CCATAGGCTAATGACACACCACA 60.370 47.826 0.00 0.00 0.00 4.17
2797 4204 4.406003 GGGGTCATCAAAGCTAGTAAGAGA 59.594 45.833 0.00 0.00 0.00 3.10
2814 4221 2.092429 AGAGACTTCACAAACTTGGCCA 60.092 45.455 0.00 0.00 0.00 5.36
2816 4223 3.096092 AGACTTCACAAACTTGGCCAAA 58.904 40.909 20.91 0.00 0.00 3.28
2836 4243 6.258507 GCCAAAACATCAATATTGGGCTTAAG 59.741 38.462 15.36 0.00 42.05 1.85
2845 4252 8.815565 TCAATATTGGGCTTAAGATGTGTTTA 57.184 30.769 15.36 0.00 0.00 2.01
2850 4257 3.945921 GGGCTTAAGATGTGTTTACCTCC 59.054 47.826 6.67 0.00 0.00 4.30
2867 4274 3.649023 ACCTCCACCACTAACATGTGTAA 59.351 43.478 0.00 0.00 36.30 2.41
2872 4279 4.319190 CCACCACTAACATGTGTAAACGTG 60.319 45.833 0.00 3.54 36.30 4.49
2893 4300 5.648178 TGCATGAGTATTTGTCTTGCATT 57.352 34.783 8.98 0.00 45.21 3.56
2910 4317 8.225777 GTCTTGCATTTGATCTTTTGGATTTTC 58.774 33.333 0.00 0.00 34.33 2.29
2930 4337 1.838112 GATTTGCCCTCACATGACCA 58.162 50.000 0.00 0.00 0.00 4.02
2934 4341 0.034186 TGCCCTCACATGACCAATCC 60.034 55.000 0.00 0.00 0.00 3.01
2990 4399 2.670905 GCTTTTGTTGGTGTGGTTTCAC 59.329 45.455 0.00 0.00 43.87 3.18
2997 4406 1.485480 TGGTGTGGTTTCACGGAGTTA 59.515 47.619 0.00 0.00 46.42 2.24
3035 4444 2.814805 ATGGTGAAGATCTTGGGGTG 57.185 50.000 14.00 0.00 0.00 4.61
3042 4451 0.257039 AGATCTTGGGGTGTGATGGC 59.743 55.000 0.00 0.00 0.00 4.40
3071 4480 1.668826 TGGTATATCATCCCTGGCCC 58.331 55.000 0.00 0.00 0.00 5.80
3082 4491 0.988145 CCCTGGCCCTAGTCCATTCA 60.988 60.000 0.00 0.00 32.37 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.425525 CGACCGAGGATTCAAATATGACG 59.574 47.826 0.00 0.00 34.61 4.35
1 2 3.184581 GCGACCGAGGATTCAAATATGAC 59.815 47.826 0.00 0.00 34.61 3.06
2 3 3.181470 TGCGACCGAGGATTCAAATATGA 60.181 43.478 0.00 0.00 0.00 2.15
3 4 3.130633 TGCGACCGAGGATTCAAATATG 58.869 45.455 0.00 0.00 0.00 1.78
4 5 3.469008 TGCGACCGAGGATTCAAATAT 57.531 42.857 0.00 0.00 0.00 1.28
5 6 2.971660 TGCGACCGAGGATTCAAATA 57.028 45.000 0.00 0.00 0.00 1.40
6 7 2.332063 ATGCGACCGAGGATTCAAAT 57.668 45.000 0.00 0.00 0.00 2.32
7 8 1.737236 CAATGCGACCGAGGATTCAAA 59.263 47.619 0.00 0.00 29.57 2.69
8 9 1.066502 TCAATGCGACCGAGGATTCAA 60.067 47.619 0.00 0.00 29.57 2.69
9 10 0.534873 TCAATGCGACCGAGGATTCA 59.465 50.000 0.00 0.00 29.57 2.57
10 11 1.327764 GTTCAATGCGACCGAGGATTC 59.672 52.381 0.00 0.00 29.57 2.52
11 12 1.338674 TGTTCAATGCGACCGAGGATT 60.339 47.619 0.00 0.00 32.28 3.01
12 13 0.249120 TGTTCAATGCGACCGAGGAT 59.751 50.000 0.00 0.00 0.00 3.24
13 14 0.389817 CTGTTCAATGCGACCGAGGA 60.390 55.000 0.00 0.00 0.00 3.71
14 15 0.670546 ACTGTTCAATGCGACCGAGG 60.671 55.000 0.00 0.00 0.00 4.63
15 16 1.654105 GTACTGTTCAATGCGACCGAG 59.346 52.381 0.00 0.00 0.00 4.63
16 17 1.670674 GGTACTGTTCAATGCGACCGA 60.671 52.381 0.00 0.00 0.00 4.69
17 18 0.719465 GGTACTGTTCAATGCGACCG 59.281 55.000 0.00 0.00 0.00 4.79
18 19 0.719465 CGGTACTGTTCAATGCGACC 59.281 55.000 0.00 0.00 0.00 4.79
19 20 1.425412 ACGGTACTGTTCAATGCGAC 58.575 50.000 0.04 0.00 0.00 5.19
20 21 2.229543 ACTACGGTACTGTTCAATGCGA 59.770 45.455 13.66 0.00 0.00 5.10
21 22 2.602878 ACTACGGTACTGTTCAATGCG 58.397 47.619 13.66 0.00 0.00 4.73
22 23 3.424433 GCAACTACGGTACTGTTCAATGC 60.424 47.826 13.66 14.28 0.00 3.56
23 24 3.994392 AGCAACTACGGTACTGTTCAATG 59.006 43.478 13.66 8.65 0.00 2.82
24 25 3.994392 CAGCAACTACGGTACTGTTCAAT 59.006 43.478 13.66 0.00 0.00 2.57
25 26 3.181473 ACAGCAACTACGGTACTGTTCAA 60.181 43.478 13.66 0.00 38.80 2.69
26 27 2.363038 ACAGCAACTACGGTACTGTTCA 59.637 45.455 13.66 0.00 38.80 3.18
27 28 2.729882 CACAGCAACTACGGTACTGTTC 59.270 50.000 13.66 0.00 39.43 3.18
