Multiple sequence alignment - TraesCS6A01G346300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G346300 chr6A 100.000 2540 0 0 1 2540 579503794 579506333 0.000000e+00 4691.0
1 TraesCS6A01G346300 chr6D 92.335 2244 102 34 324 2540 433490185 433492385 0.000000e+00 3127.0
2 TraesCS6A01G346300 chr6D 93.258 89 6 0 1 89 395532262 395532350 5.700000e-27 132.0
3 TraesCS6A01G346300 chr6B 90.630 1334 62 17 324 1632 654774511 654775806 0.000000e+00 1712.0
4 TraesCS6A01G346300 chr5D 96.629 89 3 0 1 89 24087356 24087268 5.660000e-32 148.0
5 TraesCS6A01G346300 chr2D 96.629 89 3 0 1 89 238162182 238162094 5.660000e-32 148.0
6 TraesCS6A01G346300 chr2D 94.382 89 5 0 1 89 639720070 639719982 1.230000e-28 137.0
7 TraesCS6A01G346300 chr2D 95.349 43 2 0 168 210 301372977 301372935 4.530000e-08 69.4
8 TraesCS6A01G346300 chr7D 95.506 89 4 0 1 89 39086772 39086860 2.630000e-30 143.0
9 TraesCS6A01G346300 chr7D 94.382 89 5 0 1 89 593660862 593660950 1.230000e-28 137.0
10 TraesCS6A01G346300 chr7D 93.478 46 3 0 165 210 113132877 113132922 4.530000e-08 69.4
11 TraesCS6A01G346300 chr7D 93.478 46 3 0 165 210 163612468 163612513 4.530000e-08 69.4
12 TraesCS6A01G346300 chr5B 95.506 89 4 0 1 89 128785466 128785554 2.630000e-30 143.0
13 TraesCS6A01G346300 chr4A 95.506 89 4 0 1 89 352506129 352506041 2.630000e-30 143.0
14 TraesCS6A01G346300 chr3D 94.382 89 5 0 1 89 572993974 572993886 1.230000e-28 137.0
15 TraesCS6A01G346300 chr3D 97.436 39 0 1 173 210 433164375 433164413 5.870000e-07 65.8
16 TraesCS6A01G346300 chr3D 93.023 43 3 0 168 210 591371042 591371000 2.110000e-06 63.9
17 TraesCS6A01G346300 chr1D 93.478 46 3 0 165 210 385121041 385121086 4.530000e-08 69.4
18 TraesCS6A01G346300 chr4D 95.238 42 2 0 169 210 496021971 496022012 1.630000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G346300 chr6A 579503794 579506333 2539 False 4691 4691 100.000 1 2540 1 chr6A.!!$F1 2539
1 TraesCS6A01G346300 chr6D 433490185 433492385 2200 False 3127 3127 92.335 324 2540 1 chr6D.!!$F2 2216
2 TraesCS6A01G346300 chr6B 654774511 654775806 1295 False 1712 1712 90.630 324 1632 1 chr6B.!!$F1 1308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.033011 AGTCCCACCGTAGATGCTCT 60.033 55.0 0.0 0.0 0.0 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1640 1.070758 ACATGGCAAGACGACTTCACT 59.929 47.619 0.0 0.0 33.7 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.162640 GTGCTCGTCACGCATGTA 57.837 55.556 0.00 0.00 39.89 2.29
20 21 1.702299 GTGCTCGTCACGCATGTAC 59.298 57.895 0.00 0.00 39.89 2.90
21 22 0.732880 GTGCTCGTCACGCATGTACT 60.733 55.000 0.00 0.00 39.89 2.73
22 23 0.456142 TGCTCGTCACGCATGTACTC 60.456 55.000 0.00 0.00 31.40 2.59
23 24 0.456142 GCTCGTCACGCATGTACTCA 60.456 55.000 0.00 0.00 0.00 3.41
24 25 1.977188 CTCGTCACGCATGTACTCAA 58.023 50.000 0.00 0.00 0.00 3.02
25 26 1.649171 CTCGTCACGCATGTACTCAAC 59.351 52.381 0.00 0.00 0.00 3.18
26 27 0.362179 CGTCACGCATGTACTCAACG 59.638 55.000 0.00 0.00 34.75 4.10
27 28 1.693467 GTCACGCATGTACTCAACGA 58.307 50.000 0.00 0.00 33.49 3.85
28 29 1.649171 GTCACGCATGTACTCAACGAG 59.351 52.381 0.00 0.00 35.52 4.18
29 30 0.366871 CACGCATGTACTCAACGAGC 59.633 55.000 0.00 0.00 32.04 5.03
30 31 0.243907 ACGCATGTACTCAACGAGCT 59.756 50.000 0.00 0.00 32.04 4.09
31 32 0.642291 CGCATGTACTCAACGAGCTG 59.358 55.000 0.00 0.00 32.04 4.24
32 33 1.002366 GCATGTACTCAACGAGCTGG 58.998 55.000 0.00 0.00 32.04 4.85
33 34 1.002366 CATGTACTCAACGAGCTGGC 58.998 55.000 0.00 0.00 32.04 4.85
34 35 0.458543 ATGTACTCAACGAGCTGGCG 60.459 55.000 0.00 0.00 32.04 5.69
35 36 1.211969 GTACTCAACGAGCTGGCGA 59.788 57.895 1.33 0.00 32.04 5.54
36 37 1.071567 GTACTCAACGAGCTGGCGAC 61.072 60.000 1.33 0.00 32.04 5.19
37 38 2.523184 TACTCAACGAGCTGGCGACG 62.523 60.000 1.33 11.64 32.04 5.12
61 62 3.554692 GTCATGGACGAAGCCGCG 61.555 66.667 0.00 0.00 39.95 6.46
62 63 4.812476 TCATGGACGAAGCCGCGG 62.812 66.667 24.05 24.05 39.95 6.46
63 64 4.812476 CATGGACGAAGCCGCGGA 62.812 66.667 33.48 5.03 39.95 5.54
64 65 3.849951 ATGGACGAAGCCGCGGAT 61.850 61.111 33.48 23.90 39.95 4.18
65 66 4.812476 TGGACGAAGCCGCGGATG 62.812 66.667 33.48 15.38 39.95 3.51
66 67 4.814294 GGACGAAGCCGCGGATGT 62.814 66.667 33.48 19.29 39.95 3.06
67 68 2.813908 GACGAAGCCGCGGATGTT 60.814 61.111 33.48 18.92 39.95 2.71
68 69 2.799540 GACGAAGCCGCGGATGTTC 61.800 63.158 33.48 24.91 39.95 3.18
69 70 3.564027 CGAAGCCGCGGATGTTCC 61.564 66.667 33.48 10.20 0.00 3.62
70 71 2.435938 GAAGCCGCGGATGTTCCA 60.436 61.111 33.48 0.00 35.91 3.53
71 72 2.033448 AAGCCGCGGATGTTCCAA 59.967 55.556 33.48 0.00 35.91 3.53
72 73 1.582610 GAAGCCGCGGATGTTCCAAA 61.583 55.000 33.48 0.00 35.91 3.28
73 74 1.175983 AAGCCGCGGATGTTCCAAAA 61.176 50.000 33.48 0.00 35.91 2.44
74 75 1.154035 GCCGCGGATGTTCCAAAAG 60.154 57.895 33.48 0.00 35.91 2.27
75 76 1.582610 GCCGCGGATGTTCCAAAAGA 61.583 55.000 33.48 0.00 35.91 2.52
76 77 0.447801 CCGCGGATGTTCCAAAAGAG 59.552 55.000 24.07 0.00 35.91 2.85
77 78 0.447801 CGCGGATGTTCCAAAAGAGG 59.552 55.000 0.00 0.00 35.91 3.69
78 79 1.821216 GCGGATGTTCCAAAAGAGGA 58.179 50.000 0.00 0.00 35.91 3.71
79 80 1.468914 GCGGATGTTCCAAAAGAGGAC 59.531 52.381 0.00 0.00 37.42 3.85
80 81 2.084546 CGGATGTTCCAAAAGAGGACC 58.915 52.381 0.00 0.00 37.42 4.46
81 82 2.447443 GGATGTTCCAAAAGAGGACCC 58.553 52.381 0.00 0.00 37.42 4.46
82 83 2.225017 GGATGTTCCAAAAGAGGACCCA 60.225 50.000 0.00 0.00 37.42 4.51
83 84 2.358322 TGTTCCAAAAGAGGACCCAC 57.642 50.000 0.00 0.00 37.42 4.61
84 85 1.566703 TGTTCCAAAAGAGGACCCACA 59.433 47.619 0.00 0.00 37.42 4.17
85 86 2.176798 TGTTCCAAAAGAGGACCCACAT 59.823 45.455 0.00 0.00 37.42 3.21
86 87 2.820197 GTTCCAAAAGAGGACCCACATC 59.180 50.000 0.00 0.00 37.42 3.06
87 88 2.348472 TCCAAAAGAGGACCCACATCT 58.652 47.619 0.00 0.00 41.61 2.90
88 89 3.526899 TCCAAAAGAGGACCCACATCTA 58.473 45.455 0.00 0.00 38.77 1.98
89 90 3.519510 TCCAAAAGAGGACCCACATCTAG 59.480 47.826 0.00 0.00 38.77 2.43
90 91 3.274288 CAAAAGAGGACCCACATCTAGC 58.726 50.000 0.00 0.00 38.77 3.42
91 92 1.115467 AAGAGGACCCACATCTAGCG 58.885 55.000 0.00 0.00 38.77 4.26
92 93 0.757188 AGAGGACCCACATCTAGCGG 60.757 60.000 0.00 0.00 37.90 5.52
93 94 2.109181 GGACCCACATCTAGCGGC 59.891 66.667 0.00 0.00 0.00 6.53
94 95 2.109181 GACCCACATCTAGCGGCC 59.891 66.667 0.00 0.00 0.00 6.13
95 96 2.687200 ACCCACATCTAGCGGCCA 60.687 61.111 2.24 0.00 0.00 5.36
