Multiple sequence alignment - TraesCS6A01G344500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G344500 chr6A 100.000 2461 0 0 423 2883 578664846 578662386 0.000000e+00 4545
1 TraesCS6A01G344500 chr6A 92.105 114 4 2 457 570 532982105 532982213 3.850000e-34 156
2 TraesCS6A01G344500 chr6A 100.000 75 0 0 1 75 578665268 578665194 3.870000e-29 139
3 TraesCS6A01G344500 chr3B 94.989 918 43 2 504 1421 137275288 137276202 0.000000e+00 1437
4 TraesCS6A01G344500 chr3B 93.524 525 32 2 2360 2883 693815037 693814514 0.000000e+00 780
5 TraesCS6A01G344500 chr3B 86.434 516 33 7 1545 2042 510877445 510877941 5.470000e-147 531
6 TraesCS6A01G344500 chr3B 89.189 111 12 0 2201 2311 483422766 483422876 3.870000e-29 139
7 TraesCS6A01G344500 chr3B 87.719 114 9 2 461 574 693554908 693555016 8.380000e-26 128
8 TraesCS6A01G344500 chr7B 92.857 910 55 3 512 1421 65082766 65083665 0.000000e+00 1312
9 TraesCS6A01G344500 chr7B 86.372 521 30 11 1545 2045 604762014 604761515 5.470000e-147 531
10 TraesCS6A01G344500 chr7B 88.318 214 19 6 1376 1586 665414777 665414987 4.770000e-63 252
11 TraesCS6A01G344500 chr7B 96.212 132 5 0 1747 1878 665416343 665416474 1.740000e-52 217
12 TraesCS6A01G344500 chr7B 85.976 164 15 1 2201 2364 27214796 27214951 4.940000e-38 169
13 TraesCS6A01G344500 chr1A 93.857 814 49 1 608 1421 220290675 220291487 0.000000e+00 1225
14 TraesCS6A01G344500 chr1A 93.333 75 5 0 1 75 380400795 380400869 8.440000e-21 111
15 TraesCS6A01G344500 chr1A 93.333 75 5 0 1 75 531840068 531839994 8.440000e-21 111
16 TraesCS6A01G344500 chr1A 93.939 66 2 1 423 486 220290260 220290325 6.570000e-17 99
17 TraesCS6A01G344500 chr7A 94.918 728 32 3 2158 2883 602273488 602272764 0.000000e+00 1134
18 TraesCS6A01G344500 chr7A 92.593 513 26 9 918 1420 602274892 602274382 0.000000e+00 726
19 TraesCS6A01G344500 chr7A 91.931 347 27 1 577 923 602275266 602274921 4.320000e-133 484
20 TraesCS6A01G344500 chr6B 93.544 728 44 3 2158 2883 455775752 455776478 0.000000e+00 1081
21 TraesCS6A01G344500 chr6B 91.621 728 42 3 2158 2883 44523347 44524057 0.000000e+00 989
22 TraesCS6A01G344500 chr6B 87.500 120 10 3 461 580 501076298 501076184 1.800000e-27 134
23 TraesCS6A01G344500 chr6B 86.667 120 11 2 461 580 636720754 636720640 8.380000e-26 128
24 TraesCS6A01G344500 chr3D 93.014 730 39 11 2158 2883 134544282 134543561 0.000000e+00 1055
25 TraesCS6A01G344500 chr3D 90.374 374 17 3 1503 1876 424686587 424686941 9.350000e-130 473
26 TraesCS6A01G344500 chr3D 95.946 74 3 0 1 74 529250931 529250858 1.400000e-23 121
27 TraesCS6A01G344500 chr3D 93.421 76 4 1 1 75 426388523 426388448 8.440000e-21 111
28 TraesCS6A01G344500 chr2A 91.803 732 43 16 2158 2883 37683840 37683120 0.000000e+00 1003
29 TraesCS6A01G344500 chr2A 87.500 120 9 3 461 580 689217461 689217348 1.800000e-27 134
30 TraesCS6A01G344500 chr2A 90.099 101 10 0 2207 2307 178935039 178934939 6.480000e-27 132
31 TraesCS6A01G344500 chr5B 94.767 516 26 1 2158 2672 25707995 25708510 0.000000e+00 802
32 TraesCS6A01G344500 chr5B 89.796 441 26 5 1436 1876 533879190 533878769 5.430000e-152 547
33 TraesCS6A01G344500 chr5B 86.127 519 35 11 1545 2045 65033282 65032783 2.540000e-145 525
34 TraesCS6A01G344500 chr6D 92.060 466 26 10 2421 2883 59756296 59755839 0.000000e+00 645
35 TraesCS6A01G344500 chr6D 95.087 346 16 1 1030 1374 202935637 202935292 7.030000e-151 544
36 TraesCS6A01G344500 chr6D 96.356 247 9 0 1503 1749 202935252 202935006 9.620000e-110 407
37 TraesCS6A01G344500 chr6D 95.098 102 5 0 2042 2143 251261924 251261823 8.270000e-36 161
38 TraesCS6A01G344500 chr1D 91.416 466 28 11 2421 2883 369481797 369481341 1.890000e-176 628
39 TraesCS6A01G344500 chr7D 91.202 466 28 12 2421 2883 429958539 429958084 3.160000e-174 621
40 TraesCS6A01G344500 chr7D 95.665 346 14 1 1030 1374 43291151 43290806 3.250000e-154 555
41 TraesCS6A01G344500 chr7D 87.103 504 47 15 1376 1876 590429797 590430285 3.250000e-154 555
42 TraesCS6A01G344500 chr7D 95.349 344 15 1 1032 1374 139583420 139583763 1.950000e-151 545
43 TraesCS6A01G344500 chr7D 90.323 372 17 3 1505 1876 139583805 139584157 1.210000e-128 470
44 TraesCS6A01G344500 chr7D 86.275 306 37 4 638 938 590428846 590429151 7.700000e-86 327
45 TraesCS6A01G344500 chr7D 96.000 75 3 0 1 75 539126204 539126130 3.900000e-24 122
46 TraesCS6A01G344500 chr7D 93.333 75 5 0 1 75 8615073 8615147 8.440000e-21 111
47 TraesCS6A01G344500 chr2D 95.376 346 15 1 1030 1374 248754352 248754007 1.510000e-152 549
48 TraesCS6A01G344500 chr2D 90.909 374 15 6 1503 1876 396725626 396725980 4.320000e-133 484
49 TraesCS6A01G344500 chr2D 90.374 374 17 7 1503 1876 248753967 248753613 9.350000e-130 473
50 TraesCS6A01G344500 chr2D 94.667 75 4 0 1 75 50831131 50831057 1.820000e-22 117
51 TraesCS6A01G344500 chr5D 95.362 345 15 1 1030 1373 482310660 482311004 5.430000e-152 547
52 TraesCS6A01G344500 chr5D 90.909 374 15 3 1503 1876 482311045 482311399 4.320000e-133 484
53 TraesCS6A01G344500 chr5D 90.909 374 15 7 1503 1876 482312422 482312068 4.320000e-133 484
54 TraesCS6A01G344500 chr5D 90.374 374 17 3 1503 1876 178910776 178910422 9.350000e-130 473
55 TraesCS6A01G344500 chr5D 95.951 247 10 0 1503 1749 404739282 404739036 4.470000e-108 401
56 TraesCS6A01G344500 chr2B 88.034 117 9 3 461 577 75644889 75645000 1.800000e-27 134
57 TraesCS6A01G344500 chr2B 86.667 120 11 2 461 580 380577366 380577252 8.380000e-26 128
58 TraesCS6A01G344500 chr2B 96.000 75 2 1 1 75 220433485 220433558 1.400000e-23 121
59 TraesCS6A01G344500 chr4A 94.667 75 4 0 1 75 619803403 619803329 1.820000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G344500 chr6A 578662386 578665268 2882 True 2342.000000 4545 100.000000 1 2883 2 chr6A.!!$R1 2882
1 TraesCS6A01G344500 chr3B 137275288 137276202 914 False 1437.000000 1437 94.989000 504 1421 1 chr3B.!!$F1 917