28 29 2.101917 ACACAGCAACTACGGTACTGTT 59.898 45.455 13.66 0.74 39.43 3.16
29 30 1.684983 ACACAGCAACTACGGTACTGT 59.315 47.619 12.92 12.92 40.96 3.55
30 31 2.325761 GACACAGCAACTACGGTACTG 58.674 52.381 0.00 0.00 36.46 2.74
31 32 1.271656 GGACACAGCAACTACGGTACT 59.728 52.381 0.00 0.00 0.00 2.73
32 33 1.271656 AGGACACAGCAACTACGGTAC 59.728 52.381 0.00 0.00 0.00 3.34
33 34 1.271379 CAGGACACAGCAACTACGGTA 59.729 52.381 0.00 0.00 0.00 4.02
34 35 0.033504 CAGGACACAGCAACTACGGT 59.966 55.000 0.00 0.00 0.00 4.83
35 36 0.670546 CCAGGACACAGCAACTACGG 60.671 60.000 0.00 0.00 0.00 4.02
36 37 0.033504 ACCAGGACACAGCAACTACG 59.966 55.000 0.00 0.00 0.00 3.51
37 38 2.143925 GAACCAGGACACAGCAACTAC 58.856 52.381 0.00 0.00 0.00 2.73
38 39 1.270094 CGAACCAGGACACAGCAACTA 60.270 52.381 0.00 0.00 0.00 2.24
39 40 0.532862 CGAACCAGGACACAGCAACT 60.533 55.000 0.00 0.00 0.00 3.16
40 41 1.941812 CGAACCAGGACACAGCAAC 59.058 57.895 0.00 0.00 0.00 4.17
41 42 1.891919 GCGAACCAGGACACAGCAA 60.892 57.895 0.00 0.00 0.00 3.91
42 43 2.280797 GCGAACCAGGACACAGCA 60.281 61.111 0.00 0.00 0.00 4.41
43 44 2.280797 TGCGAACCAGGACACAGC 60.281 61.111 0.00 0.00 0.00 4.40
44 45 2.320587 GCTGCGAACCAGGACACAG 61.321 63.158 0.00 0.00 42.03 3.66
45 46 2.280797 GCTGCGAACCAGGACACA 60.281 61.111 0.00 0.00 42.03 3.72
46 47 3.050275 GGCTGCGAACCAGGACAC 61.050 66.667 0.00 0.00 42.03 3.67
47 48 4.329545 GGGCTGCGAACCAGGACA 62.330 66.667 0.00 0.00 42.03 4.02
71 72 4.166888 TCTGCATGCCTCGGCCTC 62.167 66.667 16.68 0.00 41.09 4.70
72 73 4.479993 GTCTGCATGCCTCGGCCT 62.480 66.667 16.68 0.00 41.09 5.19
73 74 4.783621 TGTCTGCATGCCTCGGCC 62.784 66.667 16.68 0.00 41.09 6.13
74 75 3.200593 CTGTCTGCATGCCTCGGC 61.201 66.667 16.68 5.79 42.35 5.54
75 76 1.364626 GAACTGTCTGCATGCCTCGG 61.365 60.000 16.68 12.53 0.00 4.63
76 77 1.364626 GGAACTGTCTGCATGCCTCG 61.365 60.000 16.68 3.68 0.00 4.63
77 78 0.321919 TGGAACTGTCTGCATGCCTC 60.322 55.000 16.68 6.08 0.00 4.70
78 79 0.111061 TTGGAACTGTCTGCATGCCT 59.889 50.000 16.68 0.00 0.00 4.75
79 80 0.524862 CTTGGAACTGTCTGCATGCC 59.475 55.000 16.68 0.00 0.00 4.40
80 81 0.109412 GCTTGGAACTGTCTGCATGC 60.109 55.000 11.82 11.82 0.00 4.06
81 82 1.068748 GTGCTTGGAACTGTCTGCATG 60.069 52.381 0.00 0.00 32.98 4.06
82 83 1.202855 AGTGCTTGGAACTGTCTGCAT 60.203 47.619 0.00 0.00 32.98 3.96
83 84 0.181114 AGTGCTTGGAACTGTCTGCA 59.819 50.000 0.00 0.00 0.00 4.41
84 85 0.590195 CAGTGCTTGGAACTGTCTGC 59.410 55.000 0.00 0.00 40.17 4.26
85 86 0.590195 GCAGTGCTTGGAACTGTCTG 59.410 55.000 8.18 0.00 45.58 3.51
86 87 0.882042 CGCAGTGCTTGGAACTGTCT 60.882 55.000 14.33 0.00 45.58 3.41
87 88 1.160329 ACGCAGTGCTTGGAACTGTC 61.160 55.000 14.33 0.36 45.58 3.51
88 89 1.153168 ACGCAGTGCTTGGAACTGT 60.153 52.632 14.33 0.00 45.58 3.55
89 90 3.736483 ACGCAGTGCTTGGAACTG 58.264 55.556 14.33 1.53 46.39 3.16
108 109 1.642037 CTGTGCCGCTCCAAGACATG 61.642 60.000 0.00 0.00 0.00 3.21
109 110 1.376424 CTGTGCCGCTCCAAGACAT 60.376 57.895 0.00 0.00 0.00 3.06
110 111 2.031012 CTGTGCCGCTCCAAGACA 59.969 61.111 0.00 0.00 0.00 3.41
111 112 2.743928 CCTGTGCCGCTCCAAGAC 60.744 66.667 0.00 0.00 0.00 3.01
112 113 4.704833 GCCTGTGCCGCTCCAAGA 62.705 66.667 0.00 0.00 0.00 3.02
151 152 1.450312 CCTGAAGACATGGACCGCC 60.450 63.158 0.00 0.00 0.00 6.13
152 153 2.109126 GCCTGAAGACATGGACCGC 61.109 63.158 0.00 0.00 0.00 5.68
153 154 0.107508 ATGCCTGAAGACATGGACCG 60.108 55.000 0.00 0.00 0.00 4.79
154 155 1.673168 GATGCCTGAAGACATGGACC 58.327 55.000 0.00 0.00 0.00 4.46
155 156 1.134699 TCGATGCCTGAAGACATGGAC 60.135 52.381 0.00 0.00 0.00 4.02
156 157 1.137675 CTCGATGCCTGAAGACATGGA 59.862 52.381 0.00 0.00 31.40 3.41
