Multiple sequence alignment - TraesCS6A01G345800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G345800 chr6A 100.000 2684 0 0 1 2684 579137174 579139857 0.000000e+00 4957.0
1 TraesCS6A01G345800 chr6A 92.424 66 4 1 2122 2187 579122792 579122856 2.850000e-15 93.5
2 TraesCS6A01G345800 chr3A 95.925 2037 66 5 1 2030 1908675 1906649 0.000000e+00 3286.0
3 TraesCS6A01G345800 chr2A 95.479 2035 79 8 1 2027 202073312 202075341 0.000000e+00 3236.0
4 TraesCS6A01G345800 chr2A 94.908 2003 65 5 1 1978 35939796 35937806 0.000000e+00 3099.0
5 TraesCS6A01G345800 chr2A 93.606 2033 69 16 1 2027 695289873 695287896 0.000000e+00 2977.0
6 TraesCS6A01G345800 chr2A 92.992 1912 94 10 1 1897 703351121 703353007 0.000000e+00 2752.0
7 TraesCS6A01G345800 chr5A 94.869 1949 86 7 1 1941 35644879 35642937 0.000000e+00 3033.0
8 TraesCS6A01G345800 chr5A 94.093 1913 93 10 1 1897 650676334 650678242 0.000000e+00 2889.0
9 TraesCS6A01G345800 chr5A 95.062 324 10 3 2362 2684 461734612 461734930 3.080000e-139 505.0
10 TraesCS6A01G345800 chr7A 93.924 2008 79 15 1 1997 662137561 662139536 0.000000e+00 2992.0
11 TraesCS6A01G345800 chr7A 94.636 1939 86 6 1 1929 90655933 90657863 0.000000e+00 2988.0
12 TraesCS6A01G345800 chr7A 96.972 1354 39 2 1 1352 564246913 564245560 0.000000e+00 2272.0
13 TraesCS6A01G345800 chr7A 92.585 944 42 7 1074 1991 163913709 163914650 0.000000e+00 1330.0
14 TraesCS6A01G345800 chr7A 85.811 444 23 10 2281 2684 469013874 469014317 4.100000e-118 435.0
15 TraesCS6A01G345800 chr7A 87.444 223 22 4 2467 2684 26061758 26061537 4.440000e-63 252.0
16 TraesCS6A01G345800 chr1A 94.371 1741 81 10 177 1905 18104105 18105840 0.000000e+00 2656.0
17 TraesCS6A01G345800 chr1A 81.278 454 45 11 2270 2684 388945440 388945892 5.540000e-87 331.0
18 TraesCS6A01G345800 chr1A 82.581 155 16 8 1875 2027 539747353 539747208 2.810000e-25 126.0
19 TraesCS6A01G345800 chrUn 86.349 608 44 12 1442 2032 150818592 150819177 6.310000e-176 627.0
20 TraesCS6A01G345800 chr1B 83.447 441 30 13 2282 2684 8771012 8770577 1.170000e-98 370.0
21 TraesCS6A01G345800 chr6B 82.993 441 33 12 2282 2684 422315198 422315634 7.060000e-96 361.0
22 TraesCS6A01G345800 chr6B 85.116 215 16 4 2061 2274 653696548 653696747 3.500000e-49 206.0
23 TraesCS6A01G345800 chr6B 82.731 249 25 12 2036 2274 653713684 653713924 3.500000e-49 206.0
24 TraesCS6A01G345800 chr6B 84.390 205 27 3 2027 2228 653868316 653868518 2.110000e-46 196.0
25 TraesCS6A01G345800 chr6B 82.278 237 22 11 2046 2270 653186620 653186848 1.270000e-43 187.0
26 TraesCS6A01G345800 chr6B 93.220 59 4 0 2216 2274 653870044 653870102 1.320000e-13 87.9
27 TraesCS6A01G345800 chr2B 82.993 441 32 13 2282 2684 767914484 767914049 2.540000e-95 359.0
28 TraesCS6A01G345800 chr2B 96.970 33 1 0 2374 2406 722347598 722347630 3.730000e-04 56.5
29 TraesCS6A01G345800 chr2B 97.059 34 0 1 2374 2407 722347958 722347990 3.730000e-04 56.5
30 TraesCS6A01G345800 chr3B 82.540 441 34 13 2282 2684 810549458 810549023 5.500000e-92 348.0
31 TraesCS6A01G345800 chr3B 88.636 88 9 1 2276 2363 28310876 28310790 3.650000e-19 106.0
32 TraesCS6A01G345800 chr4A 82.313 441 34 17 2282 2684 707255296 707254862 2.560000e-90 342.0
33 TraesCS6A01G345800 chr4A 89.691 97 7 3 2271 2366 730695023 730694929 1.310000e-23 121.0
34 TraesCS6A01G345800 chr6D 92.797 236 13 2 2038 2270 432928200 432928434 3.310000e-89 339.0
35 TraesCS6A01G345800 chr6D 89.516 248 23 3 2027 2274 433277889 433278133 7.220000e-81 311.0
36 TraesCS6A01G345800 chr6D 85.802 162 17 4 2036 2193 432911548 432911707 1.650000e-37 167.0
37 TraesCS6A01G345800 chr6D 81.699 153 7 13 2131 2274 433257256 433257396 1.020000e-19 108.0
38 TraesCS6A01G345800 chr4D 90.698 86 8 0 2278 2363 97966235 97966150 6.070000e-22 115.0
39 TraesCS6A01G345800 chr5B 88.421 95 9 2 2268 2361 317074196 317074103 2.180000e-21 113.0
40 TraesCS6A01G345800 chr5B 86.170 94 13 0 2270 2363 520849147 520849240 4.730000e-18 102.0
41 TraesCS6A01G345800 chr2D 90.588 85 7 1 2277 2361 571925054 571924971 7.850000e-21 111.0
42 TraesCS6A01G345800 chr2D 89.535 86 7 2 2277 2361 629969919 629970003 1.020000e-19 108.0
43 TraesCS6A01G345800 chr1D 91.358 81 7 0 2281 2361 83695419 83695339 7.850000e-21 111.0
44 TraesCS6A01G345800 chr1D 85.106 94 9 3 2270 2363 5462488 5462400 1.020000e-14 91.6
45 TraesCS6A01G345800 chr1D 89.231 65 5 2 2281 2344 481988110 481988173 2.220000e-11 80.5
46 TraesCS6A01G345800 chr7D 88.636 88 9 1 2277 2363 458353194 458353107 3.650000e-19 106.0
47 TraesCS6A01G345800 chr5D 89.157 83 7 2 2282 2363 385694732 385694813 4.730000e-18 102.0
48 TraesCS6A01G345800 chr4B 87.500 88 10 1 2276 2363 616805602 616805688 1.700000e-17 100.0
49 TraesCS6A01G345800 chr4B 86.420 81 8 2 2595 2672 625357038 625356958 4.760000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G345800 chr6A 579137174 579139857 2683 False 4957 4957 100.000 1 2684 1 chr6A.!!$F2 2683
1 TraesCS6A01G345800 chr3A 1906649 1908675 2026 True 3286 3286 95.925 1 2030 1 chr3A.!!$R1 2029
2 TraesCS6A01G345800 chr2A 202073312 202075341 2029 False 3236 3236 95.479 1 2027 1 chr2A.!!$F1 2026
3 TraesCS6A01G345800 chr2A 35937806 35939796 1990 True 3099 3099 94.908 1 1978 1 chr2A.!!$R1 1977
4 TraesCS6A01G345800 chr2A 695287896 695289873 1977 True 2977 2977 93.606 1 2027 1 chr2A.!!$R2 2026
5 TraesCS6A01G345800 chr2A 703351121 703353007 1886 False 2752 2752 92.992 1 1897 1 chr2A.!!$F2 1896
6 TraesCS6A01G345800 chr5A 35642937 35644879 1942 True 3033 3033 94.869 1 1941 1 chr5A.!!$R1 1940
7 TraesCS6A01G345800 chr5A 650676334 650678242 1908 False 2889 2889 94.093 1 1897 1 chr5A.!!$F2 1896
8 TraesCS6A01G345800 chr7A 662137561 662139536 1975 False 2992 2992 93.924 1 1997 1 chr7A.!!$F4 1996
9 TraesCS6A01G345800 chr7A 90655933 90657863 1930 False 2988 2988 94.636 1 1929 1 chr7A.!!$F1 1928
10 TraesCS6A01G345800 chr7A 564245560 564246913 1353 True 2272 2272 96.972 1 1352 1 chr7A.!!$R2 1351
11 TraesCS6A01G345800 chr7A 163913709 163914650 941 False 1330 1330 92.585 1074 1991 1 chr7A.!!$F2 917
12 TraesCS6A01G345800 chr1A 18104105 18105840 1735 False 2656 2656 94.371 177 1905 1 chr1A.!!$F1 1728
13 TraesCS6A01G345800 chrUn 150818592 150819177 585 False 627 627 86.349 1442 2032 1 chrUn.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 902 0.737367 TGATGACGGCAAGAGAAGCG 60.737 55.0 0.0 0.0 0.0 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2327 0.097674 GTATGCAAAGCAGTGGCGAG 59.902 55.0 0.0 0.0 43.65 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
688 695 6.092748 GTGCAAAACTTGTTCAAAGAAGAGA 58.907 36.000 6.64 0.00 33.83 3.10
702 709 6.889722 TCAAAGAAGAGAAGAGGAAAACCAAA 59.110 34.615 0.00 0.00 0.00 3.28
706 713 6.892456 AGAAGAGAAGAGGAAAACCAAAAAGT 59.108 34.615 0.00 0.00 0.00 2.66
892 902 0.737367 TGATGACGGCAAGAGAAGCG 60.737 55.000 0.00 0.00 0.00 4.68
928 938 4.511826 CAGTTTCTTACTCGAAGCCAAAGT 59.488 41.667 0.00 0.00 33.85 2.66
1137 1148 1.352687 GAGGAGAGGAAGGTGGCTTTT 59.647 52.381 0.00 0.00 0.00 2.27
1159 1170 3.034635 GAGGAGAGGAAGGTGAGCAATA 58.965 50.000 0.00 0.00 0.00 1.90
1396 1433 1.340502 TGGGCGGTTTAGATGCAATGA 60.341 47.619 0.00 0.00 0.00 2.57
1483 1523 0.030195 TCTCATGGGAGGCATGGGTA 60.030 55.000 0.00 0.00 41.69 3.69
1492 1532 2.363975 GGCATGGGTACACCTCCGA 61.364 63.158 0.00 0.00 41.11 4.55
1546 1586 4.468713 TCCTCACACACATTTCCATGAAA 58.531 39.130 0.00 0.00 35.94 2.69
1585 1625 0.670546 CAACACCGTCGGAGCTTCAT 60.671 55.000 20.51 0.00 0.00 2.57
1734 1810 6.111382 TGATTTGCATTTTGAACTTGGTTGA 58.889 32.000 0.00 0.00 0.00 3.18
1737 1813 8.674263 ATTTGCATTTTGAACTTGGTTGAATA 57.326 26.923 0.00 0.00 0.00 1.75
1777 1873 5.606348 TTAAACTTGTGGGCATGAACTTT 57.394 34.783 0.00 0.00 0.00 2.66
1984 2102 4.088762 CGACGCACGGCAAATGCT 62.089 61.111 5.25 0.00 41.10 3.79
2022 2140 1.195900 GTTGCGCGGTTGTTGAAGATA 59.804 47.619 8.83 0.00 0.00 1.98
2027 2145 2.599082 CGCGGTTGTTGAAGATACTCTC 59.401 50.000 0.00 0.00 0.00 3.20
2032 2150 6.680625 GCGGTTGTTGAAGATACTCTCAGATA 60.681 42.308 0.00 0.00 0.00 1.98
2033 2151 6.915300 CGGTTGTTGAAGATACTCTCAGATAG 59.085 42.308 0.00 0.00 0.00 2.08