96 97 2.109799 CCCACATCTAGCGGCCAG 59.890 66.667 2.24 0.00 0.00 4.85
97 98 2.735772 CCCACATCTAGCGGCCAGT 61.736 63.158 2.24 0.00 0.00 4.00
98 99 1.227380 CCACATCTAGCGGCCAGTC 60.227 63.158 2.24 0.00 0.00 3.51
99 100 1.517361 CACATCTAGCGGCCAGTCA 59.483 57.895 2.24 0.00 0.00 3.41
100 101 0.807667 CACATCTAGCGGCCAGTCAC 60.808 60.000 2.24 0.00 0.00 3.67
101 102 1.589993 CATCTAGCGGCCAGTCACG 60.590 63.158 2.24 0.00 0.00 4.35
102 103 2.052690 ATCTAGCGGCCAGTCACGT 61.053 57.895 2.24 0.00 0.00 4.49
103 104 1.605058 ATCTAGCGGCCAGTCACGTT 61.605 55.000 2.24 0.00 0.00 3.99
104 105 1.374252 CTAGCGGCCAGTCACGTTT 60.374 57.895 2.24 0.00 0.00 3.60
105 106 1.626654 CTAGCGGCCAGTCACGTTTG 61.627 60.000 2.24 0.00 0.00 2.93
106 107 4.683334 GCGGCCAGTCACGTTTGC 62.683 66.667 2.24 0.00 0.00 3.68
107 108 3.276091 CGGCCAGTCACGTTTGCA 61.276 61.111 2.24 0.00 0.00 4.08
108 109 2.639286 GGCCAGTCACGTTTGCAG 59.361 61.111 0.00 0.00 0.00 4.41
109 110 1.891919 GGCCAGTCACGTTTGCAGA 60.892 57.895 0.00 0.00 0.00 4.26
110 111 1.237285 GGCCAGTCACGTTTGCAGAT 61.237 55.000 0.00 0.00 0.00 2.90
111 112 0.110056 GCCAGTCACGTTTGCAGATG 60.110 55.000 0.00 0.00 0.00 2.90
112 113 1.229428 CCAGTCACGTTTGCAGATGT 58.771 50.000 0.00 0.00 0.00 3.06
113 114 1.603802 CCAGTCACGTTTGCAGATGTT 59.396 47.619 0.00 0.00 0.00 2.71
114 115 2.033299 CCAGTCACGTTTGCAGATGTTT 59.967 45.455 0.00 0.00 0.00 2.83
115 116 3.038017 CAGTCACGTTTGCAGATGTTTG 58.962 45.455 0.00 0.00 0.00 2.93
116 117 2.942376 AGTCACGTTTGCAGATGTTTGA 59.058 40.909 0.00 0.00 0.00 2.69
117 118 3.002656 AGTCACGTTTGCAGATGTTTGAG 59.997 43.478 0.00 0.00 0.00 3.02
118 119 2.290367 TCACGTTTGCAGATGTTTGAGG 59.710 45.455 0.00 0.00 0.00 3.86
119 120 1.608590 ACGTTTGCAGATGTTTGAGGG 59.391 47.619 0.00 0.00 0.00 4.30
120 121 1.068333 CGTTTGCAGATGTTTGAGGGG 60.068 52.381 0.00 0.00 0.00 4.79
121 122 1.963515 GTTTGCAGATGTTTGAGGGGT 59.036 47.619 0.00 0.00 0.00 4.95
122 123 1.909700 TTGCAGATGTTTGAGGGGTC 58.090 50.000 0.00 0.00 0.00 4.46
123 124 0.321564 TGCAGATGTTTGAGGGGTCG 60.322 55.000 0.00 0.00 0.00 4.79
124 125 0.036388 GCAGATGTTTGAGGGGTCGA 60.036 55.000 0.00 0.00 0.00 4.20
125 126 1.610624 GCAGATGTTTGAGGGGTCGAA 60.611 52.381 0.00 0.00 0.00 3.71
126 127 2.941415 GCAGATGTTTGAGGGGTCGAAT 60.941 50.000 0.00 0.00 0.00 3.34
127 128 3.347216 CAGATGTTTGAGGGGTCGAATT 58.653 45.455 0.00 0.00 0.00 2.17
128 129 3.758554 CAGATGTTTGAGGGGTCGAATTT 59.241 43.478 0.00 0.00 0.00 1.82
129 130 3.758554 AGATGTTTGAGGGGTCGAATTTG 59.241 43.478 0.00 0.00 0.00 2.32
130 131 1.611491 TGTTTGAGGGGTCGAATTTGC 59.389 47.619 0.00 0.00 0.00 3.68
131 132 1.886542 GTTTGAGGGGTCGAATTTGCT 59.113 47.619 0.00 0.00 0.00 3.91
132 133 3.078837 GTTTGAGGGGTCGAATTTGCTA 58.921 45.455 0.00 0.00 0.00 3.49
133 134 3.426787 TTGAGGGGTCGAATTTGCTAA 57.573 42.857 0.00 0.00 0.00 3.09
134 135 2.985896 TGAGGGGTCGAATTTGCTAAG 58.014 47.619 0.00 0.00 0.00 2.18
135 136 2.304761 TGAGGGGTCGAATTTGCTAAGT 59.695 45.455 0.00 0.00 0.00 2.24
136 137 2.937149 GAGGGGTCGAATTTGCTAAGTC 59.063 50.000 0.00 0.00 0.00 3.01
137 138 2.014857 GGGGTCGAATTTGCTAAGTCC 58.985 52.381 2.88 0.00 0.00 3.85
138 139 2.014857 GGGTCGAATTTGCTAAGTCCC 58.985 52.381 2.88 0.00 0.00 4.46
139 140 2.617021 GGGTCGAATTTGCTAAGTCCCA 60.617 50.000 2.88 0.00 33.33 4.37
140 141 2.418976 GGTCGAATTTGCTAAGTCCCAC 59.581 50.000 2.88 0.67 0.00 4.61
141 142 2.418976 GTCGAATTTGCTAAGTCCCACC 59.581 50.000 2.88 0.00 0.00 4.61
142 143 1.396996 CGAATTTGCTAAGTCCCACCG 59.603 52.381 2.88 0.00 0.00 4.94
143 144 2.433436 GAATTTGCTAAGTCCCACCGT 58.567 47.619 0.00 0.00 0.00 4.83
144 145 3.602483 GAATTTGCTAAGTCCCACCGTA 58.398 45.455 0.00 0.00 0.00 4.02
145 146 2.754946 TTTGCTAAGTCCCACCGTAG 57.245 50.000 0.00 0.00 0.00 3.51
146 147 1.927487 TTGCTAAGTCCCACCGTAGA 58.073 50.000 0.00 0.00 0.00 2.59
147 148 2.154567 TGCTAAGTCCCACCGTAGAT 57.845 50.000 0.00 0.00 0.00 1.98
148 149 1.754803 TGCTAAGTCCCACCGTAGATG 59.245 52.381 0.00 0.00 0.00 2.90
149 150 1.538419 GCTAAGTCCCACCGTAGATGC 60.538 57.143 0.00 0.00 0.00 3.91
150 151 2.032620 CTAAGTCCCACCGTAGATGCT 58.967 52.381 0.00 0.00 0.00 3.79
151 152 0.824759 AAGTCCCACCGTAGATGCTC 59.175 55.000 0.00 0.00 0.00 4.26
152 153 0.033011 AGTCCCACCGTAGATGCTCT 60.033 55.000 0.00 0.00 0.00 4.09
153 154 1.214673 AGTCCCACCGTAGATGCTCTA 59.785 52.381 0.00 0.00 0.00 2.43
154 155 2.029623 GTCCCACCGTAGATGCTCTAA 58.970 52.381 0.00 0.00 29.58 2.10
155 156 2.628657 GTCCCACCGTAGATGCTCTAAT 59.371 50.000 0.00 0.00 29.58 1.73
156 157 3.825014 GTCCCACCGTAGATGCTCTAATA 59.175 47.826 0.00 0.00 29.58 0.98
157 158 4.280174 GTCCCACCGTAGATGCTCTAATAA 59.720 45.833 0.00 0.00 29.58 1.40
158 159 4.897076 TCCCACCGTAGATGCTCTAATAAA 59.103 41.667 0.00 0.00 29.58 1.40
159 160 5.364446 TCCCACCGTAGATGCTCTAATAAAA 59.636 40.000 0.00 0.00 29.58 1.52
160 161 6.053005 CCCACCGTAGATGCTCTAATAAAAA 58.947 40.000 0.00 0.00 29.58 1.94
180 181 4.518278 AAAAATTGGAGCAAAAAGGGGT 57.482 36.364 0.00 0.00 0.00 4.95
181 182 4.518278 AAAATTGGAGCAAAAAGGGGTT 57.482 36.364 0.00 0.00 0.00 4.11
182 183 4.518278 AAATTGGAGCAAAAAGGGGTTT 57.482 36.364 0.00 0.00 0.00 3.27
183 184 3.769739 ATTGGAGCAAAAAGGGGTTTC 57.230 42.857 0.00 0.00 0.00 2.78
184 185 1.419381 TGGAGCAAAAAGGGGTTTCC 58.581 50.000 0.00 0.00 0.00 3.13
196 197 3.186345 GGTTTCCCCTCCGATTTCC 57.814 57.895 0.00 0.00 0.00 3.13
197 198 0.330267 GGTTTCCCCTCCGATTTCCA 59.670 55.000 0.00 0.00 0.00 3.53
198 199 1.063942 GGTTTCCCCTCCGATTTCCAT 60.064 52.381 0.00 0.00 0.00 3.41
199 200 2.623239 GGTTTCCCCTCCGATTTCCATT 60.623 50.000 0.00 0.00 0.00 3.16
200 201 3.372241 GGTTTCCCCTCCGATTTCCATTA 60.372 47.826 0.00 0.00 0.00 1.90
201 202 4.470602 GTTTCCCCTCCGATTTCCATTAT 58.529 43.478 0.00 0.00 0.00 1.28
202 203 5.457052 GGTTTCCCCTCCGATTTCCATTATA 60.457 44.000 0.00 0.00 0.00 0.98
203 204 5.499004 TTCCCCTCCGATTTCCATTATAG 57.501 43.478 0.00 0.00 0.00 1.31
204 205 4.758822 TCCCCTCCGATTTCCATTATAGA 58.241 43.478 0.00 0.00 0.00 1.98
205 206 5.159637 TCCCCTCCGATTTCCATTATAGAA 58.840 41.667 0.00 0.00 0.00 2.10
206 207 5.609284 TCCCCTCCGATTTCCATTATAGAAA 59.391 40.000 0.00 0.00 37.61 2.52
207 208 5.705905 CCCCTCCGATTTCCATTATAGAAAC 59.294 44.000 0.00 0.00 36.13 2.78
208 209 5.705905 CCCTCCGATTTCCATTATAGAAACC 59.294 44.000 0.00 0.00 36.13 3.27
209 210 6.296026 CCTCCGATTTCCATTATAGAAACCA 58.704 40.000 0.00 0.00 36.13 3.67
210 211 6.942576 CCTCCGATTTCCATTATAGAAACCAT 59.057 38.462 0.00 0.00 36.13 3.55
