Multiple sequence alignment - TraesCS6A01G343800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G343800 chr6A 100.000 4158 0 0 1 4158 578040555 578036398 0.000000e+00 7679.0
1 TraesCS6A01G343800 chr6A 86.016 2367 235 51 921 3221 577881627 577879291 0.000000e+00 2449.0
2 TraesCS6A01G343800 chr6B 92.641 3275 168 29 921 4158 650924947 650921709 0.000000e+00 4645.0
3 TraesCS6A01G343800 chr6B 85.131 1493 139 49 921 2360 650805549 650804087 0.000000e+00 1450.0
4 TraesCS6A01G343800 chr6B 89.189 1036 103 9 2399 3431 650804083 650803054 0.000000e+00 1284.0
5 TraesCS6A01G343800 chr6B 84.337 83 9 4 551 632 661047752 661047673 1.240000e-10 78.7
6 TraesCS6A01G343800 chr6D 93.689 2044 70 10 2140 4158 431268543 431266534 0.000000e+00 3005.0
7 TraesCS6A01G343800 chr6D 93.168 1288 70 11 859 2141 431270089 431268815 0.000000e+00 1875.0
8 TraesCS6A01G343800 chr6D 85.743 1487 135 37 921 2360 431210661 431209205 0.000000e+00 1500.0
9 TraesCS6A01G343800 chr6D 89.114 1038 98 12 2396 3431 431209204 431208180 0.000000e+00 1277.0
10 TraesCS6A01G343800 chr6D 84.143 391 46 7 3481 3869 431208180 431207804 8.490000e-97 364.0
11 TraesCS6A01G343800 chr6D 86.408 309 21 9 1 307 431272064 431271775 6.710000e-83 318.0
12 TraesCS6A01G343800 chr6D 88.017 242 14 4 630 868 431271775 431271546 5.300000e-69 272.0
13 TraesCS6A01G343800 chr6D 82.353 136 12 7 1194 1318 3040882 3040748 1.580000e-19 108.0
14 TraesCS6A01G343800 chr6D 93.878 49 2 1 4110 4158 431204840 431204793 5.770000e-09 73.1
15 TraesCS6A01G343800 chr2A 88.119 202 24 0 1132 1333 474320119 474319918 1.490000e-59 241.0
16 TraesCS6A01G343800 chr2A 81.197 117 18 3 381 494 756836957 756836842 1.590000e-14 91.6
17 TraesCS6A01G343800 chr2A 100.000 37 0 0 1451 1487 474319917 474319881 7.460000e-08 69.4
18 TraesCS6A01G343800 chr5A 79.235 183 32 5 367 544 653614903 653614722 5.640000e-24 122.0
19 TraesCS6A01G343800 chr7A 75.357 280 47 10 367 624 574114004 574113725 9.450000e-22 115.0
20 TraesCS6A01G343800 chr2B 74.818 274 49 13 371 631 584724159 584723893 5.690000e-19 106.0
21 TraesCS6A01G343800 chr2B 84.146 82 9 2 545 622 767471793 767471874 4.460000e-10 76.8
22 TraesCS6A01G343800 chr4A 86.486 74 9 1 552 624 595051962 595051889 3.450000e-11 80.5
23 TraesCS6A01G343800 chr4A 100.000 30 0 0 3433 3462 500632004 500632033 5.810000e-04 56.5
24 TraesCS6A01G343800 chrUn 100.000 42 0 0 1451 1492 40196085 40196126 1.240000e-10 78.7
25 TraesCS6A01G343800 chrUn 92.683 41 3 0 3433 3473 86340331 86340291 4.490000e-05 60.2
26 TraesCS6A01G343800 chr1B 83.117 77 12 1 549 624 456840748 456840672 7.460000e-08 69.4
27 TraesCS6A01G343800 chr3D 100.000 32 0 0 3434 3465 517313778 517313747 4.490000e-05 60.2
28 TraesCS6A01G343800 chr7B 100.000 29 0 0 3442 3470 27494727 27494699 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G343800 chr6A 578036398 578040555 4157 True 7679.000 7679 100.0000 1 4158 1 chr6A.!!$R2 4157
1 TraesCS6A01G343800 chr6A 577879291 577881627 2336 True 2449.000 2449 86.0160 921 3221 1 chr6A.!!$R1 2300
2 TraesCS6A01G343800 chr6B 650921709 650924947 3238 True 4645.000 4645 92.6410 921 4158 1 chr6B.!!$R1 3237
3 TraesCS6A01G343800 chr6B 650803054 650805549 2495 True 1367.000 1450 87.1600 921 3431 2 chr6B.!!$R3 2510
4 TraesCS6A01G343800 chr6D 431266534 431272064 5530 True 1367.500 3005 90.3205 1 4158 4 chr6D.!!$R3 4157
5 TraesCS6A01G343800 chr6D 431204793 431210661 5868 True 803.525 1500 88.2195 921 4158 4 chr6D.!!$R2 3237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.022106 GAAGCACGTTTCGTCGATCG 59.978 55.0 9.36 9.36 38.32 3.69 F
430 432 0.031994 GTCGTTTGGTTGCCTGCATT 59.968 50.0 0.00 0.00 0.00 3.56 F
438 440 0.037975 GTTGCCTGCATTTGGACCAG 60.038 55.0 0.00 0.00 0.00 4.00 F
550 552 0.040781 GCGCTTTAAGTTCCGTGCAA 60.041 50.0 0.00 0.00 33.41 4.08 F
804 807 0.105760 TGTTCCAAACAGCCCCATGT 60.106 50.0 0.00 0.00 36.25 3.21 F
1091 2568 0.532862 ACGCTAGCAGCAGTTGTTGT 60.533 50.0 16.45 0.00 42.58 3.32 F
2860 4708 0.251922 ACCTAGGTGGCACGAAGGTA 60.252 55.0 30.20 10.25 38.78 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 3178 0.037326 GGAGCTTCATGTCGTGGTCA 60.037 55.000 0.00 0.00 0.00 4.02 R
1904 3405 1.446792 AGCATCACGTTCCTCTGCG 60.447 57.895 0.00 0.00 37.88 5.18 R