2034 2152 7.201741 CGGTTGTTGAAGATACTCTCAGATAGA 60.202 40.741 0.00 0.00 0.00 1.98
2042 2160 2.686558 CTCTCAGATAGAGCTCGTGC 57.313 55.000 8.37 0.07 45.22 5.34
2043 2161 1.266718 CTCTCAGATAGAGCTCGTGCC 59.733 57.143 8.37 0.00 45.22 5.01
2044 2162 1.133945 TCTCAGATAGAGCTCGTGCCT 60.134 52.381 8.37 5.83 44.35 4.75
2045 2163 1.266718 CTCAGATAGAGCTCGTGCCTC 59.733 57.143 8.37 3.57 40.80 4.70
2046 2164 1.133945 TCAGATAGAGCTCGTGCCTCT 60.134 52.381 8.37 10.54 40.80 3.69
2047 2165 1.680735 CAGATAGAGCTCGTGCCTCTT 59.319 52.381 8.37 0.00 40.80 2.85
2048 2166 1.953686 AGATAGAGCTCGTGCCTCTTC 59.046 52.381 8.37 8.60 40.80 2.87
2049 2167 1.678627 GATAGAGCTCGTGCCTCTTCA 59.321 52.381 8.37 0.00 40.80 3.02
2050 2168 1.098869 TAGAGCTCGTGCCTCTTCAG 58.901 55.000 8.37 0.00 40.80 3.02
2051 2169 1.809209 GAGCTCGTGCCTCTTCAGC 60.809 63.158 5.73 0.00 40.80 4.26
2052 2170 2.817396 GCTCGTGCCTCTTCAGCC 60.817 66.667 0.00 0.00 0.00 4.85
2053 2171 2.977178 CTCGTGCCTCTTCAGCCT 59.023 61.111 0.00 0.00 0.00 4.58
2054 2172 1.294780 CTCGTGCCTCTTCAGCCTT 59.705 57.895 0.00 0.00 0.00 4.35
2055 2173 0.739112 CTCGTGCCTCTTCAGCCTTC 60.739 60.000 0.00 0.00 0.00 3.46
2056 2174 2.097038 CGTGCCTCTTCAGCCTTCG 61.097 63.158 0.00 0.00 0.00 3.79
2057 2175 2.046892 TGCCTCTTCAGCCTTCGC 60.047 61.111 0.00 0.00 0.00 4.70
2058 2176 2.821810 GCCTCTTCAGCCTTCGCC 60.822 66.667 0.00 0.00 34.57 5.54
2059 2177 2.985456 CCTCTTCAGCCTTCGCCT 59.015 61.111 0.00 0.00 34.57 5.52
2060 2178 1.298014 CCTCTTCAGCCTTCGCCTT 59.702 57.895 0.00 0.00 34.57 4.35
2061 2179 0.742635 CCTCTTCAGCCTTCGCCTTC 60.743 60.000 0.00 0.00 34.57 3.46
2062 2180 0.248843 CTCTTCAGCCTTCGCCTTCT 59.751 55.000 0.00 0.00 34.57 2.85
2063 2181 1.478510 CTCTTCAGCCTTCGCCTTCTA 59.521 52.381 0.00 0.00 34.57 2.10
2064 2182 1.204941 TCTTCAGCCTTCGCCTTCTAC 59.795 52.381 0.00 0.00 34.57 2.59
2065 2183 0.249398 TTCAGCCTTCGCCTTCTACC 59.751 55.000 0.00 0.00 34.57 3.18
2066 2184 0.902984 TCAGCCTTCGCCTTCTACCA 60.903 55.000 0.00 0.00 34.57 3.25
2067 2185 0.741221 CAGCCTTCGCCTTCTACCAC 60.741 60.000 0.00 0.00 34.57 4.16
2068 2186 1.192146 AGCCTTCGCCTTCTACCACA 61.192 55.000 0.00 0.00 34.57 4.17
2069 2187 0.741221 GCCTTCGCCTTCTACCACAG 60.741 60.000 0.00 0.00 0.00 3.66
2070 2188 0.741221 CCTTCGCCTTCTACCACAGC 60.741 60.000 0.00 0.00 0.00 4.40
2072 2190 3.188786 CGCCTTCTACCACAGCGC 61.189 66.667 0.00 0.00 40.35 5.92
2073 2191 3.188786 GCCTTCTACCACAGCGCG 61.189 66.667 0.00 0.00 0.00 6.86
2074 2192 2.509336 CCTTCTACCACAGCGCGG 60.509 66.667 8.83 5.83 0.00 6.46
2075 2193 2.509336 CTTCTACCACAGCGCGGG 60.509 66.667 13.26 13.23 0.00 6.13
2076 2194 4.752879 TTCTACCACAGCGCGGGC 62.753 66.667 17.92 17.92 40.37 6.13
2112 2230 4.751431 GCCTTCAGCATTGGGAGT 57.249 55.556 0.00 0.00 42.97 3.85
2113 2231 2.967270 GCCTTCAGCATTGGGAGTT 58.033 52.632 0.00 0.00 42.97 3.01
2114 2232 0.529378 GCCTTCAGCATTGGGAGTTG 59.471 55.000 0.00 0.00 42.97 3.16
2115 2233 0.529378 CCTTCAGCATTGGGAGTTGC 59.471 55.000 0.00 0.00 39.17 4.17
2116 2234 1.250328 CTTCAGCATTGGGAGTTGCA 58.750 50.000 0.00 0.00 41.35 4.08
2117 2235 1.822990 CTTCAGCATTGGGAGTTGCAT 59.177 47.619 0.00 0.00 41.35 3.96
2118 2236 1.179152 TCAGCATTGGGAGTTGCATG 58.821 50.000 0.00 0.00 41.35 4.06
2119 2237 0.174845 CAGCATTGGGAGTTGCATGG 59.825 55.000 0.00 0.00 41.35 3.66
2120 2238 1.153509 GCATTGGGAGTTGCATGGC 60.154 57.895 0.00 0.00 38.72 4.40
2121 2239 1.140161 CATTGGGAGTTGCATGGCG 59.860 57.895 0.00 0.00 0.00 5.69
2122 2240 2.713967 ATTGGGAGTTGCATGGCGC 61.714 57.895 0.00 0.00 42.89 6.53
2123 2241 3.866379 TTGGGAGTTGCATGGCGCT 62.866 57.895 7.64 0.00 43.06 5.92
2124 2242 2.124736 GGGAGTTGCATGGCGCTA 60.125 61.111 7.64 0.00 43.06 4.26
2125 2243 2.472909 GGGAGTTGCATGGCGCTAC 61.473 63.158 7.64 0.00 45.43 3.58
2129 2247 2.724403 GTTGCATGGCGCTACAAAC 58.276 52.632 7.64 3.18 44.59 2.93
2130 2248 0.240945 GTTGCATGGCGCTACAAACT 59.759 50.000 7.64 0.00 44.59 2.66
2131 2249 0.958091 TTGCATGGCGCTACAAACTT 59.042 45.000 7.64 0.00 43.06 2.66
2132 2250 0.958091 TGCATGGCGCTACAAACTTT 59.042 45.000 7.64 0.00 43.06 2.66
2133 2251 1.068610 TGCATGGCGCTACAAACTTTC 60.069 47.619 7.64 0.00 43.06 2.62
2134 2252 1.200020 GCATGGCGCTACAAACTTTCT 59.800 47.619 7.64 0.00 37.77 2.52
2135 2253 2.855180 CATGGCGCTACAAACTTTCTG 58.145 47.619 7.64 0.00 0.00 3.02
2136 2254 1.234821 TGGCGCTACAAACTTTCTGG 58.765 50.000 7.64 0.00 0.00 3.86
2137 2255 1.202710 TGGCGCTACAAACTTTCTGGA 60.203 47.619 7.64 0.00 0.00 3.86
2138 2256 1.877443 GGCGCTACAAACTTTCTGGAA 59.123 47.619 7.64 0.00 0.00 3.53
2139 2257 2.292292 GGCGCTACAAACTTTCTGGAAA 59.708 45.455 7.64 0.00 0.00 3.13
2140 2258 3.243267 GGCGCTACAAACTTTCTGGAAAA 60.243 43.478 7.64 0.00 0.00 2.29
2141 2259 3.729217 GCGCTACAAACTTTCTGGAAAAC 59.271 43.478 0.00 0.00 0.00 2.43
2142 2260 4.497507 GCGCTACAAACTTTCTGGAAAACT 60.498 41.667 0.00 0.00 0.00 2.66
2143 2261 4.970003 CGCTACAAACTTTCTGGAAAACTG 59.030 41.667 0.00 0.00 0.00 3.16
2144 2262 5.220777 CGCTACAAACTTTCTGGAAAACTGA 60.221 40.000 0.00 0.00 0.00 3.41
2145 2263 5.971792 GCTACAAACTTTCTGGAAAACTGAC 59.028 40.000 0.00 0.00 0.00 3.51
2146 2264 6.183360 GCTACAAACTTTCTGGAAAACTGACT 60.183 38.462 0.00 0.00 0.00 3.41
2147 2265 6.590234 ACAAACTTTCTGGAAAACTGACTT 57.410 33.333 0.00 0.00 0.00 3.01
2148 2266 6.389906 ACAAACTTTCTGGAAAACTGACTTG 58.610 36.000 0.00 0.00 0.00 3.16
2149 2267 6.015434 ACAAACTTTCTGGAAAACTGACTTGT 60.015 34.615 0.00 0.00 0.00 3.16
2150 2268 5.819825 ACTTTCTGGAAAACTGACTTGTC 57.180 39.130 0.00 0.00 0.00 3.18
2151 2269 4.640647 ACTTTCTGGAAAACTGACTTGTCC 59.359 41.667 0.00 0.00 0.00 4.02
2152 2270 3.924114 TCTGGAAAACTGACTTGTCCA 57.076 42.857 0.00 0.00 36.90 4.02
2153 2271 3.541632 TCTGGAAAACTGACTTGTCCAC 58.458 45.455 0.00 0.00 34.67 4.02
2154 2272 2.285083 TGGAAAACTGACTTGTCCACG 58.715 47.619 0.00 0.00 33.43 4.94
2155 2273 2.285977 GGAAAACTGACTTGTCCACGT 58.714 47.619 0.00 0.00 0.00 4.49
2156 2274 2.681344 GGAAAACTGACTTGTCCACGTT 59.319 45.455 0.00 0.00 0.00 3.99
2157 2275 3.128068 GGAAAACTGACTTGTCCACGTTT 59.872 43.478 0.00 3.49 0.00 3.60
2158 2276 3.757745 AAACTGACTTGTCCACGTTTG 57.242 42.857 10.07 0.00 0.00 2.93
2159 2277 1.663695 ACTGACTTGTCCACGTTTGG 58.336 50.000 0.00 0.00 45.56 3.28
2168 2286 3.725819 CACGTTTGGAACCTCGCA 58.274 55.556 0.00 0.00 0.00 5.10
2169 2287 1.569493 CACGTTTGGAACCTCGCAG 59.431 57.895 0.00 0.00 0.00 5.18
2170 2288 2.251642 ACGTTTGGAACCTCGCAGC 61.252 57.895 0.00 0.00 0.00 5.25
2171 2289 2.250939 CGTTTGGAACCTCGCAGCA 61.251 57.895 0.00 0.00 0.00 4.41
2172 2290 1.282875 GTTTGGAACCTCGCAGCAC 59.717 57.895 0.00 0.00 0.00 4.40
2173 2291 1.153066 TTTGGAACCTCGCAGCACA 60.153 52.632 0.00 0.00 0.00 4.57
2174 2292 0.749818 TTTGGAACCTCGCAGCACAA 60.750 50.000 0.00 0.00 0.00 3.33
2175 2293 0.749818 TTGGAACCTCGCAGCACAAA 60.750 50.000 0.00 0.00 0.00 2.83
2176 2294 1.282875 GGAACCTCGCAGCACAAAC 59.717 57.895 0.00 0.00 0.00 2.93
2177 2295 1.444119 GGAACCTCGCAGCACAAACA 61.444 55.000 0.00 0.00 0.00 2.83
2178 2296 0.593128 GAACCTCGCAGCACAAACAT 59.407 50.000 0.00 0.00 0.00 2.71
2179 2297 1.804151 GAACCTCGCAGCACAAACATA 59.196 47.619 0.00 0.00 0.00 2.29
2180 2298 1.890876 ACCTCGCAGCACAAACATAA 58.109 45.000 0.00 0.00 0.00 1.90
2181 2299 1.535462 ACCTCGCAGCACAAACATAAC 59.465 47.619 0.00 0.00 0.00 1.89
2182 2300 1.535028 CCTCGCAGCACAAACATAACA 59.465 47.619 0.00 0.00 0.00 2.41
2183 2301 2.162208 CCTCGCAGCACAAACATAACAT 59.838 45.455 0.00 0.00 0.00 2.71
2184 2302 3.366273 CCTCGCAGCACAAACATAACATT 60.366 43.478 0.00 0.00 0.00 2.71
2185 2303 4.142708 CCTCGCAGCACAAACATAACATTA 60.143 41.667 0.00 0.00 0.00 1.90
2186 2304 5.363979 TCGCAGCACAAACATAACATTAA 57.636 34.783 0.00 0.00 0.00 1.40
2187 2305 5.948588 TCGCAGCACAAACATAACATTAAT 58.051 33.333 0.00 0.00 0.00 1.40
2188 2306 5.799435 TCGCAGCACAAACATAACATTAATG 59.201 36.000 14.01 14.01 0.00 1.90
2189 2307 5.572511 CGCAGCACAAACATAACATTAATGT 59.427 36.000 15.47 15.47 44.20 2.71
2200 2318 3.426787 ACATTAATGTTCACGGTGGGA 57.573 42.857 15.47 0.00 37.90 4.37
2201 2319 3.078837 ACATTAATGTTCACGGTGGGAC 58.921 45.455 15.47 8.27 37.90 4.46
2202 2320 2.188062 TTAATGTTCACGGTGGGACC 57.812 50.000 8.50 0.00 34.05 4.46