2 TraesCS6A01G344500 chr3B 693814514 693815037 523 True 780.000000 780 93.524000 2360 2883 1 chr3B.!!$R1 523
3 TraesCS6A01G344500 chr7B 65082766 65083665 899 False 1312.000000 1312 92.857000 512 1421 1 chr7B.!!$F2 909
4 TraesCS6A01G344500 chr7B 665414777 665416474 1697 False 234.500000 252 92.265000 1376 1878 2 chr7B.!!$F3 502
5 TraesCS6A01G344500 chr1A 220290260 220291487 1227 False 662.000000 1225 93.898000 423 1421 2 chr1A.!!$F2 998
6 TraesCS6A01G344500 chr7A 602272764 602275266 2502 True 781.333333 1134 93.147333 577 2883 3 chr7A.!!$R1 2306
7 TraesCS6A01G344500 chr6B 455775752 455776478 726 False 1081.000000 1081 93.544000 2158 2883 1 chr6B.!!$F2 725
8 TraesCS6A01G344500 chr6B 44523347 44524057 710 False 989.000000 989 91.621000 2158 2883 1 chr6B.!!$F1 725
9 TraesCS6A01G344500 chr3D 134543561 134544282 721 True 1055.000000 1055 93.014000 2158 2883 1 chr3D.!!$R1 725
10 TraesCS6A01G344500 chr2A 37683120 37683840 720 True 1003.000000 1003 91.803000 2158 2883 1 chr2A.!!$R1 725
11 TraesCS6A01G344500 chr5B 25707995 25708510 515 False 802.000000 802 94.767000 2158 2672 1 chr5B.!!$F1 514
12 TraesCS6A01G344500 chr6D 202935006 202935637 631 True 475.500000 544 95.721500 1030 1749 2 chr6D.!!$R3 719
13 TraesCS6A01G344500 chr7D 139583420 139584157 737 False 507.500000 545 92.836000 1032 1876 2 chr7D.!!$F2 844
14 TraesCS6A01G344500 chr7D 590428846 590430285 1439 False 441.000000 555 86.689000 638 1876 2 chr7D.!!$F3 1238
15 TraesCS6A01G344500 chr2D 248753613 248754352 739 True 511.000000 549 92.875000 1030 1876 2 chr2D.!!$R2 846
16 TraesCS6A01G344500 chr5D 482310660 482311399 739 False 515.500000 547 93.135500 1030 1876 2 chr5D.!!$F1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.109342 CCACATCCTCCCACCATAGC 59.891 60.0 0.0 0.0 0.0 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 4203 0.03582 TGGGATACAACCGCTTGACC 60.036 55.0 0.0 0.0 39.74 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.097361 GTCGCCCCTGACCCCTTC 62.097 72.222 0.00 0.00 32.61 3.46
32 33 4.332543 TCGCCCCTGACCCCTTCT 62.333 66.667 0.00 0.00 0.00 2.85
33 34 3.787001 CGCCCCTGACCCCTTCTC 61.787 72.222 0.00 0.00 0.00 2.87
34 35 3.412408 GCCCCTGACCCCTTCTCC 61.412 72.222 0.00 0.00 0.00 3.71
35 36 2.692741 CCCCTGACCCCTTCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
36 37 2.692741 CCCTGACCCCTTCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
37 38 3.083997 CCTGACCCCTTCTCCCCG 61.084 72.222 0.00 0.00 0.00 5.73
38 39 2.038975 CTGACCCCTTCTCCCCGA 59.961 66.667 0.00 0.00 0.00 5.14
39 40 1.383248 CTGACCCCTTCTCCCCGAT 60.383 63.158 0.00 0.00 0.00 4.18
40 41 0.983378 CTGACCCCTTCTCCCCGATT 60.983 60.000 0.00 0.00 0.00 3.34
41 42 0.981277 TGACCCCTTCTCCCCGATTC 60.981 60.000 0.00 0.00 0.00 2.52
42 43 0.981277 GACCCCTTCTCCCCGATTCA 60.981 60.000 0.00 0.00 0.00 2.57
43 44 0.983378 ACCCCTTCTCCCCGATTCAG 60.983 60.000 0.00 0.00 0.00 3.02
44 45 0.691078 CCCCTTCTCCCCGATTCAGA 60.691 60.000 0.00 0.00 0.00 3.27
45 46 0.466124 CCCTTCTCCCCGATTCAGAC 59.534 60.000 0.00 0.00 0.00 3.51
46 47 0.466124 CCTTCTCCCCGATTCAGACC 59.534 60.000 0.00 0.00 0.00 3.85
47 48 1.195115 CTTCTCCCCGATTCAGACCA 58.805 55.000 0.00 0.00 0.00 4.02
48 49 0.902531 TTCTCCCCGATTCAGACCAC 59.097 55.000 0.00 0.00 0.00 4.16
49 50 0.252057 TCTCCCCGATTCAGACCACA 60.252 55.000 0.00 0.00 0.00 4.17
50 51 0.833287 CTCCCCGATTCAGACCACAT 59.167 55.000 0.00 0.00 0.00 3.21
51 52 0.830648 TCCCCGATTCAGACCACATC 59.169 55.000 0.00 0.00 0.00 3.06
52 53 0.179045 CCCCGATTCAGACCACATCC 60.179 60.000 0.00 0.00 0.00 3.51
53 54 0.833287 CCCGATTCAGACCACATCCT 59.167 55.000 0.00 0.00 0.00 3.24
54 55 1.202580 CCCGATTCAGACCACATCCTC 60.203 57.143 0.00 0.00 0.00 3.71
55 56 1.202580 CCGATTCAGACCACATCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
56 57 1.202580 CGATTCAGACCACATCCTCCC 60.203 57.143 0.00 0.00 0.00 4.30
57 58 1.839994 GATTCAGACCACATCCTCCCA 59.160 52.381 0.00 0.00 0.00 4.37
58 59 0.984230 TTCAGACCACATCCTCCCAC 59.016 55.000 0.00 0.00 0.00 4.61
59 60 0.909610 TCAGACCACATCCTCCCACC 60.910 60.000 0.00 0.00 0.00 4.61
60 61 1.160870 AGACCACATCCTCCCACCA 59.839 57.895 0.00 0.00 0.00 4.17
61 62 0.253347 AGACCACATCCTCCCACCAT 60.253 55.000 0.00 0.00 0.00 3.55
62 63 1.009552 AGACCACATCCTCCCACCATA 59.990 52.381 0.00 0.00 0.00 2.74
63 64 1.417890 GACCACATCCTCCCACCATAG 59.582 57.143 0.00 0.00 0.00 2.23
64 65 0.109342 CCACATCCTCCCACCATAGC 59.891 60.000 0.00 0.00 0.00 2.97
65 66 1.135094 CACATCCTCCCACCATAGCT 58.865 55.000 0.00 0.00 0.00 3.32
66 67 1.071385 CACATCCTCCCACCATAGCTC 59.929 57.143 0.00 0.00 0.00 4.09
67 68 0.319728 CATCCTCCCACCATAGCTCG 59.680 60.000 0.00 0.00 0.00 5.03
68 69 1.476007 ATCCTCCCACCATAGCTCGC 61.476 60.000 0.00 0.00 0.00 5.03
69 70 2.423446 CTCCCACCATAGCTCGCC 59.577 66.667 0.00 0.00 0.00 5.54
70 71 3.506059 CTCCCACCATAGCTCGCCG 62.506 68.421 0.00 0.00 0.00 6.46
502 505 4.614036 CACCCCACCCCAACCCAC 62.614 72.222 0.00 0.00 0.00 4.61
509 512 4.994756 CCCCAACCCACCACTGCC 62.995 72.222 0.00 0.00 0.00 4.85
526 529 3.518998 CGACCTCGTCTCCGCCAT 61.519 66.667 0.00 0.00 34.11 4.40
533 536 4.101448 GTCTCCGCCATGCACCCT 62.101 66.667 0.00 0.00 0.00 4.34
574 579 2.045524 CAGATCCACCAGTCTAGGCAT 58.954 52.381 0.00 0.00 0.00 4.40
665 897 4.681978 GGCGGCAGAAGTGACCGT 62.682 66.667 3.07 0.00 42.15 4.83
772 1005 4.309689 TCCCCAATCCCACCCCCA 62.310 66.667 0.00 0.00 0.00 4.96
851 1084 2.915869 GTGGACTGTGGTGGTGGT 59.084 61.111 0.00 0.00 0.00 4.16
952 1229 0.391661 GGCGCCAGTCAAGAAGATCA 60.392 55.000 24.80 0.00 0.00 2.92
1432 1936 9.233232 GTTATTACAAACTTATGCCATGCTTAC 57.767 33.333 0.00 0.00 0.00 2.34
1465 1970 0.968901 CATCAGTGTGCCAAGCCCAT 60.969 55.000 0.00 0.00 0.00 4.00
1482 1987 4.881850 AGCCCATATGTAGCAAAGTGTTAC 59.118 41.667 15.16 0.00 35.09 2.50
1496 2001 6.411652 CAAAGTGTTACGAAGTTCTGAAGAC 58.588 40.000 0.56 3.94 37.78 3.01
1616 3281 6.413235 GCTAATAGCATATACGTACTTACGGC 59.587 42.308 7.49 6.35 46.54 5.68