2215 4016 1.744368 CTGTAGTGGCCAGCTGCTG 60.744 63.158 22.44 22.44 40.92 4.41 R
2460 4308 0.532640 AGCTGTCATGCACACACGAA 60.533 50.000 0.00 0.00 34.99 3.85 R
2599 4447 0.107066 TGTCCTGGTACGCCTCGATA 60.107 55.000 0.00 0.00 35.27 2.92 R
3079 4927 0.321653 AATCCCTCACCGTGAACTGC 60.322 55.000 2.19 0.00 0.00 4.40 R
3741 5605 2.851263 ATTGCAGGTCTTCGGTTACA 57.149 45.000 0.00 0.00 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.005347 ACTTTGAAGCACGTTTCGTCG 60.005 47.619 0.00 0.00 38.32 5.12
21 22 1.256895 CTTTGAAGCACGTTTCGTCGA 59.743 47.619 0.00 0.00 38.32 4.20
24 25 0.022106 GAAGCACGTTTCGTCGATCG 59.978 55.000 9.36 9.36 38.32 3.69
67 68 1.081774 CTCCAGATCGATCGCCGTC 60.082 63.158 19.33 8.46 39.75 4.79
111 112 3.071312 ACAATCCAACCATGCAATGTTGT 59.929 39.130 22.58 10.92 44.81 3.32
125 126 0.880441 TGTTGTGCATCGTTCATGGG 59.120 50.000 0.00 0.00 32.37 4.00
128 129 0.880441 TGTGCATCGTTCATGGGTTG 59.120 50.000 0.00 0.00 32.37 3.77
145 146 2.554344 GGTTGGCAGATCTGTTTGGGTA 60.554 50.000 23.38 0.84 0.00 3.69
150 151 3.440522 GGCAGATCTGTTTGGGTAGAAAC 59.559 47.826 23.38 2.37 36.53 2.78
153 154 5.551233 CAGATCTGTTTGGGTAGAAACTCA 58.449 41.667 14.95 0.00 36.86 3.41
156 157 5.367945 TCTGTTTGGGTAGAAACTCAACT 57.632 39.130 0.00 0.00 45.83 3.16
161 162 9.280174 CTGTTTGGGTAGAAACTCAACTAATTA 57.720 33.333 0.00 0.00 45.83 1.40
187 188 7.894376 ATTTGTGTTAATCTGGCATCTTTTG 57.106 32.000 0.00 0.00 0.00 2.44
188 189 6.403866 TTGTGTTAATCTGGCATCTTTTGT 57.596 33.333 0.00 0.00 0.00 2.83
190 191 6.446318 TGTGTTAATCTGGCATCTTTTGTTC 58.554 36.000 0.00 0.00 0.00 3.18
193 194 2.978156 TCTGGCATCTTTTGTTCCCT 57.022 45.000 0.00 0.00 0.00 4.20
194 195 4.591321 ATCTGGCATCTTTTGTTCCCTA 57.409 40.909 0.00 0.00 0.00 3.53
195 196 3.686016 TCTGGCATCTTTTGTTCCCTAC 58.314 45.455 0.00 0.00 0.00 3.18
196 197 3.330701 TCTGGCATCTTTTGTTCCCTACT 59.669 43.478 0.00 0.00 0.00 2.57
197 198 4.534500 TCTGGCATCTTTTGTTCCCTACTA 59.466 41.667 0.00 0.00 0.00 1.82
198 199 5.013704 TCTGGCATCTTTTGTTCCCTACTAA 59.986 40.000 0.00 0.00 0.00 2.24
199 200 5.253330 TGGCATCTTTTGTTCCCTACTAAG 58.747 41.667 0.00 0.00 0.00 2.18
200 201 5.222048 TGGCATCTTTTGTTCCCTACTAAGT 60.222 40.000 0.00 0.00 0.00 2.24
201 202 5.710567 GGCATCTTTTGTTCCCTACTAAGTT 59.289 40.000 0.00 0.00 0.00 2.66
202 203 6.349363 GGCATCTTTTGTTCCCTACTAAGTTG 60.349 42.308 0.00 0.00 0.00 3.16
203 204 6.206829 GCATCTTTTGTTCCCTACTAAGTTGT 59.793 38.462 0.00 0.00 30.31 3.32
204 205 7.584987 CATCTTTTGTTCCCTACTAAGTTGTG 58.415 38.462 0.00 0.00 0.00 3.33
205 206 6.891388 TCTTTTGTTCCCTACTAAGTTGTGA 58.109 36.000 0.00 0.00 0.00 3.58
209 210 6.336842 TGTTCCCTACTAAGTTGTGACTAC 57.663 41.667 0.00 0.00 34.21 2.73
219 220 5.881923 AAGTTGTGACTACTAAGTTCCCA 57.118 39.130 0.00 0.00 35.56 4.37
223 224 6.935208 AGTTGTGACTACTAAGTTCCCATTTC 59.065 38.462 0.00 0.00 35.56 2.17
224 225 6.428083 TGTGACTACTAAGTTCCCATTTCA 57.572 37.500 0.00 0.00 35.56 2.69
239 240 6.478129 TCCCATTTCAAACGTAGGAAGTAAT 58.522 36.000 0.00 0.00 0.00 1.89
304 306 5.299531 GGAATCTAAAACAGGGCAATACTCC 59.700 44.000 0.00 0.00 0.00 3.85
306 308 5.249780 TCTAAAACAGGGCAATACTCCAA 57.750 39.130 0.00 0.00 0.00 3.53
307 309 5.253330 TCTAAAACAGGGCAATACTCCAAG 58.747 41.667 0.00 0.00 0.00 3.61
308 310 3.806949 AAACAGGGCAATACTCCAAGA 57.193 42.857 0.00 0.00 0.00 3.02
309 311 3.806949 AACAGGGCAATACTCCAAGAA 57.193 42.857 0.00 0.00 0.00 2.52
310 312 3.073274 ACAGGGCAATACTCCAAGAAC 57.927 47.619 0.00 0.00 0.00 3.01
311 313 2.009774 CAGGGCAATACTCCAAGAACG 58.990 52.381 0.00 0.00 0.00 3.95
312 314 1.628846 AGGGCAATACTCCAAGAACGT 59.371 47.619 0.00 0.00 0.00 3.99
313 315 1.737793 GGGCAATACTCCAAGAACGTG 59.262 52.381 0.00 0.00 0.00 4.49
314 316 2.423577 GGCAATACTCCAAGAACGTGT 58.576 47.619 0.00 0.00 0.00 4.49
315 317 2.812011 GGCAATACTCCAAGAACGTGTT 59.188 45.455 0.00 0.00 0.00 3.32
316 318 3.252458 GGCAATACTCCAAGAACGTGTTT 59.748 43.478 0.00 0.00 0.00 2.83
317 319 4.219033 GCAATACTCCAAGAACGTGTTTG 58.781 43.478 0.00 0.00 0.00 2.93
318 320 4.783242 CAATACTCCAAGAACGTGTTTGG 58.217 43.478 19.97 19.97 44.15 3.28
319 321 2.413310 ACTCCAAGAACGTGTTTGGT 57.587 45.000 23.16 9.03 43.43 3.67
320 322 2.718563 ACTCCAAGAACGTGTTTGGTT 58.281 42.857 23.16 13.39 43.43 3.67
321 323 3.876341 ACTCCAAGAACGTGTTTGGTTA 58.124 40.909 23.16 10.31 43.43 2.85