2203 2321 1.354101 TAATGTTCACGGTGGGACCT 58.646 50.000 8.50 0.00 35.66 3.85
2204 2322 0.476771 AATGTTCACGGTGGGACCTT 59.523 50.000 8.50 4.62 35.66 3.50
2205 2323 0.476771 ATGTTCACGGTGGGACCTTT 59.523 50.000 8.50 0.00 35.66 3.11
2206 2324 0.464735 TGTTCACGGTGGGACCTTTG 60.465 55.000 8.50 0.00 35.66 2.77
2207 2325 0.179040 GTTCACGGTGGGACCTTTGA 60.179 55.000 8.50 0.00 35.66 2.69
2208 2326 0.547075 TTCACGGTGGGACCTTTGAA 59.453 50.000 8.50 0.00 36.30 2.69
2209 2327 0.179040 TCACGGTGGGACCTTTGAAC 60.179 55.000 8.50 0.00 35.66 3.18
2210 2328 0.179029 CACGGTGGGACCTTTGAACT 60.179 55.000 0.00 0.00 35.66 3.01
2211 2329 0.108019 ACGGTGGGACCTTTGAACTC 59.892 55.000 0.00 0.00 35.66 3.01
2212 2330 0.949105 CGGTGGGACCTTTGAACTCG 60.949 60.000 0.00 0.00 35.66 4.18
2213 2331 1.235281 GGTGGGACCTTTGAACTCGC 61.235 60.000 0.00 0.00 34.73 5.03
2214 2332 1.072505 TGGGACCTTTGAACTCGCC 59.927 57.895 0.00 0.00 0.00 5.54
2215 2333 1.072505 GGGACCTTTGAACTCGCCA 59.927 57.895 0.00 0.00 0.00 5.69
2216 2334 1.235281 GGGACCTTTGAACTCGCCAC 61.235 60.000 0.00 0.00 0.00 5.01
2217 2335 0.250338 GGACCTTTGAACTCGCCACT 60.250 55.000 0.00 0.00 0.00 4.00
2218 2336 0.868406 GACCTTTGAACTCGCCACTG 59.132 55.000 0.00 0.00 0.00 3.66
2219 2337 1.166531 ACCTTTGAACTCGCCACTGC 61.167 55.000 0.00 0.00 0.00 4.40
2220 2338 0.886490 CCTTTGAACTCGCCACTGCT 60.886 55.000 0.00 0.00 34.43 4.24
2221 2339 0.947244 CTTTGAACTCGCCACTGCTT 59.053 50.000 0.00 0.00 34.43 3.91
2222 2340 1.334869 CTTTGAACTCGCCACTGCTTT 59.665 47.619 0.00 0.00 34.43 3.51
2223 2341 0.662619 TTGAACTCGCCACTGCTTTG 59.337 50.000 0.00 0.00 34.43 2.77
2224 2342 1.081840 GAACTCGCCACTGCTTTGC 60.082 57.895 0.00 0.00 34.43 3.68
2225 2343 1.785041 GAACTCGCCACTGCTTTGCA 61.785 55.000 0.00 0.00 36.92 4.08
2226 2344 1.174712 AACTCGCCACTGCTTTGCAT 61.175 50.000 0.00 0.00 38.13 3.96
2227 2345 0.321564 ACTCGCCACTGCTTTGCATA 60.322 50.000 0.00 0.00 38.13 3.14
2228 2346 0.097674 CTCGCCACTGCTTTGCATAC 59.902 55.000 0.00 0.00 38.13 2.39
2229 2347 0.321564 TCGCCACTGCTTTGCATACT 60.322 50.000 0.00 0.00 38.13 2.12
2230 2348 1.066502 TCGCCACTGCTTTGCATACTA 60.067 47.619 0.00 0.00 38.13 1.82
2231 2349 1.062587 CGCCACTGCTTTGCATACTAC 59.937 52.381 0.00 0.00 38.13 2.73
2232 2350 2.359900 GCCACTGCTTTGCATACTACT 58.640 47.619 0.00 0.00 38.13 2.57
2233 2351 2.096496 GCCACTGCTTTGCATACTACTG 59.904 50.000 0.00 0.00 38.13 2.74
2234 2352 2.096496 CCACTGCTTTGCATACTACTGC 59.904 50.000 0.00 0.00 38.13 4.40
2244 2362 4.288670 GCATACTACTGCAACTCTACGA 57.711 45.455 0.00 0.00 41.87 3.43
2245 2363 4.669318 GCATACTACTGCAACTCTACGAA 58.331 43.478 0.00 0.00 41.87 3.85
2246 2364 5.100259 GCATACTACTGCAACTCTACGAAA 58.900 41.667 0.00 0.00 41.87 3.46
2247 2365 5.230306 GCATACTACTGCAACTCTACGAAAG 59.770 44.000 0.00 0.00 41.87 2.62
2248 2366 4.175787 ACTACTGCAACTCTACGAAAGG 57.824 45.455 0.00 0.00 0.00 3.11
2249 2367 3.825014 ACTACTGCAACTCTACGAAAGGA 59.175 43.478 0.00 0.00 0.00 3.36
2250 2368 3.027974 ACTGCAACTCTACGAAAGGAC 57.972 47.619 0.00 0.00 0.00 3.85
2251 2369 2.364324 ACTGCAACTCTACGAAAGGACA 59.636 45.455 0.00 0.00 0.00 4.02
2252 2370 3.181469 ACTGCAACTCTACGAAAGGACAA 60.181 43.478 0.00 0.00 0.00 3.18
2253 2371 3.390135 TGCAACTCTACGAAAGGACAAG 58.610 45.455 0.00 0.00 0.00 3.16
2254 2372 3.181469 TGCAACTCTACGAAAGGACAAGT 60.181 43.478 0.00 0.00 0.00 3.16
2255 2373 3.808174 GCAACTCTACGAAAGGACAAGTT 59.192 43.478 0.00 0.00 0.00 2.66
2256 2374 4.272748 GCAACTCTACGAAAGGACAAGTTT 59.727 41.667 0.00 0.00 0.00 2.66
2257 2375 5.220796 GCAACTCTACGAAAGGACAAGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
2258 2376 6.018507 GCAACTCTACGAAAGGACAAGTTTTA 60.019 38.462 0.00 0.00 0.00 1.52
2259 2377 7.564988 CAACTCTACGAAAGGACAAGTTTTAG 58.435 38.462 0.00 0.00 0.00 1.85
2260 2378 6.814043 ACTCTACGAAAGGACAAGTTTTAGT 58.186 36.000 0.00 0.00 0.00 2.24
2261 2379 7.270779 ACTCTACGAAAGGACAAGTTTTAGTT 58.729 34.615 0.00 0.00 0.00 2.24
2262 2380 7.767659 ACTCTACGAAAGGACAAGTTTTAGTTT 59.232 33.333 0.00 0.00 0.00 2.66
2263 2381 7.912383 TCTACGAAAGGACAAGTTTTAGTTTG 58.088 34.615 0.00 0.00 0.00 2.93
2264 2382 6.505044 ACGAAAGGACAAGTTTTAGTTTGT 57.495 33.333 0.00 0.00 40.04 2.83
2265 2383 6.916440 ACGAAAGGACAAGTTTTAGTTTGTT 58.084 32.000 0.00 0.00 37.63 2.83
2266 2384 6.804783 ACGAAAGGACAAGTTTTAGTTTGTTG 59.195 34.615 0.00 0.00 37.63 3.33
2267 2385 7.024768 CGAAAGGACAAGTTTTAGTTTGTTGA 58.975 34.615 0.00 0.00 37.63 3.18
2268 2386 7.539366 CGAAAGGACAAGTTTTAGTTTGTTGAA 59.461 33.333 0.00 0.00 37.63 2.69
2269 2387 9.366216 GAAAGGACAAGTTTTAGTTTGTTGAAT 57.634 29.630 0.00 0.00 37.63 2.57
2270 2388 9.719355 AAAGGACAAGTTTTAGTTTGTTGAATT 57.281 25.926 0.00 0.00 37.63 2.17
2271 2389 9.719355 AAGGACAAGTTTTAGTTTGTTGAATTT 57.281 25.926 0.00 0.00 37.63 1.82
2272 2390 9.719355 AGGACAAGTTTTAGTTTGTTGAATTTT 57.281 25.926 0.00 0.00 37.63 1.82
2318 2436 5.500645 ACCTTGAACTTGTAGTTGAAAGC 57.499 39.130 0.00 0.00 38.80 3.51
2319 2437 5.193679 ACCTTGAACTTGTAGTTGAAAGCT 58.806 37.500 0.00 0.00 38.80 3.74
2320 2438 6.354130 ACCTTGAACTTGTAGTTGAAAGCTA 58.646 36.000 0.00 0.00 38.80 3.32
2321 2439 6.826741 ACCTTGAACTTGTAGTTGAAAGCTAA 59.173 34.615 0.00 0.00 38.80 3.09
2322 2440 7.338449 ACCTTGAACTTGTAGTTGAAAGCTAAA 59.662 33.333 0.00 0.00 38.80 1.85
2323 2441 8.352942 CCTTGAACTTGTAGTTGAAAGCTAAAT 58.647 33.333 0.00 0.00 38.80 1.40
2324 2442 9.387123 CTTGAACTTGTAGTTGAAAGCTAAATC 57.613 33.333 0.00 0.00 38.80 2.17
2325 2443 8.445275 TGAACTTGTAGTTGAAAGCTAAATCA 57.555 30.769 0.00 0.00 38.80 2.57
2326 2444 8.898761 TGAACTTGTAGTTGAAAGCTAAATCAA 58.101 29.630 5.64 5.64 38.80 2.57
2327 2445 9.730420 GAACTTGTAGTTGAAAGCTAAATCAAA 57.270 29.630 10.13 0.00 38.80 2.69
2328 2446 9.516314 AACTTGTAGTTGAAAGCTAAATCAAAC 57.484 29.630 10.13 7.51 37.00 2.93
2329 2447 8.135529 ACTTGTAGTTGAAAGCTAAATCAAACC 58.864 33.333 10.13 1.82 37.31 3.27
2330 2448 7.817418 TGTAGTTGAAAGCTAAATCAAACCT 57.183 32.000 10.13 7.67 37.31 3.50
2331 2449 7.871853 TGTAGTTGAAAGCTAAATCAAACCTC 58.128 34.615 10.13 0.99 37.31 3.85
2332 2450 6.959639 AGTTGAAAGCTAAATCAAACCTCA 57.040 33.333 10.13 0.00 37.31 3.86
2333 2451 7.346751 AGTTGAAAGCTAAATCAAACCTCAA 57.653 32.000 10.13 0.00 37.31 3.02
2334 2452 7.781056 AGTTGAAAGCTAAATCAAACCTCAAA 58.219 30.769 10.13 0.00 37.31 2.69
2335 2453 7.706607 AGTTGAAAGCTAAATCAAACCTCAAAC 59.293 33.333 10.13 0.00 37.31 2.93
2336 2454 7.346751 TGAAAGCTAAATCAAACCTCAAACT 57.653 32.000 0.00 0.00 0.00 2.66
2337 2455 7.781056 TGAAAGCTAAATCAAACCTCAAACTT 58.219 30.769 0.00 0.00 0.00 2.66
2338 2456 8.257306 TGAAAGCTAAATCAAACCTCAAACTTT 58.743 29.630 0.00 0.00 0.00 2.66
2339 2457 9.098355 GAAAGCTAAATCAAACCTCAAACTTTT 57.902 29.630 0.00 0.00 0.00 2.27
2345 2463 8.902540 AAATCAAACCTCAAACTTTTAATCCC 57.097 30.769 0.00 0.00 0.00 3.85
2346 2464 7.855784 ATCAAACCTCAAACTTTTAATCCCT 57.144 32.000 0.00 0.00 0.00 4.20
2347 2465 7.049799 TCAAACCTCAAACTTTTAATCCCTG 57.950 36.000 0.00 0.00 0.00 4.45
2348 2466 6.836527 TCAAACCTCAAACTTTTAATCCCTGA 59.163 34.615 0.00 0.00 0.00 3.86
2349 2467 7.343316 TCAAACCTCAAACTTTTAATCCCTGAA 59.657 33.333 0.00 0.00 0.00 3.02
2350 2468 7.669089 AACCTCAAACTTTTAATCCCTGAAA 57.331 32.000 0.00 0.00 0.00 2.69
2351 2469 7.855784 ACCTCAAACTTTTAATCCCTGAAAT 57.144 32.000 0.00 0.00 0.00 2.17
2352 2470 7.670364 ACCTCAAACTTTTAATCCCTGAAATG 58.330 34.615 0.00 0.00 0.00 2.32
2353 2471 7.508977 ACCTCAAACTTTTAATCCCTGAAATGA 59.491 33.333 0.00 0.00 0.00 2.57
2354 2472 8.031277 CCTCAAACTTTTAATCCCTGAAATGAG 58.969 37.037 0.00 0.00 0.00 2.90
2355 2473 7.378181 TCAAACTTTTAATCCCTGAAATGAGC 58.622 34.615 0.00 0.00 0.00 4.26
2356 2474 6.916360 AACTTTTAATCCCTGAAATGAGCA 57.084 33.333 0.00 0.00 0.00 4.26
2357 2475 6.272822 ACTTTTAATCCCTGAAATGAGCAC 57.727 37.500 0.00 0.00 0.00 4.40
2358 2476 5.774690 ACTTTTAATCCCTGAAATGAGCACA 59.225 36.000 0.00 0.00 0.00 4.57
2359 2477 5.643379 TTTAATCCCTGAAATGAGCACAC 57.357 39.130 0.00 0.00 0.00 3.82
2360 2478 2.134789 ATCCCTGAAATGAGCACACC 57.865 50.000 0.00 0.00 0.00 4.16
2361 2479 0.321564 TCCCTGAAATGAGCACACCG 60.322 55.000 0.00 0.00 0.00 4.94
2362 2480 0.321564 CCCTGAAATGAGCACACCGA 60.322 55.000 0.00 0.00 0.00 4.69
2363 2481 1.679944 CCCTGAAATGAGCACACCGAT 60.680 52.381 0.00 0.00 0.00 4.18