1654 3319 4.640201 TGAAGATACTTTTAGGGTGCATGC 59.360 41.667 11.82 11.82 0.00 4.06
1657 3322 2.483014 ACTTTTAGGGTGCATGCGTA 57.517 45.000 14.09 0.00 0.00 4.42
1878 4181 2.507407 TTTGCCAACATCCCTCCTAC 57.493 50.000 0.00 0.00 0.00 3.18
1879 4182 0.623723 TTGCCAACATCCCTCCTACC 59.376 55.000 0.00 0.00 0.00 3.18
1880 4183 0.253160 TGCCAACATCCCTCCTACCT 60.253 55.000 0.00 0.00 0.00 3.08
1881 4184 1.009060 TGCCAACATCCCTCCTACCTA 59.991 52.381 0.00 0.00 0.00 3.08
1882 4185 1.694696 GCCAACATCCCTCCTACCTAG 59.305 57.143 0.00 0.00 0.00 3.02
1883 4186 1.694696 CCAACATCCCTCCTACCTAGC 59.305 57.143 0.00 0.00 0.00 3.42
1884 4187 1.341531 CAACATCCCTCCTACCTAGCG 59.658 57.143 0.00 0.00 0.00 4.26
1885 4188 0.178958 ACATCCCTCCTACCTAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
1886 4189 0.900647 CATCCCTCCTACCTAGCGGG 60.901 65.000 0.00 0.00 41.89 6.13
1887 4190 2.733475 ATCCCTCCTACCTAGCGGGC 62.733 65.000 0.00 0.00 39.10 6.13
1888 4191 3.296054 CCTCCTACCTAGCGGGCG 61.296 72.222 0.00 0.00 39.10 6.13
1889 4192 2.518825 CTCCTACCTAGCGGGCGT 60.519 66.667 0.00 0.00 39.10 5.68
1890 4193 1.228063 CTCCTACCTAGCGGGCGTA 60.228 63.158 0.00 0.00 39.10 4.42
1891 4194 1.228063 TCCTACCTAGCGGGCGTAG 60.228 63.158 0.00 0.00 39.10 3.51
1892 4195 1.527844 CCTACCTAGCGGGCGTAGT 60.528 63.158 0.00 0.00 39.10 2.73
1893 4196 1.105759 CCTACCTAGCGGGCGTAGTT 61.106 60.000 0.00 0.00 39.10 2.24
1894 4197 0.743097 CTACCTAGCGGGCGTAGTTT 59.257 55.000 0.00 0.00 39.10 2.66
1895 4198 0.740737 TACCTAGCGGGCGTAGTTTC 59.259 55.000 0.00 0.00 39.10 2.78
1896 4199 1.588139 CCTAGCGGGCGTAGTTTCG 60.588 63.158 0.00 0.00 0.00 3.46
1897 4200 1.138247 CTAGCGGGCGTAGTTTCGT 59.862 57.895 0.00 0.00 0.00 3.85
1898 4201 0.864797 CTAGCGGGCGTAGTTTCGTC 60.865 60.000 0.00 0.00 34.52 4.20
1899 4202 1.585267 TAGCGGGCGTAGTTTCGTCA 61.585 55.000 0.00 0.00 37.15 4.35
1900 4203 2.442188 GCGGGCGTAGTTTCGTCAG 61.442 63.158 0.00 0.00 37.15 3.51
1901 4204 1.804326 CGGGCGTAGTTTCGTCAGG 60.804 63.158 0.00 0.00 37.15 3.86
1902 4205 1.291272 GGGCGTAGTTTCGTCAGGT 59.709 57.895 0.00 0.00 37.15 4.00
1903 4206 0.735287 GGGCGTAGTTTCGTCAGGTC 60.735 60.000 0.00 0.00 37.15 3.85
1904 4207 0.038892 GGCGTAGTTTCGTCAGGTCA 60.039 55.000 0.00 0.00 35.41 4.02
1905 4208 1.603678 GGCGTAGTTTCGTCAGGTCAA 60.604 52.381 0.00 0.00 35.41 3.18
1906 4209 1.719780 GCGTAGTTTCGTCAGGTCAAG 59.280 52.381 0.00 0.00 0.00 3.02
1907 4210 1.719780 CGTAGTTTCGTCAGGTCAAGC 59.280 52.381 0.00 0.00 0.00 4.01
1908 4211 1.719780 GTAGTTTCGTCAGGTCAAGCG 59.280 52.381 0.00 0.00 0.00 4.68
1909 4212 0.600255 AGTTTCGTCAGGTCAAGCGG 60.600 55.000 0.00 0.00 0.00 5.52
1910 4213 0.878961 GTTTCGTCAGGTCAAGCGGT 60.879 55.000 0.00 0.00 0.00 5.68
1911 4214 0.179067 TTTCGTCAGGTCAAGCGGTT 60.179 50.000 0.00 0.00 0.00 4.44
1912 4215 0.878523 TTCGTCAGGTCAAGCGGTTG 60.879 55.000 21.02 21.02 34.67 3.77
1913 4216 1.594293 CGTCAGGTCAAGCGGTTGT 60.594 57.895 25.18 5.17 34.98 3.32
1914 4217 0.319211 CGTCAGGTCAAGCGGTTGTA 60.319 55.000 25.18 10.77 34.98 2.41
1915 4218 1.671850 CGTCAGGTCAAGCGGTTGTAT 60.672 52.381 25.18 10.89 34.98 2.29
1916 4219 2.000447 GTCAGGTCAAGCGGTTGTATC 59.000 52.381 25.18 16.42 34.98 2.24
1917 4220 1.066430 TCAGGTCAAGCGGTTGTATCC 60.066 52.381 25.18 22.90 34.98 2.59
1918 4221 0.252197 AGGTCAAGCGGTTGTATCCC 59.748 55.000 25.18 19.39 34.98 3.85
1919 4222 0.035820 GGTCAAGCGGTTGTATCCCA 60.036 55.000 25.18 3.66 34.98 4.37
1920 4223 1.084289 GTCAAGCGGTTGTATCCCAC 58.916 55.000 25.18 12.31 34.98 4.61
1921 4224 0.981183 TCAAGCGGTTGTATCCCACT 59.019 50.000 25.18 0.00 34.98 4.00
1922 4225 1.349688 TCAAGCGGTTGTATCCCACTT 59.650 47.619 25.18 0.00 34.98 3.16
1923 4226 2.568062 TCAAGCGGTTGTATCCCACTTA 59.432 45.455 25.18 0.66 34.98 2.24
1924 4227 3.199071 TCAAGCGGTTGTATCCCACTTAT 59.801 43.478 25.18 0.00 34.98 1.73
1925 4228 3.926058 AGCGGTTGTATCCCACTTATT 57.074 42.857 0.00 0.00 0.00 1.40
1926 4229 4.230745 AGCGGTTGTATCCCACTTATTT 57.769 40.909 0.00 0.00 0.00 1.40
1927 4230 3.945285 AGCGGTTGTATCCCACTTATTTG 59.055 43.478 0.00 0.00 0.00 2.32
1928 4231 3.066203 GCGGTTGTATCCCACTTATTTGG 59.934 47.826 0.00 0.00 36.26 3.28
1929 4232 4.519213 CGGTTGTATCCCACTTATTTGGA 58.481 43.478 0.00 0.00 39.24 3.53
1930 4233 4.944930 CGGTTGTATCCCACTTATTTGGAA 59.055 41.667 0.00 0.00 39.24 3.53
1931 4234 5.592688 CGGTTGTATCCCACTTATTTGGAAT 59.407 40.000 0.00 0.00 39.24 3.01
1932 4235 6.238648 CGGTTGTATCCCACTTATTTGGAATC 60.239 42.308 0.00 0.00 39.24 2.52
1933 4236 6.605594 GGTTGTATCCCACTTATTTGGAATCA 59.394 38.462 0.00 0.00 39.24 2.57
1934 4237 7.123547 GGTTGTATCCCACTTATTTGGAATCAA 59.876 37.037 0.00 0.00 39.24 2.57
1935 4238 8.695456 GTTGTATCCCACTTATTTGGAATCAAT 58.305 33.333 0.00 0.00 39.24 2.57
1936 4239 9.928618 TTGTATCCCACTTATTTGGAATCAATA 57.071 29.630 0.00 0.00 39.24 1.90
1937 4240 9.928618 TGTATCCCACTTATTTGGAATCAATAA 57.071 29.630 0.00 0.00 39.24 1.40
1983 4286 9.174166 ACATTACTTCACTAAACTGTTCTTTGT 57.826 29.630 0.00 0.00 0.00 2.83
1987 4290 8.379457 ACTTCACTAAACTGTTCTTTGTATCC 57.621 34.615 0.00 0.00 0.00 2.59
1988 4291 8.211629 ACTTCACTAAACTGTTCTTTGTATCCT 58.788 33.333 0.00 0.00 0.00 3.24
1989 4292 9.706691 CTTCACTAAACTGTTCTTTGTATCCTA 57.293 33.333 0.00 0.00 0.00 2.94
2024 4327 6.248569 TCTTTGTTTAAGAGGTCCTGTTCT 57.751 37.500 4.16 0.00 37.96 3.01
2025 4328 6.659824 TCTTTGTTTAAGAGGTCCTGTTCTT 58.340 36.000 4.16 0.77 37.96 2.52
2026 4329 7.116736 TCTTTGTTTAAGAGGTCCTGTTCTTT 58.883 34.615 4.16 0.00 37.96 2.52
2027 4330 6.693315 TTGTTTAAGAGGTCCTGTTCTTTG 57.307 37.500 4.16 0.00 35.42 2.77
2028 4331 4.578928 TGTTTAAGAGGTCCTGTTCTTTGC 59.421 41.667 4.16 0.00 35.42 3.68
2029 4332 4.706842 TTAAGAGGTCCTGTTCTTTGCT 57.293 40.909 4.16 0.00 35.42 3.91
2030 4333 3.584733 AAGAGGTCCTGTTCTTTGCTT 57.415 42.857 0.00 0.00 29.64 3.91
2031 4334 3.584733 AGAGGTCCTGTTCTTTGCTTT 57.415 42.857 0.00 0.00 0.00 3.51
2032 4335 3.903467 AGAGGTCCTGTTCTTTGCTTTT 58.097 40.909 0.00 0.00 0.00 2.27