157 158 1.137675 TCTCGATGCCTGAAGACATGG 59.862 52.381 0.00 0.00 0.00 3.66
158 159 2.471818 CTCTCGATGCCTGAAGACATG 58.528 52.381 0.00 0.00 0.00 3.21
159 160 1.411977 CCTCTCGATGCCTGAAGACAT 59.588 52.381 0.00 0.00 0.00 3.06
160 161 0.820226 CCTCTCGATGCCTGAAGACA 59.180 55.000 0.00 0.00 0.00 3.41
161 162 0.529555 GCCTCTCGATGCCTGAAGAC 60.530 60.000 0.00 0.00 0.00 3.01
162 163 1.819229 GCCTCTCGATGCCTGAAGA 59.181 57.895 0.00 0.00 0.00 2.87
163 164 1.591059 CGCCTCTCGATGCCTGAAG 60.591 63.158 0.00 0.00 41.67 3.02
164 165 2.496341 CGCCTCTCGATGCCTGAA 59.504 61.111 0.00 0.00 41.67 3.02
165 166 3.531207 CCGCCTCTCGATGCCTGA 61.531 66.667 0.00 0.00 41.67 3.86
166 167 3.376935 AACCGCCTCTCGATGCCTG 62.377 63.158 0.00 0.00 41.67 4.85
167 168 3.077556 AACCGCCTCTCGATGCCT 61.078 61.111 0.00 0.00 41.67 4.75
168 169 2.892425 CAACCGCCTCTCGATGCC 60.892 66.667 0.00 0.00 41.67 4.40
169 170 2.167861 GTCAACCGCCTCTCGATGC 61.168 63.158 0.00 0.00 41.67 3.91
170 171 1.874019 CGTCAACCGCCTCTCGATG 60.874 63.158 0.00 0.00 41.67 3.84
171 172 2.341101 ACGTCAACCGCCTCTCGAT 61.341 57.895 0.00 0.00 41.67 3.59
172 173 2.981909 ACGTCAACCGCCTCTCGA 60.982 61.111 0.00 0.00 41.67 4.04
173 174 2.191354 TACACGTCAACCGCCTCTCG 62.191 60.000 0.00 0.00 41.42 4.04
174 175 0.038892 TTACACGTCAACCGCCTCTC 60.039 55.000 0.00 0.00 41.42 3.20
175 176 0.319297 GTTACACGTCAACCGCCTCT 60.319 55.000 0.00 0.00 41.42 3.69
176 177 0.598158 TGTTACACGTCAACCGCCTC 60.598 55.000 7.01 0.00 41.42 4.70
177 178 0.599204 CTGTTACACGTCAACCGCCT 60.599 55.000 7.01 0.00 41.42 5.52
178 179 1.562575 CCTGTTACACGTCAACCGCC 61.563 60.000 7.01 0.00 41.42 6.13
179 180 1.562575 CCCTGTTACACGTCAACCGC 61.563 60.000 7.01 0.00 41.42 5.68
180 181 0.032403 TCCCTGTTACACGTCAACCG 59.968 55.000 7.01 1.69 44.03 4.44
181 182 1.505425 GTCCCTGTTACACGTCAACC 58.495 55.000 7.01 0.00 0.00 3.77
182 183 1.134226 CGTCCCTGTTACACGTCAAC 58.866 55.000 3.16 3.16 0.00 3.18
183 184 1.031235 TCGTCCCTGTTACACGTCAA 58.969 50.000 0.00 0.00 35.05 3.18
184 185 0.311790 GTCGTCCCTGTTACACGTCA 59.688 55.000 0.00 0.00 35.05 4.35
185 186 0.387750 GGTCGTCCCTGTTACACGTC 60.388 60.000 0.00 0.00 35.05 4.34
186 187 1.662044 GGTCGTCCCTGTTACACGT 59.338 57.895 0.00 0.00 35.05 4.49
187 188 1.443194 CGGTCGTCCCTGTTACACG 60.443 63.158 0.00 0.00 34.78 4.49
188 189 0.665369 CACGGTCGTCCCTGTTACAC 60.665 60.000 0.00 0.00 0.00 2.90
189 190 1.661480 CACGGTCGTCCCTGTTACA 59.339 57.895 0.00 0.00 0.00 2.41
190 191 1.735559 GCACGGTCGTCCCTGTTAC 60.736 63.158 0.00 0.00 0.00 2.50
191 192 2.652530 GCACGGTCGTCCCTGTTA 59.347 61.111 0.00 0.00 0.00 2.41
192 193 4.657824 CGCACGGTCGTCCCTGTT 62.658 66.667 0.00 0.00 0.00 3.16
197 198 4.634133 TGACACGCACGGTCGTCC 62.634 66.667 1.22 0.00 41.21 4.79
198 199 3.097728 CTGACACGCACGGTCGTC 61.098 66.667 1.22 0.00 41.21 4.20
204 205 4.046998 GTGACGCTGACACGCACG 62.047 66.667 0.00 0.00 36.19 5.34
205 206 3.702555 GGTGACGCTGACACGCAC 61.703 66.667 0.00 12.05 38.90 5.34
217 218 0.458889 TGGCTATGCGTTACGGTGAC 60.459 55.000 6.94 0.00 0.00 3.67
218 219 0.458889 GTGGCTATGCGTTACGGTGA 60.459 55.000 6.94 0.00 0.00 4.02
219 220 0.738063 TGTGGCTATGCGTTACGGTG 60.738 55.000 6.94 0.00 0.00 4.94
220 221 0.738412 GTGTGGCTATGCGTTACGGT 60.738 55.000 6.94 0.00 0.00 4.83
221 222 1.748647 CGTGTGGCTATGCGTTACGG 61.749 60.000 6.94 0.00 0.00 4.02
222 223 1.628983 CGTGTGGCTATGCGTTACG 59.371 57.895 0.00 0.00 0.00 3.18
223 224 0.738412 ACCGTGTGGCTATGCGTTAC 60.738 55.000 0.00 0.00 39.70 2.50
224 225 0.738063 CACCGTGTGGCTATGCGTTA 60.738 55.000 0.00 0.00 39.70 3.18
225 226 2.032634 CACCGTGTGGCTATGCGTT 61.033 57.895 0.00 0.00 39.70 4.84