322 324 3.624410 ACTCCAAGAACGTGTTTGGTTAC 59.376 43.478 23.16 0.00 43.43 2.50
323 325 3.607741 TCCAAGAACGTGTTTGGTTACA 58.392 40.909 23.16 8.19 43.43 2.41
324 326 4.200874 TCCAAGAACGTGTTTGGTTACAT 58.799 39.130 23.16 0.00 43.43 2.29
325 327 4.641094 TCCAAGAACGTGTTTGGTTACATT 59.359 37.500 23.16 0.00 43.43 2.71
326 328 4.973663 CCAAGAACGTGTTTGGTTACATTC 59.026 41.667 18.48 0.00 39.18 2.67
327 329 4.461992 AGAACGTGTTTGGTTACATTCG 57.538 40.909 0.00 0.00 0.00 3.34
328 330 2.673976 ACGTGTTTGGTTACATTCGC 57.326 45.000 0.00 0.00 0.00 4.70
329 331 1.941294 ACGTGTTTGGTTACATTCGCA 59.059 42.857 0.00 0.00 0.00 5.10
330 332 2.355132 ACGTGTTTGGTTACATTCGCAA 59.645 40.909 0.00 0.00 0.00 4.85
331 333 3.003897 ACGTGTTTGGTTACATTCGCAAT 59.996 39.130 0.00 0.00 0.00 3.56
332 334 3.360463 CGTGTTTGGTTACATTCGCAATG 59.640 43.478 7.16 7.16 44.48 2.82
333 335 3.672867 GTGTTTGGTTACATTCGCAATGG 59.327 43.478 11.76 0.00 43.21 3.16
334 336 3.570125 TGTTTGGTTACATTCGCAATGGA 59.430 39.130 11.76 2.69 43.21 3.41
335 337 4.165779 GTTTGGTTACATTCGCAATGGAG 58.834 43.478 11.76 0.00 43.21 3.86
336 338 1.742831 TGGTTACATTCGCAATGGAGC 59.257 47.619 11.76 6.61 43.21 4.70
337 339 1.065551 GGTTACATTCGCAATGGAGCC 59.934 52.381 9.88 9.88 44.42 4.70
338 340 2.017049 GTTACATTCGCAATGGAGCCT 58.983 47.619 11.76 0.00 43.21 4.58
339 341 1.667236 TACATTCGCAATGGAGCCTG 58.333 50.000 11.76 0.00 43.21 4.85
340 342 1.065273 CATTCGCAATGGAGCCTGC 59.935 57.895 2.12 0.00 35.23 4.85
341 343 2.123428 ATTCGCAATGGAGCCTGCC 61.123 57.895 0.00 0.00 35.01 4.85
342 344 4.802051 TCGCAATGGAGCCTGCCC 62.802 66.667 0.00 0.00 35.01 5.36
344 346 4.764771 GCAATGGAGCCTGCCCCA 62.765 66.667 0.00 0.00 36.79 4.96
345 347 2.441532 CAATGGAGCCTGCCCCAG 60.442 66.667 0.00 0.00 35.67 4.45
346 348 2.943265 AATGGAGCCTGCCCCAGT 60.943 61.111 0.00 0.00 35.67 4.00
347 349 3.292481 AATGGAGCCTGCCCCAGTG 62.292 63.158 0.00 0.00 35.67 3.66
350 352 4.106925 GAGCCTGCCCCAGTGGAG 62.107 72.222 11.95 0.00 35.39 3.86
354 356 4.421515 CTGCCCCAGTGGAGCCTG 62.422 72.222 13.82 2.21 35.39 4.85
356 358 3.971702 GCCCCAGTGGAGCCTGTT 61.972 66.667 11.95 0.00 35.39 3.16
357 359 2.846532 CCCCAGTGGAGCCTGTTT 59.153 61.111 11.95 0.00 35.39 2.83
358 360 2.074967 CCCCAGTGGAGCCTGTTTA 58.925 57.895 11.95 0.00 35.39 2.01
359 361 0.404040 CCCCAGTGGAGCCTGTTTAA 59.596 55.000 11.95 0.00 35.39 1.52
360 362 1.614317 CCCCAGTGGAGCCTGTTTAAG 60.614 57.143 11.95 0.00 35.39 1.85
361 363 1.351017 CCCAGTGGAGCCTGTTTAAGA 59.649 52.381 11.95 0.00 0.00 2.10
362 364 2.025887 CCCAGTGGAGCCTGTTTAAGAT 60.026 50.000 11.95 0.00 0.00 2.40
363 365 3.562176 CCCAGTGGAGCCTGTTTAAGATT 60.562 47.826 11.95 0.00 0.00 2.40
364 366 3.691609 CCAGTGGAGCCTGTTTAAGATTC 59.308 47.826 1.68 0.00 0.00 2.52
365 367 3.372206 CAGTGGAGCCTGTTTAAGATTCG 59.628 47.826 0.00 0.00 0.00 3.34
366 368 2.096013 GTGGAGCCTGTTTAAGATTCGC 59.904 50.000 0.00 0.00 0.00 4.70
367 369 2.290008 TGGAGCCTGTTTAAGATTCGCA 60.290 45.455 0.00 0.00 0.00 5.10
368 370 2.747446 GGAGCCTGTTTAAGATTCGCAA 59.253 45.455 0.00 0.00 0.00 4.85
369 371 3.378427 GGAGCCTGTTTAAGATTCGCAAT 59.622 43.478 0.00 0.00 0.00 3.56
370 372 4.346129 GAGCCTGTTTAAGATTCGCAATG 58.654 43.478 0.00 0.00 0.00 2.82
371 373 3.129287 AGCCTGTTTAAGATTCGCAATGG 59.871 43.478 0.00 0.00 0.00 3.16
372 374 3.128589 GCCTGTTTAAGATTCGCAATGGA 59.871 43.478 0.00 0.00 0.00 3.41
373 375 4.731773 GCCTGTTTAAGATTCGCAATGGAG 60.732 45.833 0.00 0.00 0.00 3.86
374 376 4.346129 CTGTTTAAGATTCGCAATGGAGC 58.654 43.478 0.00 0.00 0.00 4.70
375 377 3.128589 TGTTTAAGATTCGCAATGGAGCC 59.871 43.478 0.00 0.00 0.00 4.70
376 378 3.281727 TTAAGATTCGCAATGGAGCCT 57.718 42.857 0.00 0.00 0.00 4.58
377 379 1.386533 AAGATTCGCAATGGAGCCTG 58.613 50.000 0.00 0.00 0.00 4.85
378 380 0.254178 AGATTCGCAATGGAGCCTGT 59.746 50.000 0.00 0.00 0.00 4.00
379 381 1.098050 GATTCGCAATGGAGCCTGTT 58.902 50.000 0.00 0.00 0.00 3.16
380 382 1.474077 GATTCGCAATGGAGCCTGTTT 59.526 47.619 0.00 0.00 0.00 2.83
381 383 2.192664 TTCGCAATGGAGCCTGTTTA 57.807 45.000 0.00 0.00 0.00 2.01
382 384 2.192664 TCGCAATGGAGCCTGTTTAA 57.807 45.000 0.00 0.00 0.00 1.52
383 385 2.083774 TCGCAATGGAGCCTGTTTAAG 58.916 47.619 0.00 0.00 0.00 1.85
399 401 7.897864 CCTGTTTAAGGGTATATAGACTCTGG 58.102 42.308 0.00 0.00 43.15 3.86