211 212 7.119846 CCTCCGATTTCCATTATAGAAACCATC 59.880 40.741 0.00 0.00 36.13 3.51
212 213 7.513856 TCCGATTTCCATTATAGAAACCATCA 58.486 34.615 0.00 0.00 36.13 3.07
213 214 7.996066 TCCGATTTCCATTATAGAAACCATCAA 59.004 33.333 0.00 0.00 36.13 2.57
214 215 8.292448 CCGATTTCCATTATAGAAACCATCAAG 58.708 37.037 0.00 0.00 36.13 3.02
215 216 7.805071 CGATTTCCATTATAGAAACCATCAAGC 59.195 37.037 0.00 0.00 36.13 4.01
216 217 7.953005 TTTCCATTATAGAAACCATCAAGCA 57.047 32.000 0.00 0.00 0.00 3.91
217 218 8.537728 TTTCCATTATAGAAACCATCAAGCAT 57.462 30.769 0.00 0.00 0.00 3.79
218 219 7.750229 TCCATTATAGAAACCATCAAGCATC 57.250 36.000 0.00 0.00 0.00 3.91
219 220 6.716628 TCCATTATAGAAACCATCAAGCATCC 59.283 38.462 0.00 0.00 0.00 3.51
220 221 6.348786 CCATTATAGAAACCATCAAGCATCCG 60.349 42.308 0.00 0.00 0.00 4.18
221 222 2.787473 AGAAACCATCAAGCATCCGA 57.213 45.000 0.00 0.00 0.00 4.55
222 223 2.359900 AGAAACCATCAAGCATCCGAC 58.640 47.619 0.00 0.00 0.00 4.79
223 224 2.083774 GAAACCATCAAGCATCCGACA 58.916 47.619 0.00 0.00 0.00 4.35
224 225 1.742761 AACCATCAAGCATCCGACAG 58.257 50.000 0.00 0.00 0.00 3.51
225 226 0.615331 ACCATCAAGCATCCGACAGT 59.385 50.000 0.00 0.00 0.00 3.55
226 227 1.293924 CCATCAAGCATCCGACAGTC 58.706 55.000 0.00 0.00 0.00 3.51
227 228 1.405933 CCATCAAGCATCCGACAGTCA 60.406 52.381 0.41 0.00 0.00 3.41
228 229 1.662629 CATCAAGCATCCGACAGTCAC 59.337 52.381 0.41 0.00 0.00 3.67
229 230 0.678950 TCAAGCATCCGACAGTCACA 59.321 50.000 0.41 0.00 0.00 3.58
230 231 1.073964 CAAGCATCCGACAGTCACAG 58.926 55.000 0.41 0.00 0.00 3.66
231 232 0.681733 AAGCATCCGACAGTCACAGT 59.318 50.000 0.41 0.00 0.00 3.55
232 233 0.037882 AGCATCCGACAGTCACAGTG 60.038 55.000 0.41 0.00 0.00 3.66
233 234 0.319900 GCATCCGACAGTCACAGTGT 60.320 55.000 0.00 0.00 33.77 3.55
234 235 1.873903 GCATCCGACAGTCACAGTGTT 60.874 52.381 0.00 0.00 30.64 3.32
235 236 2.483876 CATCCGACAGTCACAGTGTTT 58.516 47.619 0.00 0.00 30.64 2.83
236 237 2.684001 TCCGACAGTCACAGTGTTTT 57.316 45.000 0.00 0.00 30.64 2.43
237 238 3.804786 TCCGACAGTCACAGTGTTTTA 57.195 42.857 0.00 0.00 30.64 1.52
238 239 4.126208 TCCGACAGTCACAGTGTTTTAA 57.874 40.909 0.00 0.00 30.64 1.52
239 240 4.505808 TCCGACAGTCACAGTGTTTTAAA 58.494 39.130 0.00 0.00 30.64 1.52
240 241 4.330620 TCCGACAGTCACAGTGTTTTAAAC 59.669 41.667 0.00 0.20 30.64 2.01
241 242 4.495184 CCGACAGTCACAGTGTTTTAAACC 60.495 45.833 5.32 0.00 30.64 3.27
242 243 4.331717 CGACAGTCACAGTGTTTTAAACCT 59.668 41.667 5.32 0.00 30.64 3.50
243 244 5.560966 ACAGTCACAGTGTTTTAAACCTG 57.439 39.130 18.06 18.06 36.43 4.00
244 245 4.142469 ACAGTCACAGTGTTTTAAACCTGC 60.142 41.667 18.98 8.90 34.85 4.85
245 246 4.096382 CAGTCACAGTGTTTTAAACCTGCT 59.904 41.667 18.98 10.35 34.85 4.24
246 247 5.295787 CAGTCACAGTGTTTTAAACCTGCTA 59.704 40.000 18.98 9.78 34.85 3.49
247 248 5.296035 AGTCACAGTGTTTTAAACCTGCTAC 59.704 40.000 18.98 16.98 34.85 3.58
248 249 5.065474 GTCACAGTGTTTTAAACCTGCTACA 59.935 40.000 18.98 0.00 34.85 2.74
249 250 5.825679 TCACAGTGTTTTAAACCTGCTACAT 59.174 36.000 18.98 4.47 34.85 2.29
250 251 6.993308 TCACAGTGTTTTAAACCTGCTACATA 59.007 34.615 18.98 4.08 34.85 2.29
251 252 7.499563 TCACAGTGTTTTAAACCTGCTACATAA 59.500 33.333 18.98 3.17 34.85 1.90
252 253 7.589954 CACAGTGTTTTAAACCTGCTACATAAC 59.410 37.037 18.98 3.85 34.85 1.89
253 254 7.283580 ACAGTGTTTTAAACCTGCTACATAACA 59.716 33.333 18.98 0.00 34.85 2.41
254 255 8.296713 CAGTGTTTTAAACCTGCTACATAACAT 58.703 33.333 5.32 0.00 0.00 2.71
255 256 8.512138 AGTGTTTTAAACCTGCTACATAACATC 58.488 33.333 5.32 0.00 0.00 3.06
256 257 8.293867 GTGTTTTAAACCTGCTACATAACATCA 58.706 33.333 5.32 0.00 0.00 3.07
257 258 9.019656 TGTTTTAAACCTGCTACATAACATCAT 57.980 29.630 5.32 0.00 0.00 2.45
258 259 9.855021 GTTTTAAACCTGCTACATAACATCATT 57.145 29.630 0.00 0.00 0.00 2.57
261 262 7.944729 AAACCTGCTACATAACATCATTTCT 57.055 32.000 0.00 0.00 0.00 2.52
263 264 8.438676 AACCTGCTACATAACATCATTTCTAC 57.561 34.615 0.00 0.00 0.00 2.59
264 265 6.701841 ACCTGCTACATAACATCATTTCTACG 59.298 38.462 0.00 0.00 0.00 3.51
265 266 6.923508 CCTGCTACATAACATCATTTCTACGA 59.076 38.462 0.00 0.00 0.00 3.43
266 267 7.438160 CCTGCTACATAACATCATTTCTACGAA 59.562 37.037 0.00 0.00 0.00 3.85
267 268 8.352752 TGCTACATAACATCATTTCTACGAAG 57.647 34.615 0.00 0.00 0.00 3.79
268 269 8.194769 TGCTACATAACATCATTTCTACGAAGA 58.805 33.333 0.00 0.00 0.00 2.87
269 270 8.480853 GCTACATAACATCATTTCTACGAAGAC 58.519 37.037 0.00 0.00 0.00 3.01
270 271 9.516314 CTACATAACATCATTTCTACGAAGACA 57.484 33.333 0.00 0.00 0.00 3.41
271 272 8.771920 ACATAACATCATTTCTACGAAGACAA 57.228 30.769 0.00 0.00 0.00 3.18
272 273 8.656849 ACATAACATCATTTCTACGAAGACAAC 58.343 33.333 0.00 0.00 0.00 3.32
273 274 8.655970 CATAACATCATTTCTACGAAGACAACA 58.344 33.333 0.00 0.00 0.00 3.33
274 275 7.672983 AACATCATTTCTACGAAGACAACAT 57.327 32.000 0.00 0.00 0.00 2.71
275 276 7.065216 ACATCATTTCTACGAAGACAACATG 57.935 36.000 0.00 0.00 0.00 3.21
276 277 6.873605 ACATCATTTCTACGAAGACAACATGA 59.126 34.615 0.00 0.00 0.00 3.07
277 278 7.387673 ACATCATTTCTACGAAGACAACATGAA 59.612 33.333 0.00 0.00 0.00 2.57
278 279 7.117241 TCATTTCTACGAAGACAACATGAAC 57.883 36.000 0.00 0.00 0.00 3.18
279 280 6.704050 TCATTTCTACGAAGACAACATGAACA 59.296 34.615 0.00 0.00 0.00 3.18
280 281 7.387673 TCATTTCTACGAAGACAACATGAACAT 59.612 33.333 0.00 0.00 0.00 2.71
281 282 8.655970 CATTTCTACGAAGACAACATGAACATA 58.344 33.333 0.00 0.00 0.00 2.29
282 283 8.596271 TTTCTACGAAGACAACATGAACATAA 57.404 30.769 0.00 0.00 0.00 1.90
283 284 8.596271 TTCTACGAAGACAACATGAACATAAA 57.404 30.769 0.00 0.00 0.00 1.40
284 285 8.014322 TCTACGAAGACAACATGAACATAAAC 57.986 34.615 0.00 0.00 0.00 2.01
285 286 6.861065 ACGAAGACAACATGAACATAAACT 57.139 33.333 0.00 0.00 0.00 2.66
286 287 7.956420 ACGAAGACAACATGAACATAAACTA 57.044 32.000 0.00 0.00 0.00 2.24
287 288 8.018677 ACGAAGACAACATGAACATAAACTAG 57.981 34.615 0.00 0.00 0.00 2.57
288 289 7.117812 ACGAAGACAACATGAACATAAACTAGG 59.882 37.037 0.00 0.00 0.00 3.02
289 290 7.413000 CGAAGACAACATGAACATAAACTAGGG 60.413 40.741 0.00 0.00 0.00 3.53
290 291 5.648092 AGACAACATGAACATAAACTAGGGC 59.352 40.000 0.00 0.00 0.00 5.19
291 292 5.570320 ACAACATGAACATAAACTAGGGCT 58.430 37.500 0.00 0.00 0.00 5.19
292 293 5.415701 ACAACATGAACATAAACTAGGGCTG 59.584 40.000 0.00 0.00 0.00 4.85
293 294 3.947834 ACATGAACATAAACTAGGGCTGC 59.052 43.478 0.00 0.00 0.00 5.25