226 227 2.434185 CACCGTGTGGCTATGCGT 60.434 61.111 0.00 0.00 39.70 5.24
227 228 3.864686 GCACCGTGTGGCTATGCG 61.865 66.667 0.00 0.00 39.70 4.73
228 229 3.864686 CGCACCGTGTGGCTATGC 61.865 66.667 4.02 0.00 39.70 3.14
229 230 2.434185 ACGCACCGTGTGGCTATG 60.434 61.111 16.23 0.00 39.18 2.23
239 240 3.342370 TAGCAGAGCTCACGCACCG 62.342 63.158 24.76 3.67 40.44 4.94
240 241 1.807573 GTAGCAGAGCTCACGCACC 60.808 63.158 24.76 13.61 40.44 5.01
241 242 0.459237 ATGTAGCAGAGCTCACGCAC 60.459 55.000 24.76 20.10 40.44 5.34
242 243 0.179127 GATGTAGCAGAGCTCACGCA 60.179 55.000 24.76 16.25 40.44 5.24
243 244 0.102120 AGATGTAGCAGAGCTCACGC 59.898 55.000 17.77 17.79 40.44 5.34
244 245 2.601029 CGTAGATGTAGCAGAGCTCACG 60.601 54.545 17.77 8.95 40.44 4.35
245 246 2.287308 CCGTAGATGTAGCAGAGCTCAC 60.287 54.545 17.77 7.64 40.44 3.51
246 247 1.950216 CCGTAGATGTAGCAGAGCTCA 59.050 52.381 17.77 0.00 40.44 4.26
247 248 1.268352 CCCGTAGATGTAGCAGAGCTC 59.732 57.143 5.27 5.27 40.44 4.09
248 249 1.133761 TCCCGTAGATGTAGCAGAGCT 60.134 52.381 0.00 0.00 43.41 4.09
249 250 1.268352 CTCCCGTAGATGTAGCAGAGC 59.732 57.143 0.00 0.00 0.00 4.09
250 251 2.852449 TCTCCCGTAGATGTAGCAGAG 58.148 52.381 0.00 0.00 0.00 3.35
251 252 3.292492 TTCTCCCGTAGATGTAGCAGA 57.708 47.619 0.00 0.00 33.05 4.26
252 253 4.592485 AATTCTCCCGTAGATGTAGCAG 57.408 45.455 0.00 0.00 33.05 4.24
253 254 5.138276 AGTAATTCTCCCGTAGATGTAGCA 58.862 41.667 0.00 0.00 33.05 3.49
254 255 5.708877 AGTAATTCTCCCGTAGATGTAGC 57.291 43.478 0.00 0.00 33.05 3.58
255 256 7.660617 TCTGTAGTAATTCTCCCGTAGATGTAG 59.339 40.741 0.00 0.00 33.05 2.74
256 257 7.512130 TCTGTAGTAATTCTCCCGTAGATGTA 58.488 38.462 0.00 0.00 33.05 2.29
257 258 6.363065 TCTGTAGTAATTCTCCCGTAGATGT 58.637 40.000 0.00 0.00 33.05 3.06
258 259 6.879276 TCTGTAGTAATTCTCCCGTAGATG 57.121 41.667 0.00 0.00 33.05 2.90
259 260 7.014422 CCTTTCTGTAGTAATTCTCCCGTAGAT 59.986 40.741 0.00 0.00 33.05 1.98
260 261 6.320672 CCTTTCTGTAGTAATTCTCCCGTAGA 59.679 42.308 0.00 0.00 0.00 2.59
261 262 6.320672 TCCTTTCTGTAGTAATTCTCCCGTAG 59.679 42.308 0.00 0.00 0.00 3.51
262 263 6.189859 TCCTTTCTGTAGTAATTCTCCCGTA 58.810 40.000 0.00 0.00 0.00 4.02
263 264 5.021458 TCCTTTCTGTAGTAATTCTCCCGT 58.979 41.667 0.00 0.00 0.00 5.28
264 265 5.452077 CCTCCTTTCTGTAGTAATTCTCCCG 60.452 48.000 0.00 0.00 0.00 5.14
265 266 5.425862 ACCTCCTTTCTGTAGTAATTCTCCC 59.574 44.000 0.00 0.00 0.00 4.30
266 267 6.547930 ACCTCCTTTCTGTAGTAATTCTCC 57.452 41.667 0.00 0.00 0.00 3.71
267 268 9.535878 CATAACCTCCTTTCTGTAGTAATTCTC 57.464 37.037 0.00 0.00 0.00 2.87
268 269 8.487028 CCATAACCTCCTTTCTGTAGTAATTCT 58.513 37.037 0.00 0.00 0.00 2.40
269 270 7.715686 CCCATAACCTCCTTTCTGTAGTAATTC 59.284 40.741 0.00 0.00 0.00 2.17
270 271 7.574607 CCCATAACCTCCTTTCTGTAGTAATT 58.425 38.462 0.00 0.00 0.00 1.40
271 272 6.409349 GCCCATAACCTCCTTTCTGTAGTAAT 60.409 42.308 0.00 0.00 0.00 1.89
272 273 5.104652 GCCCATAACCTCCTTTCTGTAGTAA 60.105 44.000 0.00 0.00 0.00 2.24
273 274 4.407945 GCCCATAACCTCCTTTCTGTAGTA 59.592 45.833 0.00 0.00 0.00 1.82
274 275 3.200165 GCCCATAACCTCCTTTCTGTAGT 59.800 47.826 0.00 0.00 0.00 2.73
275 276 3.456277 AGCCCATAACCTCCTTTCTGTAG 59.544 47.826 0.00 0.00 0.00 2.74
276 277 3.199946 CAGCCCATAACCTCCTTTCTGTA 59.800 47.826 0.00 0.00 0.00 2.74
277 278 2.025887 CAGCCCATAACCTCCTTTCTGT 60.026 50.000 0.00 0.00 0.00 3.41
278 279 2.239654 TCAGCCCATAACCTCCTTTCTG 59.760 50.000 0.00 0.00 0.00 3.02
279 280 2.239907 GTCAGCCCATAACCTCCTTTCT 59.760 50.000 0.00 0.00 0.00 2.52
280 281 2.644676 GTCAGCCCATAACCTCCTTTC 58.355 52.381 0.00 0.00 0.00 2.62
281 282 1.065418 CGTCAGCCCATAACCTCCTTT 60.065 52.381 0.00 0.00 0.00 3.11