2364 2482 2.086869 CCTGAAATGAGCACACCGATT 58.913 47.619 0.00 0.00 0.00 3.34
2365 2483 2.096496 CCTGAAATGAGCACACCGATTC 59.904 50.000 0.00 0.00 0.00 2.52
2366 2484 2.083774 TGAAATGAGCACACCGATTCC 58.916 47.619 0.00 0.00 0.00 3.01
2367 2485 1.062587 GAAATGAGCACACCGATTCCG 59.937 52.381 0.00 0.00 0.00 4.30
2377 2495 3.617368 CGATTCCGGTCTCCCTGT 58.383 61.111 0.00 0.00 0.00 4.00
2378 2496 1.898154 CGATTCCGGTCTCCCTGTT 59.102 57.895 0.00 0.00 0.00 3.16
2379 2497 0.249398 CGATTCCGGTCTCCCTGTTT 59.751 55.000 0.00 0.00 0.00 2.83
2380 2498 1.338769 CGATTCCGGTCTCCCTGTTTT 60.339 52.381 0.00 0.00 0.00 2.43
2381 2499 2.357075 GATTCCGGTCTCCCTGTTTTC 58.643 52.381 0.00 0.00 0.00 2.29
2382 2500 1.133363 TTCCGGTCTCCCTGTTTTCA 58.867 50.000 0.00 0.00 0.00 2.69
2383 2501 1.133363 TCCGGTCTCCCTGTTTTCAA 58.867 50.000 0.00 0.00 0.00 2.69
2384 2502 1.702957 TCCGGTCTCCCTGTTTTCAAT 59.297 47.619 0.00 0.00 0.00 2.57
2385 2503 1.812571 CCGGTCTCCCTGTTTTCAATG 59.187 52.381 0.00 0.00 0.00 2.82
2386 2504 1.812571 CGGTCTCCCTGTTTTCAATGG 59.187 52.381 0.00 0.00 0.00 3.16
2387 2505 2.171003 GGTCTCCCTGTTTTCAATGGG 58.829 52.381 0.00 0.00 36.84 4.00
2388 2506 2.225017 GGTCTCCCTGTTTTCAATGGGA 60.225 50.000 0.00 0.00 40.56 4.37
2389 2507 3.564352 GGTCTCCCTGTTTTCAATGGGAT 60.564 47.826 0.00 0.00 41.50 3.85
2390 2508 4.089361 GTCTCCCTGTTTTCAATGGGATT 58.911 43.478 0.00 0.00 41.50 3.01
2391 2509 4.082026 GTCTCCCTGTTTTCAATGGGATTG 60.082 45.833 0.00 0.00 41.50 2.67
2392 2510 3.834231 CTCCCTGTTTTCAATGGGATTGT 59.166 43.478 0.00 0.00 41.50 2.71
2393 2511 3.831911 TCCCTGTTTTCAATGGGATTGTC 59.168 43.478 0.00 0.00 38.76 3.18
2394 2512 3.367292 CCCTGTTTTCAATGGGATTGTCG 60.367 47.826 0.00 0.00 41.02 4.35
2395 2513 3.367292 CCTGTTTTCAATGGGATTGTCGG 60.367 47.826 0.00 0.00 41.02 4.79
2396 2514 2.029470 TGTTTTCAATGGGATTGTCGGC 60.029 45.455 0.00 0.00 41.02 5.54
2397 2515 1.916506 TTTCAATGGGATTGTCGGCA 58.083 45.000 0.00 0.00 41.02 5.69
2398 2516 1.462616 TTCAATGGGATTGTCGGCAG 58.537 50.000 0.00 0.00 41.02 4.85
2399 2517 0.394216 TCAATGGGATTGTCGGCAGG 60.394 55.000 0.00 0.00 41.02 4.85
2400 2518 0.680921 CAATGGGATTGTCGGCAGGT 60.681 55.000 0.00 0.00 35.57 4.00
2401 2519 0.394352 AATGGGATTGTCGGCAGGTC 60.394 55.000 0.00 0.00 0.00 3.85
2402 2520 1.274703 ATGGGATTGTCGGCAGGTCT 61.275 55.000 0.00 0.00 0.00 3.85
2403 2521 1.153349 GGGATTGTCGGCAGGTCTC 60.153 63.158 0.00 0.00 0.00 3.36
2404 2522 1.519455 GGATTGTCGGCAGGTCTCG 60.519 63.158 0.00 0.00 0.00 4.04
2405 2523 1.519455 GATTGTCGGCAGGTCTCGG 60.519 63.158 0.00 0.00 0.00 4.63
2406 2524 1.945354 GATTGTCGGCAGGTCTCGGA 61.945 60.000 0.00 0.00 0.00 4.55
2407 2525 1.330655 ATTGTCGGCAGGTCTCGGAT 61.331 55.000 0.00 0.00 0.00 4.18
2408 2526 2.105128 GTCGGCAGGTCTCGGATG 59.895 66.667 0.00 0.00 0.00 3.51
2409 2527 3.838271 TCGGCAGGTCTCGGATGC 61.838 66.667 0.00 0.00 39.25 3.91
2410 2528 4.147449 CGGCAGGTCTCGGATGCA 62.147 66.667 3.96 0.00 41.78 3.96
2411 2529 2.202987 GGCAGGTCTCGGATGCAG 60.203 66.667 3.96 0.00 41.78 4.41
2412 2530 2.894387 GCAGGTCTCGGATGCAGC 60.894 66.667 0.00 0.00 39.75 5.25
2413 2531 2.202987 CAGGTCTCGGATGCAGCC 60.203 66.667 12.07 12.07 0.00 4.85
2414 2532 3.474570 AGGTCTCGGATGCAGCCC 61.475 66.667 16.93 6.63 0.00 5.19
2448 2566 2.819595 CCCACCAGGCGAATCGTG 60.820 66.667 4.07 0.00 0.00 4.35
2449 2567 3.499737 CCACCAGGCGAATCGTGC 61.500 66.667 4.07 0.00 0.00 5.34
2450 2568 2.434884 CACCAGGCGAATCGTGCT 60.435 61.111 4.07 0.00 0.00 4.40
2451 2569 2.034879 CACCAGGCGAATCGTGCTT 61.035 57.895 4.07 0.00 0.00 3.91
2452 2570 1.302511 ACCAGGCGAATCGTGCTTT 60.303 52.632 4.07 0.00 0.00 3.51
2453 2571 0.889186 ACCAGGCGAATCGTGCTTTT 60.889 50.000 4.07 0.00 0.00 2.27
2454 2572 0.179189 CCAGGCGAATCGTGCTTTTC 60.179 55.000 4.07 0.00 0.00 2.29
2455 2573 0.179189 CAGGCGAATCGTGCTTTTCC 60.179 55.000 4.07 0.00 0.00 3.13
2456 2574 0.321653 AGGCGAATCGTGCTTTTCCT 60.322 50.000 4.07 0.00 0.00 3.36
2457 2575 0.521735 GGCGAATCGTGCTTTTCCTT 59.478 50.000 4.07 0.00 0.00 3.36
2458 2576 1.068541 GGCGAATCGTGCTTTTCCTTT 60.069 47.619 4.07 0.00 0.00 3.11
2459 2577 2.607038 GGCGAATCGTGCTTTTCCTTTT 60.607 45.455 4.07 0.00 0.00 2.27
2460 2578 3.049912 GCGAATCGTGCTTTTCCTTTTT 58.950 40.909 4.07 0.00 0.00 1.94
2461 2579 3.121362 GCGAATCGTGCTTTTCCTTTTTG 60.121 43.478 4.07 0.00 0.00 2.44
2462 2580 4.041723 CGAATCGTGCTTTTCCTTTTTGT 58.958 39.130 0.00 0.00 0.00 2.83
2463 2581 5.209240 CGAATCGTGCTTTTCCTTTTTGTA 58.791 37.500 0.00 0.00 0.00 2.41
2464 2582 5.683743 CGAATCGTGCTTTTCCTTTTTGTAA 59.316 36.000 0.00 0.00 0.00 2.41
2465 2583 6.197468 CGAATCGTGCTTTTCCTTTTTGTAAA 59.803 34.615 0.00 0.00 0.00 2.01
2466 2584 7.253817 CGAATCGTGCTTTTCCTTTTTGTAAAA 60.254 33.333 0.00 0.00 0.00 1.52
2467 2585 6.879188 TCGTGCTTTTCCTTTTTGTAAAAG 57.121 33.333 5.19 5.19 41.17 2.27
2468 2586 5.808030 TCGTGCTTTTCCTTTTTGTAAAAGG 59.192 36.000 19.96 19.96 46.28 3.11
2469 2587 5.501736 CGTGCTTTTCCTTTTTGTAAAAGGC 60.502 40.000 20.82 12.17 44.92 4.35
2470 2588 4.568760 TGCTTTTCCTTTTTGTAAAAGGCG 59.431 37.500 20.82 12.39 44.92 5.52
2471 2589 4.806775 GCTTTTCCTTTTTGTAAAAGGCGA 59.193 37.500 20.82 12.05 44.92 5.54
2472 2590 5.465390 GCTTTTCCTTTTTGTAAAAGGCGAT 59.535 36.000 20.82 0.00 44.92 4.58
2473 2591 6.018262 GCTTTTCCTTTTTGTAAAAGGCGATT 60.018 34.615 20.82 0.00 44.92 3.34
2474 2592 7.466725 GCTTTTCCTTTTTGTAAAAGGCGATTT 60.467 33.333 20.82 0.00 44.92 2.17
2475 2593 8.943909 TTTTCCTTTTTGTAAAAGGCGATTTA 57.056 26.923 20.82 5.27 44.92 1.40
2476 2594 8.943909 TTTCCTTTTTGTAAAAGGCGATTTAA 57.056 26.923 20.82 9.91 44.92 1.52
2477 2595 8.943909 TTCCTTTTTGTAAAAGGCGATTTAAA 57.056 26.923 20.82 9.36 44.92 1.52
2478 2596 8.943909 TCCTTTTTGTAAAAGGCGATTTAAAA 57.056 26.923 20.82 3.53 44.92 1.52
2479 2597 9.379791 TCCTTTTTGTAAAAGGCGATTTAAAAA 57.620 25.926 20.82 8.96 44.92 1.94
2489 2607 9.974980 AAAAGGCGATTTAAAAATTAGACTCAA 57.025 25.926 0.00 0.00 0.00 3.02
2490 2608 9.626045 AAAGGCGATTTAAAAATTAGACTCAAG 57.374 29.630 0.00 0.00 0.00 3.02
2491 2609 7.762382 AGGCGATTTAAAAATTAGACTCAAGG 58.238 34.615 0.00 0.00 0.00 3.61
2492 2610 6.972901 GGCGATTTAAAAATTAGACTCAAGGG 59.027 38.462 0.00 0.00 0.00 3.95
2493 2611 7.148137 GGCGATTTAAAAATTAGACTCAAGGGA 60.148 37.037 0.00 0.00 0.00 4.20
2494 2612 8.241367 GCGATTTAAAAATTAGACTCAAGGGAA 58.759 33.333 0.00 0.00 0.00 3.97
2498 2616 9.509956 TTTAAAAATTAGACTCAAGGGAATCGA 57.490 29.630 0.00 0.00 0.00 3.59
2499 2617 7.996098 AAAAATTAGACTCAAGGGAATCGAA 57.004 32.000 0.00 0.00 0.00 3.71
2500 2618 6.986904 AAATTAGACTCAAGGGAATCGAAC 57.013 37.500 0.00 0.00 0.00 3.95
2501 2619 5.941555 ATTAGACTCAAGGGAATCGAACT 57.058 39.130 0.00 0.00 0.00 3.01
2502 2620 5.740290 TTAGACTCAAGGGAATCGAACTT 57.260 39.130 0.00 0.00 0.00 2.66
2503 2621 3.931578 AGACTCAAGGGAATCGAACTTG 58.068 45.455 13.17 13.17 42.14 3.16
2504 2622 3.003480 GACTCAAGGGAATCGAACTTGG 58.997 50.000 16.95 12.26 41.35 3.61
2505 2623 2.290323 ACTCAAGGGAATCGAACTTGGG 60.290 50.000 16.12 16.12 45.75 4.12
2506 2624 1.702957 TCAAGGGAATCGAACTTGGGT 59.297 47.619 16.95 0.00 41.35 4.51
2507 2625 1.812571 CAAGGGAATCGAACTTGGGTG 59.187 52.381 12.09 0.00 38.29 4.61
2508 2626 0.322546 AGGGAATCGAACTTGGGTGC 60.323 55.000 0.00 0.00 0.00 5.01
2509 2627 0.322546 GGGAATCGAACTTGGGTGCT 60.323 55.000 0.00 0.00 0.00 4.40
2510 2628 0.804989 GGAATCGAACTTGGGTGCTG 59.195 55.000 0.00 0.00 0.00 4.41
2511 2629 0.804989 GAATCGAACTTGGGTGCTGG 59.195 55.000 0.00 0.00 0.00 4.85
2512 2630 0.110486 AATCGAACTTGGGTGCTGGT 59.890 50.000 0.00 0.00 0.00 4.00
2513 2631 0.606401 ATCGAACTTGGGTGCTGGTG 60.606 55.000 0.00 0.00 0.00 4.17
2514 2632 2.908073 CGAACTTGGGTGCTGGTGC 61.908 63.158 0.00 0.00 40.20 5.01
2515 2633 1.529244 GAACTTGGGTGCTGGTGCT 60.529 57.895 0.00 0.00 40.48 4.40
2516 2634 1.076044 AACTTGGGTGCTGGTGCTT 60.076 52.632 0.00 0.00 40.48 3.91
2517 2635 1.109323 AACTTGGGTGCTGGTGCTTC 61.109 55.000 0.00 0.00 40.48 3.86
2518 2636 1.529010 CTTGGGTGCTGGTGCTTCA 60.529 57.895 0.00 0.00 40.48 3.02
2519 2637 1.076412 TTGGGTGCTGGTGCTTCAA 60.076 52.632 0.00 0.00 40.48 2.69
2520 2638 0.685785 TTGGGTGCTGGTGCTTCAAA 60.686 50.000 0.00 0.00 40.48 2.69
