Multiple sequence alignment - TraesCS6A01G343900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G343900 chr6A 100.000 3720 0 0 1 3720 578044817 578041098 0.000000e+00 6870.0
1 TraesCS6A01G343900 chr6A 91.304 46 3 1 1395 1439 212356446 212356491 1.120000e-05 62.1
2 TraesCS6A01G343900 chr6D 96.137 2045 71 5 954 2994 431275300 431273260 0.000000e+00 3332.0
3 TraesCS6A01G343900 chr6D 91.067 403 18 7 3335 3720 431273080 431272679 2.540000e-146 529.0
4 TraesCS6A01G343900 chr6D 87.269 432 43 9 215 642 431276855 431276432 2.010000e-132 483.0
5 TraesCS6A01G343900 chr6D 89.441 322 24 7 638 951 431276178 431275859 7.490000e-107 398.0
6 TraesCS6A01G343900 chr6D 92.350 183 14 0 3065 3247 431273261 431273079 1.020000e-65 261.0
7 TraesCS6A01G343900 chr6D 95.062 81 2 1 124 202 431277234 431277154 3.900000e-25 126.0
8 TraesCS6A01G343900 chr6D 91.250 80 5 2 3242 3319 146072911 146072832 1.410000e-19 108.0
9 TraesCS6A01G343900 chr6D 89.412 85 7 2 3239 3321 456406464 456406380 5.080000e-19 106.0
10 TraesCS6A01G343900 chr6B 93.821 1926 106 8 973 2895 650928786 650926871 0.000000e+00 2885.0
11 TraesCS6A01G343900 chr6B 86.025 322 30 7 644 951 650930545 650930225 7.700000e-87 331.0
12 TraesCS6A01G343900 chr7D 93.182 132 9 0 1308 1439 173115400 173115531 1.050000e-45 195.0
13 TraesCS6A01G343900 chr1D 95.146 103 4 1 1337 1439 167635972 167635871 1.070000e-35 161.0
14 TraesCS6A01G343900 chr5D 94.898 98 5 0 1342 1439 510219201 510219104 1.790000e-33 154.0
15 TraesCS6A01G343900 chr5D 92.857 84 4 2 3238 3319 18193880 18193797 1.810000e-23 121.0
16 TraesCS6A01G343900 chr5D 87.255 102 11 2 3242 3341 549021757 549021656 8.440000e-22 115.0
17 TraesCS6A01G343900 chr5D 95.714 70 2 1 3251 3319 509559288 509559219 1.090000e-20 111.0
18 TraesCS6A01G343900 chr5D 88.043 92 8 3 3248 3336 41115995 41116086 5.080000e-19 106.0
19 TraesCS6A01G343900 chr2D 94.845 97 5 0 1343 1439 154172885 154172789 6.430000e-33 152.0
20 TraesCS6A01G343900 chr2D 95.714 70 2 1 3251 3319 629726119 629726050 1.090000e-20 111.0
21 TraesCS6A01G343900 chr3D 94.444 72 4 0 3248 3319 562693537 562693608 1.090000e-20 111.0
22 TraesCS6A01G343900 chr2A 92.308 78 4 2 3242 3317 459156562 459156639 3.930000e-20 110.0
23 TraesCS6A01G343900 chr5A 91.304 46 3 1 1395 1439 625752314 625752269 1.120000e-05 62.1
24 TraesCS6A01G343900 chrUn 94.737 38 2 0 1402 1439 129541126 129541163 4.010000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G343900 chr6A 578041098 578044817 3719 True 6870.000000 6870 100.000000 1 3720 1 chr6A.!!$R1 3719
1 TraesCS6A01G343900 chr6D 431272679 431277234 4555 True 854.833333 3332 91.887667 124 3720 6 chr6D.!!$R3 3596
2 TraesCS6A01G343900 chr6B 650926871 650930545 3674 True 1608.000000 2885 89.923000 644 2895 2 chr6B.!!$R1 2251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.036671 AGAGCCGTTCCCGTAAAAGG 60.037 55.0 0.0 0.0 0.0 3.11 F
104 105 0.391597 AGGCGAAAGAGACGAACCAA 59.608 50.0 0.0 0.0 0.0 3.67 F
105 106 0.511653 GGCGAAAGAGACGAACCAAC 59.488 55.0 0.0 0.0 0.0 3.77 F
984 3070 0.541296 ATTTGCTGCTCTGTGGGCTT 60.541 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 3799 1.444553 CTTGAGTCCGAGCACGTCC 60.445 63.158 2.18 0.0 37.88 4.79 R
1974 4063 1.576356 CGAAGCTGAGTAATGCCTCC 58.424 55.000 0.00 0.0 0.00 4.30 R
2073 4162 3.366374 GGTTGAAGAAGTATTGCTGTGCC 60.366 47.826 0.00 0.0 0.00 5.01 R
2976 5066 0.545309 AGTGCCCCTCTGCTTGTAGA 60.545 55.000 0.00 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.962569 GGCAAAAGAGCCGTTCCC 59.037 61.111 0.00 0.00 46.12 3.97
29 30 2.561373 GCAAAAGAGCCGTTCCCG 59.439 61.111 0.00 0.00 0.00 5.14
30 31 2.258726 GCAAAAGAGCCGTTCCCGT 61.259 57.895 0.00 0.00 0.00 5.28
31 32 0.952010 GCAAAAGAGCCGTTCCCGTA 60.952 55.000 0.00 0.00 0.00 4.02
32 33 1.515081 CAAAAGAGCCGTTCCCGTAA 58.485 50.000 0.00 0.00 0.00 3.18
33 34 1.874872 CAAAAGAGCCGTTCCCGTAAA 59.125 47.619 0.00 0.00 0.00 2.01
34 35 2.259266 AAAGAGCCGTTCCCGTAAAA 57.741 45.000 0.00 0.00 0.00 1.52
35 36 1.804601 AAGAGCCGTTCCCGTAAAAG 58.195 50.000 0.00 0.00 0.00 2.27
36 37 0.036671 AGAGCCGTTCCCGTAAAAGG 60.037 55.000 0.00 0.00 0.00 3.11
47 48 2.822764 CCGTAAAAGGGAGAGGAATCG 58.177 52.381 0.00 0.00 0.00 3.34
48 49 2.429610 CCGTAAAAGGGAGAGGAATCGA 59.570 50.000 0.00 0.00 0.00 3.59
49 50 3.118884 CCGTAAAAGGGAGAGGAATCGAA 60.119 47.826 0.00 0.00 0.00 3.71
50 51 4.443034 CCGTAAAAGGGAGAGGAATCGAAT 60.443 45.833 0.00 0.00 0.00 3.34
51 52 4.508124 CGTAAAAGGGAGAGGAATCGAATG 59.492 45.833 0.00 0.00 0.00 2.67
52 53 4.576330 AAAAGGGAGAGGAATCGAATGT 57.424 40.909 0.00 0.00 0.00 2.71
53 54 3.550437 AAGGGAGAGGAATCGAATGTG 57.450 47.619 0.00 0.00 0.00 3.21
54 55 1.139853 AGGGAGAGGAATCGAATGTGC 59.860 52.381 0.00 0.00 0.00 4.57
55 56 1.587547 GGAGAGGAATCGAATGTGCC 58.412 55.000 0.00 0.00 0.00 5.01
56 57 1.139853 GGAGAGGAATCGAATGTGCCT 59.860 52.381 0.00 0.00 0.00 4.75
57 58 2.420687 GGAGAGGAATCGAATGTGCCTT 60.421 50.000 0.00 0.00 0.00 4.35
58 59 2.611292 GAGAGGAATCGAATGTGCCTTG 59.389 50.000 0.00 0.00 0.00 3.61
59 60 2.026822 AGAGGAATCGAATGTGCCTTGT 60.027 45.455 0.00 0.00 0.00 3.16
60 61 2.086869 AGGAATCGAATGTGCCTTGTG 58.913 47.619 0.00 0.00 0.00 3.33
61 62 2.083774 GGAATCGAATGTGCCTTGTGA 58.916 47.619 0.00 0.00 0.00 3.58
62 63 2.684881 GGAATCGAATGTGCCTTGTGAT 59.315 45.455 0.00 0.00 0.00 3.06
63 64 3.129287 GGAATCGAATGTGCCTTGTGATT 59.871 43.478 0.00 0.00 0.00 2.57
64 65 4.346129 GAATCGAATGTGCCTTGTGATTC 58.654 43.478 0.00 0.00 35.16 2.52
65 66 3.057969 TCGAATGTGCCTTGTGATTCT 57.942 42.857 0.00 0.00 0.00 2.40
66 67 2.743664 TCGAATGTGCCTTGTGATTCTG 59.256 45.455 0.00 0.00 0.00 3.02
67 68 2.730090 CGAATGTGCCTTGTGATTCTGC 60.730 50.000 0.00 0.00 0.00 4.26
68 69 2.211250 ATGTGCCTTGTGATTCTGCT 57.789 45.000 0.00 0.00 0.00 4.24
69 70 1.527034 TGTGCCTTGTGATTCTGCTC 58.473 50.000 0.00 0.00 0.00 4.26
70 71 0.807496 GTGCCTTGTGATTCTGCTCC 59.193 55.000 0.00 0.00 0.00 4.70
71 72 0.401356 TGCCTTGTGATTCTGCTCCA 59.599 50.000 0.00 0.00 0.00 3.86
72 73 1.005097 TGCCTTGTGATTCTGCTCCAT 59.995 47.619 0.00 0.00 0.00 3.41
73 74 1.674962 GCCTTGTGATTCTGCTCCATC 59.325 52.381 0.00 0.00 0.00 3.51
74 75 1.938577 CCTTGTGATTCTGCTCCATCG 59.061 52.381 0.00 0.00 0.00 3.84
75 76 2.625737 CTTGTGATTCTGCTCCATCGT 58.374 47.619 0.00 0.00 0.00 3.73
76 77 2.014335 TGTGATTCTGCTCCATCGTG 57.986 50.000 0.00 0.00 0.00 4.35
77 78 1.550072 TGTGATTCTGCTCCATCGTGA 59.450 47.619 0.00 0.00 0.00 4.35
78 79 1.929836 GTGATTCTGCTCCATCGTGAC 59.070 52.381 0.00 0.00 0.00 3.67