400 402 7.728981 CCTGTTTAAGGGTATATAGACTCTGGA 59.271 40.741 0.00 0.00 43.15 3.86
401 403 9.315363 CTGTTTAAGGGTATATAGACTCTGGAT 57.685 37.037 0.00 0.00 27.76 3.41
407 409 9.707957 AAGGGTATATAGACTCTGGATATTCTG 57.292 37.037 0.00 0.00 27.76 3.02
408 410 7.782644 AGGGTATATAGACTCTGGATATTCTGC 59.217 40.741 0.00 0.00 0.00 4.26
409 411 7.561722 GGGTATATAGACTCTGGATATTCTGCA 59.438 40.741 0.00 0.00 0.00 4.41
410 412 9.142014 GGTATATAGACTCTGGATATTCTGCAT 57.858 37.037 0.00 0.00 0.00 3.96
411 413 9.964303 GTATATAGACTCTGGATATTCTGCATG 57.036 37.037 0.00 0.00 0.00 4.06
412 414 6.931790 ATAGACTCTGGATATTCTGCATGT 57.068 37.500 0.00 0.00 0.00 3.21
413 415 5.212532 AGACTCTGGATATTCTGCATGTC 57.787 43.478 0.00 0.00 32.60 3.06
414 416 3.986572 GACTCTGGATATTCTGCATGTCG 59.013 47.826 0.00 0.00 0.00 4.35
415 417 3.386078 ACTCTGGATATTCTGCATGTCGT 59.614 43.478 0.00 0.00 0.00 4.34
416 418 4.141846 ACTCTGGATATTCTGCATGTCGTT 60.142 41.667 0.00 0.00 0.00 3.85
417 419 4.769688 TCTGGATATTCTGCATGTCGTTT 58.230 39.130 0.00 0.00 0.00 3.60
418 420 4.571984 TCTGGATATTCTGCATGTCGTTTG 59.428 41.667 0.00 0.00 0.00 2.93
419 421 3.627123 TGGATATTCTGCATGTCGTTTGG 59.373 43.478 0.00 0.00 0.00 3.28
420 422 3.627577 GGATATTCTGCATGTCGTTTGGT 59.372 43.478 0.00 0.00 0.00 3.67
421 423 4.096382 GGATATTCTGCATGTCGTTTGGTT 59.904 41.667 0.00 0.00 0.00 3.67
422 424 2.772568 TTCTGCATGTCGTTTGGTTG 57.227 45.000 0.00 0.00 0.00 3.77
423 425 0.310543 TCTGCATGTCGTTTGGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
424 426 0.664166 CTGCATGTCGTTTGGTTGCC 60.664 55.000 0.00 0.00 32.39 4.52
425 427 1.106351 TGCATGTCGTTTGGTTGCCT 61.106 50.000 0.00 0.00 32.39 4.75
426 428 0.664166 GCATGTCGTTTGGTTGCCTG 60.664 55.000 0.00 0.00 0.00 4.85
427 429 0.664166 CATGTCGTTTGGTTGCCTGC 60.664 55.000 0.00 0.00 0.00 4.85
428 430 1.106351 ATGTCGTTTGGTTGCCTGCA 61.106 50.000 0.00 0.00 0.00 4.41
429 431 1.106351 TGTCGTTTGGTTGCCTGCAT 61.106 50.000 0.00 0.00 0.00 3.96
430 432 0.031994 GTCGTTTGGTTGCCTGCATT 59.968 50.000 0.00 0.00 0.00 3.56
431 433 0.749649 TCGTTTGGTTGCCTGCATTT 59.250 45.000 0.00 0.00 0.00 2.32
432 434 0.860533 CGTTTGGTTGCCTGCATTTG 59.139 50.000 0.00 0.00 0.00 2.32
433 435 1.228533 GTTTGGTTGCCTGCATTTGG 58.771 50.000 0.00 0.00 0.00 3.28
434 436 1.126488 TTTGGTTGCCTGCATTTGGA 58.874 45.000 0.00 0.00 0.00 3.53
435 437 0.392336 TTGGTTGCCTGCATTTGGAC 59.608 50.000 0.00 0.00 0.00 4.02
436 438 1.293179 GGTTGCCTGCATTTGGACC 59.707 57.895 0.00 0.00 0.00 4.46
437 439 1.470996 GGTTGCCTGCATTTGGACCA 61.471 55.000 5.31 0.00 0.00 4.02
438 440 0.037975 GTTGCCTGCATTTGGACCAG 60.038 55.000 0.00 0.00 0.00 4.00
439 441 1.818959 TTGCCTGCATTTGGACCAGC 61.819 55.000 0.00 0.00 0.00 4.85
440 442 1.980772 GCCTGCATTTGGACCAGCT 60.981 57.895 5.85 0.00 0.00 4.24
441 443 1.538687 GCCTGCATTTGGACCAGCTT 61.539 55.000 5.85 0.00 0.00 3.74
442 444 0.971386 CCTGCATTTGGACCAGCTTT 59.029 50.000 5.85 0.00 0.00 3.51
443 445 1.067354 CCTGCATTTGGACCAGCTTTC 60.067 52.381 5.85 0.00 0.00 2.62
444 446 1.614903 CTGCATTTGGACCAGCTTTCA 59.385 47.619 5.85 0.00 0.00 2.69
445 447 2.232941 CTGCATTTGGACCAGCTTTCAT 59.767 45.455 5.85 0.00 0.00 2.57
446 448 2.231964 TGCATTTGGACCAGCTTTCATC 59.768 45.455 5.85 0.00 0.00 2.92
447 449 2.417787 GCATTTGGACCAGCTTTCATCC 60.418 50.000 0.00 0.00 0.00 3.51
448 450 2.978156 TTTGGACCAGCTTTCATCCT 57.022 45.000 0.00 0.00 32.06 3.24
449 451 2.496899 TTGGACCAGCTTTCATCCTC 57.503 50.000 0.00 0.00 32.06 3.71
450 452 1.661463 TGGACCAGCTTTCATCCTCT 58.339 50.000 0.00 0.00 32.06 3.69
451 453 1.988107 TGGACCAGCTTTCATCCTCTT 59.012 47.619 0.00 0.00 32.06 2.85
452 454 2.376518 TGGACCAGCTTTCATCCTCTTT 59.623 45.455 0.00 0.00 32.06 2.52
453 455 2.751806 GGACCAGCTTTCATCCTCTTTG 59.248 50.000 0.00 0.00 0.00 2.77
454 456 3.416156 GACCAGCTTTCATCCTCTTTGT 58.584 45.455 0.00 0.00 0.00 2.83
455 457 4.565652 GGACCAGCTTTCATCCTCTTTGTA 60.566 45.833 0.00 0.00 0.00 2.41
456 458 4.583871 ACCAGCTTTCATCCTCTTTGTAG 58.416 43.478 0.00 0.00 0.00 2.74
457 459 4.042187 ACCAGCTTTCATCCTCTTTGTAGT 59.958 41.667 0.00 0.00 0.00 2.73
458 460 4.394300 CCAGCTTTCATCCTCTTTGTAGTG 59.606 45.833 0.00 0.00 0.00 2.74
459 461 4.999950 CAGCTTTCATCCTCTTTGTAGTGT 59.000 41.667 0.00 0.00 0.00 3.55