2033 4336 5.048846 AGAGGTCCTGTTCTTTGCTTTTA 57.951 39.130 0.00 0.00 0.00 1.52
2034 4337 5.635120 AGAGGTCCTGTTCTTTGCTTTTAT 58.365 37.500 0.00 0.00 0.00 1.40
2035 4338 5.707764 AGAGGTCCTGTTCTTTGCTTTTATC 59.292 40.000 0.00 0.00 0.00 1.75
2036 4339 5.635120 AGGTCCTGTTCTTTGCTTTTATCT 58.365 37.500 0.00 0.00 0.00 1.98
2037 4340 6.779860 AGGTCCTGTTCTTTGCTTTTATCTA 58.220 36.000 0.00 0.00 0.00 1.98
2038 4341 7.406104 AGGTCCTGTTCTTTGCTTTTATCTAT 58.594 34.615 0.00 0.00 0.00 1.98
2039 4342 7.890655 AGGTCCTGTTCTTTGCTTTTATCTATT 59.109 33.333 0.00 0.00 0.00 1.73
2040 4343 8.184848 GGTCCTGTTCTTTGCTTTTATCTATTC 58.815 37.037 0.00 0.00 0.00 1.75
2041 4344 8.730680 GTCCTGTTCTTTGCTTTTATCTATTCA 58.269 33.333 0.00 0.00 0.00 2.57
2042 4345 8.730680 TCCTGTTCTTTGCTTTTATCTATTCAC 58.269 33.333 0.00 0.00 0.00 3.18
2043 4346 8.734386 CCTGTTCTTTGCTTTTATCTATTCACT 58.266 33.333 0.00 0.00 0.00 3.41
2052 4355 9.618890 TGCTTTTATCTATTCACTAAAGATGCT 57.381 29.630 0.00 0.00 32.39 3.79
2059 4362 9.678260 ATCTATTCACTAAAGATGCTTGTTTCT 57.322 29.630 0.00 0.00 0.00 2.52
2060 4363 9.507329 TCTATTCACTAAAGATGCTTGTTTCTT 57.493 29.630 0.00 0.00 33.69 2.52
2061 4364 9.766277 CTATTCACTAAAGATGCTTGTTTCTTC 57.234 33.333 0.00 0.00 31.09 2.87
2062 4365 6.560253 TCACTAAAGATGCTTGTTTCTTCC 57.440 37.500 0.00 0.00 31.09 3.46
2063 4366 6.061441 TCACTAAAGATGCTTGTTTCTTCCA 58.939 36.000 0.00 0.00 31.09 3.53
2064 4367 6.205464 TCACTAAAGATGCTTGTTTCTTCCAG 59.795 38.462 0.00 0.00 31.09 3.86
2065 4368 3.930634 AAGATGCTTGTTTCTTCCAGC 57.069 42.857 0.00 0.00 0.00 4.85
2066 4369 2.867624 AGATGCTTGTTTCTTCCAGCA 58.132 42.857 0.00 0.00 36.69 4.41
2067 4370 2.555757 AGATGCTTGTTTCTTCCAGCAC 59.444 45.455 0.00 0.00 35.03 4.40
2068 4371 2.057137 TGCTTGTTTCTTCCAGCACT 57.943 45.000 0.00 0.00 0.00 4.40
2069 4372 2.378038 TGCTTGTTTCTTCCAGCACTT 58.622 42.857 0.00 0.00 0.00 3.16
2070 4373 2.760092 TGCTTGTTTCTTCCAGCACTTT 59.240 40.909 0.00 0.00 0.00 2.66
2071 4374 3.118542 GCTTGTTTCTTCCAGCACTTTG 58.881 45.455 0.00 0.00 0.00 2.77
2072 4375 3.429410 GCTTGTTTCTTCCAGCACTTTGT 60.429 43.478 0.00 0.00 0.00 2.83
2073 4376 4.747810 CTTGTTTCTTCCAGCACTTTGTT 58.252 39.130 0.00 0.00 0.00 2.83
2074 4377 5.678616 GCTTGTTTCTTCCAGCACTTTGTTA 60.679 40.000 0.00 0.00 0.00 2.41
2075 4378 6.463995 TTGTTTCTTCCAGCACTTTGTTAT 57.536 33.333 0.00 0.00 0.00 1.89
2076 4379 5.830912 TGTTTCTTCCAGCACTTTGTTATG 58.169 37.500 0.00 0.00 0.00 1.90
2077 4380 4.503741 TTCTTCCAGCACTTTGTTATGC 57.496 40.909 0.00 0.00 42.39 3.14
2078 4381 2.483877 TCTTCCAGCACTTTGTTATGCG 59.516 45.455 0.00 0.00 46.74 4.73
2079 4382 2.177394 TCCAGCACTTTGTTATGCGA 57.823 45.000 0.00 0.00 46.74 5.10
2080 4383 2.710377 TCCAGCACTTTGTTATGCGAT 58.290 42.857 0.00 0.00 46.74 4.58
2081 4384 2.419673 TCCAGCACTTTGTTATGCGATG 59.580 45.455 0.00 0.00 46.74 3.84
2082 4385 2.162208 CCAGCACTTTGTTATGCGATGT 59.838 45.455 0.00 0.00 46.74 3.06
2083 4386 3.419915 CAGCACTTTGTTATGCGATGTC 58.580 45.455 0.00 0.00 46.74 3.06
2084 4387 3.073678 AGCACTTTGTTATGCGATGTCA 58.926 40.909 0.00 0.00 46.74 3.58
2085 4388 3.501828 AGCACTTTGTTATGCGATGTCAA 59.498 39.130 0.00 0.00 46.74 3.18
2086 4389 3.603770 GCACTTTGTTATGCGATGTCAAC 59.396 43.478 0.00 0.00 30.97 3.18
2087 4390 4.782156 CACTTTGTTATGCGATGTCAACA 58.218 39.130 0.00 0.00 0.00 3.33
2088 4391 5.393124 CACTTTGTTATGCGATGTCAACAT 58.607 37.500 0.00 0.00 39.70 2.71
2089 4392 5.858049 CACTTTGTTATGCGATGTCAACATT 59.142 36.000 0.00 0.00 36.57 2.71
2090 4393 5.858049 ACTTTGTTATGCGATGTCAACATTG 59.142 36.000 6.07 6.07 40.05 2.82
2091 4394 5.369685 TTGTTATGCGATGTCAACATTGT 57.630 34.783 11.15 0.00 39.42 2.71
2092 4395 5.369685 TGTTATGCGATGTCAACATTGTT 57.630 34.783 11.15 0.00 39.42 2.83
2093 4396 5.767269 TGTTATGCGATGTCAACATTGTTT 58.233 33.333 11.15 3.39 39.42 2.83
2094 4397 5.628606 TGTTATGCGATGTCAACATTGTTTG 59.371 36.000 11.15 0.00 39.42 2.93
2095 4398 3.978718 TGCGATGTCAACATTGTTTGA 57.021 38.095 11.15 0.00 39.42 2.69
2096 4399 4.502171 TGCGATGTCAACATTGTTTGAT 57.498 36.364 11.15 0.00 39.42 2.57
2097 4400 5.619625 TGCGATGTCAACATTGTTTGATA 57.380 34.783 11.15 0.86 39.42 2.15
2098 4401 6.193514 TGCGATGTCAACATTGTTTGATAT 57.806 33.333 11.15 5.36 39.31 1.63
2099 4402 6.619744 TGCGATGTCAACATTGTTTGATATT 58.380 32.000 11.15 0.00 37.43 1.28
2100 4403 6.527372 TGCGATGTCAACATTGTTTGATATTG 59.473 34.615 11.15 9.44 37.43 1.90
2101 4404 6.527722 GCGATGTCAACATTGTTTGATATTGT 59.472 34.615 11.15 0.00 39.22 2.71
2102 4405 7.461807 GCGATGTCAACATTGTTTGATATTGTG 60.462 37.037 11.15 10.77 39.22 3.33
2103 4406 7.538334 CGATGTCAACATTGTTTGATATTGTGT 59.462 33.333 0.00 0.00 37.43 3.72
2104 4407 9.195411 GATGTCAACATTGTTTGATATTGTGTT 57.805 29.630 0.00 0.00 37.43 3.32
2105 4408 8.939201 TGTCAACATTGTTTGATATTGTGTTT 57.061 26.923 0.00 0.00 37.80 2.83
2106 4409 9.376075 TGTCAACATTGTTTGATATTGTGTTTT 57.624 25.926 0.00 0.00 37.80 2.43
2107 4410 9.635632 GTCAACATTGTTTGATATTGTGTTTTG 57.364 29.630 0.00 0.00 37.80 2.44
2108 4411 8.333908 TCAACATTGTTTGATATTGTGTTTTGC 58.666 29.630 0.00 0.00 30.29 3.68
2109 4412 7.783090 ACATTGTTTGATATTGTGTTTTGCA 57.217 28.000 0.00 0.00 0.00 4.08
2110 4413 8.206325 ACATTGTTTGATATTGTGTTTTGCAA 57.794 26.923 0.00 0.00 0.00 4.08
2111 4414 8.838365 ACATTGTTTGATATTGTGTTTTGCAAT 58.162 25.926 0.00 0.00 39.55 3.56
2112 4415 9.108449 CATTGTTTGATATTGTGTTTTGCAATG 57.892 29.630 0.00 0.00 37.18 2.82
2113 4416 8.429493 TTGTTTGATATTGTGTTTTGCAATGA 57.571 26.923 0.00 0.00 37.18 2.57
2114 4417 8.429493 TGTTTGATATTGTGTTTTGCAATGAA 57.571 26.923 0.00 0.00 37.18 2.57
2115 4418 8.886719 TGTTTGATATTGTGTTTTGCAATGAAA 58.113 25.926 0.00 0.00 37.18 2.69
2116 4419 9.157259 GTTTGATATTGTGTTTTGCAATGAAAC 57.843 29.630 0.00 2.39 37.18 2.78
2117 4420 7.103159 TGATATTGTGTTTTGCAATGAAACG 57.897 32.000 0.00 0.00 39.30 3.60
2118 4421 6.920210 TGATATTGTGTTTTGCAATGAAACGA 59.080 30.769 0.00 0.00 39.30 3.85
2119 4422 7.598118 TGATATTGTGTTTTGCAATGAAACGAT 59.402 29.630 0.00 5.86 39.30 3.73