79 80 1.550072 TGATTCTGCTCCATCGTGACA 59.450 47.619 0.00 0.00 0.00 3.58
80 81 2.200067 GATTCTGCTCCATCGTGACAG 58.800 52.381 0.00 0.00 0.00 3.51
81 82 1.256812 TTCTGCTCCATCGTGACAGA 58.743 50.000 0.00 0.00 35.67 3.41
82 83 0.813821 TCTGCTCCATCGTGACAGAG 59.186 55.000 0.00 0.00 32.65 3.35
83 84 0.813821 CTGCTCCATCGTGACAGAGA 59.186 55.000 2.95 0.00 0.00 3.10
84 85 1.408340 CTGCTCCATCGTGACAGAGAT 59.592 52.381 2.95 0.00 0.00 2.75
85 86 2.620585 CTGCTCCATCGTGACAGAGATA 59.379 50.000 2.95 0.00 0.00 1.98
86 87 2.620585 TGCTCCATCGTGACAGAGATAG 59.379 50.000 2.95 0.00 0.00 2.08
87 88 2.030363 GCTCCATCGTGACAGAGATAGG 60.030 54.545 2.95 0.00 0.00 2.57
88 89 1.957177 TCCATCGTGACAGAGATAGGC 59.043 52.381 0.00 0.00 0.00 3.93
89 90 1.335415 CCATCGTGACAGAGATAGGCG 60.335 57.143 0.00 0.00 0.00 5.52
90 91 1.604278 CATCGTGACAGAGATAGGCGA 59.396 52.381 0.00 0.00 0.00 5.54
91 92 1.746470 TCGTGACAGAGATAGGCGAA 58.254 50.000 0.00 0.00 0.00 4.70
92 93 2.089201 TCGTGACAGAGATAGGCGAAA 58.911 47.619 0.00 0.00 0.00 3.46
93 94 2.097629 TCGTGACAGAGATAGGCGAAAG 59.902 50.000 0.00 0.00 0.00 2.62
94 95 2.097629 CGTGACAGAGATAGGCGAAAGA 59.902 50.000 0.00 0.00 0.00 2.52
95 96 3.701241 GTGACAGAGATAGGCGAAAGAG 58.299 50.000 0.00 0.00 0.00 2.85
96 97 3.378742 GTGACAGAGATAGGCGAAAGAGA 59.621 47.826 0.00 0.00 0.00 3.10
97 98 3.378742 TGACAGAGATAGGCGAAAGAGAC 59.621 47.826 0.00 0.00 0.00 3.36
98 99 2.356382 ACAGAGATAGGCGAAAGAGACG 59.644 50.000 0.00 0.00 0.00 4.18
99 100 2.614520 CAGAGATAGGCGAAAGAGACGA 59.385 50.000 0.00 0.00 0.00 4.20
100 101 3.065510 CAGAGATAGGCGAAAGAGACGAA 59.934 47.826 0.00 0.00 0.00 3.85
101 102 3.065648 AGAGATAGGCGAAAGAGACGAAC 59.934 47.826 0.00 0.00 0.00 3.95
102 103 2.099427 AGATAGGCGAAAGAGACGAACC 59.901 50.000 0.00 0.00 0.00 3.62
103 104 1.250328 TAGGCGAAAGAGACGAACCA 58.750 50.000 0.00 0.00 0.00 3.67
104 105 0.391597 AGGCGAAAGAGACGAACCAA 59.608 50.000 0.00 0.00 0.00 3.67
105 106 0.511653 GGCGAAAGAGACGAACCAAC 59.488 55.000 0.00 0.00 0.00 3.77
106 107 1.214367 GCGAAAGAGACGAACCAACA 58.786 50.000 0.00 0.00 0.00 3.33
107 108 1.595794 GCGAAAGAGACGAACCAACAA 59.404 47.619 0.00 0.00 0.00 2.83
108 109 2.031191 GCGAAAGAGACGAACCAACAAA 59.969 45.455 0.00 0.00 0.00 2.83
109 110 3.604392 CGAAAGAGACGAACCAACAAAC 58.396 45.455 0.00 0.00 0.00 2.93
110 111 3.545426 CGAAAGAGACGAACCAACAAACC 60.545 47.826 0.00 0.00 0.00 3.27
111 112 1.578583 AGAGACGAACCAACAAACCG 58.421 50.000 0.00 0.00 0.00 4.44
112 113 1.137479 AGAGACGAACCAACAAACCGA 59.863 47.619 0.00 0.00 0.00 4.69
113 114 2.140717 GAGACGAACCAACAAACCGAT 58.859 47.619 0.00 0.00 0.00 4.18
114 115 2.140717 AGACGAACCAACAAACCGATC 58.859 47.619 0.00 0.00 0.00 3.69
115 116 1.196127 GACGAACCAACAAACCGATCC 59.804 52.381 0.00 0.00 0.00 3.36
116 117 1.231221 CGAACCAACAAACCGATCCA 58.769 50.000 0.00 0.00 0.00 3.41
117 118 1.810151 CGAACCAACAAACCGATCCAT 59.190 47.619 0.00 0.00 0.00 3.41
118 119 2.159572 CGAACCAACAAACCGATCCATC 60.160 50.000 0.00 0.00 0.00 3.51
119 120 2.577606 ACCAACAAACCGATCCATCA 57.422 45.000 0.00 0.00 0.00 3.07
120 121 2.159382 ACCAACAAACCGATCCATCAC 58.841 47.619 0.00 0.00 0.00 3.06
121 122 1.472480 CCAACAAACCGATCCATCACC 59.528 52.381 0.00 0.00 0.00 4.02
122 123 2.158559 CAACAAACCGATCCATCACCA 58.841 47.619 0.00 0.00 0.00 4.17
170 173 1.328439 GAAGTACGCACACTCTCACG 58.672 55.000 0.00 0.00 0.00 4.35
202 205 1.148498 CGGGAGATAGGCCAAACCC 59.852 63.158 5.01 9.44 40.58 4.11
204 207 0.629058 GGGAGATAGGCCAAACCCAA 59.371 55.000 5.01 0.00 40.58 4.12
205 208 1.006639 GGGAGATAGGCCAAACCCAAA 59.993 52.381 5.01 0.00 40.58 3.28
206 209 2.359249 GGGAGATAGGCCAAACCCAAAT 60.359 50.000 5.01 0.00 40.58 2.32
207 210 3.374764 GGAGATAGGCCAAACCCAAATT 58.625 45.455 5.01 0.00 40.58 1.82
209 212 4.225042 GGAGATAGGCCAAACCCAAATTTT 59.775 41.667 5.01 0.00 40.58 1.82
211 214 6.070481 GGAGATAGGCCAAACCCAAATTTTAA 60.070 38.462 5.01 0.00 40.58 1.52
212 215 7.323052 AGATAGGCCAAACCCAAATTTTAAA 57.677 32.000 5.01 0.00 40.58 1.52
213 216 7.394016 AGATAGGCCAAACCCAAATTTTAAAG 58.606 34.615 5.01 0.00 40.58 1.85
270 559 1.186200 GGGGGAACAATCCTTTCTGC 58.814 55.000 0.00 0.00 45.77 4.26
283 572 7.042119 ACAATCCTTTCTGCGGTTTTTATTTTG 60.042 33.333 0.00 0.00 0.00 2.44
312 601 6.968263 TCATGGTTGTCTGGTTTTATTTCA 57.032 33.333 0.00 0.00 0.00 2.69
322 611 3.970640 TGGTTTTATTTCAGCCTGGGTTT 59.029 39.130 0.00 0.00 0.00 3.27
332 621 1.630878 AGCCTGGGTTTCTCTCGATTT 59.369 47.619 0.00 0.00 0.00 2.17
339 628 6.072112 TGGGTTTCTCTCGATTTTTCTTTG 57.928 37.500 0.00 0.00 0.00 2.77
350 641 8.580431 TCTCGATTTTTCTTTGTTTTCGTTTTC 58.420 29.630 0.00 0.00 0.00 2.29
351 642 7.668190 TCGATTTTTCTTTGTTTTCGTTTTCC 58.332 30.769 0.00 0.00 0.00 3.13
352 643 7.328737 TCGATTTTTCTTTGTTTTCGTTTTCCA 59.671 29.630 0.00 0.00 0.00 3.53
360 651 7.952637 TCTTTGTTTTCGTTTTCCAAATTTTCG 59.047 29.630 0.00 0.00 0.00 3.46
367 658 7.527084 TCGTTTTCCAAATTTTCGTTCATTT 57.473 28.000 0.00 0.00 0.00 2.32
368 659 8.630278 TCGTTTTCCAAATTTTCGTTCATTTA 57.370 26.923 0.00 0.00 0.00 1.40
425 716 8.879342 TGAACTTCTTTTTCAAACTTGTGAAA 57.121 26.923 0.00 0.00 43.92 2.69
443 734 6.713520 TGTGAAAAATTTTCTTGCAAATCCG 58.286 32.000 17.92 0.00 0.00 4.18
445 736 7.492669 TGTGAAAAATTTTCTTGCAAATCCGTA 59.507 29.630 17.92 0.00 0.00 4.02
451 742 8.432110 AATTTTCTTGCAAATCCGTAAACTTT 57.568 26.923 0.00 0.00 0.00 2.66
453 744 7.458038 TTTCTTGCAAATCCGTAAACTTTTC 57.542 32.000 0.00 0.00 0.00 2.29
457 748 7.762159 TCTTGCAAATCCGTAAACTTTTCTTTT 59.238 29.630 0.00 0.00 0.00 2.27
463 754 9.955208 AAATCCGTAAACTTTTCTTTTCGTATT 57.045 25.926 0.00 0.00 0.00 1.89
473 764 7.865889 ACTTTTCTTTTCGTATTTTCATGACCC 59.134 33.333 0.00 0.00 0.00 4.46
474 765 5.890424 TCTTTTCGTATTTTCATGACCCC 57.110 39.130 0.00 0.00 0.00 4.95
475 766 5.317808 TCTTTTCGTATTTTCATGACCCCA 58.682 37.500 0.00 0.00 0.00 4.96
476 767 5.949354 TCTTTTCGTATTTTCATGACCCCAT 59.051 36.000 0.00 0.00 0.00 4.00
479 770 5.828299 TCGTATTTTCATGACCCCATTTC 57.172 39.130 0.00 0.00 0.00 2.17
488 779 6.293004 TCATGACCCCATTTCCAAATTTAC 57.707 37.500 0.00 0.00 0.00 2.01
489 780 5.188751 TCATGACCCCATTTCCAAATTTACC 59.811 40.000 0.00 0.00 0.00 2.85
500 791 9.344309 CATTTCCAAATTTACCATCATTTTTGC 57.656 29.630 0.00 0.00 0.00 3.68
537 829 7.697352 TTGCAAACTCATGAACTTATTTGTG 57.303 32.000 0.00 0.00 31.27 3.33
541 833 9.065871 GCAAACTCATGAACTTATTTGTGTATC 57.934 33.333 0.00 0.00 31.27 2.24
639 931 9.786105 AATTTTGAAAATTCAATGGTCAACAAC 57.214 25.926 9.92 0.00 45.65 3.32
642 934 7.769272 TGAAAATTCAATGGTCAACAACTTC 57.231 32.000 0.00 0.00 33.55 3.01