282 283 0.541863 CGTCAGCCCATAACCTCCTT 59.458 55.000 0.00 0.00 0.00 3.36
283 284 0.617820 ACGTCAGCCCATAACCTCCT 60.618 55.000 0.00 0.00 0.00 3.69
284 285 0.252197 AACGTCAGCCCATAACCTCC 59.748 55.000 0.00 0.00 0.00 4.30
285 286 1.369625 CAACGTCAGCCCATAACCTC 58.630 55.000 0.00 0.00 0.00 3.85
286 287 0.035439 CCAACGTCAGCCCATAACCT 60.035 55.000 0.00 0.00 0.00 3.50
287 288 1.654023 GCCAACGTCAGCCCATAACC 61.654 60.000 0.00 0.00 0.00 2.85
288 289 1.654023 GGCCAACGTCAGCCCATAAC 61.654 60.000 16.07 0.00 43.76 1.89
289 290 1.377987 GGCCAACGTCAGCCCATAA 60.378 57.895 16.07 0.00 43.76 1.90
290 291 2.270850 GGCCAACGTCAGCCCATA 59.729 61.111 16.07 0.00 43.76 2.74
295 296 0.885196 TTAATTGGGCCAACGTCAGC 59.115 50.000 23.59 1.27 0.00 4.26
296 297 3.866883 ATTTAATTGGGCCAACGTCAG 57.133 42.857 23.59 0.00 0.00 3.51
297 298 3.574396 TGAATTTAATTGGGCCAACGTCA 59.426 39.130 23.59 14.92 0.00 4.35
298 299 4.173256 CTGAATTTAATTGGGCCAACGTC 58.827 43.478 23.59 12.57 0.00 4.34
299 300 3.056179 CCTGAATTTAATTGGGCCAACGT 60.056 43.478 23.59 15.25 0.00 3.99
300 301 3.194542 TCCTGAATTTAATTGGGCCAACG 59.805 43.478 23.59 3.72 0.00 4.10
301 302 4.817318 TCCTGAATTTAATTGGGCCAAC 57.183 40.909 23.59 7.52 0.00 3.77
302 303 4.843516 ACTTCCTGAATTTAATTGGGCCAA 59.156 37.500 23.33 23.33 0.00 4.52
303 304 4.222588 CACTTCCTGAATTTAATTGGGCCA 59.777 41.667 0.00 0.00 0.00 5.36
304 305 4.383010 CCACTTCCTGAATTTAATTGGGCC 60.383 45.833 0.00 0.00 0.00 5.80
305 306 4.383010 CCCACTTCCTGAATTTAATTGGGC 60.383 45.833 0.00 0.00 36.61 5.36
306 307 4.383010 GCCCACTTCCTGAATTTAATTGGG 60.383 45.833 0.00 0.00 42.85 4.12
307 308 4.467438 AGCCCACTTCCTGAATTTAATTGG 59.533 41.667 0.00 0.00 0.00 3.16
308 309 5.185635 TGAGCCCACTTCCTGAATTTAATTG 59.814 40.000 0.00 0.00 0.00 2.32
309 310 5.332743 TGAGCCCACTTCCTGAATTTAATT 58.667 37.500 0.00 0.00 0.00 1.40
310 311 4.934356 TGAGCCCACTTCCTGAATTTAAT 58.066 39.130 0.00 0.00 0.00 1.40
311 312 4.202567 ACTGAGCCCACTTCCTGAATTTAA 60.203 41.667 0.00 0.00 0.00 1.52
312 313 3.330701 ACTGAGCCCACTTCCTGAATTTA 59.669 43.478 0.00 0.00 0.00 1.40
313 314 2.108952 ACTGAGCCCACTTCCTGAATTT 59.891 45.455 0.00 0.00 0.00 1.82
314 315 1.707427 ACTGAGCCCACTTCCTGAATT 59.293 47.619 0.00 0.00 0.00 2.17
315 316 1.366319 ACTGAGCCCACTTCCTGAAT 58.634 50.000 0.00 0.00 0.00 2.57
316 317 1.140312 AACTGAGCCCACTTCCTGAA 58.860 50.000 0.00 0.00 0.00 3.02
317 318 2.024176 TAACTGAGCCCACTTCCTGA 57.976 50.000 0.00 0.00 0.00 3.86
318 319 2.859165 TTAACTGAGCCCACTTCCTG 57.141 50.000 0.00 0.00 0.00 3.86
319 320 3.487372 GTTTTAACTGAGCCCACTTCCT 58.513 45.455 0.00 0.00 0.00 3.36
320 321 2.557056 GGTTTTAACTGAGCCCACTTCC 59.443 50.000 0.00 0.00 0.00 3.46
321 322 3.004419 GTGGTTTTAACTGAGCCCACTTC 59.996 47.826 0.00 0.00 39.36 3.01
322 323 2.956333 GTGGTTTTAACTGAGCCCACTT 59.044 45.455 0.00 0.00 39.36 3.16
323 324 2.583143 GTGGTTTTAACTGAGCCCACT 58.417 47.619 0.00 0.00 39.36 4.00
324 325 1.265905 CGTGGTTTTAACTGAGCCCAC 59.734 52.381 0.00 0.00 39.13 4.61
325 326 1.141254 TCGTGGTTTTAACTGAGCCCA 59.859 47.619 0.00 0.00 0.00 5.36
326 327 1.804748 CTCGTGGTTTTAACTGAGCCC 59.195 52.381 0.00 0.00 0.00 5.19
327 328 1.804748 CCTCGTGGTTTTAACTGAGCC 59.195 52.381 0.00 0.00 0.00 4.70
328 329 2.737252 CTCCTCGTGGTTTTAACTGAGC 59.263 50.000 2.99 0.00 34.23 4.26
329 330 4.252971 TCTCCTCGTGGTTTTAACTGAG 57.747 45.455 2.99 0.00 34.23 3.35
330 331 4.675976 TTCTCCTCGTGGTTTTAACTGA 57.324 40.909 2.99 0.00 34.23 3.41
331 332 5.744666 TTTTCTCCTCGTGGTTTTAACTG 57.255 39.130 2.99 0.00 34.23 3.16
332 333 6.771267 AGATTTTTCTCCTCGTGGTTTTAACT 59.229 34.615 2.99 0.00 34.23 2.24