460 462 6.166279 CAGCTTTCATCCTCTTTGTAGTGTA 58.834 40.000 0.00 0.00 0.00 2.90
461 463 6.650807 CAGCTTTCATCCTCTTTGTAGTGTAA 59.349 38.462 0.00 0.00 0.00 2.41
462 464 7.173218 CAGCTTTCATCCTCTTTGTAGTGTAAA 59.827 37.037 0.00 0.00 0.00 2.01
463 465 7.885399 AGCTTTCATCCTCTTTGTAGTGTAAAT 59.115 33.333 0.00 0.00 0.00 1.40
464 466 8.515414 GCTTTCATCCTCTTTGTAGTGTAAATT 58.485 33.333 0.00 0.00 0.00 1.82
465 467 9.831737 CTTTCATCCTCTTTGTAGTGTAAATTG 57.168 33.333 0.00 0.00 0.00 2.32
466 468 7.377766 TCATCCTCTTTGTAGTGTAAATTGC 57.622 36.000 0.00 0.00 0.00 3.56
467 469 6.939730 TCATCCTCTTTGTAGTGTAAATTGCA 59.060 34.615 0.00 0.00 0.00 4.08
468 470 6.554334 TCCTCTTTGTAGTGTAAATTGCAC 57.446 37.500 6.08 6.08 37.13 4.57
470 472 7.446769 TCCTCTTTGTAGTGTAAATTGCACTA 58.553 34.615 17.74 17.74 44.41 2.74
471 473 7.602644 TCCTCTTTGTAGTGTAAATTGCACTAG 59.397 37.037 21.18 13.10 46.25 2.57
472 474 7.148407 CCTCTTTGTAGTGTAAATTGCACTAGG 60.148 40.741 21.18 16.20 46.25 3.02
473 475 5.873179 TTGTAGTGTAAATTGCACTAGGC 57.127 39.130 21.18 12.72 46.25 3.93
474 476 4.258543 TGTAGTGTAAATTGCACTAGGCC 58.741 43.478 21.18 12.13 46.25 5.19
475 477 2.356135 AGTGTAAATTGCACTAGGCCG 58.644 47.619 14.86 0.00 44.41 6.13
476 478 2.027561 AGTGTAAATTGCACTAGGCCGA 60.028 45.455 14.86 0.00 44.41 5.54
477 479 2.351726 GTGTAAATTGCACTAGGCCGAG 59.648 50.000 11.86 11.86 43.89 4.63
478 480 2.027561 TGTAAATTGCACTAGGCCGAGT 60.028 45.455 13.44 13.44 43.89 4.18
479 481 1.739067 AAATTGCACTAGGCCGAGTC 58.261 50.000 16.52 11.38 43.89 3.36
480 482 0.905357 AATTGCACTAGGCCGAGTCT 59.095 50.000 16.52 0.00 43.89 3.24
481 483 0.176680 ATTGCACTAGGCCGAGTCTG 59.823 55.000 16.52 7.33 43.89 3.51
482 484 2.202810 GCACTAGGCCGAGTCTGC 60.203 66.667 16.52 13.80 36.11 4.26
483 485 3.006756 GCACTAGGCCGAGTCTGCA 62.007 63.158 16.52 0.00 36.11 4.41
484 486 1.819229 CACTAGGCCGAGTCTGCAT 59.181 57.895 16.52 3.78 0.00 3.96
485 487 1.032794 CACTAGGCCGAGTCTGCATA 58.967 55.000 16.52 4.84 0.00 3.14
486 488 1.615883 CACTAGGCCGAGTCTGCATAT 59.384 52.381 16.52 0.00 0.00 1.78
487 489 1.615883 ACTAGGCCGAGTCTGCATATG 59.384 52.381 13.44 0.00 0.00 1.78
488 490 0.318441 TAGGCCGAGTCTGCATATGC 59.682 55.000 21.09 21.09 42.50 3.14
503 505 5.789710 GCATATGCAAAAACAGCTGATTT 57.210 34.783 23.35 18.98 41.59 2.17
504 506 5.556470 GCATATGCAAAAACAGCTGATTTG 58.444 37.500 29.06 29.06 41.59 2.32
505 507 5.349270 GCATATGCAAAAACAGCTGATTTGA 59.651 36.000 33.49 24.30 41.59 2.69
506 508 6.128499 GCATATGCAAAAACAGCTGATTTGAA 60.128 34.615 33.49 28.73 41.59 2.69
507 509 7.413657 GCATATGCAAAAACAGCTGATTTGAAT 60.414 33.333 33.49 31.31 41.59 2.57
508 510 5.660629 TGCAAAAACAGCTGATTTGAATG 57.339 34.783 33.49 24.22 36.41 2.67
509 511 5.117584 TGCAAAAACAGCTGATTTGAATGT 58.882 33.333 33.49 15.68 36.41 2.71
510 512 5.585445 TGCAAAAACAGCTGATTTGAATGTT 59.415 32.000 33.49 15.13 36.41 2.71
511 513 6.131389 GCAAAAACAGCTGATTTGAATGTTC 58.869 36.000 33.49 20.37 36.41 3.18
512 514 6.018507 GCAAAAACAGCTGATTTGAATGTTCT 60.019 34.615 33.49 14.01 36.41 3.01
513 515 7.466320 GCAAAAACAGCTGATTTGAATGTTCTT 60.466 33.333 33.49 13.46 36.41 2.52
514 516 7.473027 AAAACAGCTGATTTGAATGTTCTTG 57.527 32.000 23.35 0.00 33.17 3.02
515 517 5.130292 ACAGCTGATTTGAATGTTCTTGG 57.870 39.130 23.35 0.00 0.00 3.61
516 518 3.924686 CAGCTGATTTGAATGTTCTTGGC 59.075 43.478 8.42 0.00 0.00 4.52
517 519 2.919229 GCTGATTTGAATGTTCTTGGCG 59.081 45.455 0.00 0.00 0.00 5.69
518 520 3.504863 CTGATTTGAATGTTCTTGGCGG 58.495 45.455 0.00 0.00 0.00 6.13
519 521 2.230992 TGATTTGAATGTTCTTGGCGGG 59.769 45.455 0.00 0.00 0.00 6.13
520 522 0.316841 TTTGAATGTTCTTGGCGGGC 59.683 50.000 0.00 0.00 0.00 6.13
521 523 1.531739 TTGAATGTTCTTGGCGGGCC 61.532 55.000 1.86 1.86 0.00 5.80
522 524 1.678970 GAATGTTCTTGGCGGGCCT 60.679 57.895 11.55 0.00 36.94 5.19
523 525 0.393808 GAATGTTCTTGGCGGGCCTA 60.394 55.000 11.55 2.10 36.94 3.93
524 526 0.394352 AATGTTCTTGGCGGGCCTAG 60.394 55.000 13.91 13.91 39.69 3.02
525 527 2.824489 GTTCTTGGCGGGCCTAGC 60.824 66.667 15.04 14.06 38.52 3.42
543 545 2.248828 GCCAAGAGCGCTTTAAGTTC 57.751 50.000 13.26 0.00 30.14 3.01
544 546 1.135660 GCCAAGAGCGCTTTAAGTTCC 60.136 52.381 13.26 0.00 30.14 3.62
545 547 1.128692 CCAAGAGCGCTTTAAGTTCCG 59.871 52.381 13.26 0.00 30.14 4.30