877 1435 2.669569 GCAGAGCCCGAAAGCACA 60.670 61.111 0.00 0.00 34.23 4.57
893 1451 1.472480 GCACAGTTGTGGTTGTCACTT 59.528 47.619 13.63 0.00 46.20 3.16
951 1518 2.969628 AGGTTATGCTCACGGAAGAG 57.030 50.000 0.00 0.00 38.68 2.85
952 1519 1.482593 AGGTTATGCTCACGGAAGAGG 59.517 52.381 4.36 0.00 36.15 3.69
968 3054 2.273619 AGAGGCTCTGGAGGAACATTT 58.726 47.619 17.96 0.00 0.00 2.32
969 3055 2.026449 AGAGGCTCTGGAGGAACATTTG 60.026 50.000 17.96 0.00 0.00 2.32
970 3056 0.813821 GGCTCTGGAGGAACATTTGC 59.186 55.000 0.00 0.00 0.00 3.68
971 3057 1.615384 GGCTCTGGAGGAACATTTGCT 60.615 52.381 0.00 0.00 0.00 3.91
972 3058 1.471684 GCTCTGGAGGAACATTTGCTG 59.528 52.381 0.00 0.00 0.00 4.41
973 3059 1.471684 CTCTGGAGGAACATTTGCTGC 59.528 52.381 0.00 0.00 39.82 5.25
974 3060 1.074405 TCTGGAGGAACATTTGCTGCT 59.926 47.619 0.00 0.00 40.07 4.24
984 3070 0.541296 ATTTGCTGCTCTGTGGGCTT 60.541 50.000 0.00 0.00 0.00 4.35
985 3071 0.756442 TTTGCTGCTCTGTGGGCTTT 60.756 50.000 0.00 0.00 0.00 3.51
1431 3520 3.057547 CTCCTCCCTCGACGTGCTG 62.058 68.421 0.00 0.00 0.00 4.41
1710 3799 4.253257 GTCCTCGAGCGCTACCCG 62.253 72.222 11.50 10.86 40.75 5.28
1716 3805 4.849329 GAGCGCTACCCGGACGTG 62.849 72.222 11.50 0.00 37.44 4.49
1755 3844 1.742880 CACCATCAGCACCTCCGTG 60.743 63.158 0.00 0.00 43.35 4.94
1959 4048 2.625314 TGGCTATGATCTTGAGGAGACG 59.375 50.000 0.00 0.00 37.17 4.18
1962 4051 3.821600 GCTATGATCTTGAGGAGACGGTA 59.178 47.826 0.00 0.00 37.17 4.02
1974 4063 3.818773 AGGAGACGGTAAAACCAAATGTG 59.181 43.478 0.00 0.00 38.47 3.21
2028 4117 0.609681 TGCTGCCACTCATGATTGCA 60.610 50.000 7.52 10.00 0.00 4.08
2073 4162 1.363744 CCCTGAAAGTGAAGCTAGCG 58.636 55.000 9.55 0.00 0.00 4.26
2082 4171 2.032528 AAGCTAGCGGCACAGCAA 59.967 55.556 23.05 0.00 44.79 3.91
2148 4237 1.347817 GAGCTGTCGAGAAACTGCCG 61.348 60.000 0.00 0.00 42.98 5.69
2235 4324 3.071457 TCACTGATGATGATATTGGGCGT 59.929 43.478 0.00 0.00 0.00 5.68
2256 4345 3.260888 TTGATCCGGTGCCCCCAA 61.261 61.111 0.00 0.00 0.00 4.12
2263 4352 1.604147 CCGGTGCCCCCAAATTCTTC 61.604 60.000 0.00 0.00 0.00 2.87
2274 4363 2.165030 CCAAATTCTTCTGCTGCGGAAT 59.835 45.455 23.03 12.75 0.00 3.01
2451 4540 2.352127 GGATTGGTTTCTGAACTGCAGC 60.352 50.000 15.27 0.00 44.52 5.25
2583 4672 5.121454 GTCGGATGATGATAATGAGGAAAGC 59.879 44.000 0.00 0.00 0.00 3.51
2660 4749 1.140852 TGTTGCTGACCTGTTGTAGCT 59.859 47.619 0.00 0.00 37.10 3.32
2676 4765 7.847096 TGTTGTAGCTTTCCATCAGTCTAATA 58.153 34.615 0.00 0.00 0.00 0.98
2800 4889 3.360249 AGTGAGTTTGAGTTTGCATGC 57.640 42.857 11.82 11.82 0.00 4.06
2838 4928 5.659079 GCAGTATCTATTCTAGCCCTGGTAT 59.341 44.000 0.00 0.00 0.00 2.73
2851 4941 4.528206 AGCCCTGGTATTTTTCAAAGGAAG 59.472 41.667 0.00 0.00 33.82 3.46
2913 5003 8.682936 AGTTAGTGATGAAGAACATTCAACTT 57.317 30.769 1.54 0.00 39.56 2.66
2936 5026 6.102006 TGTCTAATTTTCCGAGCATAAACG 57.898 37.500 0.00 0.00 0.00 3.60
2946 5036 2.605823 CGAGCATAAACGGCCACAAAAA 60.606 45.455 2.24 0.00 0.00 1.94
2956 5046 3.807071 ACGGCCACAAAAATTTTAAGCAG 59.193 39.130 2.24 8.10 0.00 4.24
2976 5066 4.574013 GCAGTTTCATGCTACTCTGCTAAT 59.426 41.667 15.39 0.00 43.07 1.73
2980 5070 7.168972 CAGTTTCATGCTACTCTGCTAATCTAC 59.831 40.741 0.00 0.00 0.00 2.59
2994 5084 0.543749 ATCTACAAGCAGAGGGGCAC 59.456 55.000 0.00 0.00 35.83 5.01
2995 5085 0.545309 TCTACAAGCAGAGGGGCACT 60.545 55.000 0.00 0.00 35.83 4.40
2996 5086 0.392193 CTACAAGCAGAGGGGCACTG 60.392 60.000 0.00 0.00 38.27 3.66
2997 5087 1.127567 TACAAGCAGAGGGGCACTGT 61.128 55.000 0.00 0.00 37.64 3.55
2998 5088 1.228367 CAAGCAGAGGGGCACTGTT 60.228 57.895 0.00 0.00 37.64 3.16
2999 5089 1.228367 AAGCAGAGGGGCACTGTTG 60.228 57.895 0.00 0.00 37.64 3.33
3015 5105 6.801539 CACTGTTGCAAGGAATAAGTAAGA 57.198 37.500 0.00 0.00 0.00 2.10
3016 5106 7.202016 CACTGTTGCAAGGAATAAGTAAGAA 57.798 36.000 0.00 0.00 0.00 2.52
3017 5107 7.078228 CACTGTTGCAAGGAATAAGTAAGAAC 58.922 38.462 0.00 0.00 0.00 3.01
3018 5108 6.998673 ACTGTTGCAAGGAATAAGTAAGAACT 59.001 34.615 0.00 0.00 37.65 3.01
3019 5109 7.041098 ACTGTTGCAAGGAATAAGTAAGAACTG 60.041 37.037 0.00 0.00 35.62 3.16
3020 5110 6.995686 TGTTGCAAGGAATAAGTAAGAACTGA 59.004 34.615 0.00 0.00 35.62 3.41
3021 5111 7.500892 TGTTGCAAGGAATAAGTAAGAACTGAA 59.499 33.333 0.00 0.00 35.62 3.02
3022 5112 7.672983 TGCAAGGAATAAGTAAGAACTGAAG 57.327 36.000 0.00 0.00 35.62 3.02
3023 5113 6.655003 TGCAAGGAATAAGTAAGAACTGAAGG 59.345 38.462 0.00 0.00 35.62 3.46
3024 5114 6.094186 GCAAGGAATAAGTAAGAACTGAAGGG 59.906 42.308 0.00 0.00 35.62 3.95
3025 5115 6.954352 AGGAATAAGTAAGAACTGAAGGGT 57.046 37.500 0.00 0.00 35.62 4.34
3026 5116 7.331089 AGGAATAAGTAAGAACTGAAGGGTT 57.669 36.000 0.00 0.00 35.62 4.11
3027 5117 8.445361 AGGAATAAGTAAGAACTGAAGGGTTA 57.555 34.615 0.00 0.00 35.62 2.85
3028 5118 8.319881 AGGAATAAGTAAGAACTGAAGGGTTAC 58.680 37.037 0.00 0.00 35.62 2.50
3029 5119 8.319881 GGAATAAGTAAGAACTGAAGGGTTACT 58.680 37.037 0.00 0.00 35.62 2.24
3032 5122 7.852550 AAGTAAGAACTGAAGGGTTACTACT 57.147 36.000 0.00 0.00 35.62 2.57
3033 5123 7.852550 AGTAAGAACTGAAGGGTTACTACTT 57.147 36.000 0.00 0.00 33.24 2.24
3034 5124 8.946797 AGTAAGAACTGAAGGGTTACTACTTA 57.053 34.615 0.00 0.00 33.24 2.24
3035 5125 9.544579 AGTAAGAACTGAAGGGTTACTACTTAT 57.455 33.333 0.00 0.00 33.24 1.73
3038 5128 8.431910 AGAACTGAAGGGTTACTACTTATTGA 57.568 34.615 0.00 0.00 0.00 2.57
3039 5129 8.877195 AGAACTGAAGGGTTACTACTTATTGAA 58.123 33.333 0.00 0.00 0.00 2.69
3040 5130 8.843885 AACTGAAGGGTTACTACTTATTGAAC 57.156 34.615 0.00 0.00 0.00 3.18
3041 5131 8.203681 ACTGAAGGGTTACTACTTATTGAACT 57.796 34.615 0.00 0.00 0.00 3.01
3042 5132 8.095169 ACTGAAGGGTTACTACTTATTGAACTG 58.905 37.037 0.00 0.00 0.00 3.16
3043 5133 6.877322 TGAAGGGTTACTACTTATTGAACTGC 59.123 38.462 0.00 0.00 0.00 4.40
3044 5134 6.368779 AGGGTTACTACTTATTGAACTGCA 57.631 37.500 0.00 0.00 0.00 4.41
3045 5135 6.407202 AGGGTTACTACTTATTGAACTGCAG 58.593 40.000 13.48 13.48 0.00 4.41
3046 5136 5.064834 GGGTTACTACTTATTGAACTGCAGC 59.935 44.000 15.27 0.00 0.00 5.25
3047 5137 5.064834 GGTTACTACTTATTGAACTGCAGCC 59.935 44.000 15.27 6.70 0.00 4.85
3048 5138 4.286297 ACTACTTATTGAACTGCAGCCA 57.714 40.909 15.27 9.63 0.00 4.75
3049 5139 4.256920 ACTACTTATTGAACTGCAGCCAG 58.743 43.478 15.27 3.11 44.80 4.85
3050 5140 3.423539 ACTTATTGAACTGCAGCCAGA 57.576 42.857 15.27 0.00 41.77 3.86
3051 5141 3.754965 ACTTATTGAACTGCAGCCAGAA 58.245 40.909 15.27 9.24 41.77 3.02
3052 5142 4.144297 ACTTATTGAACTGCAGCCAGAAA 58.856 39.130 15.27 9.10 41.77 2.52
3053 5143 4.768968 ACTTATTGAACTGCAGCCAGAAAT 59.231 37.500 15.27 9.47 41.77 2.17