2521 2639 0.685785 TGGGTGCTGGTGCTTCAAAA 60.686 50.000 0.00 0.00 40.48 2.44
2522 2640 0.463620 GGGTGCTGGTGCTTCAAAAA 59.536 50.000 0.00 0.00 40.48 1.94
2523 2641 1.570813 GGTGCTGGTGCTTCAAAAAC 58.429 50.000 0.00 0.00 40.48 2.43
2524 2642 1.570813 GTGCTGGTGCTTCAAAAACC 58.429 50.000 0.00 0.00 40.48 3.27
2525 2643 0.463620 TGCTGGTGCTTCAAAAACCC 59.536 50.000 0.00 0.00 40.48 4.11
2526 2644 0.752658 GCTGGTGCTTCAAAAACCCT 59.247 50.000 0.00 0.00 36.03 4.34
2527 2645 1.269778 GCTGGTGCTTCAAAAACCCTC 60.270 52.381 0.00 0.00 36.03 4.30
2528 2646 1.341209 CTGGTGCTTCAAAAACCCTCC 59.659 52.381 0.00 0.00 32.70 4.30
2529 2647 0.679505 GGTGCTTCAAAAACCCTCCC 59.320 55.000 0.00 0.00 0.00 4.30
2530 2648 0.313987 GTGCTTCAAAAACCCTCCCG 59.686 55.000 0.00 0.00 0.00 5.14
2531 2649 1.289066 GCTTCAAAAACCCTCCCGC 59.711 57.895 0.00 0.00 0.00 6.13
2532 2650 1.179174 GCTTCAAAAACCCTCCCGCT 61.179 55.000 0.00 0.00 0.00 5.52
2533 2651 1.884928 GCTTCAAAAACCCTCCCGCTA 60.885 52.381 0.00 0.00 0.00 4.26
2534 2652 2.084546 CTTCAAAAACCCTCCCGCTAG 58.915 52.381 0.00 0.00 0.00 3.42
2535 2653 0.322187 TCAAAAACCCTCCCGCTAGC 60.322 55.000 4.06 4.06 0.00 3.42
2536 2654 1.001269 AAAAACCCTCCCGCTAGCC 60.001 57.895 9.66 0.00 0.00 3.93
2537 2655 1.785353 AAAAACCCTCCCGCTAGCCA 61.785 55.000 9.66 0.00 0.00 4.75
2538 2656 2.198304 AAAACCCTCCCGCTAGCCAG 62.198 60.000 9.66 2.50 0.00 4.85
2539 2657 3.925914 AACCCTCCCGCTAGCCAGT 62.926 63.158 9.66 0.00 0.00 4.00
2540 2658 3.541713 CCCTCCCGCTAGCCAGTC 61.542 72.222 9.66 0.00 0.00 3.51
2541 2659 2.443016 CCTCCCGCTAGCCAGTCT 60.443 66.667 9.66 0.00 0.00 3.24
2542 2660 1.152735 CCTCCCGCTAGCCAGTCTA 60.153 63.158 9.66 0.00 0.00 2.59
2543 2661 0.755698 CCTCCCGCTAGCCAGTCTAA 60.756 60.000 9.66 0.00 0.00 2.10
2544 2662 0.386113 CTCCCGCTAGCCAGTCTAAC 59.614 60.000 9.66 0.00 0.00 2.34
2545 2663 1.041447 TCCCGCTAGCCAGTCTAACC 61.041 60.000 9.66 0.00 0.00 2.85
2546 2664 1.065928 CCGCTAGCCAGTCTAACCG 59.934 63.158 9.66 0.00 0.00 4.44
2547 2665 1.381928 CCGCTAGCCAGTCTAACCGA 61.382 60.000 9.66 0.00 0.00 4.69
2548 2666 0.248539 CGCTAGCCAGTCTAACCGAC 60.249 60.000 9.66 0.00 43.17 4.79
2558 2676 3.213249 GTCTAACCGACGACAATCAGT 57.787 47.619 0.00 0.00 32.04 3.41
2559 2677 3.572584 GTCTAACCGACGACAATCAGTT 58.427 45.455 0.00 0.00 32.04 3.16
2560 2678 3.985925 GTCTAACCGACGACAATCAGTTT 59.014 43.478 0.00 0.00 32.04 2.66
2561 2679 4.446719 GTCTAACCGACGACAATCAGTTTT 59.553 41.667 0.00 0.00 32.04 2.43
2562 2680 5.630680 GTCTAACCGACGACAATCAGTTTTA 59.369 40.000 0.00 0.00 32.04 1.52
2563 2681 6.144402 GTCTAACCGACGACAATCAGTTTTAA 59.856 38.462 0.00 0.00 32.04 1.52
2564 2682 5.738118 AACCGACGACAATCAGTTTTAAA 57.262 34.783 0.00 0.00 0.00 1.52
2565 2683 5.934935 ACCGACGACAATCAGTTTTAAAT 57.065 34.783 0.00 0.00 0.00 1.40
2566 2684 5.685841 ACCGACGACAATCAGTTTTAAATG 58.314 37.500 0.00 0.00 0.00 2.32
2567 2685 5.467399 ACCGACGACAATCAGTTTTAAATGA 59.533 36.000 0.00 0.00 37.42 2.57
2568 2686 6.148811 ACCGACGACAATCAGTTTTAAATGAT 59.851 34.615 0.00 0.00 44.65 2.45
2569 2687 7.332430 ACCGACGACAATCAGTTTTAAATGATA 59.668 33.333 5.92 0.00 42.25 2.15
2570 2688 8.172484 CCGACGACAATCAGTTTTAAATGATAA 58.828 33.333 5.92 0.00 42.25 1.75
2571 2689 9.199184 CGACGACAATCAGTTTTAAATGATAAG 57.801 33.333 5.92 5.22 42.25 1.73
2572 2690 8.895932 ACGACAATCAGTTTTAAATGATAAGC 57.104 30.769 5.92 0.00 42.25 3.09
2573 2691 8.511321 ACGACAATCAGTTTTAAATGATAAGCA 58.489 29.630 5.92 0.00 42.25 3.91
2574 2692 8.788813 CGACAATCAGTTTTAAATGATAAGCAC 58.211 33.333 5.92 0.00 42.25 4.40
2575 2693 8.673626 ACAATCAGTTTTAAATGATAAGCACG 57.326 30.769 5.92 0.00 42.25 5.34
2576 2694 8.511321 ACAATCAGTTTTAAATGATAAGCACGA 58.489 29.630 5.92 0.00 42.25 4.35
2577 2695 9.340695 CAATCAGTTTTAAATGATAAGCACGAA 57.659 29.630 5.92 0.00 42.25 3.85
2578 2696 9.906660 AATCAGTTTTAAATGATAAGCACGAAA 57.093 25.926 5.92 0.00 42.25 3.46
2579 2697 8.722342 TCAGTTTTAAATGATAAGCACGAAAC 57.278 30.769 0.00 0.00 0.00 2.78
2580 2698 8.564574 TCAGTTTTAAATGATAAGCACGAAACT 58.435 29.630 0.00 0.00 0.00 2.66
2581 2699 9.820229 CAGTTTTAAATGATAAGCACGAAACTA 57.180 29.630 0.00 0.00 0.00 2.24
2591 2709 9.157104 TGATAAGCACGAAACTATTTAATCACA 57.843 29.630 0.00 0.00 0.00 3.58
2595 2713 7.916552 AGCACGAAACTATTTAATCACATACC 58.083 34.615 0.00 0.00 0.00 2.73
2596 2714 7.551262 AGCACGAAACTATTTAATCACATACCA 59.449 33.333 0.00 0.00 0.00 3.25
2597 2715 7.638683 GCACGAAACTATTTAATCACATACCAC 59.361 37.037 0.00 0.00 0.00 4.16
2598 2716 8.661257 CACGAAACTATTTAATCACATACCACA 58.339 33.333 0.00 0.00 0.00 4.17
2599 2717 9.221933 ACGAAACTATTTAATCACATACCACAA 57.778 29.630 0.00 0.00 0.00 3.33
2600 2718 9.485591 CGAAACTATTTAATCACATACCACAAC 57.514 33.333 0.00 0.00 0.00 3.32
2604 2722 9.461312 ACTATTTAATCACATACCACAACATGT 57.539 29.630 0.00 0.00 35.79 3.21
2607 2725 9.995003 ATTTAATCACATACCACAACATGTTTT 57.005 25.926 8.77 0.00 33.12 2.43
2608 2726 9.823647 TTTAATCACATACCACAACATGTTTTT 57.176 25.926 8.77 0.00 33.12 1.94
2680 2798 8.757164 ACTTCTCGTTTTCAAAATTTCTTTGT 57.243 26.923 0.00 0.00 0.00 2.83
2681 2799 8.647226 ACTTCTCGTTTTCAAAATTTCTTTGTG 58.353 29.630 0.00 0.00 0.00 3.33
2682 2800 8.527567 TTCTCGTTTTCAAAATTTCTTTGTGT 57.472 26.923 0.00 0.00 0.00 3.72
2683 2801 8.527567 TCTCGTTTTCAAAATTTCTTTGTGTT 57.472 26.923 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
505 512 1.535204 CCTTTTGACAAGCCGCCCAT 61.535 55.000 0.00 0.00 0.00 4.00
688 695 5.719563 TCTTCCACTTTTTGGTTTTCCTCTT 59.280 36.000 0.00 0.00 46.97 2.85
702 709 5.772169 CCTTCCTTTCTTGATCTTCCACTTT 59.228 40.000 0.00 0.00 0.00 2.66
706 713 3.657727 ACCCTTCCTTTCTTGATCTTCCA 59.342 43.478 0.00 0.00 0.00 3.53
892 902 3.127425 AGAAACTGAGTTGGGTGTAGC 57.873 47.619 0.00 0.00 0.00 3.58
928 938 1.773856 TTCTTGCACCCATCCGGTCA 61.774 55.000 0.00 0.00 43.58 4.02
1137 1148 0.115152 TGCTCACCTTCCTCTCCTCA 59.885 55.000 0.00 0.00 0.00 3.86
1159 1170 2.550208 CCAACAACCTAGTTCGCTCCTT 60.550 50.000 0.00 0.00 0.00 3.36
1396 1433 1.681327 CAAAGCCAGCCATGCCTCT 60.681 57.895 0.00 0.00 0.00 3.69
1483 1523 4.082523 CATGGCGGTCGGAGGTGT 62.083 66.667 0.00 0.00 0.00 4.16
1504 1544 3.431486 GGAGGCTCATCGAAAGACATTCT 60.431 47.826 17.69 0.00 46.97 2.40
1529 1569 4.317488 GGCATTTTCATGGAAATGTGTGT 58.683 39.130 31.04 2.11 44.80 3.72
1546 1586 1.474077 GGCAAGATCTTCAACGGCATT 59.526 47.619 4.57 0.00 0.00 3.56
1734 1810 9.435688 GTTTAAAATCATGCCCAGAAGTTTATT 57.564 29.630 0.00 0.00 0.00 1.40
1737 1813 7.066307 AGTTTAAAATCATGCCCAGAAGTTT 57.934 32.000 0.00 0.00 0.00 2.66
1743 1819 4.931002 CCACAAGTTTAAAATCATGCCCAG 59.069 41.667 0.00 0.00 0.00 4.45
1873 1970 2.733969 CAGCGCGCCAAAATGCAA 60.734 55.556 30.33 0.00 0.00 4.08
1905 2002 1.154225 GCGCTAAAATGCAGTGCGT 60.154 52.632 16.81 7.46 46.94 5.24
2027 2145 1.317613 AGAGGCACGAGCTCTATCTG 58.682 55.000 12.85 2.86 41.70 2.90
2032 2150 1.889454 CTGAAGAGGCACGAGCTCT 59.111 57.895 12.85 3.06 41.70 4.09
2033 2151 1.809209 GCTGAAGAGGCACGAGCTC 60.809 63.158 2.73 2.73 41.70 4.09
2034 2152 2.264166 GCTGAAGAGGCACGAGCT 59.736 61.111 4.48 0.00 41.70 4.09
2035 2153 2.817396 GGCTGAAGAGGCACGAGC 60.817 66.667 0.00 0.00 44.34 5.03
2051 2169 0.741221 GCTGTGGTAGAAGGCGAAGG 60.741 60.000 0.00 0.00 0.00 3.46
2052 2170 2.755929 GCTGTGGTAGAAGGCGAAG 58.244 57.895 0.00 0.00 0.00 3.79
2056 2174 3.188786 CGCGCTGTGGTAGAAGGC 61.189 66.667 5.56 0.00 0.00 4.35
2057 2175 2.509336 CCGCGCTGTGGTAGAAGG 60.509 66.667 5.56 0.00 0.00 3.46
2058 2176 2.509336 CCCGCGCTGTGGTAGAAG 60.509 66.667 5.56 0.00 0.00 2.85
2059 2177 4.752879 GCCCGCGCTGTGGTAGAA 62.753 66.667 5.56 0.00 0.00 2.10
2077 2195 4.577677 TTGCTGCCGCCACCTTGA 62.578 61.111 0.00 0.00 34.43 3.02
2078 2196 4.047059 CTTGCTGCCGCCACCTTG 62.047 66.667 0.00 0.00 34.43 3.61
2088 2206 0.736325 CAATGCTGAAGGCTTGCTGC 60.736 55.000 3.46 12.27 42.39 5.25
2089 2207 0.108804 CCAATGCTGAAGGCTTGCTG 60.109 55.000 3.46 1.99 42.39 4.41
2090 2208 1.255667 CCCAATGCTGAAGGCTTGCT 61.256 55.000 3.46 0.00 42.39 3.91
2091 2209 1.217244 CCCAATGCTGAAGGCTTGC 59.783 57.895 3.46 3.06 42.39 4.01
2092 2210 0.815734 CTCCCAATGCTGAAGGCTTG 59.184 55.000 3.46 0.00 42.39 4.01
2093 2211 0.407139 ACTCCCAATGCTGAAGGCTT 59.593 50.000 0.00 0.00 42.39 4.35