2120 4423 8.978564 ATATTGTGTTTTGCAATGAAACGATA 57.021 26.923 0.00 7.85 39.30 2.92
2121 4424 6.746104 TTGTGTTTTGCAATGAAACGATAG 57.254 33.333 0.00 0.00 39.30 2.08
2122 4425 6.922957 ATTGTGTTTTGCAATGAAACGATAGT 59.077 30.769 0.00 0.00 42.60 2.12
2123 4426 7.096106 ATTGTGTTTTGCAATGAAACGATAGTG 60.096 33.333 0.00 0.00 41.04 2.74
2136 4439 2.819115 CGATAGTGCACTGAATCAGCT 58.181 47.619 29.57 1.79 34.37 4.24
2137 4440 2.793790 CGATAGTGCACTGAATCAGCTC 59.206 50.000 29.57 10.95 34.37 4.09
2138 4441 2.680312 TAGTGCACTGAATCAGCTCC 57.320 50.000 29.57 0.00 34.37 4.70
2139 4442 0.689055 AGTGCACTGAATCAGCTCCA 59.311 50.000 20.97 2.17 34.37 3.86
2140 4443 1.281287 AGTGCACTGAATCAGCTCCAT 59.719 47.619 20.97 0.00 34.37 3.41
2141 4444 2.089980 GTGCACTGAATCAGCTCCATT 58.910 47.619 10.32 0.00 34.37 3.16
2142 4445 2.490903 GTGCACTGAATCAGCTCCATTT 59.509 45.455 10.32 0.00 34.37 2.32
2143 4446 2.490509 TGCACTGAATCAGCTCCATTTG 59.509 45.455 10.62 0.27 34.37 2.32
2144 4447 2.490903 GCACTGAATCAGCTCCATTTGT 59.509 45.455 10.62 0.00 34.37 2.83
2145 4448 3.057033 GCACTGAATCAGCTCCATTTGTT 60.057 43.478 10.62 0.00 34.37 2.83
2146 4449 4.560108 GCACTGAATCAGCTCCATTTGTTT 60.560 41.667 10.62 0.00 34.37 2.83
2147 4450 4.921515 CACTGAATCAGCTCCATTTGTTTG 59.078 41.667 10.62 0.00 34.37 2.93
2148 4451 3.916761 TGAATCAGCTCCATTTGTTTGC 58.083 40.909 0.00 0.00 0.00 3.68
2149 4452 3.256558 GAATCAGCTCCATTTGTTTGCC 58.743 45.455 0.00 0.00 0.00 4.52
2150 4453 0.968405 TCAGCTCCATTTGTTTGCCC 59.032 50.000 0.00 0.00 0.00 5.36
2151 4454 0.388907 CAGCTCCATTTGTTTGCCCG 60.389 55.000 0.00 0.00 0.00 6.13
2152 4455 0.827507 AGCTCCATTTGTTTGCCCGT 60.828 50.000 0.00 0.00 0.00 5.28
2153 4456 0.667184 GCTCCATTTGTTTGCCCGTG 60.667 55.000 0.00 0.00 0.00 4.94
2154 4457 0.673437 CTCCATTTGTTTGCCCGTGT 59.327 50.000 0.00 0.00 0.00 4.49
2155 4458 1.883275 CTCCATTTGTTTGCCCGTGTA 59.117 47.619 0.00 0.00 0.00 2.90
2156 4459 1.609555 TCCATTTGTTTGCCCGTGTAC 59.390 47.619 0.00 0.00 0.00 2.90
2157 4460 1.338337 CCATTTGTTTGCCCGTGTACA 59.662 47.619 0.00 0.00 0.00 2.90
2158 4461 2.389998 CATTTGTTTGCCCGTGTACAC 58.610 47.619 16.32 16.32 0.00 2.90
2159 4462 1.752683 TTTGTTTGCCCGTGTACACT 58.247 45.000 23.01 0.00 0.00 3.55
2204 4508 3.303881 TGTACACTAGCAGCTTGAGTG 57.696 47.619 19.80 19.80 44.98 3.51
2281 4585 5.049405 GGATATTCCATGTTCACCGAATGTC 60.049 44.000 7.74 7.74 36.28 3.06
2350 4654 4.634184 ATAACGAGTGTCGAGTTATGCT 57.366 40.909 2.82 0.00 43.74 3.79
2532 4836 4.202461 TGCTTTCCAAAGTGATCTGTACCT 60.202 41.667 0.00 0.00 38.28 3.08
2545 4849 5.186992 TGATCTGTACCTAACTGCTTGCTTA 59.813 40.000 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.097361 GAAGGGGTCAGGGGCGAC 62.097 72.222 0.00 0.00 35.03 5.19
15 16 4.332543 AGAAGGGGTCAGGGGCGA 62.333 66.667 0.00 0.00 0.00 5.54
16 17 3.787001 GAGAAGGGGTCAGGGGCG 61.787 72.222 0.00 0.00 0.00 6.13
17 18 3.412408 GGAGAAGGGGTCAGGGGC 61.412 72.222 0.00 0.00 0.00 5.80
18 19 2.692741 GGGAGAAGGGGTCAGGGG 60.693 72.222 0.00 0.00 0.00 4.79
19 20 2.692741 GGGGAGAAGGGGTCAGGG 60.693 72.222 0.00 0.00 0.00 4.45
20 21 2.898472 ATCGGGGAGAAGGGGTCAGG 62.898 65.000 0.00 0.00 0.00 3.86
21 22 0.983378 AATCGGGGAGAAGGGGTCAG 60.983 60.000 0.00 0.00 0.00 3.51
22 23 0.981277 GAATCGGGGAGAAGGGGTCA 60.981 60.000 0.00 0.00 0.00 4.02
23 24 0.981277 TGAATCGGGGAGAAGGGGTC 60.981 60.000 0.00 0.00 0.00 4.46
24 25 0.983378 CTGAATCGGGGAGAAGGGGT 60.983 60.000 0.00 0.00 0.00 4.95
25 26 0.691078 TCTGAATCGGGGAGAAGGGG 60.691 60.000 0.00 0.00 0.00 4.79
26 27 0.466124 GTCTGAATCGGGGAGAAGGG 59.534 60.000 0.00 0.00 0.00 3.95
27 28 0.466124 GGTCTGAATCGGGGAGAAGG 59.534 60.000 0.00 0.00 0.00 3.46
28 29 1.134670 GTGGTCTGAATCGGGGAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
29 30 0.902531 GTGGTCTGAATCGGGGAGAA 59.097 55.000 0.00 0.00 0.00 2.87
30 31 0.252057 TGTGGTCTGAATCGGGGAGA 60.252 55.000 0.00 0.00 0.00 3.71
31 32 0.833287 ATGTGGTCTGAATCGGGGAG 59.167 55.000 0.00 0.00 0.00 4.30
32 33 0.830648 GATGTGGTCTGAATCGGGGA 59.169 55.000 0.00 0.00 0.00 4.81
33 34 0.179045 GGATGTGGTCTGAATCGGGG 60.179 60.000 0.00 0.00 0.00 5.73
34 35 0.833287 AGGATGTGGTCTGAATCGGG 59.167 55.000 0.00 0.00 0.00 5.14
35 36 1.202580 GGAGGATGTGGTCTGAATCGG 60.203 57.143 0.00 0.00 0.00 4.18
36 37 1.202580 GGGAGGATGTGGTCTGAATCG 60.203 57.143 0.00 0.00 0.00 3.34
37 38 1.839994 TGGGAGGATGTGGTCTGAATC 59.160 52.381 0.00 0.00 0.00 2.52
38 39 1.561542 GTGGGAGGATGTGGTCTGAAT 59.438 52.381 0.00 0.00 0.00 2.57
39 40 0.984230 GTGGGAGGATGTGGTCTGAA 59.016 55.000 0.00 0.00 0.00 3.02
40 41 0.909610 GGTGGGAGGATGTGGTCTGA 60.910 60.000 0.00 0.00 0.00 3.27
41 42 1.200760 TGGTGGGAGGATGTGGTCTG 61.201 60.000 0.00 0.00 0.00 3.51
42 43 0.253347 ATGGTGGGAGGATGTGGTCT 60.253 55.000 0.00 0.00 0.00 3.85
43 44 1.417890 CTATGGTGGGAGGATGTGGTC 59.582 57.143 0.00 0.00 0.00 4.02
44 45 1.511613 CTATGGTGGGAGGATGTGGT 58.488 55.000 0.00 0.00 0.00 4.16
45 46 0.109342 GCTATGGTGGGAGGATGTGG 59.891 60.000 0.00 0.00 0.00 4.17
46 47 1.071385 GAGCTATGGTGGGAGGATGTG 59.929 57.143 0.00 0.00 0.00 3.21
47 48 1.428869 GAGCTATGGTGGGAGGATGT 58.571 55.000 0.00 0.00 0.00 3.06
48 49 0.319728 CGAGCTATGGTGGGAGGATG 59.680 60.000 0.00 0.00 0.00 3.51
49 50 1.476007 GCGAGCTATGGTGGGAGGAT 61.476 60.000 0.00 0.00 0.00 3.24
50 51 2.134287 GCGAGCTATGGTGGGAGGA 61.134 63.158 0.00 0.00 0.00 3.71
51 52 2.423446 GCGAGCTATGGTGGGAGG 59.577 66.667 0.00 0.00 0.00 4.30
52 53 2.423446 GGCGAGCTATGGTGGGAG 59.577 66.667 0.00 0.00 0.00 4.30
53 54 3.536917 CGGCGAGCTATGGTGGGA 61.537 66.667 0.00 0.00 0.00 4.37
442 443 1.662438 GGCAGGTCGAGGTCAGAGAG 61.662 65.000 0.00 0.00 0.00 3.20
488 491 4.614036 GTGGTGGGTTGGGGTGGG 62.614 72.222 0.00 0.00 0.00 4.61
489 492 3.507713 AGTGGTGGGTTGGGGTGG 61.508 66.667 0.00 0.00 0.00 4.61
490 493 2.203480 CAGTGGTGGGTTGGGGTG 60.203 66.667 0.00 0.00 0.00 4.61
491 494 4.218686 GCAGTGGTGGGTTGGGGT 62.219 66.667 0.00 0.00 0.00 4.95