3054 5144 3.587797 ATTGAACTGCAGCCAGAAATG 57.412 42.857 15.27 0.00 41.77 2.32
3055 5145 1.985473 TGAACTGCAGCCAGAAATGT 58.015 45.000 15.27 0.00 41.77 2.71
3056 5146 1.610038 TGAACTGCAGCCAGAAATGTG 59.390 47.619 15.27 0.00 41.77 3.21
3057 5147 1.610522 GAACTGCAGCCAGAAATGTGT 59.389 47.619 15.27 0.00 41.77 3.72
3058 5148 0.956633 ACTGCAGCCAGAAATGTGTG 59.043 50.000 15.27 0.00 41.77 3.82
3059 5149 0.242825 CTGCAGCCAGAAATGTGTGG 59.757 55.000 0.00 0.00 41.77 4.17
3060 5150 1.180456 TGCAGCCAGAAATGTGTGGG 61.180 55.000 0.39 0.00 38.66 4.61
3062 5152 1.886222 GCAGCCAGAAATGTGTGGGTA 60.886 52.381 2.97 0.00 46.59 3.69
3063 5153 2.513753 CAGCCAGAAATGTGTGGGTAA 58.486 47.619 2.97 0.00 46.59 2.85
3064 5154 2.228822 CAGCCAGAAATGTGTGGGTAAC 59.771 50.000 2.97 0.00 46.59 2.50
3065 5155 2.158534 AGCCAGAAATGTGTGGGTAACA 60.159 45.455 1.00 0.00 46.46 2.41
3074 5164 4.261578 TGTGTGGGTAACAGTAAGTAGC 57.738 45.455 0.00 0.00 40.26 3.58
3080 5170 4.758165 TGGGTAACAGTAAGTAGCTTTTGC 59.242 41.667 0.00 0.00 43.00 3.68
3108 5198 3.942115 GCTCCTTGAGAAATTACAGGGAC 59.058 47.826 0.00 0.00 37.36 4.46
3116 5206 4.030913 AGAAATTACAGGGACGAGATGGA 58.969 43.478 0.00 0.00 0.00 3.41
3117 5207 4.469945 AGAAATTACAGGGACGAGATGGAA 59.530 41.667 0.00 0.00 0.00 3.53
3118 5208 4.408182 AATTACAGGGACGAGATGGAAG 57.592 45.455 0.00 0.00 0.00 3.46
3190 5280 8.348285 AGATCTCTATAGTTCTATGTTCTGCC 57.652 38.462 0.00 0.00 31.33 4.85
3253 5343 9.614792 ACCTTGTTACTTATGATTTATCACTCC 57.385 33.333 0.00 0.00 40.03 3.85
3254 5344 8.765219 CCTTGTTACTTATGATTTATCACTCCG 58.235 37.037 0.00 0.00 40.03 4.63
3255 5345 9.314321 CTTGTTACTTATGATTTATCACTCCGT 57.686 33.333 0.00 0.00 40.03 4.69
3256 5346 9.661563 TTGTTACTTATGATTTATCACTCCGTT 57.338 29.630 0.00 0.00 40.03 4.44
3257 5347 9.309516 TGTTACTTATGATTTATCACTCCGTTC 57.690 33.333 0.00 0.00 40.03 3.95
3258 5348 8.762426 GTTACTTATGATTTATCACTCCGTTCC 58.238 37.037 0.00 0.00 40.03 3.62
3259 5349 6.884832 ACTTATGATTTATCACTCCGTTCCA 58.115 36.000 0.00 0.00 40.03 3.53
3260 5350 7.509546 ACTTATGATTTATCACTCCGTTCCAT 58.490 34.615 0.00 0.00 40.03 3.41
3261 5351 8.647796 ACTTATGATTTATCACTCCGTTCCATA 58.352 33.333 0.00 0.00 40.03 2.74
3262 5352 9.489084 CTTATGATTTATCACTCCGTTCCATAA 57.511 33.333 0.00 0.00 40.03 1.90
3271 5361 6.688578 TCACTCCGTTCCATAATATAAGAGC 58.311 40.000 0.00 0.00 0.00 4.09
3272 5362 5.573282 CACTCCGTTCCATAATATAAGAGCG 59.427 44.000 3.06 3.06 33.46 5.03
3273 5363 5.243283 ACTCCGTTCCATAATATAAGAGCGT 59.757 40.000 7.53 0.00 32.01 5.07
3274 5364 6.092955 TCCGTTCCATAATATAAGAGCGTT 57.907 37.500 7.53 0.00 32.01 4.84
3275 5365 6.518493 TCCGTTCCATAATATAAGAGCGTTT 58.482 36.000 7.53 0.00 32.01 3.60
3276 5366 6.987992 TCCGTTCCATAATATAAGAGCGTTTT 59.012 34.615 7.53 0.00 32.01 2.43
3277 5367 7.496591 TCCGTTCCATAATATAAGAGCGTTTTT 59.503 33.333 7.53 0.00 32.01 1.94
3278 5368 7.586300 CCGTTCCATAATATAAGAGCGTTTTTG 59.414 37.037 7.53 0.00 32.01 2.44
3279 5369 8.332464 CGTTCCATAATATAAGAGCGTTTTTGA 58.668 33.333 0.00 0.00 0.00 2.69
3280 5370 9.434559 GTTCCATAATATAAGAGCGTTTTTGAC 57.565 33.333 0.00 0.00 0.00 3.18
3281 5371 8.725405 TCCATAATATAAGAGCGTTTTTGACA 57.275 30.769 0.00 0.00 0.00 3.58
3282 5372 8.609176 TCCATAATATAAGAGCGTTTTTGACAC 58.391 33.333 0.00 0.00 0.00 3.67
3283 5373 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
3284 5374 9.638300 CATAATATAAGAGCGTTTTTGACACTC 57.362 33.333 0.00 0.00 37.64 3.51
3285 5375 7.667043 AATATAAGAGCGTTTTTGACACTCA 57.333 32.000 0.00 0.00 39.40 3.41
3286 5376 7.849804 ATATAAGAGCGTTTTTGACACTCAT 57.150 32.000 0.00 0.00 39.40 2.90
3287 5377 4.900635 AAGAGCGTTTTTGACACTCATT 57.099 36.364 0.00 0.00 39.40 2.57
3288 5378 7.667043 ATAAGAGCGTTTTTGACACTCATTA 57.333 32.000 0.00 0.00 39.40 1.90
3289 5379 6.371809 AAGAGCGTTTTTGACACTCATTAA 57.628 33.333 0.00 0.00 39.40 1.40
3290 5380 6.560253 AGAGCGTTTTTGACACTCATTAAT 57.440 33.333 0.00 0.00 39.40 1.40
3291 5381 6.373779 AGAGCGTTTTTGACACTCATTAATG 58.626 36.000 9.29 9.29 39.40 1.90
3292 5382 6.017109 AGAGCGTTTTTGACACTCATTAATGT 60.017 34.615 14.97 0.00 39.40 2.71
3293 5383 6.142817 AGCGTTTTTGACACTCATTAATGTC 58.857 36.000 14.97 7.57 44.56 3.06
3301 5391 6.362632 GACACTCATTAATGTCAAAAACGC 57.637 37.500 14.97 0.00 43.89 4.84
3302 5392 6.072112 ACACTCATTAATGTCAAAAACGCT 57.928 33.333 14.97 0.00 0.00 5.07
3303 5393 6.142817 ACACTCATTAATGTCAAAAACGCTC 58.857 36.000 14.97 0.00 0.00 5.03
3304 5394 6.017109 ACACTCATTAATGTCAAAAACGCTCT 60.017 34.615 14.97 0.00 0.00 4.09
3305 5395 6.857964 CACTCATTAATGTCAAAAACGCTCTT 59.142 34.615 14.97 0.00 0.00 2.85
3306 5396 8.015087 CACTCATTAATGTCAAAAACGCTCTTA 58.985 33.333 14.97 0.00 0.00 2.10
3307 5397 8.730680 ACTCATTAATGTCAAAAACGCTCTTAT 58.269 29.630 14.97 0.00 0.00 1.73
3314 5404 9.950680 AATGTCAAAAACGCTCTTATATTATGG 57.049 29.630 0.00 0.00 0.00 2.74
3315 5405 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
3316 5406 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3317 5407 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3318 5408 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3319 5409 5.717078 AACGCTCTTATATTATGGGACGA 57.283 39.130 0.00 0.00 0.00 4.20
3320 5410 5.717078 ACGCTCTTATATTATGGGACGAA 57.283 39.130 0.00 0.00 0.00 3.85
3321 5411 5.467705 ACGCTCTTATATTATGGGACGAAC 58.532 41.667 0.00 0.00 0.00 3.95
3322 5412 4.863131 CGCTCTTATATTATGGGACGAACC 59.137 45.833 0.00 0.00 38.08 3.62
3323 5413 4.863131 GCTCTTATATTATGGGACGAACCG 59.137 45.833 0.00 0.00 40.11 4.44
3324 5414 5.336213 GCTCTTATATTATGGGACGAACCGA 60.336 44.000 0.00 0.00 40.11 4.69
3325 5415 6.017400 TCTTATATTATGGGACGAACCGAC 57.983 41.667 0.00 0.00 40.11 4.79
3326 5416 2.780065 TATTATGGGACGAACCGACG 57.220 50.000 0.00 0.00 40.11 5.12
3327 5417 1.105457 ATTATGGGACGAACCGACGA 58.895 50.000 0.00 0.00 40.11 4.20
3328 5418 0.887247 TTATGGGACGAACCGACGAA 59.113 50.000 0.00 0.00 40.11 3.85
3329 5419 0.452987 TATGGGACGAACCGACGAAG 59.547 55.000 0.00 0.00 40.11 3.79
3330 5420 2.126189 GGGACGAACCGACGAAGG 60.126 66.667 0.00 0.00 40.11 3.46
3331 5421 2.126189 GGACGAACCGACGAAGGG 60.126 66.667 0.00 0.00 37.03 3.95
3332 5422 2.629656 GGACGAACCGACGAAGGGA 61.630 63.158 0.00 0.00 37.03 4.20
3333 5423 1.154073 GACGAACCGACGAAGGGAG 60.154 63.158 0.00 0.00 37.03 4.30
3346 5436 3.896272 ACGAAGGGAGTACTTCTCAAGTT 59.104 43.478 0.01 0.00 43.61 2.66
3416 5506 6.851330 GCTTATATATTGTTGGTTGTCTTCGC 59.149 38.462 0.00 0.00 0.00 4.70
3424 5514 2.151202 TGGTTGTCTTCGCTTGGAATC 58.849 47.619 0.00 0.00 33.26 2.52