333 334 6.967135 AGATTTTTCTCCTCGTGGTTTTAAC 58.033 36.000 2.99 0.00 34.23 2.01
334 335 7.095523 CGTAGATTTTTCTCCTCGTGGTTTTAA 60.096 37.037 2.99 0.00 34.23 1.52
335 336 6.366877 CGTAGATTTTTCTCCTCGTGGTTTTA 59.633 38.462 2.99 0.00 34.23 1.52
336 337 5.178809 CGTAGATTTTTCTCCTCGTGGTTTT 59.821 40.000 2.99 0.00 34.23 2.43
337 338 4.689345 CGTAGATTTTTCTCCTCGTGGTTT 59.311 41.667 2.99 0.00 34.23 3.27
338 339 4.243270 CGTAGATTTTTCTCCTCGTGGTT 58.757 43.478 2.99 0.00 34.23 3.67
339 340 3.368116 CCGTAGATTTTTCTCCTCGTGGT 60.368 47.826 2.99 0.00 34.23 4.16
340 341 3.187700 CCGTAGATTTTTCTCCTCGTGG 58.812 50.000 0.00 0.00 0.00 4.94
341 342 3.612860 CACCGTAGATTTTTCTCCTCGTG 59.387 47.826 0.00 0.00 0.00 4.35
342 343 3.368116 CCACCGTAGATTTTTCTCCTCGT 60.368 47.826 0.00 0.00 0.00 4.18
343 344 3.119245 TCCACCGTAGATTTTTCTCCTCG 60.119 47.826 0.00 0.00 0.00 4.63
344 345 4.159879 TCTCCACCGTAGATTTTTCTCCTC 59.840 45.833 0.00 0.00 0.00 3.71
345 346 4.094476 TCTCCACCGTAGATTTTTCTCCT 58.906 43.478 0.00 0.00 0.00 3.69
346 347 4.159879 TCTCTCCACCGTAGATTTTTCTCC 59.840 45.833 0.00 0.00 0.00 3.71
347 348 5.326200 TCTCTCCACCGTAGATTTTTCTC 57.674 43.478 0.00 0.00 0.00 2.87
348 349 5.337652 CCTTCTCTCCACCGTAGATTTTTCT 60.338 44.000 0.00 0.00 0.00 2.52
349 350 4.870991 CCTTCTCTCCACCGTAGATTTTTC 59.129 45.833 0.00 0.00 0.00 2.29
350 351 4.530946 TCCTTCTCTCCACCGTAGATTTTT 59.469 41.667 0.00 0.00 0.00 1.94
351 352 4.081586 GTCCTTCTCTCCACCGTAGATTTT 60.082 45.833 0.00 0.00 0.00 1.82
352 353 3.447944 GTCCTTCTCTCCACCGTAGATTT 59.552 47.826 0.00 0.00 0.00 2.17
353 354 3.025262 GTCCTTCTCTCCACCGTAGATT 58.975 50.000 0.00 0.00 0.00 2.40
354 355 2.025226 TGTCCTTCTCTCCACCGTAGAT 60.025 50.000 0.00 0.00 0.00 1.98
355 356 1.353358 TGTCCTTCTCTCCACCGTAGA 59.647 52.381 0.00 0.00 0.00 2.59
356 357 1.835494 TGTCCTTCTCTCCACCGTAG 58.165 55.000 0.00 0.00 0.00 3.51
357 358 2.297698 TTGTCCTTCTCTCCACCGTA 57.702 50.000 0.00 0.00 0.00 4.02
358 359 1.420430 TTTGTCCTTCTCTCCACCGT 58.580 50.000 0.00 0.00 0.00 4.83
359 360 2.622436 GATTTGTCCTTCTCTCCACCG 58.378 52.381 0.00 0.00 0.00 4.94
360 361 2.573915 AGGATTTGTCCTTCTCTCCACC 59.426 50.000 0.00 0.00 36.56 4.61
361 362 3.990959 AGGATTTGTCCTTCTCTCCAC 57.009 47.619 0.00 0.00 36.56 4.02
370 371 4.597507 TGGTTCTACAGAAGGATTTGTCCT 59.402 41.667 0.00 0.00 43.04 3.85
371 372 4.906618 TGGTTCTACAGAAGGATTTGTCC 58.093 43.478 0.00 0.00 34.27 4.02
372 373 4.393371 GCTGGTTCTACAGAAGGATTTGTC 59.607 45.833 0.00 0.00 40.97 3.18
373 374 4.327680 GCTGGTTCTACAGAAGGATTTGT 58.672 43.478 0.00 0.00 40.97 2.83
374 375 3.691609 GGCTGGTTCTACAGAAGGATTTG 59.308 47.826 0.00 0.00 40.97 2.32
375 376 3.589288 AGGCTGGTTCTACAGAAGGATTT 59.411 43.478 0.00 0.00 40.97 2.17
376 377 3.054802 CAGGCTGGTTCTACAGAAGGATT 60.055 47.826 6.61 0.00 40.97 3.01
377 378 2.503356 CAGGCTGGTTCTACAGAAGGAT 59.497 50.000 6.61 0.00 40.97 3.24
378 379 1.902508 CAGGCTGGTTCTACAGAAGGA 59.097 52.381 6.61 0.00 40.97 3.36
379 380 1.625818 ACAGGCTGGTTCTACAGAAGG 59.374 52.381 20.34 0.00 40.97 3.46
380 381 3.511934 ACTACAGGCTGGTTCTACAGAAG 59.488 47.826 20.34 2.90 40.97 2.85
381 382 3.507411 ACTACAGGCTGGTTCTACAGAA 58.493 45.455 20.34 0.00 40.97 3.02
382 383 3.170991 ACTACAGGCTGGTTCTACAGA 57.829 47.619 20.34 0.00 40.97 3.41
383 384 4.017808 ACTACTACAGGCTGGTTCTACAG 58.982 47.826 20.34 8.54 41.41 2.74
384 385 4.043608 ACTACTACAGGCTGGTTCTACA 57.956 45.455 20.34 0.00 0.00 2.74
385 386 5.402997 AAACTACTACAGGCTGGTTCTAC 57.597 43.478 20.34 0.00 0.00 2.59
386 387 5.046807 GGAAAACTACTACAGGCTGGTTCTA 60.047 44.000 20.34 0.63 0.00 2.10
387 388 4.262938 GGAAAACTACTACAGGCTGGTTCT 60.263 45.833 20.34 0.00 0.00 3.01