546 548 1.798813 CAAGAGCGCTTTAAGTTCCGT 59.201 47.619 13.26 0.00 30.14 4.69
547 549 1.429463 AGAGCGCTTTAAGTTCCGTG 58.571 50.000 13.26 0.00 0.00 4.94
548 550 0.179222 GAGCGCTTTAAGTTCCGTGC 60.179 55.000 13.26 0.00 0.00 5.34
549 551 0.882927 AGCGCTTTAAGTTCCGTGCA 60.883 50.000 2.64 0.00 35.49 4.57
550 552 0.040781 GCGCTTTAAGTTCCGTGCAA 60.041 50.000 0.00 0.00 33.41 4.08
551 553 1.950472 CGCTTTAAGTTCCGTGCAAG 58.050 50.000 0.00 0.00 0.00 4.01
552 554 1.686464 GCTTTAAGTTCCGTGCAAGC 58.314 50.000 0.00 0.00 0.00 4.01
553 555 1.666023 GCTTTAAGTTCCGTGCAAGCC 60.666 52.381 0.00 0.00 32.20 4.35
554 556 1.606668 CTTTAAGTTCCGTGCAAGCCA 59.393 47.619 0.00 0.00 0.00 4.75
555 557 1.234821 TTAAGTTCCGTGCAAGCCAG 58.765 50.000 0.00 0.00 0.00 4.85
556 558 0.605319 TAAGTTCCGTGCAAGCCAGG 60.605 55.000 0.00 0.00 0.00 4.45
557 559 4.043200 GTTCCGTGCAAGCCAGGC 62.043 66.667 1.84 1.84 0.00 4.85
558 560 4.577677 TTCCGTGCAAGCCAGGCA 62.578 61.111 15.80 0.00 39.32 4.75
559 561 4.577677 TCCGTGCAAGCCAGGCAA 62.578 61.111 15.80 0.00 43.91 4.52
560 562 4.047059 CCGTGCAAGCCAGGCAAG 62.047 66.667 15.80 6.48 43.91 4.01
561 563 4.712425 CGTGCAAGCCAGGCAAGC 62.712 66.667 15.80 17.45 43.91 4.01
562 564 3.608662 GTGCAAGCCAGGCAAGCA 61.609 61.111 22.83 22.83 43.91 3.91
563 565 2.838693 TGCAAGCCAGGCAAGCAA 60.839 55.556 24.02 10.96 37.57 3.91
564 566 2.422591 GCAAGCCAGGCAAGCAAA 59.577 55.556 15.80 0.00 32.47 3.68
565 567 1.957695 GCAAGCCAGGCAAGCAAAC 60.958 57.895 15.80 0.00 32.47 2.93
566 568 1.442567 CAAGCCAGGCAAGCAAACA 59.557 52.632 15.80 0.00 0.00 2.83
567 569 0.179078 CAAGCCAGGCAAGCAAACAA 60.179 50.000 15.80 0.00 0.00 2.83
568 570 0.179076 AAGCCAGGCAAGCAAACAAC 60.179 50.000 15.80 0.00 0.00 3.32
569 571 1.044790 AGCCAGGCAAGCAAACAACT 61.045 50.000 15.80 0.00 0.00 3.16
570 572 0.598419 GCCAGGCAAGCAAACAACTC 60.598 55.000 6.55 0.00 0.00 3.01
571 573 0.746063 CCAGGCAAGCAAACAACTCA 59.254 50.000 0.00 0.00 0.00 3.41
572 574 1.269413 CCAGGCAAGCAAACAACTCAG 60.269 52.381 0.00 0.00 0.00 3.35
573 575 1.406539 CAGGCAAGCAAACAACTCAGT 59.593 47.619 0.00 0.00 0.00 3.41
574 576 2.618241 CAGGCAAGCAAACAACTCAGTA 59.382 45.455 0.00 0.00 0.00 2.74
575 577 2.618709 AGGCAAGCAAACAACTCAGTAC 59.381 45.455 0.00 0.00 0.00 2.73
576 578 2.618709 GGCAAGCAAACAACTCAGTACT 59.381 45.455 0.00 0.00 0.00 2.73
577 579 3.066760 GGCAAGCAAACAACTCAGTACTT 59.933 43.478 0.00 0.00 0.00 2.24
578 580 4.274950 GGCAAGCAAACAACTCAGTACTTA 59.725 41.667 0.00 0.00 0.00 2.24
579 581 5.444122 GCAAGCAAACAACTCAGTACTTAG 58.556 41.667 2.41 2.41 0.00 2.18
580 582 5.444122 CAAGCAAACAACTCAGTACTTAGC 58.556 41.667 3.91 0.00 0.00 3.09
581 583 4.065789 AGCAAACAACTCAGTACTTAGCC 58.934 43.478 3.91 0.00 0.00 3.93
582 584 3.188667 GCAAACAACTCAGTACTTAGCCC 59.811 47.826 3.91 0.00 0.00 5.19
583 585 3.314541 AACAACTCAGTACTTAGCCCG 57.685 47.619 3.91 0.00 0.00 6.13
584 586 1.067071 ACAACTCAGTACTTAGCCCGC 60.067 52.381 3.91 0.00 0.00 6.13
585 587 0.535797 AACTCAGTACTTAGCCCGCC 59.464 55.000 3.91 0.00 0.00 6.13
586 588 0.613853 ACTCAGTACTTAGCCCGCCA 60.614 55.000 3.91 0.00 0.00 5.69
587 589 0.535335 CTCAGTACTTAGCCCGCCAA 59.465 55.000 0.00 0.00 0.00 4.52
588 590 0.978151 TCAGTACTTAGCCCGCCAAA 59.022 50.000 0.00 0.00 0.00 3.28
589 591 1.066430 TCAGTACTTAGCCCGCCAAAG 60.066 52.381 0.00 0.00 0.00 2.77
590 592 0.392595 AGTACTTAGCCCGCCAAAGC 60.393 55.000 0.00 0.00 0.00 3.51
591 593 1.078001 TACTTAGCCCGCCAAAGCC 60.078 57.895 0.59 0.00 34.57 4.35
592 594 1.559065 TACTTAGCCCGCCAAAGCCT 61.559 55.000 0.59 0.00 34.57 4.58
593 595 2.361104 TTAGCCCGCCAAAGCCTG 60.361 61.111 0.00 0.00 34.57 4.85
594 596 3.204467 TTAGCCCGCCAAAGCCTGT 62.204 57.895 0.00 0.00 34.57 4.00
595 597 2.706952 TTAGCCCGCCAAAGCCTGTT 62.707 55.000 0.00 0.00 34.57 3.16
596 598 4.362476 GCCCGCCAAAGCCTGTTG 62.362 66.667 0.00 0.00 34.57 3.33
598 600 3.683937 CCGCCAAAGCCTGTTGGG 61.684 66.667 12.07 4.13 46.97 4.12
607 609 4.100479 CCTGTTGGGCTTGATGCA 57.900 55.556 0.00 0.00 45.15 3.96
608 610 1.888018 CCTGTTGGGCTTGATGCAG 59.112 57.895 0.00 0.00 45.15 4.41
609 611 1.214589 CTGTTGGGCTTGATGCAGC 59.785 57.895 0.00 0.00 45.15 5.25
615 617 4.643795 GCTTGATGCAGCCTACCA 57.356 55.556 0.00 0.00 42.31 3.25
616 618 2.872408 GCTTGATGCAGCCTACCAA 58.128 52.632 0.00 0.00 42.31 3.67