3446 5536 3.365969 CGGAATTGGTTAAGTGTCCAAGC 60.366 47.826 0.00 0.00 45.12 4.01
3490 5580 4.347453 GTTGCCACCAGCCGCAAG 62.347 66.667 0.00 0.00 45.14 4.01
3521 5611 4.096003 GGTGCTGGCCTAAGCGGA 62.096 66.667 3.32 0.00 46.65 5.54
3523 5613 3.785859 TGCTGGCCTAAGCGGAGG 61.786 66.667 3.32 2.72 46.65 4.30
3524 5614 3.787001 GCTGGCCTAAGCGGAGGT 61.787 66.667 3.32 0.00 41.24 3.85
3525 5615 2.501610 CTGGCCTAAGCGGAGGTC 59.498 66.667 3.32 4.70 41.99 3.85
3526 5616 3.432051 CTGGCCTAAGCGGAGGTCG 62.432 68.421 3.32 0.00 44.84 4.79
3528 5618 2.104530 GCCTAAGCGGAGGTCGTC 59.895 66.667 8.53 0.00 41.72 4.20
3529 5619 2.408022 CCTAAGCGGAGGTCGTCG 59.592 66.667 0.00 0.00 41.72 5.12
3552 5659 3.741388 CGGTACATCCTCTGATTGTTCCC 60.741 52.174 0.00 0.00 0.00 3.97
3553 5660 3.456277 GGTACATCCTCTGATTGTTCCCT 59.544 47.826 0.00 0.00 0.00 4.20
3555 5662 2.915604 ACATCCTCTGATTGTTCCCTGT 59.084 45.455 0.00 0.00 0.00 4.00
3569 5676 1.704628 TCCCTGTGAAGGATGAAAGCA 59.295 47.619 0.00 0.00 0.00 3.91
3598 5705 5.355910 ACCTGTACATAATTTTAAGCGGGTG 59.644 40.000 0.00 0.00 33.60 4.61
3602 5709 5.418310 ACATAATTTTAAGCGGGTGATCG 57.582 39.130 0.00 0.00 0.00 3.69
3674 5781 2.512885 CGCTGCAAAGAAATGCTACTG 58.487 47.619 0.00 0.00 46.54 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.483188 CGATTCCTCTCCCTTTTACGGG 60.483 54.545 0.00 0.00 46.13 5.28
27 28 2.429610 TCGATTCCTCTCCCTTTTACGG 59.570 50.000 0.00 0.00 0.00 4.02
28 29 3.795623 TCGATTCCTCTCCCTTTTACG 57.204 47.619 0.00 0.00 0.00 3.18
29 30 5.294552 CACATTCGATTCCTCTCCCTTTTAC 59.705 44.000 0.00 0.00 0.00 2.01
30 31 5.428253 CACATTCGATTCCTCTCCCTTTTA 58.572 41.667 0.00 0.00 0.00 1.52
31 32 4.265073 CACATTCGATTCCTCTCCCTTTT 58.735 43.478 0.00 0.00 0.00 2.27
32 33 3.878778 CACATTCGATTCCTCTCCCTTT 58.121 45.455 0.00 0.00 0.00 3.11
33 34 2.420687 GCACATTCGATTCCTCTCCCTT 60.421 50.000 0.00 0.00 0.00 3.95
34 35 1.139853 GCACATTCGATTCCTCTCCCT 59.860 52.381 0.00 0.00 0.00 4.20
35 36 1.587547 GCACATTCGATTCCTCTCCC 58.412 55.000 0.00 0.00 0.00 4.30
36 37 1.139853 AGGCACATTCGATTCCTCTCC 59.860 52.381 0.00 0.00 0.00 3.71
37 38 2.611225 AGGCACATTCGATTCCTCTC 57.389 50.000 0.00 0.00 0.00 3.20
38 39 2.026822 ACAAGGCACATTCGATTCCTCT 60.027 45.455 0.00 0.00 0.00 3.69
39 40 2.096496 CACAAGGCACATTCGATTCCTC 59.904 50.000 0.00 0.00 0.00 3.71
40 41 2.086869 CACAAGGCACATTCGATTCCT 58.913 47.619 0.00 0.00 0.00 3.36
41 42 2.083774 TCACAAGGCACATTCGATTCC 58.916 47.619 0.00 0.00 0.00 3.01
42 43 4.095483 AGAATCACAAGGCACATTCGATTC 59.905 41.667 0.00 0.00 38.23 2.52
43 44 4.012374 AGAATCACAAGGCACATTCGATT 58.988 39.130 0.00 0.00 31.64 3.34
44 45 3.376234 CAGAATCACAAGGCACATTCGAT 59.624 43.478 0.00 0.00 31.64 3.59
45 46 2.743664 CAGAATCACAAGGCACATTCGA 59.256 45.455 0.00 0.00 31.64 3.71
46 47 2.730090 GCAGAATCACAAGGCACATTCG 60.730 50.000 0.00 0.00 31.64 3.34
47 48 2.490903 AGCAGAATCACAAGGCACATTC 59.509 45.455 0.00 0.00 0.00 2.67
48 49 2.490903 GAGCAGAATCACAAGGCACATT 59.509 45.455 0.00 0.00 0.00 2.71
49 50 2.089980 GAGCAGAATCACAAGGCACAT 58.910 47.619 0.00 0.00 0.00 3.21
50 51 1.527034 GAGCAGAATCACAAGGCACA 58.473 50.000 0.00 0.00 0.00 4.57
51 52 0.807496 GGAGCAGAATCACAAGGCAC 59.193 55.000 0.00 0.00 0.00 5.01
52 53 0.401356 TGGAGCAGAATCACAAGGCA 59.599 50.000 0.00 0.00 0.00 4.75
53 54 1.674962 GATGGAGCAGAATCACAAGGC 59.325 52.381 0.00 0.00 0.00 4.35
54 55 1.938577 CGATGGAGCAGAATCACAAGG 59.061 52.381 0.00 0.00 0.00 3.61
55 56 2.350804 CACGATGGAGCAGAATCACAAG 59.649 50.000 0.00 0.00 0.00 3.16
56 57 2.028203 TCACGATGGAGCAGAATCACAA 60.028 45.455 0.00 0.00 0.00 3.33
57 58 1.550072 TCACGATGGAGCAGAATCACA 59.450 47.619 0.00 0.00 0.00 3.58
58 59 1.929836 GTCACGATGGAGCAGAATCAC 59.070 52.381 0.00 0.00 0.00 3.06
59 60 1.550072 TGTCACGATGGAGCAGAATCA 59.450 47.619 0.00 0.00 0.00 2.57
60 61 2.159184 TCTGTCACGATGGAGCAGAATC 60.159 50.000 0.00 0.00 33.84 2.52
61 62 1.827344 TCTGTCACGATGGAGCAGAAT 59.173 47.619 0.00 0.00 33.84 2.40
62 63 1.203287 CTCTGTCACGATGGAGCAGAA 59.797 52.381 0.00 0.00 36.02 3.02
63 64 0.813821 CTCTGTCACGATGGAGCAGA 59.186 55.000 0.00 0.00 35.29 4.26
64 65 0.813821 TCTCTGTCACGATGGAGCAG 59.186 55.000 0.00 0.00 0.00 4.24
65 66 1.478631 ATCTCTGTCACGATGGAGCA 58.521 50.000 0.00 0.00 0.00 4.26
66 67 2.030363 CCTATCTCTGTCACGATGGAGC 60.030 54.545 0.00 0.00 0.00 4.70
67 68 2.030363 GCCTATCTCTGTCACGATGGAG 60.030 54.545 0.00 0.00 0.00 3.86
68 69 1.957177 GCCTATCTCTGTCACGATGGA 59.043 52.381 0.00 0.00 0.00 3.41
69 70 1.335415 CGCCTATCTCTGTCACGATGG 60.335 57.143 0.00 0.00 0.00 3.51
70 71 1.604278 TCGCCTATCTCTGTCACGATG 59.396 52.381 0.00 0.00 0.00 3.84
71 72 1.968704 TCGCCTATCTCTGTCACGAT 58.031 50.000 0.00 0.00 0.00 3.73
72 73 1.746470 TTCGCCTATCTCTGTCACGA 58.254 50.000 0.00 0.00 0.00 4.35
73 74 2.097629 TCTTTCGCCTATCTCTGTCACG 59.902 50.000 0.00 0.00 0.00 4.35
74 75 3.378742 TCTCTTTCGCCTATCTCTGTCAC 59.621 47.826 0.00 0.00 0.00 3.67
75 76 3.378742 GTCTCTTTCGCCTATCTCTGTCA 59.621 47.826 0.00 0.00 0.00 3.58
76 77 3.547214 CGTCTCTTTCGCCTATCTCTGTC 60.547 52.174 0.00 0.00 0.00 3.51
77 78 2.356382 CGTCTCTTTCGCCTATCTCTGT 59.644 50.000 0.00 0.00 0.00 3.41
78 79 2.614520 TCGTCTCTTTCGCCTATCTCTG 59.385 50.000 0.00 0.00 0.00 3.35
79 80 2.920524 TCGTCTCTTTCGCCTATCTCT 58.079 47.619 0.00 0.00 0.00 3.10
80 81 3.364946 GTTCGTCTCTTTCGCCTATCTC 58.635 50.000 0.00 0.00 0.00 2.75
81 82 2.099427 GGTTCGTCTCTTTCGCCTATCT 59.901 50.000 0.00 0.00 0.00 1.98
82 83 2.159282 TGGTTCGTCTCTTTCGCCTATC 60.159 50.000 0.00 0.00 0.00 2.08
83 84 1.822990 TGGTTCGTCTCTTTCGCCTAT 59.177 47.619 0.00 0.00 0.00 2.57
84 85 1.250328 TGGTTCGTCTCTTTCGCCTA 58.750 50.000 0.00 0.00 0.00 3.93
85 86 0.391597 TTGGTTCGTCTCTTTCGCCT 59.608 50.000 0.00 0.00 0.00 5.52
86 87 0.511653 GTTGGTTCGTCTCTTTCGCC 59.488 55.000 0.00 0.00 0.00 5.54
87 88 1.214367 TGTTGGTTCGTCTCTTTCGC 58.786 50.000 0.00 0.00 0.00 4.70
88 89 3.545426 GGTTTGTTGGTTCGTCTCTTTCG 60.545 47.826 0.00 0.00 0.00 3.46
89 90 3.545426 CGGTTTGTTGGTTCGTCTCTTTC 60.545 47.826 0.00 0.00 0.00 2.62
90 91 2.353579 CGGTTTGTTGGTTCGTCTCTTT 59.646 45.455 0.00 0.00 0.00 2.52
91 92 1.937899 CGGTTTGTTGGTTCGTCTCTT 59.062 47.619 0.00 0.00 0.00 2.85
92 93 1.137479 TCGGTTTGTTGGTTCGTCTCT 59.863 47.619 0.00 0.00 0.00 3.10
93 94 1.574134 TCGGTTTGTTGGTTCGTCTC 58.426 50.000 0.00 0.00 0.00 3.36
94 95 2.140717 GATCGGTTTGTTGGTTCGTCT 58.859 47.619 0.00 0.00 0.00 4.18
95 96 1.196127 GGATCGGTTTGTTGGTTCGTC 59.804 52.381 0.00 0.00 0.00 4.20
96 97 1.232119 GGATCGGTTTGTTGGTTCGT 58.768 50.000 0.00 0.00 0.00 3.85