388 389 4.001652 GGAAAACTACTACAGGCTGGTTC 58.998 47.826 20.34 8.30 0.00 3.62
389 390 3.556423 CGGAAAACTACTACAGGCTGGTT 60.556 47.826 20.34 9.77 0.00 3.67
390 391 2.028385 CGGAAAACTACTACAGGCTGGT 60.028 50.000 20.34 10.50 0.00 4.00
391 392 2.028385 ACGGAAAACTACTACAGGCTGG 60.028 50.000 20.34 4.16 0.00 4.85
392 393 3.314541 ACGGAAAACTACTACAGGCTG 57.685 47.619 14.16 14.16 0.00 4.85
393 394 4.525874 ACTTACGGAAAACTACTACAGGCT 59.474 41.667 0.00 0.00 0.00 4.58
394 395 4.624452 CACTTACGGAAAACTACTACAGGC 59.376 45.833 0.00 0.00 0.00 4.85
395 396 5.776744 ACACTTACGGAAAACTACTACAGG 58.223 41.667 0.00 0.00 0.00 4.00
396 397 7.025963 CCTACACTTACGGAAAACTACTACAG 58.974 42.308 0.00 0.00 0.00 2.74
397 398 6.714810 TCCTACACTTACGGAAAACTACTACA 59.285 38.462 0.00 0.00 0.00 2.74
398 399 7.145932 TCCTACACTTACGGAAAACTACTAC 57.854 40.000 0.00 0.00 0.00 2.73
399 400 7.944729 ATCCTACACTTACGGAAAACTACTA 57.055 36.000 0.00 0.00 0.00 1.82
400 401 6.847421 ATCCTACACTTACGGAAAACTACT 57.153 37.500 0.00 0.00 0.00 2.57
401 402 7.895975 AAATCCTACACTTACGGAAAACTAC 57.104 36.000 0.00 0.00 0.00 2.73
402 403 8.776470 CAAAAATCCTACACTTACGGAAAACTA 58.224 33.333 0.00 0.00 0.00 2.24
403 404 7.499895 TCAAAAATCCTACACTTACGGAAAACT 59.500 33.333 0.00 0.00 0.00 2.66
404 405 7.641760 TCAAAAATCCTACACTTACGGAAAAC 58.358 34.615 0.00 0.00 0.00 2.43
405 406 7.804843 TCAAAAATCCTACACTTACGGAAAA 57.195 32.000 0.00 0.00 0.00 2.29
406 407 7.881232 AGATCAAAAATCCTACACTTACGGAAA 59.119 33.333 0.00 0.00 0.00 3.13
407 408 7.333423 CAGATCAAAAATCCTACACTTACGGAA 59.667 37.037 0.00 0.00 0.00 4.30
408 409 6.816640 CAGATCAAAAATCCTACACTTACGGA 59.183 38.462 0.00 0.00 0.00 4.69
409 410 6.816640 TCAGATCAAAAATCCTACACTTACGG 59.183 38.462 0.00 0.00 0.00 4.02
410 411 7.545965 ACTCAGATCAAAAATCCTACACTTACG 59.454 37.037 0.00 0.00 0.00 3.18
411 412 8.660373 CACTCAGATCAAAAATCCTACACTTAC 58.340 37.037 0.00 0.00 0.00 2.34
412 413 7.334421 GCACTCAGATCAAAAATCCTACACTTA 59.666 37.037 0.00 0.00 0.00 2.24
413 414 6.150140 GCACTCAGATCAAAAATCCTACACTT 59.850 38.462 0.00 0.00 0.00 3.16
414 415 5.645497 GCACTCAGATCAAAAATCCTACACT 59.355 40.000 0.00 0.00 0.00 3.55
415 416 5.163713 GGCACTCAGATCAAAAATCCTACAC 60.164 44.000 0.00 0.00 0.00 2.90
416 417 4.943705 GGCACTCAGATCAAAAATCCTACA 59.056 41.667 0.00 0.00 0.00 2.74
417 418 4.336713 GGGCACTCAGATCAAAAATCCTAC 59.663 45.833 0.00 0.00 0.00 3.18
418 419 4.526970 GGGCACTCAGATCAAAAATCCTA 58.473 43.478 0.00 0.00 0.00 2.94
419 420 3.359950 GGGCACTCAGATCAAAAATCCT 58.640 45.455 0.00 0.00 0.00 3.24
420 421 2.428530 GGGGCACTCAGATCAAAAATCC 59.571 50.000 0.00 0.00 0.00 3.01
421 422 2.098117 CGGGGCACTCAGATCAAAAATC 59.902 50.000 0.00 0.00 0.00 2.17
422 423 2.094675 CGGGGCACTCAGATCAAAAAT 58.905 47.619 0.00 0.00 0.00 1.82
423 424 1.533625 CGGGGCACTCAGATCAAAAA 58.466 50.000 0.00 0.00 0.00 1.94
424 425 0.322456 CCGGGGCACTCAGATCAAAA 60.322 55.000 0.00 0.00 0.00 2.44
425 426 1.198094 TCCGGGGCACTCAGATCAAA 61.198 55.000 0.00 0.00 0.00 2.69
426 427 1.198094 TTCCGGGGCACTCAGATCAA 61.198 55.000 0.00 0.00 0.00 2.57
427 428 1.612146 TTCCGGGGCACTCAGATCA 60.612 57.895 0.00 0.00 0.00 2.92
428 429 1.144936 CTTCCGGGGCACTCAGATC 59.855 63.158 0.00 0.00 0.00 2.75
434 435 2.602568 ACGTACTTCCGGGGCACT 60.603 61.111 0.00 0.00 0.00 4.40
444 445 1.031571 TATGGCCGGACGACGTACTT 61.032 55.000 5.05 0.00 42.24 2.24
445 446 0.820891 ATATGGCCGGACGACGTACT 60.821 55.000 5.05 0.00 42.24 2.73
447 448 1.603456 TTATATGGCCGGACGACGTA 58.397 50.000 5.05 0.00 42.24 3.57
449 450 1.855513 TTTTATATGGCCGGACGACG 58.144 50.000 5.05 0.00 43.80 5.12