2094 2212 0.407139 AACTCCCAATGCTGAAGGCT 59.593 50.000 0.00 0.00 42.39 4.58
2095 2213 0.529378 CAACTCCCAATGCTGAAGGC 59.471 55.000 0.00 0.00 42.22 4.35
2096 2214 0.529378 GCAACTCCCAATGCTGAAGG 59.471 55.000 0.00 0.00 39.46 3.46
2097 2215 1.250328 TGCAACTCCCAATGCTGAAG 58.750 50.000 0.00 0.00 42.97 3.02
2098 2216 1.546923 CATGCAACTCCCAATGCTGAA 59.453 47.619 0.00 0.00 42.97 3.02
2099 2217 1.179152 CATGCAACTCCCAATGCTGA 58.821 50.000 0.00 0.00 42.97 4.26
2100 2218 0.174845 CCATGCAACTCCCAATGCTG 59.825 55.000 0.00 0.00 42.97 4.41
2101 2219 1.610554 GCCATGCAACTCCCAATGCT 61.611 55.000 0.00 0.00 42.97 3.79
2102 2220 1.153509 GCCATGCAACTCCCAATGC 60.154 57.895 0.00 0.00 42.86 3.56
2103 2221 1.140161 CGCCATGCAACTCCCAATG 59.860 57.895 0.00 0.00 0.00 2.82
2104 2222 2.713967 GCGCCATGCAACTCCCAAT 61.714 57.895 0.00 0.00 45.45 3.16
2105 2223 3.372730 GCGCCATGCAACTCCCAA 61.373 61.111 0.00 0.00 45.45 4.12
2114 2232 1.200020 AGAAAGTTTGTAGCGCCATGC 59.800 47.619 2.29 0.00 46.98 4.06
2115 2233 2.414559 CCAGAAAGTTTGTAGCGCCATG 60.415 50.000 2.29 0.00 0.00 3.66
2116 2234 1.812571 CCAGAAAGTTTGTAGCGCCAT 59.187 47.619 2.29 0.00 0.00 4.40
2117 2235 1.202710 TCCAGAAAGTTTGTAGCGCCA 60.203 47.619 2.29 0.00 0.00 5.69
2118 2236 1.519408 TCCAGAAAGTTTGTAGCGCC 58.481 50.000 2.29 0.00 0.00 6.53
2119 2237 3.619233 TTTCCAGAAAGTTTGTAGCGC 57.381 42.857 0.00 0.00 0.00 5.92
2120 2238 4.970003 CAGTTTTCCAGAAAGTTTGTAGCG 59.030 41.667 0.00 0.00 0.00 4.26
2121 2239 5.971792 GTCAGTTTTCCAGAAAGTTTGTAGC 59.028 40.000 0.00 0.00 0.00 3.58
2122 2240 7.321745 AGTCAGTTTTCCAGAAAGTTTGTAG 57.678 36.000 0.00 0.00 0.00 2.74
2123 2241 7.175990 ACAAGTCAGTTTTCCAGAAAGTTTGTA 59.824 33.333 0.00 0.00 0.00 2.41
2124 2242 6.015434 ACAAGTCAGTTTTCCAGAAAGTTTGT 60.015 34.615 0.00 0.00 0.00 2.83
2125 2243 6.389906 ACAAGTCAGTTTTCCAGAAAGTTTG 58.610 36.000 0.00 0.00 0.00 2.93
2126 2244 6.350194 GGACAAGTCAGTTTTCCAGAAAGTTT 60.350 38.462 2.29 0.00 0.00 2.66
2127 2245 5.125578 GGACAAGTCAGTTTTCCAGAAAGTT 59.874 40.000 2.29 0.00 0.00 2.66
2128 2246 4.640647 GGACAAGTCAGTTTTCCAGAAAGT 59.359 41.667 2.29 0.00 0.00 2.66
2129 2247 4.640201 TGGACAAGTCAGTTTTCCAGAAAG 59.360 41.667 0.00 0.00 32.45 2.62
2130 2248 4.398044 GTGGACAAGTCAGTTTTCCAGAAA 59.602 41.667 0.00 0.00 37.03 2.52
2131 2249 3.945285 GTGGACAAGTCAGTTTTCCAGAA 59.055 43.478 0.00 0.00 37.03 3.02
2132 2250 3.541632 GTGGACAAGTCAGTTTTCCAGA 58.458 45.455 0.00 0.00 37.03 3.86
2133 2251 2.287915 CGTGGACAAGTCAGTTTTCCAG 59.712 50.000 0.00 0.00 37.03 3.86
2134 2252 2.285083 CGTGGACAAGTCAGTTTTCCA 58.715 47.619 0.00 0.00 33.85 3.53
2135 2253 2.285977 ACGTGGACAAGTCAGTTTTCC 58.714 47.619 2.29 0.00 0.00 3.13
2136 2254 4.095610 CAAACGTGGACAAGTCAGTTTTC 58.904 43.478 13.80 0.00 33.99 2.29
2137 2255 4.091453 CAAACGTGGACAAGTCAGTTTT 57.909 40.909 13.80 2.13 33.99 2.43
2138 2256 3.757745 CAAACGTGGACAAGTCAGTTT 57.242 42.857 11.88 11.88 35.37 2.66
2151 2269 1.569493 CTGCGAGGTTCCAAACGTG 59.431 57.895 0.00 0.00 0.00 4.49
2152 2270 2.251642 GCTGCGAGGTTCCAAACGT 61.252 57.895 0.00 0.00 0.00 3.99
2153 2271 2.250939 TGCTGCGAGGTTCCAAACG 61.251 57.895 0.00 0.00 0.00 3.60
2154 2272 1.282875 GTGCTGCGAGGTTCCAAAC 59.717 57.895 0.00 0.00 0.00 2.93
2155 2273 0.749818 TTGTGCTGCGAGGTTCCAAA 60.750 50.000 0.00 0.00 0.00 3.28
2156 2274 0.749818 TTTGTGCTGCGAGGTTCCAA 60.750 50.000 0.00 0.00 0.00 3.53
2157 2275 1.153066 TTTGTGCTGCGAGGTTCCA 60.153 52.632 0.00 0.00 0.00 3.53
2158 2276 1.282875 GTTTGTGCTGCGAGGTTCC 59.717 57.895 0.00 0.00 0.00 3.62
2159 2277 0.593128 ATGTTTGTGCTGCGAGGTTC 59.407 50.000 0.00 0.00 0.00 3.62
2160 2278 1.890876 TATGTTTGTGCTGCGAGGTT 58.109 45.000 0.00 0.00 0.00 3.50
2161 2279 1.535462 GTTATGTTTGTGCTGCGAGGT 59.465 47.619 0.00 0.00 0.00 3.85
2162 2280 1.535028 TGTTATGTTTGTGCTGCGAGG 59.465 47.619 0.00 0.00 0.00 4.63
2163 2281 2.967459 TGTTATGTTTGTGCTGCGAG 57.033 45.000 0.00 0.00 0.00 5.03
2164 2282 3.913548 AATGTTATGTTTGTGCTGCGA 57.086 38.095 0.00 0.00 0.00 5.10
2165 2283 5.572511 ACATTAATGTTATGTTTGTGCTGCG 59.427 36.000 15.47 0.00 37.90 5.18
2166 2284 6.949578 ACATTAATGTTATGTTTGTGCTGC 57.050 33.333 15.47 0.00 37.90 5.25
2177 2295 9.649557 AGGTCCCACCGTGAACATTAATGTTAT 62.650 40.741 29.07 12.64 46.35 1.89
2178 2296 8.436374 AGGTCCCACCGTGAACATTAATGTTA 62.436 42.308 29.07 16.69 46.35 2.41
2180 2298 3.078837 GTCCCACCGTGAACATTAATGT 58.921 45.455 15.47 15.47 44.20 2.71
2181 2299 2.422127 GGTCCCACCGTGAACATTAATG 59.578 50.000 14.01 14.01 0.00 1.90
2182 2300 2.307686 AGGTCCCACCGTGAACATTAAT 59.692 45.455 0.00 0.00 44.90 1.40
2183 2301 1.700739 AGGTCCCACCGTGAACATTAA 59.299 47.619 0.00 0.00 44.90 1.40
2184 2302 1.354101 AGGTCCCACCGTGAACATTA 58.646 50.000 0.00 0.00 44.90 1.90
2185 2303 0.476771 AAGGTCCCACCGTGAACATT 59.523 50.000 0.00 0.00 44.90 2.71
2186 2304 0.476771 AAAGGTCCCACCGTGAACAT 59.523 50.000 0.00 0.00 44.90 2.71
2187 2305 0.464735 CAAAGGTCCCACCGTGAACA 60.465 55.000 0.00 0.00 44.90 3.18
2188 2306 0.179040 TCAAAGGTCCCACCGTGAAC 60.179 55.000 0.00 0.00 44.90 3.18
2189 2307 0.547075 TTCAAAGGTCCCACCGTGAA 59.453 50.000 0.00 9.53 44.90 3.18
2190 2308 0.179040 GTTCAAAGGTCCCACCGTGA 60.179 55.000 0.00 0.00 44.90 4.35
2191 2309 0.179029 AGTTCAAAGGTCCCACCGTG 60.179 55.000 0.00 0.00 44.90 4.94
2192 2310 0.108019 GAGTTCAAAGGTCCCACCGT 59.892 55.000 0.00 0.00 44.90 4.83
2193 2311 0.949105 CGAGTTCAAAGGTCCCACCG 60.949 60.000 0.00 0.00 44.90 4.94
2194 2312 1.235281 GCGAGTTCAAAGGTCCCACC 61.235 60.000 0.00 0.00 38.99 4.61
2195 2313 1.235281 GGCGAGTTCAAAGGTCCCAC 61.235 60.000 0.00 0.00 0.00 4.61
2196 2314 1.072505 GGCGAGTTCAAAGGTCCCA 59.927 57.895 0.00 0.00 0.00 4.37
2197 2315 1.072505 TGGCGAGTTCAAAGGTCCC 59.927 57.895 0.00 0.00 0.00 4.46
2198 2316 0.250338 AGTGGCGAGTTCAAAGGTCC 60.250 55.000 0.00 0.00 0.00 4.46
2199 2317 0.868406 CAGTGGCGAGTTCAAAGGTC 59.132 55.000 0.00 0.00 0.00 3.85
2200 2318 1.166531 GCAGTGGCGAGTTCAAAGGT 61.167 55.000 0.00 0.00 0.00 3.50
2201 2319 1.576421 GCAGTGGCGAGTTCAAAGG 59.424 57.895 0.00 0.00 0.00 3.11
2206 2324 3.074673 ATGCAAAGCAGTGGCGAGTTC 62.075 52.381 0.00 0.00 43.65 3.01
2207 2325 1.174712 ATGCAAAGCAGTGGCGAGTT 61.175 50.000 0.00 0.00 43.65 3.01
2208 2326 0.321564 TATGCAAAGCAGTGGCGAGT 60.322 50.000 0.00 0.00 43.65 4.18
2209 2327 0.097674 GTATGCAAAGCAGTGGCGAG 59.902 55.000 0.00 0.00 43.65 5.03
2210 2328 0.321564 AGTATGCAAAGCAGTGGCGA 60.322 50.000 0.00 0.00 43.65 5.54
2211 2329 1.062587 GTAGTATGCAAAGCAGTGGCG 59.937 52.381 0.00 0.00 43.65 5.69
2212 2330 2.096496 CAGTAGTATGCAAAGCAGTGGC 59.904 50.000 0.00 0.00 43.65 5.01
2213 2331 2.096496 GCAGTAGTATGCAAAGCAGTGG 59.904 50.000 0.00 0.00 43.65 4.00
2214 2332 3.395858 GCAGTAGTATGCAAAGCAGTG 57.604 47.619 0.00 0.00 43.65 3.66
2223 2341 4.288670 TCGTAGAGTTGCAGTAGTATGC 57.711 45.455 0.00 0.00 46.68 3.14
2224 2342 5.744345 CCTTTCGTAGAGTTGCAGTAGTATG 59.256 44.000 0.00 0.00 38.43 2.39
2225 2343 5.651139 TCCTTTCGTAGAGTTGCAGTAGTAT 59.349 40.000 0.00 0.00 38.43 2.12
2226 2344 5.005740 TCCTTTCGTAGAGTTGCAGTAGTA 58.994 41.667 0.00 0.00 38.43 1.82
2227 2345 3.825014 TCCTTTCGTAGAGTTGCAGTAGT 59.175 43.478 0.00 0.00 38.43 2.73
2228 2346 4.167268 GTCCTTTCGTAGAGTTGCAGTAG 58.833 47.826 0.00 0.00 38.43 2.57
2229 2347 3.570975 TGTCCTTTCGTAGAGTTGCAGTA 59.429 43.478 0.00 0.00 38.43 2.74
2230 2348 2.364324 TGTCCTTTCGTAGAGTTGCAGT 59.636 45.455 0.00 0.00 38.43 4.40
2231 2349 3.026630 TGTCCTTTCGTAGAGTTGCAG 57.973 47.619 0.00 0.00 38.43 4.41
2232 2350 3.181469 ACTTGTCCTTTCGTAGAGTTGCA 60.181 43.478 0.00 0.00 38.43 4.08
2233 2351 3.391049 ACTTGTCCTTTCGTAGAGTTGC 58.609 45.455 0.00 0.00 38.43 4.17
2234 2352 5.986004 AAACTTGTCCTTTCGTAGAGTTG 57.014 39.130 0.00 0.00 38.43 3.16
2235 2353 7.270779 ACTAAAACTTGTCCTTTCGTAGAGTT 58.729 34.615 0.00 0.00 38.43 3.01
2236 2354 6.814043 ACTAAAACTTGTCCTTTCGTAGAGT 58.186 36.000 0.00 0.00 38.43 3.24
2237 2355 7.710766 AACTAAAACTTGTCCTTTCGTAGAG 57.289 36.000 0.00 0.00 38.43 2.43
2238 2356 7.550196 ACAAACTAAAACTTGTCCTTTCGTAGA 59.450 33.333 0.00 0.00 29.80 2.59
2239 2357 7.691158 ACAAACTAAAACTTGTCCTTTCGTAG 58.309 34.615 0.00 0.00 29.80 3.51
2240 2358 7.614124 ACAAACTAAAACTTGTCCTTTCGTA 57.386 32.000 0.00 0.00 29.80 3.43