97 98 1.231221 TGGATCGGTTTGTTGGTTCG 58.769 50.000 0.00 0.00 0.00 3.95
98 99 2.817258 TGATGGATCGGTTTGTTGGTTC 59.183 45.455 0.00 0.00 0.00 3.62
99 100 2.556622 GTGATGGATCGGTTTGTTGGTT 59.443 45.455 0.00 0.00 0.00 3.67
100 101 2.159382 GTGATGGATCGGTTTGTTGGT 58.841 47.619 0.00 0.00 0.00 3.67
101 102 1.472480 GGTGATGGATCGGTTTGTTGG 59.528 52.381 0.00 0.00 0.00 3.77
102 103 2.158559 TGGTGATGGATCGGTTTGTTG 58.841 47.619 0.00 0.00 0.00 3.33
103 104 2.577606 TGGTGATGGATCGGTTTGTT 57.422 45.000 0.00 0.00 0.00 2.83
104 105 2.806945 ATGGTGATGGATCGGTTTGT 57.193 45.000 0.00 0.00 0.00 2.83
105 106 3.808728 AGTATGGTGATGGATCGGTTTG 58.191 45.455 0.00 0.00 0.00 2.93
106 107 3.454447 TGAGTATGGTGATGGATCGGTTT 59.546 43.478 0.00 0.00 0.00 3.27
107 108 3.038280 TGAGTATGGTGATGGATCGGTT 58.962 45.455 0.00 0.00 0.00 4.44
108 109 2.365617 GTGAGTATGGTGATGGATCGGT 59.634 50.000 0.00 0.00 0.00 4.69
109 110 2.365293 TGTGAGTATGGTGATGGATCGG 59.635 50.000 0.00 0.00 0.00 4.18
110 111 3.384668 GTGTGAGTATGGTGATGGATCG 58.615 50.000 0.00 0.00 0.00 3.69
111 112 3.495100 GGGTGTGAGTATGGTGATGGATC 60.495 52.174 0.00 0.00 0.00 3.36
112 113 2.439507 GGGTGTGAGTATGGTGATGGAT 59.560 50.000 0.00 0.00 0.00 3.41
113 114 1.837439 GGGTGTGAGTATGGTGATGGA 59.163 52.381 0.00 0.00 0.00 3.41
114 115 1.839994 AGGGTGTGAGTATGGTGATGG 59.160 52.381 0.00 0.00 0.00 3.51
115 116 2.501316 TGAGGGTGTGAGTATGGTGATG 59.499 50.000 0.00 0.00 0.00 3.07
116 117 2.501723 GTGAGGGTGTGAGTATGGTGAT 59.498 50.000 0.00 0.00 0.00 3.06
117 118 1.899814 GTGAGGGTGTGAGTATGGTGA 59.100 52.381 0.00 0.00 0.00 4.02
118 119 1.902508 AGTGAGGGTGTGAGTATGGTG 59.097 52.381 0.00 0.00 0.00 4.17
119 120 2.327325 AGTGAGGGTGTGAGTATGGT 57.673 50.000 0.00 0.00 0.00 3.55
120 121 3.703001 AAAGTGAGGGTGTGAGTATGG 57.297 47.619 0.00 0.00 0.00 2.74
170 173 0.951040 CTCCCGTTTGGACACTGCTC 60.951 60.000 0.00 0.00 38.61 4.26
202 205 3.239254 GGACCGGACGCTTTAAAATTTG 58.761 45.455 9.46 0.00 0.00 2.32
204 207 2.506444 TGGACCGGACGCTTTAAAATT 58.494 42.857 9.46 0.00 0.00 1.82
205 208 2.188062 TGGACCGGACGCTTTAAAAT 57.812 45.000 9.46 0.00 0.00 1.82
206 209 2.188062 ATGGACCGGACGCTTTAAAA 57.812 45.000 9.46 0.00 0.00 1.52
207 210 3.547054 ATATGGACCGGACGCTTTAAA 57.453 42.857 9.46 0.00 0.00 1.52
209 212 2.029649 GCTATATGGACCGGACGCTTTA 60.030 50.000 9.46 0.00 0.00 1.85
211 214 0.317479 GCTATATGGACCGGACGCTT 59.683 55.000 9.46 0.00 0.00 4.68
212 215 1.863662 CGCTATATGGACCGGACGCT 61.864 60.000 9.46 0.00 0.00 5.07
213 216 1.443872 CGCTATATGGACCGGACGC 60.444 63.158 9.46 0.00 0.00 5.19
289 578 6.516527 GCTGAAATAAAACCAGACAACCATGA 60.517 38.462 0.00 0.00 0.00 3.07
297 586 3.193479 CCCAGGCTGAAATAAAACCAGAC 59.807 47.826 17.94 0.00 36.22 3.51
312 601 4.541213 TCGAGAGAAACCCAGGCT 57.459 55.556 0.00 0.00 37.03 4.58
332 621 9.952188 AAAATTTGGAAAACGAAAACAAAGAAA 57.048 22.222 0.00 0.00 34.91 2.52
339 628 7.228150 TGAACGAAAATTTGGAAAACGAAAAC 58.772 30.769 0.00 0.00 0.00 2.43
425 716 8.432110 AAGTTTACGGATTTGCAAGAAAATTT 57.568 26.923 0.00 0.00 29.89 1.82
426 717 8.432110 AAAGTTTACGGATTTGCAAGAAAATT 57.568 26.923 0.00 0.00 29.89 1.82
451 742 5.770663 TGGGGTCATGAAAATACGAAAAGAA 59.229 36.000 0.00 0.00 0.00 2.52
453 744 5.637006 TGGGGTCATGAAAATACGAAAAG 57.363 39.130 0.00 0.00 0.00 2.27
457 748 4.642885 GGAAATGGGGTCATGAAAATACGA 59.357 41.667 0.00 0.00 33.18 3.43
463 754 5.839517 AATTTGGAAATGGGGTCATGAAA 57.160 34.783 0.00 0.00 33.18 2.69
473 764 9.843334 CAAAAATGATGGTAAATTTGGAAATGG 57.157 29.630 0.00 0.00 0.00 3.16
474 765 9.344309 GCAAAAATGATGGTAAATTTGGAAATG 57.656 29.630 0.00 0.00 0.00 2.32
475 766 8.235905 CGCAAAAATGATGGTAAATTTGGAAAT 58.764 29.630 0.00 0.00 0.00 2.17
476 767 7.227512 ACGCAAAAATGATGGTAAATTTGGAAA 59.772 29.630 0.00 0.00 0.00 3.13
479 770 6.479095 ACGCAAAAATGATGGTAAATTTGG 57.521 33.333 0.00 0.00 0.00 3.28
488 779 6.411630 AAATCATGAACGCAAAAATGATGG 57.588 33.333 0.00 0.00 39.20 3.51
515 806 8.970691 ATACACAAATAAGTTCATGAGTTTGC 57.029 30.769 14.19 0.00 31.62 3.68
682 1232 5.278022 GGTCGCACTTTTCAAGAGAGAAAAT 60.278 40.000 2.75 0.00 44.01 1.82
763 1314 8.706322 AGTTCATCAAACCTTATTAACTTGGT 57.294 30.769 0.00 0.00 38.76 3.67
830 1382 4.835615 TGGTATTTGTTGTTTGGCTACCAT 59.164 37.500 0.00 0.00 33.92 3.55
831 1383 4.215908 TGGTATTTGTTGTTTGGCTACCA 58.784 39.130 0.00 0.00 35.88 3.25
832 1384 4.857509 TGGTATTTGTTGTTTGGCTACC 57.142 40.909 0.00 0.00 0.00 3.18
833 1385 7.541122 TTTTTGGTATTTGTTGTTTGGCTAC 57.459 32.000 0.00 0.00 0.00 3.58
920 1480 5.417580 GTGAGCATAACCTATGTTTTTCCCA 59.582 40.000 0.00 0.00 38.43 4.37
931 1498 2.693591 CCTCTTCCGTGAGCATAACCTA 59.306 50.000 0.00 0.00 33.02 3.08
951 1518 0.813821 GCAAATGTTCCTCCAGAGCC 59.186 55.000 0.00 0.00 0.00 4.70
952 1519 1.471684 CAGCAAATGTTCCTCCAGAGC 59.528 52.381 0.00 0.00 0.00 4.09
968 3054 0.329261 ATAAAGCCCACAGAGCAGCA 59.671 50.000 0.00 0.00 0.00 4.41
969 3055 1.020437 GATAAAGCCCACAGAGCAGC 58.980 55.000 0.00 0.00 0.00 5.25
970 3056 2.286872 CTGATAAAGCCCACAGAGCAG 58.713 52.381 0.00 0.00 32.90 4.24
971 3057 2.408271 CTGATAAAGCCCACAGAGCA 57.592 50.000 0.00 0.00 32.90 4.26
984 3070 1.762370 TCCATTCCGCTGAGCTGATAA 59.238 47.619 1.78 0.00 0.00 1.75
985 3071 1.413118 TCCATTCCGCTGAGCTGATA 58.587 50.000 1.78 0.00 0.00 2.15
1347 3436 2.103340 GAGCGGAGGAAGTCGAGC 59.897 66.667 0.00 0.00 0.00 5.03
1404 3493 4.150454 AGGGAGGAGGGGAGCTCG 62.150 72.222 7.83 0.00 0.00 5.03
1431 3520 4.443266 AAGTCGAGGCGCTCCTGC 62.443 66.667 7.64 0.00 44.46 4.85
1710 3799 1.444553 CTTGAGTCCGAGCACGTCC 60.445 63.158 2.18 0.00 37.88 4.79
1959 4048 2.630580 TGCCTCCACATTTGGTTTTACC 59.369 45.455 0.00 0.00 44.35 2.85
1962 4051 4.592778 AGTAATGCCTCCACATTTGGTTTT 59.407 37.500 0.00 0.00 44.35 2.43
1974 4063 1.576356 CGAAGCTGAGTAATGCCTCC 58.424 55.000 0.00 0.00 0.00 4.30
2073 4162 3.366374 GGTTGAAGAAGTATTGCTGTGCC 60.366 47.826 0.00 0.00 0.00 5.01
2130 4219 1.373497 CGGCAGTTTCTCGACAGCT 60.373 57.895 0.00 0.00 33.18 4.24
2133 4222 1.664649 CTGCGGCAGTTTCTCGACA 60.665 57.895 21.60 0.00 0.00 4.35
2142 4231 4.731612 CTCACGAGCTGCGGCAGT 62.732 66.667 28.88 16.46 46.49 4.40
2217 4306 5.164620 ACATACGCCCAATATCATCATCA 57.835 39.130 0.00 0.00 0.00 3.07
2256 4345 2.681848 CTCATTCCGCAGCAGAAGAATT 59.318 45.455 0.00 0.00 0.00 2.17
2263 4352 0.814410 ATGAGCTCATTCCGCAGCAG 60.814 55.000 23.75 0.00 38.18 4.24
2274 4363 3.413846 AAGCTGTTCTTCATGAGCTCA 57.586 42.857 20.79 20.79 0.00 4.26
2451 4540 3.055819 TCCTTTCCTCAAACCTCTGATCG 60.056 47.826 0.00 0.00 0.00 3.69
2583 4672 3.487711 GCCTATATAGCACCTCATCGTCG 60.488 52.174 4.04 0.00 0.00 5.12