617 619 1.176527 GCTTGATGCAGCCTACCAAA 58.823 50.000 0.00 0.00 42.31 3.28
618 620 1.135286 GCTTGATGCAGCCTACCAAAC 60.135 52.381 0.00 0.00 42.31 2.93
619 621 1.131126 CTTGATGCAGCCTACCAAACG 59.869 52.381 0.00 0.00 0.00 3.60
620 622 1.305219 TGATGCAGCCTACCAAACGC 61.305 55.000 0.00 0.00 0.00 4.84
621 623 2.309764 GATGCAGCCTACCAAACGCG 62.310 60.000 3.53 3.53 0.00 6.01
622 624 3.047877 GCAGCCTACCAAACGCGT 61.048 61.111 5.58 5.58 0.00 6.01
623 625 3.023591 GCAGCCTACCAAACGCGTC 62.024 63.158 14.44 0.00 0.00 5.19
624 626 1.374252 CAGCCTACCAAACGCGTCT 60.374 57.895 14.44 0.00 0.00 4.18
625 627 1.080025 AGCCTACCAAACGCGTCTC 60.080 57.895 14.44 0.00 0.00 3.36
626 628 2.442188 GCCTACCAAACGCGTCTCG 61.442 63.158 14.44 4.87 45.38 4.04
627 629 1.804326 CCTACCAAACGCGTCTCGG 60.804 63.158 14.44 16.19 43.86 4.63
628 630 1.080974 CTACCAAACGCGTCTCGGT 60.081 57.895 24.69 24.69 43.86 4.69
634 636 0.595095 AAACGCGTCTCGGTACTCTT 59.405 50.000 14.44 0.00 43.86 2.85
670 673 6.741811 CACACACCAAAAACACATGAATTTTG 59.258 34.615 19.19 19.19 41.44 2.44
688 691 4.729227 TTTGAACACAAGGGGAAGAAAC 57.271 40.909 0.00 0.00 0.00 2.78
698 701 3.256704 AGGGGAAGAAACACATGAGGTA 58.743 45.455 0.00 0.00 0.00 3.08
758 761 4.686191 TTGCCACATTTCACAGGAATTT 57.314 36.364 0.00 0.00 31.93 1.82
759 762 4.255833 TGCCACATTTCACAGGAATTTC 57.744 40.909 0.00 0.00 31.93 2.17
760 763 3.244976 GCCACATTTCACAGGAATTTCG 58.755 45.455 0.00 0.00 31.93 3.46
761 764 3.305335 GCCACATTTCACAGGAATTTCGT 60.305 43.478 0.00 0.00 31.93 3.85
762 765 4.475944 CCACATTTCACAGGAATTTCGTC 58.524 43.478 0.00 0.00 31.93 4.20
763 766 4.151070 CACATTTCACAGGAATTTCGTCG 58.849 43.478 0.00 0.00 31.93 5.12
764 767 4.062293 ACATTTCACAGGAATTTCGTCGA 58.938 39.130 0.00 0.00 31.93 4.20
765 768 4.513692 ACATTTCACAGGAATTTCGTCGAA 59.486 37.500 2.90 2.90 31.93 3.71
766 769 5.008217 ACATTTCACAGGAATTTCGTCGAAA 59.992 36.000 21.74 21.74 35.94 3.46
767 770 5.682943 TTTCACAGGAATTTCGTCGAAAT 57.317 34.783 24.09 24.09 43.07 2.17
768 771 4.921470 TCACAGGAATTTCGTCGAAATC 57.079 40.909 28.29 21.16 40.77 2.17
796 799 5.284079 CCAGACATTCTTTGTTCCAAACAG 58.716 41.667 0.00 0.00 43.27 3.16
798 801 4.051237 GACATTCTTTGTTCCAAACAGCC 58.949 43.478 0.00 0.00 43.27 4.85
801 804 1.118838 CTTTGTTCCAAACAGCCCCA 58.881 50.000 0.00 0.00 43.27 4.96
804 807 0.105760 TGTTCCAAACAGCCCCATGT 60.106 50.000 0.00 0.00 36.25 3.21
806 809 0.831288 TTCCAAACAGCCCCATGTGG 60.831 55.000 0.00 0.00 32.52 4.17
809 812 1.269012 CAAACAGCCCCATGTGGAAT 58.731 50.000 0.00 0.00 37.39 3.01
833 838 7.669089 TTTTCCTACAGAAATTCAACCCTTT 57.331 32.000 0.00 0.00 43.93 3.11
881 2352 3.198872 GCCTAGGTAGCAGAACAACATC 58.801 50.000 11.31 0.00 0.00 3.06
909 2380 2.680913 GCTACAACAGCCAGCACGG 61.681 63.158 0.00 0.00 45.23 4.94
910 2381 1.005037 CTACAACAGCCAGCACGGA 60.005 57.895 0.00 0.00 36.56 4.69
936 2407 5.530176 ATGTCACTATAAAAACCCCTGGT 57.470 39.130 0.00 0.00 37.65 4.00
956 2431 1.377202 ATGTGCTTGTACGCCCCAG 60.377 57.895 0.00 0.00 0.00 4.45
1018 2495 3.714487 ATGGGAATGAACGGCGGGG 62.714 63.158 13.24 0.00 0.00 5.73
1088 2565 3.425578 CTACGCTAGCAGCAGTTGT 57.574 52.632 16.45 4.96 42.58 3.32
1091 2568 0.532862 ACGCTAGCAGCAGTTGTTGT 60.533 50.000 16.45 0.00 42.58 3.32
1582 3062 2.202610 CGCTCGCGGAGTTCATCA 60.203 61.111 6.13 0.00 35.56 3.07
1616 3096 2.669569 GCACGCCAAGCTCAAGGA 60.670 61.111 4.15 0.00 0.00 3.36
1708 3209 4.704103 AGCTCCTGGAGTCCGCCA 62.704 66.667 23.92 0.00 36.30 5.69
2033 3534 2.180769 CGTGCTACGGTGCTAGCA 59.819 61.111 14.93 14.93 45.58 3.49
2084 3585 2.174639 TGGTGAAATCAAGGACCACTGT 59.825 45.455 0.00 0.00 33.44 3.55
2085 3586 2.554032 GGTGAAATCAAGGACCACTGTG 59.446 50.000 0.00 0.00 0.00 3.66
2089 3590 2.847327 ATCAAGGACCACTGTGACAG 57.153 50.000 11.70 11.70 37.52 3.51
2098 3609 5.721960 AGGACCACTGTGACAGATATTACTT 59.278 40.000 20.97 0.00 35.18 2.24
2103 3614 6.703607 CCACTGTGACAGATATTACTTCATCC 59.296 42.308 20.97 0.00 35.18 3.51
2134 3657 4.279659 GTTGCAACGTTTTCTTGTCCTAG 58.720 43.478 14.90 0.00 0.00 3.02
2135 3658 2.289547 TGCAACGTTTTCTTGTCCTAGC 59.710 45.455 0.00 0.00 0.00 3.42
2136 3659 2.548480 GCAACGTTTTCTTGTCCTAGCT 59.452 45.455 0.00 0.00 0.00 3.32
2193 3992 2.092049 ACCATCACAGCATCATCCATGT 60.092 45.455 0.00 0.00 34.56 3.21
2215 4016 5.468409 TGTAAAAGCTAAAGCCCAAAAATGC 59.532 36.000 0.00 0.00 43.38 3.56