294 295 4.202441 CATGAACATAAACTAGGGCTGCT 58.798 43.478 0.00 0.00 0.00 4.24
295 296 3.609853 TGAACATAAACTAGGGCTGCTG 58.390 45.455 0.00 0.00 0.00 4.41
296 297 2.044123 ACATAAACTAGGGCTGCTGC 57.956 50.000 7.10 7.10 38.76 5.25
376 377 1.101635 AGCGCACGGATCTACTAGCA 61.102 55.000 11.47 0.00 0.00 3.49
384 385 2.554893 CGGATCTACTAGCAAGTCCCTC 59.445 54.545 0.00 0.00 37.15 4.30
392 393 1.698506 AGCAAGTCCCTCGATCCTAG 58.301 55.000 0.00 0.00 0.00 3.02
394 395 1.338655 GCAAGTCCCTCGATCCTAGAC 59.661 57.143 0.00 0.00 0.00 2.59
395 396 2.656002 CAAGTCCCTCGATCCTAGACA 58.344 52.381 0.00 0.00 0.00 3.41
459 460 2.146342 CACTGAGAAAGTTCGTGGCAT 58.854 47.619 0.00 0.00 36.83 4.40
551 553 3.009363 TGAATGATCCTTTGACCTGCAGA 59.991 43.478 17.39 0.00 0.00 4.26
574 576 1.470979 CCGTCGGTCGATTTCATTCCT 60.471 52.381 2.08 0.00 42.86 3.36
620 622 9.203421 GTTGAAAACTCAAAATAAATCCCGAAT 57.797 29.630 0.00 0.00 45.32 3.34
703 714 4.528039 CCGCATGGCCCCCTCAAT 62.528 66.667 0.00 0.00 0.00 2.57
704 715 3.221389 CGCATGGCCCCCTCAATG 61.221 66.667 0.00 0.00 0.00 2.82
705 716 2.042639 GCATGGCCCCCTCAATGT 60.043 61.111 0.00 0.00 0.00 2.71
706 717 1.229927 GCATGGCCCCCTCAATGTA 59.770 57.895 0.00 0.00 0.00 2.29
707 718 1.109323 GCATGGCCCCCTCAATGTAC 61.109 60.000 0.00 0.00 0.00 2.90
708 719 0.819259 CATGGCCCCCTCAATGTACG 60.819 60.000 0.00 0.00 0.00 3.67
709 720 1.279025 ATGGCCCCCTCAATGTACGT 61.279 55.000 0.00 0.00 0.00 3.57
710 721 1.451387 GGCCCCCTCAATGTACGTG 60.451 63.158 0.00 0.00 0.00 4.49
711 722 2.112815 GCCCCCTCAATGTACGTGC 61.113 63.158 0.00 0.00 0.00 5.34
712 723 1.451387 CCCCCTCAATGTACGTGCC 60.451 63.158 0.00 0.00 0.00 5.01
713 724 1.451387 CCCCTCAATGTACGTGCCC 60.451 63.158 0.00 0.00 0.00 5.36
714 725 1.451387 CCCTCAATGTACGTGCCCC 60.451 63.158 0.00 0.00 0.00 5.80
715 726 1.298340 CCTCAATGTACGTGCCCCA 59.702 57.895 0.00 0.00 0.00 4.96
716 727 0.107214 CCTCAATGTACGTGCCCCAT 60.107 55.000 0.00 0.00 0.00 4.00
717 728 1.299541 CTCAATGTACGTGCCCCATC 58.700 55.000 0.00 0.00 0.00 3.51
786 805 3.120130 CGCGATCAGTAAGTAGATCTCCC 60.120 52.174 0.00 0.00 38.75 4.30
795 814 2.290464 AGTAGATCTCCCAAGTCGTCG 58.710 52.381 0.00 0.00 0.00 5.12
808 827 1.397692 AGTCGTCGAGCTGTTACTAGC 59.602 52.381 0.00 0.00 44.01 3.42
860 880 1.390123 CTGCGTCGTGTAATTGACCTG 59.610 52.381 0.00 0.00 0.00 4.00
861 881 1.269883 TGCGTCGTGTAATTGACCTGT 60.270 47.619 0.00 0.00 0.00 4.00
862 882 2.030096 TGCGTCGTGTAATTGACCTGTA 60.030 45.455 0.00 0.00 0.00 2.74
863 883 2.597305 GCGTCGTGTAATTGACCTGTAG 59.403 50.000 0.00 0.00 0.00 2.74
864 884 2.597305 CGTCGTGTAATTGACCTGTAGC 59.403 50.000 0.00 0.00 0.00 3.58
892 916 1.917568 TCCAGTTAATTAGCCCCGGTT 59.082 47.619 0.00 0.00 0.00 4.44
918 960 4.956700 TGTGTATATATAGAGGCCAGGCTC 59.043 45.833 12.43 13.02 0.00 4.70
920 962 1.475403 TATATAGAGGCCAGGCTCGC 58.525 55.000 12.43 3.34 0.00 5.03
937 980 3.374058 GCTCGCAGCTTCCAGTTAATTAA 59.626 43.478 0.00 0.00 38.45 1.40
938 981 4.728021 GCTCGCAGCTTCCAGTTAATTAAC 60.728 45.833 18.77 18.77 38.45 2.01
940 983 3.438781 CGCAGCTTCCAGTTAATTAACCA 59.561 43.478 21.92 6.46 36.88 3.67
941 984 4.437390 CGCAGCTTCCAGTTAATTAACCAG 60.437 45.833 21.92 15.54 36.88 4.00
946 989 3.692690 TCCAGTTAATTAACCAGTGGCC 58.307 45.455 21.92 0.00 36.88 5.36
953 996 1.600023 TTAACCAGTGGCCGAGTTTG 58.400 50.000 9.78 0.00 0.00 2.93
954 997 0.887387 TAACCAGTGGCCGAGTTTGC 60.887 55.000 9.78 0.00 0.00 3.68
955 998 2.594303 CCAGTGGCCGAGTTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
956 999 2.620112 CCAGTGGCCGAGTTTGCAG 61.620 63.158 0.00 0.00 0.00 4.41
957 1000 1.597854 CAGTGGCCGAGTTTGCAGA 60.598 57.895 0.00 0.00 0.00 4.26
958 1001 1.598130 AGTGGCCGAGTTTGCAGAC 60.598 57.895 0.00 0.00 0.00 3.51
959 1002 1.598130 GTGGCCGAGTTTGCAGACT 60.598 57.895 10.09 10.09 0.00 3.24
960 1003 0.320421 GTGGCCGAGTTTGCAGACTA 60.320 55.000 10.30 0.00 0.00 2.59
961 1004 0.037326 TGGCCGAGTTTGCAGACTAG 60.037 55.000 10.30 10.19 0.00 2.57
962 1005 0.246635 GGCCGAGTTTGCAGACTAGA 59.753 55.000 17.40 0.00 0.00 2.43
963 1006 1.351153 GCCGAGTTTGCAGACTAGAC 58.649 55.000 17.40 3.69 0.00 2.59
996 1040 2.105006 AAGCTAGGTCGACGACACTA 57.895 50.000 27.77 22.50 33.68 2.74
1018 1062 1.632920 TCATGGCAATGGAGTACACCA 59.367 47.619 14.75 14.75 44.41 4.17
1121 1165 0.759959 CTGCAGATCCAGATCAGCCT 59.240 55.000 18.75 0.00 45.95 4.58
1167 1211 4.289379 CACATGCGCGCGATCCAG 62.289 66.667 37.18 19.51 0.00 3.86
1371 1415 2.731976 GCAGTCCAACTACTTCGACTTG 59.268 50.000 0.00 0.00 33.34 3.16
1554 1598 1.081774 CTGATCCCGTCGATCTCGC 60.082 63.158 10.17 0.00 46.65 5.03
1596 1640 1.433053 CCGCGTGTGTTTCTGGTTGA 61.433 55.000 4.92 0.00 0.00 3.18
1597 1641 0.042188 CGCGTGTGTTTCTGGTTGAG 60.042 55.000 0.00 0.00 0.00 3.02
1598 1642 1.014352 GCGTGTGTTTCTGGTTGAGT 58.986 50.000 0.00 0.00 0.00 3.41
1599 1643 1.268032 GCGTGTGTTTCTGGTTGAGTG 60.268 52.381 0.00 0.00 0.00 3.51
1600 1644 2.276201 CGTGTGTTTCTGGTTGAGTGA 58.724 47.619 0.00 0.00 0.00 3.41
1632 1676 4.920340 TGCCATGTTTTGCAGTTTATTACG 59.080 37.500 0.00 0.00 32.77 3.18
1633 1677 4.920927 GCCATGTTTTGCAGTTTATTACGT 59.079 37.500 0.00 0.00 0.00 3.57
1634 1678 6.087522 GCCATGTTTTGCAGTTTATTACGTA 58.912 36.000 0.00 0.00 0.00 3.57
1635 1679 6.033091 GCCATGTTTTGCAGTTTATTACGTAC 59.967 38.462 0.00 0.00 0.00 3.67
1680 1729 6.810182 AGTTATTACGACGTGCTAGTTGATTT 59.190 34.615 11.56 0.00 0.00 2.17
1681 1730 7.970061 AGTTATTACGACGTGCTAGTTGATTTA 59.030 33.333 11.56 0.00 0.00 1.40
1682 1731 5.997732 TTACGACGTGCTAGTTGATTTAC 57.002 39.130 11.56 0.00 0.00 2.01
1715 1764 8.197592 TGTTATGGTGAGAGTAAAGAGGTTAA 57.802 34.615 0.00 0.00 0.00 2.01
1716 1765 8.822805 TGTTATGGTGAGAGTAAAGAGGTTAAT 58.177 33.333 0.00 0.00 0.00 1.40
1717 1766 9.099454 GTTATGGTGAGAGTAAAGAGGTTAATG 57.901 37.037 0.00 0.00 0.00 1.90
1718 1767 5.488341 TGGTGAGAGTAAAGAGGTTAATGC 58.512 41.667 0.00 0.00 0.00 3.56
1721 1770 6.655425 GGTGAGAGTAAAGAGGTTAATGCTTT 59.345 38.462 0.00 0.00 36.06 3.51
1770 1820 6.228258 TGGTAAACTGTCATACTCTTCCAAC 58.772 40.000 4.41 0.00 0.00 3.77
1845 1895 8.682016 CACTTCGAATTTTTGTAAATCAGTCAC 58.318 33.333 0.00 0.00 32.85 3.67
1976 2027 8.606040 TCTAAATATGATCGATGTGCATTTCA 57.394 30.769 0.54 0.00 0.00 2.69
1995 2046 2.633967 TCAACTGCCCAAATTCATGCTT 59.366 40.909 0.00 0.00 0.00 3.91
2012 2063 4.686191 TGCTTTGTCCCACAATTGAAAT 57.314 36.364 13.59 0.00 38.00 2.17
2067 2118 6.150809 TGTGATTACTTGTAATCTTGCATGCA 59.849 34.615 18.46 18.46 37.36 3.96