2743 4832 1.176527 CCCAAACGCATGTGGAAGAT 58.823 50.000 11.65 0.00 37.03 2.40
2800 4889 8.581057 AATAGATACTGCTCGACATGTAAAAG 57.419 34.615 0.00 0.00 0.00 2.27
2880 4970 7.861629 TGTTCTTCATCACTAACTTGGGATAT 58.138 34.615 0.00 0.00 0.00 1.63
2884 4974 6.430925 TGAATGTTCTTCATCACTAACTTGGG 59.569 38.462 0.00 0.00 35.48 4.12
2889 4979 8.345565 ACAAGTTGAATGTTCTTCATCACTAAC 58.654 33.333 10.54 0.00 35.48 2.34
2913 5003 6.102006 CGTTTATGCTCGGAAAATTAGACA 57.898 37.500 0.00 0.00 0.00 3.41
2936 5026 5.749596 AACTGCTTAAAATTTTTGTGGCC 57.250 34.783 9.06 0.00 0.00 5.36
2956 5046 6.980978 TGTAGATTAGCAGAGTAGCATGAAAC 59.019 38.462 0.00 0.00 36.85 2.78
2976 5066 0.545309 AGTGCCCCTCTGCTTGTAGA 60.545 55.000 0.00 0.00 0.00 2.59
2980 5070 1.228367 AACAGTGCCCCTCTGCTTG 60.228 57.895 0.00 0.00 36.50 4.01
2994 5084 7.173218 TCAGTTCTTACTTATTCCTTGCAACAG 59.827 37.037 0.00 0.00 30.26 3.16
2995 5085 6.995686 TCAGTTCTTACTTATTCCTTGCAACA 59.004 34.615 0.00 0.00 30.26 3.33
2996 5086 7.435068 TCAGTTCTTACTTATTCCTTGCAAC 57.565 36.000 0.00 0.00 30.26 4.17
2997 5087 7.174946 CCTTCAGTTCTTACTTATTCCTTGCAA 59.825 37.037 0.00 0.00 30.26 4.08
2998 5088 6.655003 CCTTCAGTTCTTACTTATTCCTTGCA 59.345 38.462 0.00 0.00 30.26 4.08
2999 5089 6.094186 CCCTTCAGTTCTTACTTATTCCTTGC 59.906 42.308 0.00 0.00 30.26 4.01
3000 5090 7.168905 ACCCTTCAGTTCTTACTTATTCCTTG 58.831 38.462 0.00 0.00 30.26 3.61
3001 5091 7.331089 ACCCTTCAGTTCTTACTTATTCCTT 57.669 36.000 0.00 0.00 30.26 3.36
3002 5092 6.954352 ACCCTTCAGTTCTTACTTATTCCT 57.046 37.500 0.00 0.00 30.26 3.36
3003 5093 8.319881 AGTAACCCTTCAGTTCTTACTTATTCC 58.680 37.037 0.00 0.00 30.26 3.01
3006 5096 9.544579 AGTAGTAACCCTTCAGTTCTTACTTAT 57.455 33.333 0.00 0.00 30.77 1.73
3007 5097 8.946797 AGTAGTAACCCTTCAGTTCTTACTTA 57.053 34.615 0.00 0.00 30.77 2.24
3008 5098 7.852550 AGTAGTAACCCTTCAGTTCTTACTT 57.147 36.000 0.00 0.00 30.77 2.24
3009 5099 7.852550 AAGTAGTAACCCTTCAGTTCTTACT 57.147 36.000 0.00 0.00 33.73 2.24
3012 5102 8.877195 TCAATAAGTAGTAACCCTTCAGTTCTT 58.123 33.333 0.00 0.00 0.00 2.52
3013 5103 8.431910 TCAATAAGTAGTAACCCTTCAGTTCT 57.568 34.615 0.00 0.00 0.00 3.01
3014 5104 8.933807 GTTCAATAAGTAGTAACCCTTCAGTTC 58.066 37.037 0.00 0.00 0.00 3.01
3015 5105 8.657712 AGTTCAATAAGTAGTAACCCTTCAGTT 58.342 33.333 0.00 0.00 0.00 3.16
3016 5106 8.095169 CAGTTCAATAAGTAGTAACCCTTCAGT 58.905 37.037 0.00 0.00 0.00 3.41
3017 5107 7.064728 GCAGTTCAATAAGTAGTAACCCTTCAG 59.935 40.741 0.00 0.00 0.00 3.02
3018 5108 6.877322 GCAGTTCAATAAGTAGTAACCCTTCA 59.123 38.462 0.00 0.00 0.00 3.02
3019 5109 6.877322 TGCAGTTCAATAAGTAGTAACCCTTC 59.123 38.462 0.00 0.00 0.00 3.46
3020 5110 6.775708 TGCAGTTCAATAAGTAGTAACCCTT 58.224 36.000 0.00 0.00 0.00 3.95
3021 5111 6.368779 TGCAGTTCAATAAGTAGTAACCCT 57.631 37.500 0.00 0.00 0.00 4.34
3022 5112 5.064834 GCTGCAGTTCAATAAGTAGTAACCC 59.935 44.000 16.64 0.00 0.00 4.11
3023 5113 5.064834 GGCTGCAGTTCAATAAGTAGTAACC 59.935 44.000 16.64 0.00 0.00 2.85
3024 5114 5.642063 TGGCTGCAGTTCAATAAGTAGTAAC 59.358 40.000 16.64 0.00 0.00 2.50
3025 5115 5.800296 TGGCTGCAGTTCAATAAGTAGTAA 58.200 37.500 16.64 0.00 0.00 2.24
3026 5116 5.186992 TCTGGCTGCAGTTCAATAAGTAGTA 59.813 40.000 16.64 0.00 0.00 1.82
3027 5117 4.020218 TCTGGCTGCAGTTCAATAAGTAGT 60.020 41.667 16.64 0.00 0.00 2.73
3028 5118 4.507710 TCTGGCTGCAGTTCAATAAGTAG 58.492 43.478 16.64 1.49 0.00 2.57
3029 5119 4.551702 TCTGGCTGCAGTTCAATAAGTA 57.448 40.909 16.64 0.00 0.00 2.24
3030 5120 3.423539 TCTGGCTGCAGTTCAATAAGT 57.576 42.857 16.64 0.00 0.00 2.24
3031 5121 4.771590 TTTCTGGCTGCAGTTCAATAAG 57.228 40.909 16.64 3.17 0.00 1.73
3032 5122 4.523943 ACATTTCTGGCTGCAGTTCAATAA 59.476 37.500 16.64 10.73 0.00 1.40
3033 5123 4.081406 ACATTTCTGGCTGCAGTTCAATA 58.919 39.130 16.64 3.15 0.00 1.90
3034 5124 2.895404 ACATTTCTGGCTGCAGTTCAAT 59.105 40.909 16.64 4.44 0.00 2.57
3035 5125 2.034939 CACATTTCTGGCTGCAGTTCAA 59.965 45.455 16.64 2.13 0.00 2.69
3036 5126 1.610038 CACATTTCTGGCTGCAGTTCA 59.390 47.619 16.64 13.06 0.00 3.18
3037 5127 1.610522 ACACATTTCTGGCTGCAGTTC 59.389 47.619 16.64 8.86 0.00 3.01
3038 5128 1.338973 CACACATTTCTGGCTGCAGTT 59.661 47.619 16.64 0.00 0.00 3.16
3039 5129 0.956633 CACACATTTCTGGCTGCAGT 59.043 50.000 16.64 0.00 0.00 4.40
3040 5130 0.242825 CCACACATTTCTGGCTGCAG 59.757 55.000 10.11 10.11 0.00 4.41
3041 5131 1.180456 CCCACACATTTCTGGCTGCA 61.180 55.000 0.50 0.00 0.00 4.41
3042 5132 1.181098 ACCCACACATTTCTGGCTGC 61.181 55.000 0.00 0.00 0.00 5.25
3043 5133 2.198827 TACCCACACATTTCTGGCTG 57.801 50.000 0.00 0.00 0.00 4.85
3044 5134 2.158534 TGTTACCCACACATTTCTGGCT 60.159 45.455 0.00 0.00 0.00 4.75
3045 5135 2.228822 CTGTTACCCACACATTTCTGGC 59.771 50.000 0.00 0.00 0.00 4.85
3046 5136 3.486383 ACTGTTACCCACACATTTCTGG 58.514 45.455 0.00 0.00 0.00 3.86
3047 5137 5.763204 ACTTACTGTTACCCACACATTTCTG 59.237 40.000 0.00 0.00 0.00 3.02
3048 5138 5.937111 ACTTACTGTTACCCACACATTTCT 58.063 37.500 0.00 0.00 0.00 2.52
3049 5139 6.128363 GCTACTTACTGTTACCCACACATTTC 60.128 42.308 0.00 0.00 0.00 2.17
3050 5140 5.704053 GCTACTTACTGTTACCCACACATTT 59.296 40.000 0.00 0.00 0.00 2.32
3051 5141 5.012768 AGCTACTTACTGTTACCCACACATT 59.987 40.000 0.00 0.00 0.00 2.71
3052 5142 4.530946 AGCTACTTACTGTTACCCACACAT 59.469 41.667 0.00 0.00 0.00 3.21
3053 5143 3.899360 AGCTACTTACTGTTACCCACACA 59.101 43.478 0.00 0.00 0.00 3.72
3054 5144 4.532314 AGCTACTTACTGTTACCCACAC 57.468 45.455 0.00 0.00 0.00 3.82
3055 5145 5.556006 AAAGCTACTTACTGTTACCCACA 57.444 39.130 0.00 0.00 0.00 4.17
3056 5146 5.334646 GCAAAAGCTACTTACTGTTACCCAC 60.335 44.000 0.00 0.00 0.00 4.61
3057 5147 4.758165 GCAAAAGCTACTTACTGTTACCCA 59.242 41.667 0.00 0.00 0.00 4.51
3058 5148 5.001874 AGCAAAAGCTACTTACTGTTACCC 58.998 41.667 0.00 0.00 0.00 3.69
3059 5149 7.845066 ATAGCAAAAGCTACTTACTGTTACC 57.155 36.000 0.00 0.00 0.00 2.85
3061 5151 9.042008 GCATATAGCAAAAGCTACTTACTGTTA 57.958 33.333 0.00 0.00 44.79 2.41
3062 5152 7.920738 GCATATAGCAAAAGCTACTTACTGTT 58.079 34.615 0.00 0.00 44.79 3.16
3063 5153 7.484035 GCATATAGCAAAAGCTACTTACTGT 57.516 36.000 0.00 0.00 44.79 3.55
3065 5155 7.202047 AGGAGCATATAGCAAAAGCTACTTACT 60.202 37.037 0.00 0.00 43.70 2.24
3080 5170 7.605691 CCCTGTAATTTCTCAAGGAGCATATAG 59.394 40.741 0.00 0.00 0.00 1.31
3087 5177 4.081642 TCGTCCCTGTAATTTCTCAAGGAG 60.082 45.833 0.00 0.00 0.00 3.69
3092 5182 4.141937 CCATCTCGTCCCTGTAATTTCTCA 60.142 45.833 0.00 0.00 0.00 3.27
3118 5208 3.626028 GTGTTGACACAGGACATTTCC 57.374 47.619 9.28 0.00 45.75 3.13