492 495 4.994756 GGCAGTGGTGGGTTGGGG 62.995 72.222 0.00 0.00 0.00 4.96
494 497 4.263572 TCGGCAGTGGTGGGTTGG 62.264 66.667 0.00 0.00 0.00 3.77
495 498 2.978010 GTCGGCAGTGGTGGGTTG 60.978 66.667 0.00 0.00 0.00 3.77
496 499 4.265056 GGTCGGCAGTGGTGGGTT 62.265 66.667 0.00 0.00 0.00 4.11
498 501 4.394712 GAGGTCGGCAGTGGTGGG 62.395 72.222 0.00 0.00 0.00 4.61
499 502 4.742201 CGAGGTCGGCAGTGGTGG 62.742 72.222 0.00 0.00 35.37 4.61
500 503 3.991051 ACGAGGTCGGCAGTGGTG 61.991 66.667 4.13 0.00 44.95 4.17
532 535 1.745264 GATGAAGGCGAGGGGAGAG 59.255 63.158 0.00 0.00 0.00 3.20
533 536 1.762460 GGATGAAGGCGAGGGGAGA 60.762 63.158 0.00 0.00 0.00 3.71
574 579 1.529796 GGTGGTGAAGTGGTGACCA 59.470 57.895 0.00 0.00 37.43 4.02
659 891 4.980805 GAAGCGGTGGCACGGTCA 62.981 66.667 23.62 0.00 44.60 4.02
665 897 4.344865 GAAGGGGAAGCGGTGGCA 62.345 66.667 0.00 0.00 43.41 4.92
696 928 4.344865 GGAAGCTTGCGGGGTGGA 62.345 66.667 2.10 0.00 0.00 4.02
699 931 4.035102 GGAGGAAGCTTGCGGGGT 62.035 66.667 12.66 0.00 0.00 4.95
772 1005 0.247736 GCCTCAAGATCTGGACGTGT 59.752 55.000 0.00 0.00 0.00 4.49
897 1142 1.202582 CTCGTCGGTGATGAAGAAGGT 59.797 52.381 0.00 0.00 0.00 3.50
946 1223 4.913126 GGCGACGAAGGTGATCTT 57.087 55.556 0.00 0.00 38.65 2.40
1465 1970 7.115805 CAGAACTTCGTAACACTTTGCTACATA 59.884 37.037 0.00 0.00 0.00 2.29
1482 1987 3.795561 AAATGCGTCTTCAGAACTTCG 57.204 42.857 0.00 0.00 0.00 3.79
1496 2001 4.456914 GGATTGAAGCAAACAAAAATGCG 58.543 39.130 0.00 0.00 46.98 4.73
1616 3281 1.403679 TCTTCAAACTGCAACAACCGG 59.596 47.619 0.00 0.00 0.00 5.28
1654 3319 7.385752 TCTGGAACAAGTTAACAACCTAATACG 59.614 37.037 8.61 0.00 38.70 3.06
1657 3322 7.287810 ACTCTGGAACAAGTTAACAACCTAAT 58.712 34.615 8.61 0.00 38.70 1.73
1699 3559 3.704566 ACATACATCAGGAACGGCTAGAA 59.295 43.478 0.00 0.00 0.00 2.10
1746 3890 8.491045 AAAGAAAATCCCTGTATCCAGAAAAA 57.509 30.769 0.00 0.00 41.50 1.94
1747 3891 9.243105 CTAAAGAAAATCCCTGTATCCAGAAAA 57.757 33.333 0.00 0.00 41.50 2.29
1748 3892 8.611257 TCTAAAGAAAATCCCTGTATCCAGAAA 58.389 33.333 0.00 0.00 41.50 2.52
1749 3893 8.158025 TCTAAAGAAAATCCCTGTATCCAGAA 57.842 34.615 0.00 0.00 41.50 3.02
1750 3894 7.403231 ACTCTAAAGAAAATCCCTGTATCCAGA 59.597 37.037 0.00 0.00 41.50 3.86
1751 3895 7.497249 CACTCTAAAGAAAATCCCTGTATCCAG 59.503 40.741 0.00 0.00 38.50 3.86
1752 3896 7.338710 CACTCTAAAGAAAATCCCTGTATCCA 58.661 38.462 0.00 0.00 0.00 3.41
1753 3897 6.261158 GCACTCTAAAGAAAATCCCTGTATCC 59.739 42.308 0.00 0.00 0.00 2.59
1754 3898 7.011857 CAGCACTCTAAAGAAAATCCCTGTATC 59.988 40.741 0.00 0.00 0.00 2.24
1755 3899 6.825721 CAGCACTCTAAAGAAAATCCCTGTAT 59.174 38.462 0.00 0.00 0.00 2.29
1756 3900 6.173339 CAGCACTCTAAAGAAAATCCCTGTA 58.827 40.000 0.00 0.00 0.00 2.74
1757 3901 5.006386 CAGCACTCTAAAGAAAATCCCTGT 58.994 41.667 0.00 0.00 0.00 4.00
1758 3902 4.397417 CCAGCACTCTAAAGAAAATCCCTG 59.603 45.833 0.00 0.00 0.00 4.45
1773 3917 0.744874 TATCACTACGCCCAGCACTC 59.255 55.000 0.00 0.00 0.00 3.51
1878 4181 1.588139 CGAAACTACGCCCGCTAGG 60.588 63.158 0.00 0.00 39.47 3.02
1879 4182 0.864797 GACGAAACTACGCCCGCTAG 60.865 60.000 0.00 0.00 36.70 3.42
1880 4183 1.137404 GACGAAACTACGCCCGCTA 59.863 57.895 0.00 0.00 36.70 4.26
1881 4184 2.126189 GACGAAACTACGCCCGCT 60.126 61.111 0.00 0.00 36.70 5.52
1882 4185 2.431260 TGACGAAACTACGCCCGC 60.431 61.111 0.00 0.00 36.70 6.13
1883 4186 1.804326 CCTGACGAAACTACGCCCG 60.804 63.158 0.00 0.00 36.70 6.13
1884 4187 0.735287 GACCTGACGAAACTACGCCC 60.735 60.000 0.00 0.00 36.70 6.13
1885 4188 0.038892 TGACCTGACGAAACTACGCC 60.039 55.000 0.00 0.00 36.70 5.68
1886 4189 1.719780 CTTGACCTGACGAAACTACGC 59.280 52.381 0.00 0.00 36.70 4.42
1887 4190 1.719780 GCTTGACCTGACGAAACTACG 59.280 52.381 0.00 0.00 39.31 3.51
1888 4191 1.719780 CGCTTGACCTGACGAAACTAC 59.280 52.381 0.00 0.00 0.00 2.73
1889 4192 1.336517 CCGCTTGACCTGACGAAACTA 60.337 52.381 0.00 0.00 0.00 2.24
1890 4193 0.600255 CCGCTTGACCTGACGAAACT 60.600 55.000 0.00 0.00 0.00 2.66
1891 4194 0.878961 ACCGCTTGACCTGACGAAAC 60.879 55.000 0.00 0.00 0.00 2.78
1892 4195 0.179067 AACCGCTTGACCTGACGAAA 60.179 50.000 0.00 0.00 0.00 3.46
1893 4196 0.878523 CAACCGCTTGACCTGACGAA 60.879 55.000 0.00 0.00 0.00 3.85
1894 4197 1.300620 CAACCGCTTGACCTGACGA 60.301 57.895 0.00 0.00 0.00 4.20
1895 4198 0.319211 TACAACCGCTTGACCTGACG 60.319 55.000 0.00 0.00 0.00 4.35
1896 4199 2.000447 GATACAACCGCTTGACCTGAC 59.000 52.381 0.00 0.00 0.00 3.51
1897 4200 1.066430 GGATACAACCGCTTGACCTGA 60.066 52.381 0.00 0.00 0.00 3.86
1898 4201 1.369625 GGATACAACCGCTTGACCTG 58.630 55.000 0.00 0.00 0.00 4.00
1899 4202 0.252197 GGGATACAACCGCTTGACCT 59.748 55.000 0.00 0.00 39.74 3.85
1900 4203 0.035820 TGGGATACAACCGCTTGACC 60.036 55.000 0.00 0.00 39.74 4.02
1901 4204 1.084289 GTGGGATACAACCGCTTGAC 58.916 55.000 0.00 0.00 35.64 3.18
1902 4205 0.981183 AGTGGGATACAACCGCTTGA 59.019 50.000 0.00 0.00 46.15 3.02
1903 4206 3.551259 AGTGGGATACAACCGCTTG 57.449 52.632 0.00 0.00 46.15 4.01
1906 4209 3.066203 CCAAATAAGTGGGATACAACCGC 59.934 47.826 0.00 0.00 38.78 5.68
1907 4210 4.519213 TCCAAATAAGTGGGATACAACCG 58.481 43.478 0.00 0.00 39.34 4.44
1908 4211 6.605594 TGATTCCAAATAAGTGGGATACAACC 59.394 38.462 0.00 0.00 36.97 3.77
1909 4212 7.639113 TGATTCCAAATAAGTGGGATACAAC 57.361 36.000 0.00 0.00 36.97 3.32
1910 4213 8.837099 ATTGATTCCAAATAAGTGGGATACAA 57.163 30.769 0.00 0.00 36.97 2.41
1911 4214 9.928618 TTATTGATTCCAAATAAGTGGGATACA 57.071 29.630 0.00 0.00 36.97 2.29
1957 4260 9.174166 ACAAAGAACAGTTTAGTGAAGTAATGT 57.826 29.630 0.00 0.00 0.00 2.71
1961 4264 9.485206 GGATACAAAGAACAGTTTAGTGAAGTA 57.515 33.333 0.00 0.00 0.00 2.24
1962 4265 8.211629 AGGATACAAAGAACAGTTTAGTGAAGT 58.788 33.333 0.00 0.00 41.41 3.01
1963 4266 8.608844 AGGATACAAAGAACAGTTTAGTGAAG 57.391 34.615 0.00 0.00 41.41 3.02
2001 4304 6.248569 AGAACAGGACCTCTTAAACAAAGA 57.751 37.500 0.00 0.00 42.07 2.52
2002 4305 6.944234 AAGAACAGGACCTCTTAAACAAAG 57.056 37.500 0.00 0.00 36.45 2.77