2241 2359 6.505044 ACAAACTAAAACTTGTCCTTTCGT 57.495 33.333 0.00 0.00 29.80 3.85
2242 2360 7.024768 TCAACAAACTAAAACTTGTCCTTTCG 58.975 34.615 0.00 0.00 34.71 3.46
2243 2361 8.751302 TTCAACAAACTAAAACTTGTCCTTTC 57.249 30.769 0.00 0.00 34.71 2.62
2244 2362 9.719355 AATTCAACAAACTAAAACTTGTCCTTT 57.281 25.926 0.00 0.00 34.71 3.11
2245 2363 9.719355 AAATTCAACAAACTAAAACTTGTCCTT 57.281 25.926 0.00 0.00 34.71 3.36
2246 2364 9.719355 AAAATTCAACAAACTAAAACTTGTCCT 57.281 25.926 0.00 0.00 34.71 3.85
2292 2410 8.135529 GCTTTCAACTACAAGTTCAAGGTTTAT 58.864 33.333 9.00 0.00 36.03 1.40
2293 2411 7.338449 AGCTTTCAACTACAAGTTCAAGGTTTA 59.662 33.333 6.95 0.00 36.03 2.01
2294 2412 6.152831 AGCTTTCAACTACAAGTTCAAGGTTT 59.847 34.615 6.95 0.00 36.03 3.27
2295 2413 5.652452 AGCTTTCAACTACAAGTTCAAGGTT 59.348 36.000 6.95 0.00 36.03 3.50
2296 2414 5.193679 AGCTTTCAACTACAAGTTCAAGGT 58.806 37.500 6.95 6.95 36.03 3.50
2297 2415 5.757850 AGCTTTCAACTACAAGTTCAAGG 57.242 39.130 9.00 0.00 36.03 3.61
2298 2416 9.387123 GATTTAGCTTTCAACTACAAGTTCAAG 57.613 33.333 0.00 0.00 36.03 3.02
2299 2417 8.898761 TGATTTAGCTTTCAACTACAAGTTCAA 58.101 29.630 0.00 0.00 36.03 2.69
2300 2418 8.445275 TGATTTAGCTTTCAACTACAAGTTCA 57.555 30.769 0.00 0.00 36.03 3.18
2301 2419 9.730420 TTTGATTTAGCTTTCAACTACAAGTTC 57.270 29.630 0.00 0.00 36.03 3.01
2302 2420 9.516314 GTTTGATTTAGCTTTCAACTACAAGTT 57.484 29.630 0.00 0.00 39.39 2.66
2303 2421 8.135529 GGTTTGATTTAGCTTTCAACTACAAGT 58.864 33.333 0.00 0.00 31.87 3.16
2304 2422 8.352942 AGGTTTGATTTAGCTTTCAACTACAAG 58.647 33.333 0.00 0.00 31.87 3.16
2305 2423 8.232913 AGGTTTGATTTAGCTTTCAACTACAA 57.767 30.769 0.00 0.00 31.87 2.41
2306 2424 7.500892 TGAGGTTTGATTTAGCTTTCAACTACA 59.499 33.333 0.00 0.00 31.87 2.74
2307 2425 7.871853 TGAGGTTTGATTTAGCTTTCAACTAC 58.128 34.615 0.00 0.00 31.87 2.73
2308 2426 8.458573 TTGAGGTTTGATTTAGCTTTCAACTA 57.541 30.769 0.00 0.00 31.87 2.24
2309 2427 6.959639 TGAGGTTTGATTTAGCTTTCAACT 57.040 33.333 0.00 0.00 31.87 3.16
2310 2428 7.706607 AGTTTGAGGTTTGATTTAGCTTTCAAC 59.293 33.333 0.00 0.00 31.87 3.18
2311 2429 7.781056 AGTTTGAGGTTTGATTTAGCTTTCAA 58.219 30.769 0.00 0.00 0.00 2.69
2312 2430 7.346751 AGTTTGAGGTTTGATTTAGCTTTCA 57.653 32.000 0.00 0.00 0.00 2.69
2313 2431 8.648557 AAAGTTTGAGGTTTGATTTAGCTTTC 57.351 30.769 0.00 0.00 0.00 2.62
2319 2437 9.990360 GGGATTAAAAGTTTGAGGTTTGATTTA 57.010 29.630 0.00 0.00 0.00 1.40
2320 2438 8.713971 AGGGATTAAAAGTTTGAGGTTTGATTT 58.286 29.630 0.00 0.00 0.00 2.17
2321 2439 8.150296 CAGGGATTAAAAGTTTGAGGTTTGATT 58.850 33.333 0.00 0.00 0.00 2.57
2322 2440 7.508977 TCAGGGATTAAAAGTTTGAGGTTTGAT 59.491 33.333 0.00 0.00 0.00 2.57
2323 2441 6.836527 TCAGGGATTAAAAGTTTGAGGTTTGA 59.163 34.615 0.00 0.00 0.00 2.69
2324 2442 7.049799 TCAGGGATTAAAAGTTTGAGGTTTG 57.950 36.000 0.00 0.00 0.00 2.93
2325 2443 7.669089 TTCAGGGATTAAAAGTTTGAGGTTT 57.331 32.000 0.00 0.00 0.00 3.27
2326 2444 7.669089 TTTCAGGGATTAAAAGTTTGAGGTT 57.331 32.000 0.00 0.00 0.00 3.50
2327 2445 7.508977 TCATTTCAGGGATTAAAAGTTTGAGGT 59.491 33.333 0.00 0.00 0.00 3.85
2328 2446 7.895759 TCATTTCAGGGATTAAAAGTTTGAGG 58.104 34.615 0.00 0.00 0.00 3.86
2329 2447 7.543520 GCTCATTTCAGGGATTAAAAGTTTGAG 59.456 37.037 0.00 0.00 0.00 3.02
2330 2448 7.015098 TGCTCATTTCAGGGATTAAAAGTTTGA 59.985 33.333 0.00 0.00 0.00 2.69
2331 2449 7.116805 GTGCTCATTTCAGGGATTAAAAGTTTG 59.883 37.037 0.00 0.00 0.00 2.93
2332 2450 7.154656 GTGCTCATTTCAGGGATTAAAAGTTT 58.845 34.615 0.00 0.00 0.00 2.66
2333 2451 6.267471 TGTGCTCATTTCAGGGATTAAAAGTT 59.733 34.615 0.00 0.00 0.00 2.66
2334 2452 5.774690 TGTGCTCATTTCAGGGATTAAAAGT 59.225 36.000 0.00 0.00 0.00 2.66
2335 2453 6.095377 GTGTGCTCATTTCAGGGATTAAAAG 58.905 40.000 0.00 0.00 0.00 2.27
2336 2454 5.047377 GGTGTGCTCATTTCAGGGATTAAAA 60.047 40.000 0.00 0.00 0.00 1.52
2337 2455 4.462483 GGTGTGCTCATTTCAGGGATTAAA 59.538 41.667 0.00 0.00 0.00 1.52
2338 2456 4.016444 GGTGTGCTCATTTCAGGGATTAA 58.984 43.478 0.00 0.00 0.00 1.40
2339 2457 3.620488 GGTGTGCTCATTTCAGGGATTA 58.380 45.455 0.00 0.00 0.00 1.75
2340 2458 2.450476 GGTGTGCTCATTTCAGGGATT 58.550 47.619 0.00 0.00 0.00 3.01
2341 2459 1.679944 CGGTGTGCTCATTTCAGGGAT 60.680 52.381 0.00 0.00 0.00 3.85
2342 2460 0.321564 CGGTGTGCTCATTTCAGGGA 60.322 55.000 0.00 0.00 0.00 4.20
2343 2461 0.321564 TCGGTGTGCTCATTTCAGGG 60.322 55.000 0.00 0.00 0.00 4.45
2344 2462 1.742761 ATCGGTGTGCTCATTTCAGG 58.257 50.000 0.00 0.00 0.00 3.86
2345 2463 2.096496 GGAATCGGTGTGCTCATTTCAG 59.904 50.000 0.00 0.00 0.00 3.02
2346 2464 2.083774 GGAATCGGTGTGCTCATTTCA 58.916 47.619 0.00 0.00 0.00 2.69
2347 2465 1.062587 CGGAATCGGTGTGCTCATTTC 59.937 52.381 0.00 0.00 0.00 2.17
2348 2466 1.086696 CGGAATCGGTGTGCTCATTT 58.913 50.000 0.00 0.00 0.00 2.32
2349 2467 2.767536 CGGAATCGGTGTGCTCATT 58.232 52.632 0.00 0.00 0.00 2.57
2350 2468 4.521075 CGGAATCGGTGTGCTCAT 57.479 55.556 0.00 0.00 0.00 2.90
2368 2486 3.154827 TCCCATTGAAAACAGGGAGAC 57.845 47.619 0.00 0.00 45.48 3.36
2372 2490 3.367292 CGACAATCCCATTGAAAACAGGG 60.367 47.826 3.24 0.00 43.83 4.45
2373 2491 3.367292 CCGACAATCCCATTGAAAACAGG 60.367 47.826 3.24 0.00 42.83 4.00
2374 2492 3.836949 CCGACAATCCCATTGAAAACAG 58.163 45.455 3.24 0.00 42.83 3.16
2375 2493 2.029470 GCCGACAATCCCATTGAAAACA 60.029 45.455 3.24 0.00 42.83 2.83
2376 2494 2.029470 TGCCGACAATCCCATTGAAAAC 60.029 45.455 3.24 0.00 42.83 2.43
2377 2495 2.230992 CTGCCGACAATCCCATTGAAAA 59.769 45.455 3.24 0.00 42.83 2.29
2378 2496 1.818060 CTGCCGACAATCCCATTGAAA 59.182 47.619 3.24 0.00 42.83 2.69
2379 2497 1.462616 CTGCCGACAATCCCATTGAA 58.537 50.000 3.24 0.00 42.83 2.69
2380 2498 0.394216 CCTGCCGACAATCCCATTGA 60.394 55.000 3.24 0.00 42.83 2.57
2381 2499 0.680921 ACCTGCCGACAATCCCATTG 60.681 55.000 0.00 0.00 45.59 2.82
2382 2500 0.394352 GACCTGCCGACAATCCCATT 60.394 55.000 0.00 0.00 0.00 3.16
2383 2501 1.224592 GACCTGCCGACAATCCCAT 59.775 57.895 0.00 0.00 0.00 4.00
2384 2502 1.899437 GAGACCTGCCGACAATCCCA 61.899 60.000 0.00 0.00 0.00 4.37
2385 2503 1.153349 GAGACCTGCCGACAATCCC 60.153 63.158 0.00 0.00 0.00 3.85
2386 2504 1.519455 CGAGACCTGCCGACAATCC 60.519 63.158 0.00 0.00 0.00 3.01
2387 2505 1.519455 CCGAGACCTGCCGACAATC 60.519 63.158 0.00 0.00 0.00 2.67
2388 2506 1.330655 ATCCGAGACCTGCCGACAAT 61.331 55.000 0.00 0.00 0.00 2.71
2389 2507 1.982395 ATCCGAGACCTGCCGACAA 60.982 57.895 0.00 0.00 0.00 3.18
2390 2508 2.362503 ATCCGAGACCTGCCGACA 60.363 61.111 0.00 0.00 0.00 4.35
2391 2509 2.105128 CATCCGAGACCTGCCGAC 59.895 66.667 0.00 0.00 0.00 4.79
2392 2510 3.838271 GCATCCGAGACCTGCCGA 61.838 66.667 0.00 0.00 0.00 5.54
2393 2511 4.147449 TGCATCCGAGACCTGCCG 62.147 66.667 0.00 0.00 35.02 5.69
2394 2512 2.202987 CTGCATCCGAGACCTGCC 60.203 66.667 0.00 0.00 35.02 4.85
2395 2513 2.894387 GCTGCATCCGAGACCTGC 60.894 66.667 0.00 0.00 36.45 4.85
2396 2514 2.202987 GGCTGCATCCGAGACCTG 60.203 66.667 0.50 0.00 0.00 4.00
2397 2515 3.474570 GGGCTGCATCCGAGACCT 61.475 66.667 0.50 0.00 35.45 3.85
2404 2522 4.838152 TCGCTTCGGGCTGCATCC 62.838 66.667 0.50 0.00 39.13 3.51
2405 2523 3.567797 GTCGCTTCGGGCTGCATC 61.568 66.667 0.50 0.00 39.13 3.91
2406 2524 4.087892 AGTCGCTTCGGGCTGCAT 62.088 61.111 0.50 0.00 39.13 3.96
2431 2549 2.819595 CACGATTCGCCTGGTGGG 60.820 66.667 7.51 0.00 38.36 4.61
2432 2550 3.499737 GCACGATTCGCCTGGTGG 61.500 66.667 7.51 0.00 0.00 4.61
2433 2551 1.577328 AAAGCACGATTCGCCTGGTG 61.577 55.000 5.86 0.00 0.00 4.17
2434 2552 0.889186 AAAAGCACGATTCGCCTGGT 60.889 50.000 5.86 0.57 0.00 4.00
2435 2553 0.179189 GAAAAGCACGATTCGCCTGG 60.179 55.000 5.86 0.00 0.00 4.45
2436 2554 0.179189 GGAAAAGCACGATTCGCCTG 60.179 55.000 5.86 0.00 0.00 4.85
2437 2555 0.321653 AGGAAAAGCACGATTCGCCT 60.322 50.000 5.86 0.00 0.00 5.52
2438 2556 0.521735 AAGGAAAAGCACGATTCGCC 59.478 50.000 5.86 0.00 0.00 5.54
2439 2557 2.331809 AAAGGAAAAGCACGATTCGC 57.668 45.000 5.86 0.00 0.00 4.70
2440 2558 4.041723 ACAAAAAGGAAAAGCACGATTCG 58.958 39.130 4.14 4.14 0.00 3.34
2441 2559 7.458038 TTTACAAAAAGGAAAAGCACGATTC 57.542 32.000 0.00 0.00 0.00 2.52
2442 2560 7.835634 TTTTACAAAAAGGAAAAGCACGATT 57.164 28.000 0.00 0.00 0.00 3.34
2443 2561 7.463469 CTTTTACAAAAAGGAAAAGCACGAT 57.537 32.000 4.55 0.00 34.44 3.73