3133 5223 3.495377 CCAAAATGGCATCAAGTGTGTTG 59.505 43.478 0.00 0.00 0.00 3.33
3140 5230 4.430007 CATGTCTCCAAAATGGCATCAAG 58.570 43.478 0.00 0.00 37.47 3.02
3234 5324 8.014070 TGGAACGGAGTGATAAATCATAAGTA 57.986 34.615 0.00 0.00 45.00 2.24
3245 5335 8.467598 GCTCTTATATTATGGAACGGAGTGATA 58.532 37.037 0.00 0.00 45.00 2.15
3246 5336 7.324178 GCTCTTATATTATGGAACGGAGTGAT 58.676 38.462 0.00 0.00 45.00 3.06
3247 5337 6.569801 CGCTCTTATATTATGGAACGGAGTGA 60.570 42.308 0.00 0.00 45.00 3.41
3248 5338 5.573282 CGCTCTTATATTATGGAACGGAGTG 59.427 44.000 0.00 0.00 45.00 3.51
3250 5340 5.710984 ACGCTCTTATATTATGGAACGGAG 58.289 41.667 0.00 0.00 0.00 4.63
3251 5341 5.717078 ACGCTCTTATATTATGGAACGGA 57.283 39.130 0.00 0.00 0.00 4.69
3252 5342 6.780706 AAACGCTCTTATATTATGGAACGG 57.219 37.500 0.00 0.00 0.00 4.44
3253 5343 8.332464 TCAAAAACGCTCTTATATTATGGAACG 58.668 33.333 0.00 0.00 0.00 3.95
3254 5344 9.434559 GTCAAAAACGCTCTTATATTATGGAAC 57.565 33.333 0.00 0.00 0.00 3.62
3255 5345 9.168451 TGTCAAAAACGCTCTTATATTATGGAA 57.832 29.630 0.00 0.00 0.00 3.53
3256 5346 8.609176 GTGTCAAAAACGCTCTTATATTATGGA 58.391 33.333 0.00 0.00 35.42 3.41
3257 5347 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
3270 5360 6.362632 GACATTAATGAGTGTCAAAAACGC 57.637 37.500 22.16 0.00 43.20 4.84
3278 5368 6.142817 AGCGTTTTTGACATTAATGAGTGTC 58.857 36.000 22.16 10.87 43.81 3.67
3279 5369 6.017109 AGAGCGTTTTTGACATTAATGAGTGT 60.017 34.615 22.16 0.18 0.00 3.55
3280 5370 6.373779 AGAGCGTTTTTGACATTAATGAGTG 58.626 36.000 22.16 0.00 0.00 3.51
3281 5371 6.560253 AGAGCGTTTTTGACATTAATGAGT 57.440 33.333 22.16 0.00 0.00 3.41
3288 5378 9.950680 CCATAATATAAGAGCGTTTTTGACATT 57.049 29.630 0.00 0.00 0.00 2.71
3289 5379 8.567948 CCCATAATATAAGAGCGTTTTTGACAT 58.432 33.333 0.00 0.00 0.00 3.06
3290 5380 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3291 5381 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3292 5382 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3293 5383 7.042321 TCGTCCCATAATATAAGAGCGTTTTTG 60.042 37.037 0.00 0.00 0.00 2.44
3294 5384 6.987992 TCGTCCCATAATATAAGAGCGTTTTT 59.012 34.615 0.00 0.00 0.00 1.94
3295 5385 6.518493 TCGTCCCATAATATAAGAGCGTTTT 58.482 36.000 0.00 0.00 0.00 2.43
3296 5386 6.092955 TCGTCCCATAATATAAGAGCGTTT 57.907 37.500 0.00 0.00 0.00 3.60
3297 5387 5.717078 TCGTCCCATAATATAAGAGCGTT 57.283 39.130 0.00 0.00 0.00 4.84
3298 5388 5.467705 GTTCGTCCCATAATATAAGAGCGT 58.532 41.667 0.00 0.00 0.00 5.07
3299 5389 4.863131 GGTTCGTCCCATAATATAAGAGCG 59.137 45.833 0.00 0.00 0.00 5.03
3300 5390 4.863131 CGGTTCGTCCCATAATATAAGAGC 59.137 45.833 0.00 0.00 0.00 4.09
3301 5391 6.091437 GTCGGTTCGTCCCATAATATAAGAG 58.909 44.000 0.00 0.00 0.00 2.85
3302 5392 5.335113 CGTCGGTTCGTCCCATAATATAAGA 60.335 44.000 0.00 0.00 0.00 2.10
3303 5393 4.855388 CGTCGGTTCGTCCCATAATATAAG 59.145 45.833 0.00 0.00 0.00 1.73
3304 5394 4.518590 TCGTCGGTTCGTCCCATAATATAA 59.481 41.667 0.00 0.00 0.00 0.98
3305 5395 4.071423 TCGTCGGTTCGTCCCATAATATA 58.929 43.478 0.00 0.00 0.00 0.86
3306 5396 2.886523 TCGTCGGTTCGTCCCATAATAT 59.113 45.455 0.00 0.00 0.00 1.28
3307 5397 2.296792 TCGTCGGTTCGTCCCATAATA 58.703 47.619 0.00 0.00 0.00 0.98
3308 5398 1.105457 TCGTCGGTTCGTCCCATAAT 58.895 50.000 0.00 0.00 0.00 1.28
3309 5399 0.887247 TTCGTCGGTTCGTCCCATAA 59.113 50.000 0.00 0.00 0.00 1.90
3310 5400 0.452987 CTTCGTCGGTTCGTCCCATA 59.547 55.000 0.00 0.00 0.00 2.74
3311 5401 1.214589 CTTCGTCGGTTCGTCCCAT 59.785 57.895 0.00 0.00 0.00 4.00
3312 5402 2.646719 CTTCGTCGGTTCGTCCCA 59.353 61.111 0.00 0.00 0.00 4.37
3313 5403 2.126189 CCTTCGTCGGTTCGTCCC 60.126 66.667 0.00 0.00 0.00 4.46
3314 5404 2.126189 CCCTTCGTCGGTTCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
3315 5405 1.154073 CTCCCTTCGTCGGTTCGTC 60.154 63.158 0.00 0.00 0.00 4.20
3316 5406 0.606401 TACTCCCTTCGTCGGTTCGT 60.606 55.000 0.00 0.00 0.00 3.85
3317 5407 0.179179 GTACTCCCTTCGTCGGTTCG 60.179 60.000 0.00 0.00 0.00 3.95
3318 5408 1.172175 AGTACTCCCTTCGTCGGTTC 58.828 55.000 0.00 0.00 0.00 3.62
3319 5409 1.543358 GAAGTACTCCCTTCGTCGGTT 59.457 52.381 0.00 0.00 32.23 4.44
3320 5410 1.172175 GAAGTACTCCCTTCGTCGGT 58.828 55.000 0.00 0.00 32.23 4.69
3321 5411 1.401199 GAGAAGTACTCCCTTCGTCGG 59.599 57.143 0.00 0.00 44.46 4.79
3322 5412 2.082231 TGAGAAGTACTCCCTTCGTCG 58.918 52.381 0.00 0.00 44.46 5.12
3323 5413 3.506844 ACTTGAGAAGTACTCCCTTCGTC 59.493 47.826 0.00 0.00 44.46 4.20
3324 5414 3.498334 ACTTGAGAAGTACTCCCTTCGT 58.502 45.455 0.00 0.00 44.46 3.85
3325 5415 4.522722 AACTTGAGAAGTACTCCCTTCG 57.477 45.455 0.00 0.00 44.46 3.79
3326 5416 8.672823 TTTAAAACTTGAGAAGTACTCCCTTC 57.327 34.615 0.00 0.00 44.34 3.46
3327 5417 9.121658 CTTTTAAAACTTGAGAAGTACTCCCTT 57.878 33.333 0.00 0.00 44.34 3.95
3328 5418 8.272889 ACTTTTAAAACTTGAGAAGTACTCCCT 58.727 33.333 0.00 0.00 44.34 4.20
3329 5419 8.447924 ACTTTTAAAACTTGAGAAGTACTCCC 57.552 34.615 0.00 0.00 44.34 4.30
3374 5464 2.957402 AGCCTGGAGTGATTGAACAA 57.043 45.000 0.00 0.00 0.00 2.83
3380 5470 7.667219 CCAACAATATATAAGCCTGGAGTGATT 59.333 37.037 0.00 0.00 0.00 2.57
3416 5506 5.183140 ACACTTAACCAATTCCGATTCCAAG 59.817 40.000 0.00 0.00 0.00 3.61
3424 5514 3.365969 GCTTGGACACTTAACCAATTCCG 60.366 47.826 0.00 0.00 43.75 4.30
3446 5536 5.763698 AGCACTCATCAATAATGTGAGGATG 59.236 40.000 12.18 0.00 37.66 3.51
3500 5590 3.127533 CTTAGGCCAGCACCGCAC 61.128 66.667 5.01 0.00 33.69 5.34
3520 5610 1.298190 GATGTACCGCGACGACCTC 60.298 63.158 8.23 0.95 0.00 3.85
3521 5611 2.768492 GGATGTACCGCGACGACCT 61.768 63.158 8.23 0.00 0.00 3.85
3523 5613 1.298190 GAGGATGTACCGCGACGAC 60.298 63.158 8.23 2.39 44.74 4.34
3524 5614 1.450848 AGAGGATGTACCGCGACGA 60.451 57.895 8.23 0.00 43.25 4.20
3525 5615 1.298413 CAGAGGATGTACCGCGACG 60.298 63.158 8.23 0.00 43.25 5.12
3526 5616 0.669077 ATCAGAGGATGTACCGCGAC 59.331 55.000 8.23 0.00 43.25 5.19
3528 5618 1.202417 ACAATCAGAGGATGTACCGCG 60.202 52.381 0.00 0.00 43.25 6.46
3529 5619 2.604046 ACAATCAGAGGATGTACCGC 57.396 50.000 0.00 0.00 44.74 5.68
3552 5659 2.746362 GTCCTGCTTTCATCCTTCACAG 59.254 50.000 0.00 0.00 0.00 3.66
3553 5660 2.106338 TGTCCTGCTTTCATCCTTCACA 59.894 45.455 0.00 0.00 0.00 3.58
3555 5662 2.553028 GGTGTCCTGCTTTCATCCTTCA 60.553 50.000 0.00 0.00 0.00 3.02
3569 5676 6.315393 CGCTTAAAATTATGTACAGGTGTCCT 59.685 38.462 0.33 0.00 0.00 3.85
3598 5705 1.267732 CGCTTGAGCAATTCACCGATC 60.268 52.381 3.65 0.00 42.21 3.69
3602 5709 2.523015 CATTCGCTTGAGCAATTCACC 58.477 47.619 3.65 0.00 42.21 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.