2003 4306 6.405397 GCAAAGAACAGGACCTCTTAAACAAA 60.405 38.462 0.00 0.00 31.61 2.83
2004 4307 5.067283 GCAAAGAACAGGACCTCTTAAACAA 59.933 40.000 0.00 0.00 31.61 2.83
2005 4308 4.578928 GCAAAGAACAGGACCTCTTAAACA 59.421 41.667 0.00 0.00 31.61 2.83
2006 4309 4.822350 AGCAAAGAACAGGACCTCTTAAAC 59.178 41.667 0.00 0.00 31.61 2.01
2007 4310 5.048846 AGCAAAGAACAGGACCTCTTAAA 57.951 39.130 0.00 0.00 31.61 1.52
2008 4311 4.706842 AGCAAAGAACAGGACCTCTTAA 57.293 40.909 0.00 0.00 31.61 1.85
2009 4312 4.706842 AAGCAAAGAACAGGACCTCTTA 57.293 40.909 0.00 0.00 31.61 2.10
2010 4313 3.584733 AAGCAAAGAACAGGACCTCTT 57.415 42.857 0.00 0.00 33.25 2.85
2011 4314 3.584733 AAAGCAAAGAACAGGACCTCT 57.415 42.857 0.00 0.00 0.00 3.69
2012 4315 5.707764 AGATAAAAGCAAAGAACAGGACCTC 59.292 40.000 0.00 0.00 0.00 3.85
2013 4316 5.635120 AGATAAAAGCAAAGAACAGGACCT 58.365 37.500 0.00 0.00 0.00 3.85
2014 4317 5.966742 AGATAAAAGCAAAGAACAGGACC 57.033 39.130 0.00 0.00 0.00 4.46
2015 4318 8.730680 TGAATAGATAAAAGCAAAGAACAGGAC 58.269 33.333 0.00 0.00 0.00 3.85
2016 4319 8.730680 GTGAATAGATAAAAGCAAAGAACAGGA 58.269 33.333 0.00 0.00 0.00 3.86
2017 4320 8.734386 AGTGAATAGATAAAAGCAAAGAACAGG 58.266 33.333 0.00 0.00 0.00 4.00
2026 4329 9.618890 AGCATCTTTAGTGAATAGATAAAAGCA 57.381 29.630 0.00 0.00 0.00 3.91
2033 4336 9.678260 AGAAACAAGCATCTTTAGTGAATAGAT 57.322 29.630 0.00 0.00 0.00 1.98
2034 4337 9.507329 AAGAAACAAGCATCTTTAGTGAATAGA 57.493 29.630 0.00 0.00 32.05 1.98
2035 4338 9.766277 GAAGAAACAAGCATCTTTAGTGAATAG 57.234 33.333 0.00 0.00 36.08 1.73
2036 4339 8.730680 GGAAGAAACAAGCATCTTTAGTGAATA 58.269 33.333 0.00 0.00 36.08 1.75
2037 4340 7.231317 TGGAAGAAACAAGCATCTTTAGTGAAT 59.769 33.333 0.00 0.00 36.08 2.57
2038 4341 6.545666 TGGAAGAAACAAGCATCTTTAGTGAA 59.454 34.615 0.00 0.00 36.08 3.18
2039 4342 6.061441 TGGAAGAAACAAGCATCTTTAGTGA 58.939 36.000 0.00 0.00 36.08 3.41
2040 4343 6.317789 TGGAAGAAACAAGCATCTTTAGTG 57.682 37.500 0.00 0.00 36.08 2.74
2041 4344 5.048434 GCTGGAAGAAACAAGCATCTTTAGT 60.048 40.000 0.00 0.00 36.08 2.24
2042 4345 5.048504 TGCTGGAAGAAACAAGCATCTTTAG 60.049 40.000 0.00 0.00 36.08 1.85
2043 4346 4.826733 TGCTGGAAGAAACAAGCATCTTTA 59.173 37.500 0.00 0.00 36.08 1.85
2044 4347 3.638160 TGCTGGAAGAAACAAGCATCTTT 59.362 39.130 0.00 0.00 36.08 2.52
2045 4348 3.005155 GTGCTGGAAGAAACAAGCATCTT 59.995 43.478 0.00 0.00 38.56 2.40
2046 4349 2.555757 GTGCTGGAAGAAACAAGCATCT 59.444 45.455 0.00 0.00 34.07 2.90
2047 4350 2.555757 AGTGCTGGAAGAAACAAGCATC 59.444 45.455 0.00 0.00 34.07 3.91
2048 4351 2.590821 AGTGCTGGAAGAAACAAGCAT 58.409 42.857 0.00 0.00 34.07 3.79
2049 4352 2.057137 AGTGCTGGAAGAAACAAGCA 57.943 45.000 0.00 0.00 34.07 3.91
2050 4353 3.118542 CAAAGTGCTGGAAGAAACAAGC 58.881 45.455 0.00 0.00 34.07 4.01
2051 4354 4.376340 ACAAAGTGCTGGAAGAAACAAG 57.624 40.909 0.00 0.00 34.07 3.16
2052 4355 4.799564 AACAAAGTGCTGGAAGAAACAA 57.200 36.364 0.00 0.00 34.07 2.83
2053 4356 5.735922 GCATAACAAAGTGCTGGAAGAAACA 60.736 40.000 0.00 0.00 38.30 2.83
2054 4357 4.681483 GCATAACAAAGTGCTGGAAGAAAC 59.319 41.667 0.00 0.00 38.30 2.78
2055 4358 4.556501 CGCATAACAAAGTGCTGGAAGAAA 60.557 41.667 0.00 0.00 39.16 2.52
2056 4359 3.058293 CGCATAACAAAGTGCTGGAAGAA 60.058 43.478 0.00 0.00 39.16 2.52
2057 4360 2.483877 CGCATAACAAAGTGCTGGAAGA 59.516 45.455 0.00 0.00 39.16 2.87
2058 4361 2.483877 TCGCATAACAAAGTGCTGGAAG 59.516 45.455 0.00 0.00 39.16 3.46
2059 4362 2.499197 TCGCATAACAAAGTGCTGGAA 58.501 42.857 0.00 0.00 39.16 3.53
2060 4363 2.177394 TCGCATAACAAAGTGCTGGA 57.823 45.000 0.00 0.00 39.16 3.86
2061 4364 2.162208 ACATCGCATAACAAAGTGCTGG 59.838 45.455 0.00 0.00 39.16 4.85
2062 4365 3.120234 TGACATCGCATAACAAAGTGCTG 60.120 43.478 0.00 0.00 39.16 4.41
2063 4366 3.073678 TGACATCGCATAACAAAGTGCT 58.926 40.909 0.00 0.00 39.16 4.40
2064 4367 3.469899 TGACATCGCATAACAAAGTGC 57.530 42.857 0.00 0.00 37.97 4.40
2065 4368 4.782156 TGTTGACATCGCATAACAAAGTG 58.218 39.130 0.00 0.00 30.81 3.16
2066 4369 5.627499 ATGTTGACATCGCATAACAAAGT 57.373 34.783 0.00 0.00 36.71 2.66
2067 4370 5.858049 ACAATGTTGACATCGCATAACAAAG 59.142 36.000 0.00 0.00 36.71 2.77
2068 4371 5.767269 ACAATGTTGACATCGCATAACAAA 58.233 33.333 0.00 0.00 36.71 2.83
2069 4372 5.369685 ACAATGTTGACATCGCATAACAA 57.630 34.783 0.00 0.00 36.71 2.83
2070 4373 5.369685 AACAATGTTGACATCGCATAACA 57.630 34.783 0.00 0.00 37.43 2.41
2071 4374 5.855925 TCAAACAATGTTGACATCGCATAAC 59.144 36.000 0.00 0.00 35.10 1.89
2072 4375 6.006759 TCAAACAATGTTGACATCGCATAA 57.993 33.333 0.00 0.00 35.10 1.90
2073 4376 5.619625 TCAAACAATGTTGACATCGCATA 57.380 34.783 0.00 0.00 35.10 3.14
2074 4377 4.502171 TCAAACAATGTTGACATCGCAT 57.498 36.364 0.00 0.00 35.10 4.73
2075 4378 3.978718 TCAAACAATGTTGACATCGCA 57.021 38.095 0.00 0.00 35.10 5.10
2076 4379 6.527722 ACAATATCAAACAATGTTGACATCGC 59.472 34.615 0.00 0.00 40.22 4.58
2077 4380 7.538334 ACACAATATCAAACAATGTTGACATCG 59.462 33.333 0.00 0.00 40.22 3.84
2078 4381 8.746922 ACACAATATCAAACAATGTTGACATC 57.253 30.769 0.00 0.00 40.22 3.06
2079 4382 9.545105 AAACACAATATCAAACAATGTTGACAT 57.455 25.926 0.00 0.00 40.22 3.06
2080 4383 8.939201 AAACACAATATCAAACAATGTTGACA 57.061 26.923 0.00 0.00 40.22 3.58
2081 4384 9.635632 CAAAACACAATATCAAACAATGTTGAC 57.364 29.630 0.00 0.00 40.22 3.18
2082 4385 8.333908 GCAAAACACAATATCAAACAATGTTGA 58.666 29.630 0.00 0.07 41.59 3.18
2083 4386 8.121086 TGCAAAACACAATATCAAACAATGTTG 58.879 29.630 0.00 0.00 34.85 3.33
2084 4387 8.206325 TGCAAAACACAATATCAAACAATGTT 57.794 26.923 0.00 0.00 0.00 2.71
2085 4388 7.783090 TGCAAAACACAATATCAAACAATGT 57.217 28.000 0.00 0.00 0.00 2.71
2086 4389 9.108449 CATTGCAAAACACAATATCAAACAATG 57.892 29.630 1.71 0.00 36.00 2.82
2087 4390 9.053840 TCATTGCAAAACACAATATCAAACAAT 57.946 25.926 1.71 0.00 36.00 2.71
2088 4391 8.429493 TCATTGCAAAACACAATATCAAACAA 57.571 26.923 1.71 0.00 36.00 2.83
2089 4392 8.429493 TTCATTGCAAAACACAATATCAAACA 57.571 26.923 1.71 0.00 36.00 2.83