2150 2201 0.321298 GTAGCGGCACCAAAGAGGAA 60.321 55.000 1.45 0.00 41.22 3.36
2161 2212 4.030216 ACCAAAGAGGAAAAACACCATGT 58.970 39.130 0.00 0.00 41.22 3.21
2189 2240 1.005037 AAGACGTTCAGCCATCGCA 60.005 52.632 0.00 0.00 37.52 5.10
2195 2246 1.083806 GTTCAGCCATCGCACGATCA 61.084 55.000 1.86 0.00 37.52 2.92
2199 2250 1.519234 GCCATCGCACGATCAGTCA 60.519 57.895 1.86 0.00 31.62 3.41
2280 2331 8.752766 TGGTAATAACTAACTTTCTTCGTCAG 57.247 34.615 0.00 0.00 0.00 3.51
2293 2344 3.508012 TCTTCGTCAGAGGAGAAAAGGAG 59.492 47.826 0.00 0.00 0.00 3.69
2358 2409 5.815581 TGTCTATATTGCCAACACCTTCTT 58.184 37.500 0.00 0.00 0.00 2.52
2373 2424 3.937706 ACCTTCTTTGCTGATGATCTTCG 59.062 43.478 4.32 1.27 0.00 3.79
2374 2425 4.186926 CCTTCTTTGCTGATGATCTTCGA 58.813 43.478 4.32 0.00 0.00 3.71
2375 2426 4.270566 CCTTCTTTGCTGATGATCTTCGAG 59.729 45.833 4.32 4.52 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.456142 TGAGTACATGCGTGACGAGC 60.456 55.000 14.17 0.00 0.00 5.03
5 6 1.649171 GTTGAGTACATGCGTGACGAG 59.351 52.381 14.17 0.00 0.00 4.18
6 7 1.693467 GTTGAGTACATGCGTGACGA 58.307 50.000 14.17 0.00 0.00 4.20
7 8 0.362179 CGTTGAGTACATGCGTGACG 59.638 55.000 14.17 7.06 0.00 4.35
8 9 1.649171 CTCGTTGAGTACATGCGTGAC 59.351 52.381 14.17 6.66 0.00 3.67
9 10 1.977188 CTCGTTGAGTACATGCGTGA 58.023 50.000 14.17 0.00 0.00 4.35
10 11 0.366871 GCTCGTTGAGTACATGCGTG 59.633 55.000 3.82 3.82 31.39 5.34
11 12 0.243907 AGCTCGTTGAGTACATGCGT 59.756 50.000 0.00 0.00 32.17 5.24
12 13 0.642291 CAGCTCGTTGAGTACATGCG 59.358 55.000 0.00 0.00 32.17 4.73
13 14 1.002366 CCAGCTCGTTGAGTACATGC 58.998 55.000 0.00 0.00 31.39 4.06
14 15 1.002366 GCCAGCTCGTTGAGTACATG 58.998 55.000 0.00 0.00 31.39 3.21
15 16 0.458543 CGCCAGCTCGTTGAGTACAT 60.459 55.000 0.00 0.00 31.39 2.29
16 17 1.080772 CGCCAGCTCGTTGAGTACA 60.081 57.895 0.00 0.00 31.39 2.90
17 18 1.071567 GTCGCCAGCTCGTTGAGTAC 61.072 60.000 0.00 0.00 31.39 2.73
18 19 1.211969 GTCGCCAGCTCGTTGAGTA 59.788 57.895 0.00 0.00 31.39 2.59
19 20 2.049063 GTCGCCAGCTCGTTGAGT 60.049 61.111 0.00 0.00 31.39 3.41
20 21 3.175240 CGTCGCCAGCTCGTTGAG 61.175 66.667 0.00 0.00 0.00 3.02
34 35 4.451150 TCCATGACGGCCAGCGTC 62.451 66.667 2.24 5.16 36.95 5.19
35 36 4.760047 GTCCATGACGGCCAGCGT 62.760 66.667 2.24 0.00 33.14 5.07
44 45 3.554692 CGCGGCTTCGTCCATGAC 61.555 66.667 0.00 0.00 36.07 3.06
45 46 4.812476 CCGCGGCTTCGTCCATGA 62.812 66.667 14.67 0.00 36.07 3.07
46 47 4.812476 TCCGCGGCTTCGTCCATG 62.812 66.667 23.51 0.00 36.07 3.66
47 48 3.849951 ATCCGCGGCTTCGTCCAT 61.850 61.111 23.51 2.39 36.07 3.41
48 49 4.812476 CATCCGCGGCTTCGTCCA 62.812 66.667 23.51 0.00 36.07 4.02
49 50 4.814294 ACATCCGCGGCTTCGTCC 62.814 66.667 23.51 0.00 36.07 4.79
50 51 2.799540 GAACATCCGCGGCTTCGTC 61.800 63.158 23.51 10.10 36.07 4.20
51 52 2.813908 GAACATCCGCGGCTTCGT 60.814 61.111 23.51 11.65 36.07 3.85
52 53 3.564027 GGAACATCCGCGGCTTCG 61.564 66.667 23.51 10.93 0.00 3.79
53 54 1.582610 TTTGGAACATCCGCGGCTTC 61.583 55.000 23.51 19.46 40.17 3.86
54 55 1.175983 TTTTGGAACATCCGCGGCTT 61.176 50.000 23.51 11.53 40.17 4.35
55 56 1.586154 CTTTTGGAACATCCGCGGCT 61.586 55.000 23.51 8.48 40.17 5.52
56 57 1.154035 CTTTTGGAACATCCGCGGC 60.154 57.895 23.51 5.55 40.17 6.53
57 58 0.447801 CTCTTTTGGAACATCCGCGG 59.552 55.000 22.12 22.12 40.17 6.46
58 59 0.447801 CCTCTTTTGGAACATCCGCG 59.552 55.000 0.00 0.00 40.17 6.46
59 60 1.468914 GTCCTCTTTTGGAACATCCGC 59.531 52.381 0.00 0.00 40.17 5.54
60 61 2.084546 GGTCCTCTTTTGGAACATCCG 58.915 52.381 0.00 0.00 43.10 4.18
61 62 2.225017 TGGGTCCTCTTTTGGAACATCC 60.225 50.000 0.88 0.00 45.30 3.51
62 63 2.820197 GTGGGTCCTCTTTTGGAACATC 59.180 50.000 0.88 0.00 45.30 3.06
63 64 2.176798 TGTGGGTCCTCTTTTGGAACAT 59.823 45.455 0.88 0.00 45.30 2.71
64 65 1.566703 TGTGGGTCCTCTTTTGGAACA 59.433 47.619 0.88 0.00 45.30 3.18
65 66 2.358322 TGTGGGTCCTCTTTTGGAAC 57.642 50.000 0.00 0.00 42.87 3.62
66 67 2.716424 AGATGTGGGTCCTCTTTTGGAA 59.284 45.455 0.00 0.00 37.93 3.53
67 68 2.348472 AGATGTGGGTCCTCTTTTGGA 58.652 47.619 0.00 0.00 0.00 3.53
68 69 2.887151 AGATGTGGGTCCTCTTTTGG 57.113 50.000 0.00 0.00 0.00 3.28
69 70 3.274288 GCTAGATGTGGGTCCTCTTTTG 58.726 50.000 0.00 0.00 0.00 2.44
70 71 2.093447 CGCTAGATGTGGGTCCTCTTTT 60.093 50.000 0.00 0.00 0.00 2.27
71 72 1.482593 CGCTAGATGTGGGTCCTCTTT 59.517 52.381 0.00 0.00 0.00 2.52
72 73 1.115467 CGCTAGATGTGGGTCCTCTT 58.885 55.000 0.00 0.00 0.00 2.85
73 74 0.757188 CCGCTAGATGTGGGTCCTCT 60.757 60.000 0.00 0.00 42.43 3.69
74 75 1.742768 CCGCTAGATGTGGGTCCTC 59.257 63.158 0.00 0.00 42.43 3.71
75 76 2.435693 GCCGCTAGATGTGGGTCCT 61.436 63.158 0.00 0.00 46.08 3.85
76 77 2.109181 GCCGCTAGATGTGGGTCC 59.891 66.667 0.00 0.00 46.08 4.46
77 78 2.109181 GGCCGCTAGATGTGGGTC 59.891 66.667 0.00 0.00 46.08 4.46
78 79 2.687200 TGGCCGCTAGATGTGGGT 60.687 61.111 0.00 0.00 46.08 4.51
79 80 2.109799 CTGGCCGCTAGATGTGGG 59.890 66.667 0.00 0.00 46.08 4.61
81 82 0.807667 GTGACTGGCCGCTAGATGTG 60.808 60.000 11.19 0.00 0.00 3.21
82 83 1.517832 GTGACTGGCCGCTAGATGT 59.482 57.895 11.19 0.00 0.00 3.06
83 84 1.589993 CGTGACTGGCCGCTAGATG 60.590 63.158 11.19 0.00 0.00 2.90
84 85 1.605058 AACGTGACTGGCCGCTAGAT 61.605 55.000 11.19 0.00 0.00 1.98
85 86 1.812686 AAACGTGACTGGCCGCTAGA 61.813 55.000 11.19 0.00 0.00 2.43
86 87 1.374252 AAACGTGACTGGCCGCTAG 60.374 57.895 1.54 1.54 0.00 3.42
87 88 1.666553 CAAACGTGACTGGCCGCTA 60.667 57.895 0.00 0.00 0.00 4.26
88 89 2.972505 CAAACGTGACTGGCCGCT 60.973 61.111 0.00 0.00 0.00 5.52
89 90 4.683334 GCAAACGTGACTGGCCGC 62.683 66.667 0.00 0.00 0.00 6.53
90 91 3.240606 CTGCAAACGTGACTGGCCG 62.241 63.158 0.00 0.00 0.00 6.13
91 92 1.237285 ATCTGCAAACGTGACTGGCC 61.237 55.000 0.00 0.00 0.00 5.36
92 93 0.110056 CATCTGCAAACGTGACTGGC 60.110 55.000 0.00 0.00 0.00 4.85
93 94 1.229428 ACATCTGCAAACGTGACTGG 58.771 50.000 0.00 0.00 0.00 4.00
94 95 3.038017 CAAACATCTGCAAACGTGACTG 58.962 45.455 0.00 0.00 0.00 3.51
95 96 2.942376 TCAAACATCTGCAAACGTGACT 59.058 40.909 0.00 0.00 0.00 3.41
96 97 3.291585 CTCAAACATCTGCAAACGTGAC 58.708 45.455 0.00 0.00 0.00 3.67
97 98 2.290367 CCTCAAACATCTGCAAACGTGA 59.710 45.455 0.00 0.00 0.00 4.35
98 99 2.605338 CCCTCAAACATCTGCAAACGTG 60.605 50.000 0.00 0.00 0.00 4.49
99 100 1.608590 CCCTCAAACATCTGCAAACGT 59.391 47.619 0.00 0.00 0.00 3.99
100 101 1.068333 CCCCTCAAACATCTGCAAACG 60.068 52.381 0.00 0.00 0.00 3.60