616 619 9.804758 GTAAAGCTATTACTAGATGTGACAACT 57.195 33.333 0.02 0.02 0.00 3.16
629 632 9.968870 GTAGTCTAGCAATGTAAAGCTATTACT 57.031 33.333 15.26 0.00 41.99 2.24
630 633 9.745880 TGTAGTCTAGCAATGTAAAGCTATTAC 57.254 33.333 10.19 10.19 41.99 1.89
667 670 6.131544 ACAACACTGTGTGGAAAATACTTC 57.868 37.500 21.67 0.00 37.94 3.01
690 1986 7.658167 TGATACTTCAAACGGACTGTTGATTTA 59.342 33.333 0.00 0.00 40.84 1.40
762 2119 3.365265 GCCGAGGCTTTGGGTGTG 61.365 66.667 6.90 0.00 38.26 3.82
971 2339 5.009911 TGTTTGATGAACTGCTTGCAACTAT 59.990 36.000 0.00 0.00 39.08 2.12
1059 2432 2.438614 TCGCGAGCTGCTAGGACT 60.439 61.111 3.71 0.00 43.27 3.85
1113 2486 2.783135 CTGTACTGCACCATCCAACTT 58.217 47.619 0.00 0.00 0.00 2.66
1239 2612 1.278985 TCGGTGAACTGATTGATGCCT 59.721 47.619 0.00 0.00 0.00 4.75
1730 3108 2.509052 TGTCATCTGCCGCAGTATAC 57.491 50.000 19.77 15.20 32.61 1.47
1868 3246 4.607293 TTGGAATGTCATATCTCCTCCG 57.393 45.455 4.12 0.00 0.00 4.63
2060 3438 1.271001 CCACACATGCCTCTCTTGTCA 60.271 52.381 0.00 0.00 31.52 3.58
2309 3697 7.092444 ACAAGTGTGAAATCTCCCAAGGATATA 60.092 37.037 0.00 0.00 0.00 0.86
2310 3698 5.983333 AGTGTGAAATCTCCCAAGGATAT 57.017 39.130 0.00 0.00 0.00 1.63
2433 3832 6.071616 GCCATTTTCCACATTGTTTACCTAGA 60.072 38.462 0.00 0.00 0.00 2.43
2435 3834 5.540337 TGCCATTTTCCACATTGTTTACCTA 59.460 36.000 0.00 0.00 0.00 3.08
2438 3837 5.537188 TCTGCCATTTTCCACATTGTTTAC 58.463 37.500 0.00 0.00 0.00 2.01
2476 3876 3.650942 TCCTCCTTCAGGCTTCAAAGTTA 59.349 43.478 0.00 0.00 43.08 2.24
2531 3934 4.902448 AGAAGGTCCCATCCTAGTTATGTC 59.098 45.833 0.00 0.00 36.74 3.06
2572 3976 3.968649 TGTTAAGCGTTGAAGAGTACGT 58.031 40.909 0.00 0.00 39.80 3.57
2622 4029 3.547413 CGTAATCGTGTAGATCAAGGCGA 60.547 47.826 0.00 0.02 38.98 5.54
2645 4052 1.369625 CCCATGCGGTCTAAAGTGAC 58.630 55.000 0.00 0.00 36.31 3.67
2683 4090 1.239968 CCTGGACTGGCTTCTTGTGC 61.240 60.000 0.00 0.00 0.00 4.57
2727 4134 0.181350 CCTATGGCACTCCTTGGGTC 59.819 60.000 0.00 0.00 34.63 4.46
2728 4135 2.311287 CCTATGGCACTCCTTGGGT 58.689 57.895 0.00 0.00 34.63 4.51
2762 4169 1.729267 ATGACCCCAAAGTGCCCACT 61.729 55.000 0.00 0.00 44.94 4.00
2797 4204 3.007398 TGTTTTGGCCAAGTTTGTGAAGT 59.993 39.130 19.48 0.00 0.00 3.01
2814 4221 8.761689 ACATCTTAAGCCCAATATTGATGTTTT 58.238 29.630 17.23 8.77 39.81 2.43
2816 4223 7.342799 ACACATCTTAAGCCCAATATTGATGTT 59.657 33.333 17.23 8.78 40.50 2.71
2836 4243 3.418684 AGTGGTGGAGGTAAACACATC 57.581 47.619 0.00 0.00 39.31 3.06
2845 4252 2.054799 ACACATGTTAGTGGTGGAGGT 58.945 47.619 0.00 0.00 43.72 3.85
2850 4257 4.768145 CACGTTTACACATGTTAGTGGTG 58.232 43.478 0.00 0.00 43.72 4.17
2867 4274 4.613622 GCAAGACAAATACTCATGCACGTT 60.614 41.667 0.00 0.00 32.80 3.99
2872 4279 6.094719 TCAAATGCAAGACAAATACTCATGC 58.905 36.000 0.00 0.00 0.00 4.06
2893 4300 6.368516 GGCAAATCGAAAATCCAAAAGATCAA 59.631 34.615 0.00 0.00 32.47 2.57
2910 4317 0.734889 GGTCATGTGAGGGCAAATCG 59.265 55.000 0.00 0.00 0.00 3.34
2930 4337 7.123247 CACAAAACTGAATAGATCCAAGGGATT 59.877 37.037 0.00 0.00 43.27 3.01
2934 4341 5.711976 ACCACAAAACTGAATAGATCCAAGG 59.288 40.000 0.00 0.00 0.00 3.61
2990 4399 6.591834 AGTGTTGATGAAAGATTCTAACTCCG 59.408 38.462 0.00 0.00 0.00 4.63
2997 4406 7.397221 TCACCATAGTGTTGATGAAAGATTCT 58.603 34.615 0.00 0.00 44.83 2.40
3035 4444 0.037975 CCAAAAGTGCAGGCCATCAC 60.038 55.000 16.79 16.79 0.00 3.06
3042 4451 4.520492 GGGATGATATACCAAAAGTGCAGG 59.480 45.833 0.00 0.00 31.65 4.85
3071 4480 4.161189 AGTGGTGAGTGATGAATGGACTAG 59.839 45.833 0.00 0.00 0.00 2.57
3082 4491 1.632409 AGATGGCAAGTGGTGAGTGAT 59.368 47.619 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.