2090 4393 9.157259 GTTTCATTGCAAAACACAATATCAAAC 57.843 29.630 1.71 0.00 36.00 2.93
2091 4394 8.060679 CGTTTCATTGCAAAACACAATATCAAA 58.939 29.630 1.71 0.00 36.00 2.69
2092 4395 7.436376 TCGTTTCATTGCAAAACACAATATCAA 59.564 29.630 1.71 0.00 36.00 2.57
2093 4396 6.920210 TCGTTTCATTGCAAAACACAATATCA 59.080 30.769 1.71 0.00 36.00 2.15
2094 4397 7.332003 TCGTTTCATTGCAAAACACAATATC 57.668 32.000 1.71 0.00 36.00 1.63
2095 4398 7.887996 ATCGTTTCATTGCAAAACACAATAT 57.112 28.000 1.71 0.00 36.00 1.28
2096 4399 8.079203 ACTATCGTTTCATTGCAAAACACAATA 58.921 29.630 1.71 2.00 36.00 1.90
2097 4400 6.922957 ACTATCGTTTCATTGCAAAACACAAT 59.077 30.769 1.71 0.94 38.25 2.71
2098 4401 6.198029 CACTATCGTTTCATTGCAAAACACAA 59.802 34.615 1.71 0.00 36.60 3.33
2099 4402 5.685068 CACTATCGTTTCATTGCAAAACACA 59.315 36.000 1.71 0.00 36.60 3.72
2100 4403 5.387342 GCACTATCGTTTCATTGCAAAACAC 60.387 40.000 1.71 0.00 36.60 3.32
2101 4404 4.679197 GCACTATCGTTTCATTGCAAAACA 59.321 37.500 1.71 0.00 36.60 2.83
2102 4405 4.679197 TGCACTATCGTTTCATTGCAAAAC 59.321 37.500 1.71 2.47 37.05 2.43
2103 4406 4.679197 GTGCACTATCGTTTCATTGCAAAA 59.321 37.500 10.32 0.00 41.37 2.44
2104 4407 4.023279 AGTGCACTATCGTTTCATTGCAAA 60.023 37.500 20.16 0.00 41.37 3.68
2105 4408 3.501828 AGTGCACTATCGTTTCATTGCAA 59.498 39.130 20.16 0.00 41.37 4.08
2106 4409 3.073678 AGTGCACTATCGTTTCATTGCA 58.926 40.909 20.16 0.00 37.63 4.08
2107 4410 3.125146 TCAGTGCACTATCGTTTCATTGC 59.875 43.478 21.20 0.00 0.00 3.56
2108 4411 4.926860 TCAGTGCACTATCGTTTCATTG 57.073 40.909 21.20 3.32 0.00 2.82
2109 4412 5.643348 TGATTCAGTGCACTATCGTTTCATT 59.357 36.000 21.20 0.00 0.00 2.57
2110 4413 5.178061 TGATTCAGTGCACTATCGTTTCAT 58.822 37.500 21.20 2.69 0.00 2.57
2111 4414 4.565022 TGATTCAGTGCACTATCGTTTCA 58.435 39.130 21.20 13.44 0.00 2.69
2112 4415 4.493220 GCTGATTCAGTGCACTATCGTTTC 60.493 45.833 21.20 11.09 33.43 2.78
2113 4416 3.372206 GCTGATTCAGTGCACTATCGTTT 59.628 43.478 21.20 1.15 33.43 3.60
2114 4417 2.932614 GCTGATTCAGTGCACTATCGTT 59.067 45.455 21.20 2.71 33.43 3.85
2115 4418 2.167281 AGCTGATTCAGTGCACTATCGT 59.833 45.455 21.20 5.96 33.43 3.73
2116 4419 2.793790 GAGCTGATTCAGTGCACTATCG 59.206 50.000 21.20 15.72 33.43 2.92
2117 4420 3.129871 GGAGCTGATTCAGTGCACTATC 58.870 50.000 21.20 19.74 33.43 2.08
2118 4421 2.502947 TGGAGCTGATTCAGTGCACTAT 59.497 45.455 21.20 10.83 33.43 2.12
2119 4422 1.901833 TGGAGCTGATTCAGTGCACTA 59.098 47.619 21.20 5.19 33.43 2.74
2120 4423 0.689055 TGGAGCTGATTCAGTGCACT 59.311 50.000 15.25 15.25 33.43 4.40
2121 4424 1.747709 ATGGAGCTGATTCAGTGCAC 58.252 50.000 9.40 9.40 33.43 4.57
2122 4425 2.490509 CAAATGGAGCTGATTCAGTGCA 59.509 45.455 14.90 12.60 33.43 4.57
2123 4426 2.490903 ACAAATGGAGCTGATTCAGTGC 59.509 45.455 14.90 7.89 33.43 4.40
2124 4427 4.778534 AACAAATGGAGCTGATTCAGTG 57.221 40.909 14.90 6.16 33.43 3.66
2125 4428 4.560108 GCAAACAAATGGAGCTGATTCAGT 60.560 41.667 14.90 2.39 33.43 3.41
2126 4429 3.924686 GCAAACAAATGGAGCTGATTCAG 59.075 43.478 9.40 9.40 34.12 3.02
2127 4430 3.306225 GGCAAACAAATGGAGCTGATTCA 60.306 43.478 0.00 0.00 0.00 2.57
2128 4431 3.256558 GGCAAACAAATGGAGCTGATTC 58.743 45.455 0.00 0.00 0.00 2.52
2129 4432 2.027837 GGGCAAACAAATGGAGCTGATT 60.028 45.455 0.00 0.00 0.00 2.57
2130 4433 1.551883 GGGCAAACAAATGGAGCTGAT 59.448 47.619 0.00 0.00 0.00 2.90
2131 4434 0.968405 GGGCAAACAAATGGAGCTGA 59.032 50.000 0.00 0.00 0.00 4.26
2132 4435 0.388907 CGGGCAAACAAATGGAGCTG 60.389 55.000 0.00 0.00 0.00 4.24
2133 4436 0.827507 ACGGGCAAACAAATGGAGCT 60.828 50.000 0.00 0.00 0.00 4.09
2134 4437 0.667184 CACGGGCAAACAAATGGAGC 60.667 55.000 0.00 0.00 0.00 4.70
2135 4438 0.673437 ACACGGGCAAACAAATGGAG 59.327 50.000 0.00 0.00 0.00 3.86
2136 4439 1.609555 GTACACGGGCAAACAAATGGA 59.390 47.619 0.00 0.00 0.00 3.41
2137 4440 1.338337 TGTACACGGGCAAACAAATGG 59.662 47.619 0.00 0.00 0.00 3.16
2138 4441 2.034053 AGTGTACACGGGCAAACAAATG 59.966 45.455 19.93 0.00 36.20 2.32
2139 4442 2.303175 AGTGTACACGGGCAAACAAAT 58.697 42.857 19.93 0.00 36.20 2.32
2140 4443 1.752683 AGTGTACACGGGCAAACAAA 58.247 45.000 19.93 0.00 36.20 2.83
2141 4444 2.485903 CTAGTGTACACGGGCAAACAA 58.514 47.619 19.93 0.00 36.20 2.83
2142 4445 1.874739 GCTAGTGTACACGGGCAAACA 60.875 52.381 28.26 8.19 35.20 2.83
2143 4446 0.794473 GCTAGTGTACACGGGCAAAC 59.206 55.000 28.26 11.77 35.20 2.93
2144 4447 0.393448 TGCTAGTGTACACGGGCAAA 59.607 50.000 31.30 18.23 39.30 3.68
2145 4448 0.037697 CTGCTAGTGTACACGGGCAA 60.038 55.000 32.00 22.21 40.66 4.52
2146 4449 1.589630 CTGCTAGTGTACACGGGCA 59.410 57.895 31.19 31.19 39.67 5.36
2147 4450 1.810030 GCTGCTAGTGTACACGGGC 60.810 63.158 27.26 27.26 36.20 6.13
2148 4451 0.458543 CTGCTGCTAGTGTACACGGG 60.459 60.000 19.93 16.61 36.20 5.28
2149 4452 0.458543 CCTGCTGCTAGTGTACACGG 60.459 60.000 19.93 16.94 36.20 4.94
2150 4453 0.526211 TCCTGCTGCTAGTGTACACG 59.474 55.000 19.93 8.36 36.20 4.49
2151 4454 1.737363 GCTCCTGCTGCTAGTGTACAC 60.737 57.143 18.56 18.56 36.03 2.90
2152 4455 0.532573 GCTCCTGCTGCTAGTGTACA 59.467 55.000 0.00 0.00 36.03 2.90
2153 4456 3.354131 GCTCCTGCTGCTAGTGTAC 57.646 57.895 0.00 0.00 36.03 2.90
2175 4478 0.463833 GCTAGTGTACATGGGGTGCC 60.464 60.000 0.00 0.00 0.00 5.01
2183 4486 3.854666 CACTCAAGCTGCTAGTGTACAT 58.145 45.455 19.64 0.00 36.66 2.29
2204 4508 1.926510 GCAGCCTTCACAAACACAAAC 59.073 47.619 0.00 0.00 0.00 2.93
2281 4585 8.649841 CATTTAAGTTGGCACATGACAAAATAG 58.350 33.333 0.63 0.00 45.92 1.73
2350 4654 6.620877 AGGTACATGTAATTGACAGGAAGA 57.379 37.500 7.25 0.00 42.62 2.87
2442 4746 7.309133 CCACATTAACAGTCTTTTATTGCAGGA 60.309 37.037 0.00 0.00 0.00 3.86
2532 4836 9.098355 CAGAACAAGTATATAAGCAAGCAGTTA 57.902 33.333 0.00 0.00 0.00 2.24
2587 4891 7.913789 AGGAAATCCACATTGTTAGTACTACA 58.086 34.615 0.91 1.76 38.89 2.74
2781 5093 7.340232 AGAATGGCAATCACAGTATTACAACAT 59.660 33.333 5.20 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.