101 102 1.963515 ACCCCTCAAACATCTGCAAAC 59.036 47.619 0.00 0.00 0.00 2.93
102 103 2.238521 GACCCCTCAAACATCTGCAAA 58.761 47.619 0.00 0.00 0.00 3.68
103 104 1.881925 CGACCCCTCAAACATCTGCAA 60.882 52.381 0.00 0.00 0.00 4.08
104 105 0.321564 CGACCCCTCAAACATCTGCA 60.322 55.000 0.00 0.00 0.00 4.41
105 106 0.036388 TCGACCCCTCAAACATCTGC 60.036 55.000 0.00 0.00 0.00 4.26
106 107 2.472695 TTCGACCCCTCAAACATCTG 57.527 50.000 0.00 0.00 0.00 2.90
107 108 3.721087 AATTCGACCCCTCAAACATCT 57.279 42.857 0.00 0.00 0.00 2.90
108 109 3.673323 GCAAATTCGACCCCTCAAACATC 60.673 47.826 0.00 0.00 0.00 3.06
109 110 2.231235 GCAAATTCGACCCCTCAAACAT 59.769 45.455 0.00 0.00 0.00 2.71
110 111 1.611491 GCAAATTCGACCCCTCAAACA 59.389 47.619 0.00 0.00 0.00 2.83
111 112 1.886542 AGCAAATTCGACCCCTCAAAC 59.113 47.619 0.00 0.00 0.00 2.93
112 113 2.286365 AGCAAATTCGACCCCTCAAA 57.714 45.000 0.00 0.00 0.00 2.69
113 114 3.244770 ACTTAGCAAATTCGACCCCTCAA 60.245 43.478 0.00 0.00 0.00 3.02
114 115 2.304761 ACTTAGCAAATTCGACCCCTCA 59.695 45.455 0.00 0.00 0.00 3.86
115 116 2.937149 GACTTAGCAAATTCGACCCCTC 59.063 50.000 0.00 0.00 0.00 4.30
116 117 2.355818 GGACTTAGCAAATTCGACCCCT 60.356 50.000 0.00 0.00 0.00 4.79
117 118 2.014857 GGACTTAGCAAATTCGACCCC 58.985 52.381 0.00 0.00 0.00 4.95
118 119 2.014857 GGGACTTAGCAAATTCGACCC 58.985 52.381 0.00 0.00 0.00 4.46
119 120 2.418976 GTGGGACTTAGCAAATTCGACC 59.581 50.000 0.00 0.00 0.00 4.79
120 121 2.418976 GGTGGGACTTAGCAAATTCGAC 59.581 50.000 0.00 0.00 0.00 4.20
121 122 2.706890 GGTGGGACTTAGCAAATTCGA 58.293 47.619 0.00 0.00 0.00 3.71
122 123 1.396996 CGGTGGGACTTAGCAAATTCG 59.603 52.381 0.00 0.00 0.00 3.34
123 124 2.433436 ACGGTGGGACTTAGCAAATTC 58.567 47.619 0.00 0.00 0.00 2.17
124 125 2.579410 ACGGTGGGACTTAGCAAATT 57.421 45.000 0.00 0.00 0.00 1.82
125 126 2.835764 TCTACGGTGGGACTTAGCAAAT 59.164 45.455 0.00 0.00 0.00 2.32
126 127 2.250031 TCTACGGTGGGACTTAGCAAA 58.750 47.619 0.00 0.00 0.00 3.68
127 128 1.927487 TCTACGGTGGGACTTAGCAA 58.073 50.000 0.00 0.00 0.00 3.91
128 129 1.754803 CATCTACGGTGGGACTTAGCA 59.245 52.381 0.00 0.00 0.00 3.49
129 130 1.538419 GCATCTACGGTGGGACTTAGC 60.538 57.143 0.00 0.00 0.00 3.09
130 131 2.032620 AGCATCTACGGTGGGACTTAG 58.967 52.381 0.00 0.00 0.00 2.18
131 132 2.029623 GAGCATCTACGGTGGGACTTA 58.970 52.381 0.00 0.00 0.00 2.24
132 133 0.824759 GAGCATCTACGGTGGGACTT 59.175 55.000 0.00 0.00 0.00 3.01
133 134 2.506065 GAGCATCTACGGTGGGACT 58.494 57.895 0.00 0.00 0.00 3.85
159 160 4.518278 ACCCCTTTTTGCTCCAATTTTT 57.482 36.364 0.00 0.00 0.00 1.94
160 161 4.518278 AACCCCTTTTTGCTCCAATTTT 57.482 36.364 0.00 0.00 0.00 1.82
161 162 4.460263 GAAACCCCTTTTTGCTCCAATTT 58.540 39.130 0.00 0.00 0.00 1.82
162 163 3.181445 GGAAACCCCTTTTTGCTCCAATT 60.181 43.478 0.00 0.00 0.00 2.32
163 164 2.371841 GGAAACCCCTTTTTGCTCCAAT 59.628 45.455 0.00 0.00 0.00 3.16
164 165 1.765904 GGAAACCCCTTTTTGCTCCAA 59.234 47.619 0.00 0.00 0.00 3.53
165 166 1.419381 GGAAACCCCTTTTTGCTCCA 58.581 50.000 0.00 0.00 0.00 3.86
179 180 2.437085 ATGGAAATCGGAGGGGAAAC 57.563 50.000 0.00 0.00 0.00 2.78
180 181 4.806952 ATAATGGAAATCGGAGGGGAAA 57.193 40.909 0.00 0.00 0.00 3.13
181 182 5.159637 TCTATAATGGAAATCGGAGGGGAA 58.840 41.667 0.00 0.00 0.00 3.97
182 183 4.758822 TCTATAATGGAAATCGGAGGGGA 58.241 43.478 0.00 0.00 0.00 4.81
183 184 5.499004 TTCTATAATGGAAATCGGAGGGG 57.501 43.478 0.00 0.00 0.00 4.79
184 185 5.705905 GGTTTCTATAATGGAAATCGGAGGG 59.294 44.000 0.00 0.00 35.55 4.30
185 186 6.296026 TGGTTTCTATAATGGAAATCGGAGG 58.704 40.000 0.00 0.00 36.81 4.30
186 187 7.661437 TGATGGTTTCTATAATGGAAATCGGAG 59.339 37.037 0.00 0.00 36.81 4.63
187 188 7.513856 TGATGGTTTCTATAATGGAAATCGGA 58.486 34.615 0.00 0.00 36.81 4.55
188 189 7.744087 TGATGGTTTCTATAATGGAAATCGG 57.256 36.000 0.00 0.00 36.81 4.18
189 190 7.805071 GCTTGATGGTTTCTATAATGGAAATCG 59.195 37.037 0.00 0.00 36.81 3.34
190 191 8.632679 TGCTTGATGGTTTCTATAATGGAAATC 58.367 33.333 0.00 0.00 35.55 2.17
191 192 8.537728 TGCTTGATGGTTTCTATAATGGAAAT 57.462 30.769 0.00 0.00 35.55 2.17
192 193 7.953005 TGCTTGATGGTTTCTATAATGGAAA 57.047 32.000 0.00 0.00 0.00 3.13
193 194 7.231317 GGATGCTTGATGGTTTCTATAATGGAA 59.769 37.037 0.00 0.00 0.00 3.53
194 195 6.716628 GGATGCTTGATGGTTTCTATAATGGA 59.283 38.462 0.00 0.00 0.00 3.41
195 196 6.348786 CGGATGCTTGATGGTTTCTATAATGG 60.349 42.308 0.00 0.00 0.00 3.16
196 197 6.427853 TCGGATGCTTGATGGTTTCTATAATG 59.572 38.462 0.00 0.00 0.00 1.90
197 198 6.428159 GTCGGATGCTTGATGGTTTCTATAAT 59.572 38.462 0.00 0.00 0.00 1.28
198 199 5.758296 GTCGGATGCTTGATGGTTTCTATAA 59.242 40.000 0.00 0.00 0.00 0.98
199 200 5.163353 TGTCGGATGCTTGATGGTTTCTATA 60.163 40.000 0.00 0.00 0.00 1.31
200 201 4.130118 GTCGGATGCTTGATGGTTTCTAT 58.870 43.478 0.00 0.00 0.00 1.98
201 202 3.055458 TGTCGGATGCTTGATGGTTTCTA 60.055 43.478 0.00 0.00 0.00 2.10
202 203 2.290260 TGTCGGATGCTTGATGGTTTCT 60.290 45.455 0.00 0.00 0.00 2.52
203 204 2.083774 TGTCGGATGCTTGATGGTTTC 58.916 47.619 0.00 0.00 0.00 2.78
204 205 2.086869 CTGTCGGATGCTTGATGGTTT 58.913 47.619 0.00 0.00 0.00 3.27
205 206 1.003580 ACTGTCGGATGCTTGATGGTT 59.996 47.619 0.00 0.00 0.00 3.67
206 207 0.615331 ACTGTCGGATGCTTGATGGT 59.385 50.000 0.00 0.00 0.00 3.55
207 208 1.293924 GACTGTCGGATGCTTGATGG 58.706 55.000 0.00 0.00 0.00 3.51
208 209 1.662629 GTGACTGTCGGATGCTTGATG 59.337 52.381 2.98 0.00 0.00 3.07
209 210 1.276138 TGTGACTGTCGGATGCTTGAT 59.724 47.619 2.98 0.00 0.00 2.57
210 211 0.678950 TGTGACTGTCGGATGCTTGA 59.321 50.000 2.98 0.00 0.00 3.02
211 212 1.073964 CTGTGACTGTCGGATGCTTG 58.926 55.000 2.98 0.00 0.00 4.01
212 213 0.681733 ACTGTGACTGTCGGATGCTT 59.318 50.000 2.98 0.00 0.00 3.91
213 214 0.037882 CACTGTGACTGTCGGATGCT 60.038 55.000 0.32 0.00 0.00 3.79
214 215 0.319900 ACACTGTGACTGTCGGATGC 60.320 55.000 15.86 0.00 0.00 3.91
215 216 2.154854 AACACTGTGACTGTCGGATG 57.845 50.000 15.86 1.94 0.00 3.51
216 217 2.910688 AAACACTGTGACTGTCGGAT 57.089 45.000 15.86 0.00 0.00 4.18
217 218 2.684001 AAAACACTGTGACTGTCGGA 57.316 45.000 15.86 0.00 0.00 4.55
218 219 4.495184 GGTTTAAAACACTGTGACTGTCGG 60.495 45.833 15.86 0.00 0.00 4.79
219 220 4.331717 AGGTTTAAAACACTGTGACTGTCG 59.668 41.667 15.86 0.00 0.00 4.35
220 221 5.569413 CAGGTTTAAAACACTGTGACTGTC 58.431 41.667 15.86 0.00 0.00 3.51
221 222 4.142469 GCAGGTTTAAAACACTGTGACTGT 60.142 41.667 15.86 0.00 34.34 3.55