2444 2562 6.879188 CTTTTACAAAAAGGAAAAGCACGA 57.121 33.333 4.55 0.00 34.44 4.35
2463 2581 9.974980 TTGAGTCTAATTTTTAAATCGCCTTTT 57.025 25.926 0.00 0.00 0.00 2.27
2464 2582 9.626045 CTTGAGTCTAATTTTTAAATCGCCTTT 57.374 29.630 0.00 0.00 0.00 3.11
2465 2583 8.244113 CCTTGAGTCTAATTTTTAAATCGCCTT 58.756 33.333 0.00 0.00 0.00 4.35
2466 2584 7.148069 CCCTTGAGTCTAATTTTTAAATCGCCT 60.148 37.037 0.00 0.00 0.00 5.52
2467 2585 6.972901 CCCTTGAGTCTAATTTTTAAATCGCC 59.027 38.462 0.00 0.00 0.00 5.54
2468 2586 7.758495 TCCCTTGAGTCTAATTTTTAAATCGC 58.242 34.615 0.00 0.00 0.00 4.58
2472 2590 9.509956 TCGATTCCCTTGAGTCTAATTTTTAAA 57.490 29.630 0.00 0.00 0.00 1.52
2473 2591 9.509956 TTCGATTCCCTTGAGTCTAATTTTTAA 57.490 29.630 0.00 0.00 0.00 1.52
2474 2592 8.943002 GTTCGATTCCCTTGAGTCTAATTTTTA 58.057 33.333 0.00 0.00 0.00 1.52
2475 2593 7.665974 AGTTCGATTCCCTTGAGTCTAATTTTT 59.334 33.333 0.00 0.00 0.00 1.94
2476 2594 7.168905 AGTTCGATTCCCTTGAGTCTAATTTT 58.831 34.615 0.00 0.00 0.00 1.82
2477 2595 6.712276 AGTTCGATTCCCTTGAGTCTAATTT 58.288 36.000 0.00 0.00 0.00 1.82
2478 2596 6.301169 AGTTCGATTCCCTTGAGTCTAATT 57.699 37.500 0.00 0.00 0.00 1.40
2479 2597 5.941555 AGTTCGATTCCCTTGAGTCTAAT 57.058 39.130 0.00 0.00 0.00 1.73
2480 2598 5.479306 CAAGTTCGATTCCCTTGAGTCTAA 58.521 41.667 8.23 0.00 38.23 2.10
2481 2599 4.081642 CCAAGTTCGATTCCCTTGAGTCTA 60.082 45.833 13.17 0.00 38.23 2.59
2482 2600 3.307059 CCAAGTTCGATTCCCTTGAGTCT 60.307 47.826 13.17 0.00 38.23 3.24
2483 2601 3.003480 CCAAGTTCGATTCCCTTGAGTC 58.997 50.000 13.17 0.00 38.23 3.36
2484 2602 2.290323 CCCAAGTTCGATTCCCTTGAGT 60.290 50.000 13.17 0.00 38.23 3.41
2485 2603 2.290323 ACCCAAGTTCGATTCCCTTGAG 60.290 50.000 13.17 5.77 38.23 3.02
2486 2604 1.702957 ACCCAAGTTCGATTCCCTTGA 59.297 47.619 13.17 0.00 38.23 3.02
2487 2605 1.812571 CACCCAAGTTCGATTCCCTTG 59.187 52.381 0.00 0.00 36.26 3.61
2488 2606 1.886655 GCACCCAAGTTCGATTCCCTT 60.887 52.381 0.00 0.00 0.00 3.95
2489 2607 0.322546 GCACCCAAGTTCGATTCCCT 60.323 55.000 0.00 0.00 0.00 4.20
2490 2608 0.322546 AGCACCCAAGTTCGATTCCC 60.323 55.000 0.00 0.00 0.00 3.97
2491 2609 0.804989 CAGCACCCAAGTTCGATTCC 59.195 55.000 0.00 0.00 0.00 3.01
2492 2610 0.804989 CCAGCACCCAAGTTCGATTC 59.195 55.000 0.00 0.00 0.00 2.52
2493 2611 0.110486 ACCAGCACCCAAGTTCGATT 59.890 50.000 0.00 0.00 0.00 3.34
2494 2612 0.606401 CACCAGCACCCAAGTTCGAT 60.606 55.000 0.00 0.00 0.00 3.59
2495 2613 1.227823 CACCAGCACCCAAGTTCGA 60.228 57.895 0.00 0.00 0.00 3.71
2496 2614 2.908073 GCACCAGCACCCAAGTTCG 61.908 63.158 0.00 0.00 41.58 3.95
2497 2615 1.109323 AAGCACCAGCACCCAAGTTC 61.109 55.000 0.00 0.00 45.49 3.01
2498 2616 1.076044 AAGCACCAGCACCCAAGTT 60.076 52.632 0.00 0.00 45.49 2.66
2499 2617 1.529244 GAAGCACCAGCACCCAAGT 60.529 57.895 0.00 0.00 45.49 3.16
2500 2618 1.108727 TTGAAGCACCAGCACCCAAG 61.109 55.000 0.00 0.00 45.49 3.61
2501 2619 0.685785 TTTGAAGCACCAGCACCCAA 60.686 50.000 0.00 0.00 45.49 4.12
2502 2620 0.685785 TTTTGAAGCACCAGCACCCA 60.686 50.000 0.00 0.00 45.49 4.51
2503 2621 0.463620 TTTTTGAAGCACCAGCACCC 59.536 50.000 0.00 0.00 45.49 4.61
2504 2622 1.570813 GTTTTTGAAGCACCAGCACC 58.429 50.000 0.00 0.00 45.49 5.01
2505 2623 1.570813 GGTTTTTGAAGCACCAGCAC 58.429 50.000 0.00 0.00 45.49 4.40
2506 2624 0.463620 GGGTTTTTGAAGCACCAGCA 59.536 50.000 0.00 0.00 45.49 4.41
2507 2625 0.752658 AGGGTTTTTGAAGCACCAGC 59.247 50.000 0.00 0.00 42.56 4.85
2508 2626 1.341209 GGAGGGTTTTTGAAGCACCAG 59.659 52.381 0.00 0.00 31.50 4.00
2509 2627 1.408969 GGAGGGTTTTTGAAGCACCA 58.591 50.000 0.00 0.00 31.50 4.17
2510 2628 0.679505 GGGAGGGTTTTTGAAGCACC 59.320 55.000 0.00 0.00 0.00 5.01
2511 2629 0.313987 CGGGAGGGTTTTTGAAGCAC 59.686 55.000 0.00 0.00 0.00 4.40
2512 2630 1.460273 GCGGGAGGGTTTTTGAAGCA 61.460 55.000 0.00 0.00 0.00 3.91
2513 2631 1.179174 AGCGGGAGGGTTTTTGAAGC 61.179 55.000 0.00 0.00 0.00 3.86
2514 2632 2.084546 CTAGCGGGAGGGTTTTTGAAG 58.915 52.381 0.00 0.00 0.00 3.02
2515 2633 1.884928 GCTAGCGGGAGGGTTTTTGAA 60.885 52.381 0.00 0.00 0.00 2.69
2516 2634 0.322187 GCTAGCGGGAGGGTTTTTGA 60.322 55.000 0.00 0.00 0.00 2.69
2517 2635 1.313091 GGCTAGCGGGAGGGTTTTTG 61.313 60.000 9.00 0.00 0.00 2.44
2518 2636 1.001269 GGCTAGCGGGAGGGTTTTT 60.001 57.895 9.00 0.00 0.00 1.94
2519 2637 2.198304 CTGGCTAGCGGGAGGGTTTT 62.198 60.000 9.00 0.00 0.00 2.43
2520 2638 2.609610 TGGCTAGCGGGAGGGTTT 60.610 61.111 9.00 0.00 0.00 3.27
2521 2639 3.083997 CTGGCTAGCGGGAGGGTT 61.084 66.667 9.00 0.00 0.00 4.11
2522 2640 4.400251 ACTGGCTAGCGGGAGGGT 62.400 66.667 9.00 0.00 0.00 4.34
2523 2641 2.642183 TAGACTGGCTAGCGGGAGGG 62.642 65.000 9.00 0.00 0.00 4.30
2524 2642 0.755698 TTAGACTGGCTAGCGGGAGG 60.756 60.000 9.00 0.00 0.00 4.30
2525 2643 0.386113 GTTAGACTGGCTAGCGGGAG 59.614 60.000 9.00 7.05 0.00 4.30
2526 2644 1.041447 GGTTAGACTGGCTAGCGGGA 61.041 60.000 9.00 0.00 31.67 5.14
2527 2645 1.442148 GGTTAGACTGGCTAGCGGG 59.558 63.158 9.00 6.33 31.67 6.13
2528 2646 1.065928 CGGTTAGACTGGCTAGCGG 59.934 63.158 9.00 6.71 31.67 5.52
2529 2647 0.248539 GTCGGTTAGACTGGCTAGCG 60.249 60.000 9.00 0.00 46.13 4.26
2530 2648 3.644774 GTCGGTTAGACTGGCTAGC 57.355 57.895 6.04 6.04 46.13 3.42
2536 2654 6.298562 AAACTGATTGTCGTCGGTTAGACTG 61.299 44.000 1.91 0.00 44.69 3.51
2537 2655 4.261909 AAACTGATTGTCGTCGGTTAGACT 60.262 41.667 1.91 0.00 44.69 3.24
2538 2656 3.213249 ACTGATTGTCGTCGGTTAGAC 57.787 47.619 0.00 0.00 46.16 2.59
2539 2657 3.928727 AACTGATTGTCGTCGGTTAGA 57.071 42.857 0.00 0.00 43.88 2.10
2540 2658 4.985044 AAAACTGATTGTCGTCGGTTAG 57.015 40.909 1.91 0.00 44.69 2.34
2541 2659 6.841443 TTTAAAACTGATTGTCGTCGGTTA 57.159 33.333 1.91 0.00 44.69 2.85
2542 2660 5.738118 TTTAAAACTGATTGTCGTCGGTT 57.262 34.783 0.00 0.00 46.77 4.44
2543 2661 5.467399 TCATTTAAAACTGATTGTCGTCGGT 59.533 36.000 0.00 0.00 39.34 4.69
2544 2662 5.922546 TCATTTAAAACTGATTGTCGTCGG 58.077 37.500 0.00 0.00 0.00 4.79
2545 2663 9.199184 CTTATCATTTAAAACTGATTGTCGTCG 57.801 33.333 9.07 0.00 34.14 5.12
2546 2664 9.000018 GCTTATCATTTAAAACTGATTGTCGTC 58.000 33.333 9.07 0.00 34.14 4.20
2547 2665 8.511321 TGCTTATCATTTAAAACTGATTGTCGT 58.489 29.630 9.07 0.00 34.14 4.34
2548 2666 8.788813 GTGCTTATCATTTAAAACTGATTGTCG 58.211 33.333 9.07 0.04 34.14 4.35
2549 2667 8.788813 CGTGCTTATCATTTAAAACTGATTGTC 58.211 33.333 9.07 1.80 34.14 3.18
2550 2668 8.511321 TCGTGCTTATCATTTAAAACTGATTGT 58.489 29.630 9.07 0.00 34.14 2.71
2551 2669 8.894409 TCGTGCTTATCATTTAAAACTGATTG 57.106 30.769 9.07 5.39 34.14 2.67
2552 2670 9.906660 TTTCGTGCTTATCATTTAAAACTGATT 57.093 25.926 9.07 0.00 34.14 2.57
2553 2671 9.341899 GTTTCGTGCTTATCATTTAAAACTGAT 57.658 29.630 8.85 8.85 36.19 2.90
2554 2672 8.564574 AGTTTCGTGCTTATCATTTAAAACTGA 58.435 29.630 0.00 0.00 0.00 3.41
2555 2673 8.728088 AGTTTCGTGCTTATCATTTAAAACTG 57.272 30.769 0.00 0.00 0.00 3.16
2565 2683 9.157104 TGTGATTAAATAGTTTCGTGCTTATCA 57.843 29.630 0.00 0.00 0.00 2.15
2569 2687 8.395633 GGTATGTGATTAAATAGTTTCGTGCTT 58.604 33.333 0.00 0.00 0.00 3.91
2570 2688 7.551262 TGGTATGTGATTAAATAGTTTCGTGCT 59.449 33.333 0.00 0.00 0.00 4.40
2571 2689 7.638683 GTGGTATGTGATTAAATAGTTTCGTGC 59.361 37.037 0.00 0.00 0.00 5.34
2572 2690 8.661257 TGTGGTATGTGATTAAATAGTTTCGTG 58.339 33.333 0.00 0.00 0.00 4.35
2573 2691 8.780846 TGTGGTATGTGATTAAATAGTTTCGT 57.219 30.769 0.00 0.00 0.00 3.85
2574 2692 9.485591 GTTGTGGTATGTGATTAAATAGTTTCG 57.514 33.333 0.00 0.00 0.00 3.46
2578 2696 9.461312 ACATGTTGTGGTATGTGATTAAATAGT 57.539 29.630 0.00 0.00 36.26 2.12
2581 2699 9.995003 AAAACATGTTGTGGTATGTGATTAAAT 57.005 25.926 12.82 0.00 37.57 1.40
2582 2700 9.823647 AAAAACATGTTGTGGTATGTGATTAAA 57.176 25.926 12.82 0.00 37.57 1.52
2654 2772 9.849166 ACAAAGAAATTTTGAAAACGAGAAGTA 57.151 25.926 6.63 0.00 33.83 2.24
2655 2773 8.647226 CACAAAGAAATTTTGAAAACGAGAAGT 58.353 29.630 6.63 0.00 33.83 3.01
2656 2774 8.647226 ACACAAAGAAATTTTGAAAACGAGAAG 58.353 29.630 6.63 0.00 33.83 2.85
2657 2775 8.527567 ACACAAAGAAATTTTGAAAACGAGAA 57.472 26.923 6.63 0.00 33.83 2.87
2658 2776 8.527567 AACACAAAGAAATTTTGAAAACGAGA 57.472 26.923 6.63 0.00 33.83 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.