222 223 4.096382 AGCAGGTTTAAAACACTGTGACTG 59.904 41.667 15.86 9.61 34.34 3.51
223 224 4.270008 AGCAGGTTTAAAACACTGTGACT 58.730 39.130 15.86 0.00 34.34 3.41
224 225 4.632538 AGCAGGTTTAAAACACTGTGAC 57.367 40.909 15.86 0.42 34.34 3.67
225 226 5.186942 TGTAGCAGGTTTAAAACACTGTGA 58.813 37.500 15.86 0.00 34.34 3.58
226 227 5.493133 TGTAGCAGGTTTAAAACACTGTG 57.507 39.130 5.94 6.19 34.34 3.66
227 228 7.283580 TGTTATGTAGCAGGTTTAAAACACTGT 59.716 33.333 5.94 2.33 34.34 3.55
228 229 7.644490 TGTTATGTAGCAGGTTTAAAACACTG 58.356 34.615 5.94 8.46 34.70 3.66
229 230 7.811117 TGTTATGTAGCAGGTTTAAAACACT 57.189 32.000 5.94 5.09 0.00 3.55
230 231 8.293867 TGATGTTATGTAGCAGGTTTAAAACAC 58.706 33.333 5.94 0.00 0.00 3.32
231 232 8.397575 TGATGTTATGTAGCAGGTTTAAAACA 57.602 30.769 5.94 0.00 0.00 2.83
232 233 9.855021 AATGATGTTATGTAGCAGGTTTAAAAC 57.145 29.630 0.00 0.00 0.00 2.43
235 236 9.461312 AGAAATGATGTTATGTAGCAGGTTTAA 57.539 29.630 0.00 0.00 0.00 1.52
237 238 7.944729 AGAAATGATGTTATGTAGCAGGTTT 57.055 32.000 0.00 0.00 0.00 3.27
238 239 7.224753 CGTAGAAATGATGTTATGTAGCAGGTT 59.775 37.037 0.00 0.00 0.00 3.50
239 240 6.701841 CGTAGAAATGATGTTATGTAGCAGGT 59.298 38.462 0.00 0.00 0.00 4.00
240 241 6.923508 TCGTAGAAATGATGTTATGTAGCAGG 59.076 38.462 0.00 0.00 0.00 4.85
241 242 7.930513 TCGTAGAAATGATGTTATGTAGCAG 57.069 36.000 0.00 0.00 0.00 4.24
242 243 8.194769 TCTTCGTAGAAATGATGTTATGTAGCA 58.805 33.333 0.00 0.00 45.90 3.49
243 244 8.480853 GTCTTCGTAGAAATGATGTTATGTAGC 58.519 37.037 0.00 0.00 45.90 3.58
244 245 9.516314 TGTCTTCGTAGAAATGATGTTATGTAG 57.484 33.333 0.00 0.00 45.90 2.74
245 246 9.863845 TTGTCTTCGTAGAAATGATGTTATGTA 57.136 29.630 0.00 0.00 45.90 2.29
246 247 8.656849 GTTGTCTTCGTAGAAATGATGTTATGT 58.343 33.333 0.00 0.00 45.90 2.29
247 248 8.655970 TGTTGTCTTCGTAGAAATGATGTTATG 58.344 33.333 0.00 0.00 45.90 1.90
248 249 8.771920 TGTTGTCTTCGTAGAAATGATGTTAT 57.228 30.769 0.00 0.00 45.90 1.89
249 250 8.655970 CATGTTGTCTTCGTAGAAATGATGTTA 58.344 33.333 0.00 0.00 45.90 2.41
250 251 7.387673 TCATGTTGTCTTCGTAGAAATGATGTT 59.612 33.333 0.00 0.00 45.90 2.71
251 252 6.873605 TCATGTTGTCTTCGTAGAAATGATGT 59.126 34.615 0.00 0.00 45.90 3.06
252 253 7.294676 TCATGTTGTCTTCGTAGAAATGATG 57.705 36.000 0.00 0.00 45.90 3.07
253 254 7.387673 TGTTCATGTTGTCTTCGTAGAAATGAT 59.612 33.333 0.00 0.00 45.90 2.45
254 255 6.704050 TGTTCATGTTGTCTTCGTAGAAATGA 59.296 34.615 0.00 0.00 45.90 2.57
255 256 6.887368 TGTTCATGTTGTCTTCGTAGAAATG 58.113 36.000 0.00 0.00 45.90 2.32
256 257 7.672983 ATGTTCATGTTGTCTTCGTAGAAAT 57.327 32.000 0.00 0.00 45.90 2.17
257 258 8.596271 TTATGTTCATGTTGTCTTCGTAGAAA 57.404 30.769 0.00 0.00 45.90 2.52
258 259 8.492748 GTTTATGTTCATGTTGTCTTCGTAGAA 58.507 33.333 0.00 0.00 45.90 2.10
259 260 7.870954 AGTTTATGTTCATGTTGTCTTCGTAGA 59.129 33.333 0.00 0.00 0.00 2.59
260 261 8.018677 AGTTTATGTTCATGTTGTCTTCGTAG 57.981 34.615 0.00 0.00 0.00 3.51
261 262 7.956420 AGTTTATGTTCATGTTGTCTTCGTA 57.044 32.000 0.00 0.00 0.00 3.43
262 263 6.861065 AGTTTATGTTCATGTTGTCTTCGT 57.139 33.333 0.00 0.00 0.00 3.85
263 264 7.413000 CCCTAGTTTATGTTCATGTTGTCTTCG 60.413 40.741 0.00 0.00 0.00 3.79
264 265 7.626452 GCCCTAGTTTATGTTCATGTTGTCTTC 60.626 40.741 0.00 0.00 0.00 2.87
265 266 6.151144 GCCCTAGTTTATGTTCATGTTGTCTT 59.849 38.462 0.00 0.00 0.00 3.01
266 267 5.648092 GCCCTAGTTTATGTTCATGTTGTCT 59.352 40.000 0.00 0.00 0.00 3.41
267 268 5.648092 AGCCCTAGTTTATGTTCATGTTGTC 59.352 40.000 0.00 0.00 0.00 3.18
268 269 5.415701 CAGCCCTAGTTTATGTTCATGTTGT 59.584 40.000 0.00 0.00 0.00 3.32
269 270 5.677091 GCAGCCCTAGTTTATGTTCATGTTG 60.677 44.000 0.00 0.00 0.00 3.33
270 271 4.399303 GCAGCCCTAGTTTATGTTCATGTT 59.601 41.667 0.00 0.00 0.00 2.71
271 272 3.947834 GCAGCCCTAGTTTATGTTCATGT 59.052 43.478 0.00 0.00 0.00 3.21
272 273 4.036027 CAGCAGCCCTAGTTTATGTTCATG 59.964 45.833 0.00 0.00 0.00 3.07
273 274 4.202441 CAGCAGCCCTAGTTTATGTTCAT 58.798 43.478 0.00 0.00 0.00 2.57
274 275 3.609853 CAGCAGCCCTAGTTTATGTTCA 58.390 45.455 0.00 0.00 0.00 3.18
275 276 2.356069 GCAGCAGCCCTAGTTTATGTTC 59.644 50.000 0.00 0.00 33.58 3.18
276 277 2.369394 GCAGCAGCCCTAGTTTATGTT 58.631 47.619 0.00 0.00 33.58 2.71
277 278 2.044123 GCAGCAGCCCTAGTTTATGT 57.956 50.000 0.00 0.00 33.58 2.29
300 301 6.202954 ACTTCGGTATTATTAGAGCATGTTGC 59.797 38.462 0.00 0.00 45.46 4.17
301 302 7.715265 ACTTCGGTATTATTAGAGCATGTTG 57.285 36.000 0.00 0.00 0.00 3.33
302 303 8.857098 TCTACTTCGGTATTATTAGAGCATGTT 58.143 33.333 0.00 0.00 0.00 2.71
303 304 8.405418 TCTACTTCGGTATTATTAGAGCATGT 57.595 34.615 0.00 0.00 0.00 3.21
304 305 7.486551 GCTCTACTTCGGTATTATTAGAGCATG 59.513 40.741 18.90 0.00 39.21 4.06
305 306 7.176865 TGCTCTACTTCGGTATTATTAGAGCAT 59.823 37.037 21.42 0.00 41.68 3.79
306 307 6.489022 TGCTCTACTTCGGTATTATTAGAGCA 59.511 38.462 21.42 21.42 42.95 4.26
307 308 6.910995 TGCTCTACTTCGGTATTATTAGAGC 58.089 40.000 17.58 17.58 39.53 4.09
308 309 9.182933 GTTTGCTCTACTTCGGTATTATTAGAG 57.817 37.037 0.00 0.00 0.00 2.43
309 310 7.859377 CGTTTGCTCTACTTCGGTATTATTAGA 59.141 37.037 0.00 0.00 0.00 2.10
310 311 7.859377 TCGTTTGCTCTACTTCGGTATTATTAG 59.141 37.037 0.00 0.00 0.00 1.73
311 312 7.706159 TCGTTTGCTCTACTTCGGTATTATTA 58.294 34.615 0.00 0.00 0.00 0.98
312 313 6.567050 TCGTTTGCTCTACTTCGGTATTATT 58.433 36.000 0.00 0.00 0.00 1.40
313 314 6.140303 TCGTTTGCTCTACTTCGGTATTAT 57.860 37.500 0.00 0.00 0.00 1.28
314 315 5.565592 TCGTTTGCTCTACTTCGGTATTA 57.434 39.130 0.00 0.00 0.00 0.98
315 316 4.445452 TCGTTTGCTCTACTTCGGTATT 57.555 40.909 0.00 0.00 0.00 1.89
316 317 4.171754 GTTCGTTTGCTCTACTTCGGTAT 58.828 43.478 0.00 0.00 0.00 2.73
317 318 3.568538 GTTCGTTTGCTCTACTTCGGTA 58.431 45.455 0.00 0.00 0.00 4.02
318 319 2.401351 GTTCGTTTGCTCTACTTCGGT 58.599 47.619 0.00 0.00 0.00 4.69
319 320 1.725164 GGTTCGTTTGCTCTACTTCGG 59.275 52.381 0.00 0.00 0.00 4.30
320 321 1.725164 GGGTTCGTTTGCTCTACTTCG 59.275 52.381 0.00 0.00 0.00 3.79
321 322 3.041508 AGGGTTCGTTTGCTCTACTTC 57.958 47.619 0.00 0.00 0.00 3.01
322 323 3.139077 CAAGGGTTCGTTTGCTCTACTT 58.861 45.455 0.00 0.00 0.00 2.24
376 377 2.242708 ACTGTCTAGGATCGAGGGACTT 59.757 50.000 0.00 0.00 41.55 3.01
384 385 0.671251 GAGGCCACTGTCTAGGATCG 59.329 60.000 5.01 0.00 0.00 3.69
459 460 1.823648 GCCACATCTAGGATCGAGGGA 60.824 57.143 0.00 0.00 0.00 4.20
507 508 0.678395 CACTCGGGATGGAGATGGAG 59.322 60.000 0.00 0.00 37.49 3.86
508 509 0.261696 TCACTCGGGATGGAGATGGA 59.738 55.000 0.00 0.00 37.49 3.41
509 510 1.123077 TTCACTCGGGATGGAGATGG 58.877 55.000 0.00 0.00 37.49 3.51
510 511 2.366590 TCATTCACTCGGGATGGAGATG 59.633 50.000 0.00 0.00 37.49 2.90
511 512 2.682594 TCATTCACTCGGGATGGAGAT 58.317 47.619 0.00 0.00 37.49 2.75
512 513 2.159179 TCATTCACTCGGGATGGAGA 57.841 50.000 0.00 0.00 37.49 3.71
551 553 0.245539 ATGAAATCGACCGACGGTGT 59.754 50.000 27.26 7.34 42.82 4.16
574 576 3.682696 ACAGGTCAGTACGTACATCTGA 58.317 45.455 25.08 18.59 36.12 3.27
603 605 7.201574 CGTACTCACATTCGGGATTTATTTTGA 60.202 37.037 0.00 0.00 0.00 2.69
609 611 4.724074 ACGTACTCACATTCGGGATTTA 57.276 40.909 0.00 0.00 0.00 1.40
620 622 1.335597 GCAGCAGTGTACGTACTCACA 60.336 52.381 25.12 6.01 37.07 3.58
701 712 0.326595 TGTGATGGGGCACGTACATT 59.673 50.000 0.00 0.00 41.63 2.71
702 713 0.546122 ATGTGATGGGGCACGTACAT 59.454 50.000 0.00 0.00 41.63 2.29
703 714 0.392327 CATGTGATGGGGCACGTACA 60.392 55.000 0.00 0.00 41.63 2.90
704 715 0.107897 TCATGTGATGGGGCACGTAC 60.108 55.000 0.00 0.00 41.63 3.67
705 716 0.615850 TTCATGTGATGGGGCACGTA 59.384 50.000 0.00 0.00 41.63 3.57
706 717 0.251121 TTTCATGTGATGGGGCACGT 60.251 50.000 0.00 0.00 41.63 4.49
707 718 1.105457 ATTTCATGTGATGGGGCACG 58.895 50.000 0.00 0.00 41.63 5.34
708 719 2.101783 TCATTTCATGTGATGGGGCAC 58.898 47.619 9.91 0.00 39.22 5.01
709 720 2.528673 TCATTTCATGTGATGGGGCA 57.471 45.000 9.91 0.00 0.00 5.36
710 721 3.243975 GGAATCATTTCATGTGATGGGGC 60.244 47.826 9.91 0.00 36.49 5.80
711 722 3.962063 TGGAATCATTTCATGTGATGGGG 59.038 43.478 9.91 0.00 36.49 4.96
712 723 5.779922 GATGGAATCATTTCATGTGATGGG 58.220 41.667 0.00 0.00 44.70 4.00
732 743 1.547820 AGATCGATCGACCCATGGATG 59.452 52.381 22.06 0.00 0.00 3.51
786 805 2.333389 AGTAACAGCTCGACGACTTG 57.667 50.000 0.00 0.00 0.00 3.16
842 862 1.425412 ACAGGTCAATTACACGACGC 58.575 50.000 0.00 0.00 32.74 5.19
860 880 6.479331 GCTAATTAACTGGAACCTACAGCTAC 59.521 42.308 0.00 0.00 39.55 3.58
861 881 6.407752 GGCTAATTAACTGGAACCTACAGCTA 60.408 42.308 0.00 0.00 39.55 3.32
862 882 5.429130 GCTAATTAACTGGAACCTACAGCT 58.571 41.667 0.00 0.00 39.55 4.24
863 883 4.575236 GGCTAATTAACTGGAACCTACAGC 59.425 45.833 0.00 0.00 39.55 4.40
864 884 5.123936 GGGCTAATTAACTGGAACCTACAG 58.876 45.833 0.00 0.00 41.64 2.74
892 916 5.363868 GCCTGGCCTCTATATATACACATCA 59.636 44.000 7.66 0.00 0.00 3.07
918 960 3.438781 TGGTTAATTAACTGGAAGCTGCG 59.561 43.478 23.89 0.00 37.60 5.18
920 962 5.106157 CCACTGGTTAATTAACTGGAAGCTG 60.106 44.000 23.89 13.89 37.60 4.24
937 980 2.594592 GCAAACTCGGCCACTGGT 60.595 61.111 2.24 0.00 0.00 4.00
938 981 2.594303 TGCAAACTCGGCCACTGG 60.594 61.111 2.24 0.00 0.00 4.00
940 983 1.598130 GTCTGCAAACTCGGCCACT 60.598 57.895 2.24 0.00 0.00 4.00
941 984 0.320421 TAGTCTGCAAACTCGGCCAC 60.320 55.000 2.24 0.00 0.00 5.01
946 989 3.238441 GTCTGTCTAGTCTGCAAACTCG 58.762 50.000 0.00 0.00 0.00 4.18
953 996 4.819630 AGCTATACTGTCTGTCTAGTCTGC 59.180 45.833 0.00 0.00 30.71 4.26
954 997 7.307751 GCTTAGCTATACTGTCTGTCTAGTCTG 60.308 44.444 0.00 0.00 30.71 3.51
955 998 6.708949 GCTTAGCTATACTGTCTGTCTAGTCT 59.291 42.308 0.00 5.13 30.71 3.24
956 999 6.708949 AGCTTAGCTATACTGTCTGTCTAGTC 59.291 42.308 4.30 0.00 36.99 2.59
957 1000 6.597562 AGCTTAGCTATACTGTCTGTCTAGT 58.402 40.000 4.30 0.00 36.99 2.57
958 1001 7.333423 CCTAGCTTAGCTATACTGTCTGTCTAG 59.667 44.444 14.78 0.00 40.54 2.43
959 1002 7.162761 CCTAGCTTAGCTATACTGTCTGTCTA 58.837 42.308 14.78 0.00 40.54 2.59
960 1003 6.001460 CCTAGCTTAGCTATACTGTCTGTCT 58.999 44.000 14.78 0.00 40.54 3.41
961 1004 5.766174 ACCTAGCTTAGCTATACTGTCTGTC 59.234 44.000 14.78 0.00 40.54 3.51
962 1005 5.697067 ACCTAGCTTAGCTATACTGTCTGT 58.303 41.667 14.78 0.35 40.54 3.41
963 1006 5.106869 CGACCTAGCTTAGCTATACTGTCTG 60.107 48.000 14.78 10.73 40.54 3.51
996 1040 2.356125 GGTGTACTCCATTGCCATGACT 60.356 50.000 9.12 0.00 31.07 3.41
1044 1088 2.279120 GAGAGCAGGACGATGGCG 60.279 66.667 0.00 0.00 44.79 5.69
1092 1136 1.449246 GATCTGCAGCAGCTTCCGT 60.449 57.895 18.43 0.00 42.74 4.69
1596 1640 1.070758 ACATGGCAAGACGACTTCACT 59.929 47.619 0.00 0.00 33.70 3.41
1597 1641 1.512926 ACATGGCAAGACGACTTCAC 58.487 50.000 0.00 0.00 33.70 3.18
1598 1642 2.254546 AACATGGCAAGACGACTTCA 57.745 45.000 0.00 0.00 33.70 3.02
1599 1643 3.300009 CAAAACATGGCAAGACGACTTC 58.700 45.455 0.00 0.00 33.70 3.01
1600 1644 2.543653 GCAAAACATGGCAAGACGACTT 60.544 45.455 0.00 0.00 36.73 3.01
1680 1729 7.898014 ACTCTCACCATAACATGATGTAGTA 57.102 36.000 0.00 0.00 0.00 1.82
1681 1730 6.798427 ACTCTCACCATAACATGATGTAGT 57.202 37.500 0.00 0.00 0.00 2.73
1682 1731 9.254133 CTTTACTCTCACCATAACATGATGTAG 57.746 37.037 0.00 0.00 0.00 2.74
1715 1764 4.053295 GCACAAAACTCATGACAAAGCAT 58.947 39.130 0.00 0.00 0.00 3.79
1716 1765 3.119209 TGCACAAAACTCATGACAAAGCA 60.119 39.130 0.00 0.00 0.00 3.91
1717 1766 3.446799 TGCACAAAACTCATGACAAAGC 58.553 40.909 0.00 0.00 0.00 3.51
1718 1767 5.283294 TCATGCACAAAACTCATGACAAAG 58.717 37.500 0.00 0.00 40.91 2.77
1809 1859 5.941948 AAAATTCGAAGTGACCGAGAATT 57.058 34.783 3.35 4.63 41.53 2.17
1845 1895 6.377327 AACTTGTCACTGTGGAGTTTATTG 57.623 37.500 8.11 0.00 0.00 1.90
1908 1959 8.710835 TTTGCATGATACGTACTAAGATTTCA 57.289 30.769 0.00 0.00 0.00 2.69
1976 2027 3.181452 ACAAAGCATGAATTTGGGCAGTT 60.181 39.130 21.05 3.80 41.05 3.16
1995 2046 4.339530 TCAACGATTTCAATTGTGGGACAA 59.660 37.500 5.13 0.00 44.16 3.18
2012 2063 8.737168 AGAGATTTCCAATATGAATTCAACGA 57.263 30.769 13.09 1.25 30.64 3.85
2028 2079 8.787852 ACAAGTAATCACAAGAAAGAGATTTCC 58.212 33.333 0.00 0.00 32.39 3.13
2111 2162 1.209128 GAGCACGAATCCCACATACG 58.791 55.000 0.00 0.00 0.00 3.06
2150 2201 3.283751 TCACTTTCGGACATGGTGTTTT 58.716 40.909 0.00 0.00 0.00 2.43
2161 2212 2.739292 CTGAACGTCTTCACTTTCGGA 58.261 47.619 0.00 0.00 38.77 4.55
2278 2329 1.349026 TGCACCTCCTTTTCTCCTCTG 59.651 52.381 0.00 0.00 0.00 3.35
2280 2331 2.568623 TTGCACCTCCTTTTCTCCTC 57.431 50.000 0.00 0.00 0.00 3.71
2358 2409 4.428209 GAAGACTCGAAGATCATCAGCAA 58.572 43.478 0.00 0.00 33.89 3.91
2373 2424 6.309389 TGTTAATAAAGGGGAGGAAGACTC 57.691 41.667 0.00 0.00 45.84 3.36
2374 2425 6.910259 ATGTTAATAAAGGGGAGGAAGACT 57.090 37.500 0.00 0.00 0.00 3.24
2375 2426 8.050930 TGTAATGTTAATAAAGGGGAGGAAGAC 58.949 37.037 0.00 0.00 0.00 3.01
2458 2514 8.610896 GTTTGAATTGGTTGATGATTTGAAACA 58.389 29.630 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.