2294 4112 5.047802 CCCAAATATGCCCATGTCAATACTC 60.048 44.000 0.00 0.00 0.00 2.59
2328 4146 6.816640 TCTTTAGATCCATACACTTTTCACCG 59.183 38.462 0.00 0.00 0.00 4.94
2434 4282 3.084039 TCACTCACATGCATCTTTTCCC 58.916 45.455 0.00 0.00 0.00 3.97
2474 4322 1.592064 ATGTGTTCGTGTGTGCATGA 58.408 45.000 0.00 0.00 38.74 3.07
2599 4447 1.083489 CCGTTGTGTACCAATGCGAT 58.917 50.000 9.53 0.00 38.51 4.58
2650 4498 1.066143 CACTCCAACCGCCAGTTCTAT 60.066 52.381 0.00 0.00 36.18 1.98
2659 4507 0.394565 GCCAGTTCTATGCCGAGGAT 59.605 55.000 0.00 0.00 0.00 3.24
2740 4588 1.630878 GATATCCATCCCCGAAAGCCT 59.369 52.381 0.00 0.00 0.00 4.58
2860 4708 0.251922 ACCTAGGTGGCACGAAGGTA 60.252 55.000 30.20 10.25 38.78 3.08
2906 4754 3.545481 CGCGGACTGTCGTGATGC 61.545 66.667 0.00 0.30 42.50 3.91
3158 5006 3.312890 AGCTACACTTCAGGGCTATGAT 58.687 45.455 0.00 0.00 0.00 2.45
3187 5035 2.826128 GTGTCATGGAGTCTGTGGTCTA 59.174 50.000 0.00 0.00 0.00 2.59
3335 5186 3.055747 TGTGCATGTCCCGTACTGAAATA 60.056 43.478 0.00 0.00 0.00 1.40
3438 5289 1.276421 TCAAGCTACAACTGCTCCCTC 59.724 52.381 0.00 0.00 40.22 4.30
3444 5295 0.472734 ACAACTGCTCCCTCTGTCCT 60.473 55.000 0.00 0.00 0.00 3.85
3498 5361 5.659525 TGGGAGTATGATAGAAAGAACCGAA 59.340 40.000 0.00 0.00 0.00 4.30
3499 5362 5.984323 GGGAGTATGATAGAAAGAACCGAAC 59.016 44.000 0.00 0.00 0.00 3.95
3500 5363 6.406624 GGGAGTATGATAGAAAGAACCGAACA 60.407 42.308 0.00 0.00 0.00 3.18
3501 5364 7.039882 GGAGTATGATAGAAAGAACCGAACAA 58.960 38.462 0.00 0.00 0.00 2.83
3502 5365 7.222999 GGAGTATGATAGAAAGAACCGAACAAG 59.777 40.741 0.00 0.00 0.00 3.16
3503 5366 7.837863 AGTATGATAGAAAGAACCGAACAAGA 58.162 34.615 0.00 0.00 0.00 3.02
3504 5367 8.311836 AGTATGATAGAAAGAACCGAACAAGAA 58.688 33.333 0.00 0.00 0.00 2.52
3505 5368 6.780706 TGATAGAAAGAACCGAACAAGAAC 57.219 37.500 0.00 0.00 0.00 3.01
3506 5369 5.699458 TGATAGAAAGAACCGAACAAGAACC 59.301 40.000 0.00 0.00 0.00 3.62
3507 5370 2.870411 AGAAAGAACCGAACAAGAACCG 59.130 45.455 0.00 0.00 0.00 4.44
3508 5371 2.607631 AAGAACCGAACAAGAACCGA 57.392 45.000 0.00 0.00 0.00 4.69
3658 5521 5.934935 TTCTCGGGTTAAAAAGTAGCAAG 57.065 39.130 0.00 0.00 0.00 4.01
3668 5531 9.961265 GGTTAAAAAGTAGCAAGAAAATACACT 57.039 29.630 0.00 0.00 0.00 3.55
3693 5556 7.575414 TTCAGAGCTGGTGTAATTAAAAACA 57.425 32.000 0.00 0.00 0.00 2.83
3741 5605 4.851639 ATCTGAACTCTAGGGCAAATGT 57.148 40.909 0.00 0.00 0.00 2.71
3854 5718 2.848858 GCCATTGGCTACGCATGGG 61.849 63.158 20.66 8.44 46.69 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.143305 CTGGCCATCAATCGATCGAC 58.857 55.000 22.06 5.46 0.00 4.20
20 21 1.531423 ATGCTGGCCATCAATCGATC 58.469 50.000 14.28 0.00 0.00 3.69
21 22 3.739703 ATGCTGGCCATCAATCGAT 57.260 47.368 14.28 0.00 0.00 3.59
67 68 1.079405 CAATGCAAGCCAAGCCCAG 60.079 57.895 0.00 0.00 0.00 4.45
111 112 1.594194 GCCAACCCATGAACGATGCA 61.594 55.000 0.00 0.00 0.00 3.96
125 126 1.620822 ACCCAAACAGATCTGCCAAC 58.379 50.000 22.83 0.00 0.00 3.77
128 129 3.350219 TTCTACCCAAACAGATCTGCC 57.650 47.619 22.83 0.00 0.00 4.85
161 162 9.590451 CAAAAGATGCCAGATTAACACAAATAT 57.410 29.630 0.00 0.00 0.00 1.28
163 164 7.444299 ACAAAAGATGCCAGATTAACACAAAT 58.556 30.769 0.00 0.00 0.00 2.32
164 165 6.815089 ACAAAAGATGCCAGATTAACACAAA 58.185 32.000 0.00 0.00 0.00 2.83
165 166 6.403866 ACAAAAGATGCCAGATTAACACAA 57.596 33.333 0.00 0.00 0.00 3.33
184 185 6.243216 AGTCACAACTTAGTAGGGAACAAA 57.757 37.500 0.00 0.00 28.74 2.83
187 188 6.587206 AGTAGTCACAACTTAGTAGGGAAC 57.413 41.667 0.00 0.00 36.92 3.62
188 189 7.946776 ACTTAGTAGTCACAACTTAGTAGGGAA 59.053 37.037 0.00 0.00 35.64 3.97
190 191 7.700022 ACTTAGTAGTCACAACTTAGTAGGG 57.300 40.000 0.00 0.00 35.64 3.53
193 194 7.725397 TGGGAACTTAGTAGTCACAACTTAGTA 59.275 37.037 0.00 0.00 36.19 1.82
194 195 6.552350 TGGGAACTTAGTAGTCACAACTTAGT 59.448 38.462 0.00 0.00 38.19 2.24
195 196 6.989659 TGGGAACTTAGTAGTCACAACTTAG 58.010 40.000 0.00 0.00 36.92 2.18
196 197 6.982160 TGGGAACTTAGTAGTCACAACTTA 57.018 37.500 0.00 0.00 36.92 2.24
197 198 5.881923 TGGGAACTTAGTAGTCACAACTT 57.118 39.130 0.00 0.00 36.92 2.66
198 199 6.435292 AATGGGAACTTAGTAGTCACAACT 57.565 37.500 0.00 0.00 39.66 3.16
199 200 6.708949 TGAAATGGGAACTTAGTAGTCACAAC 59.291 38.462 0.00 0.00 31.99 3.32
200 201 6.833041 TGAAATGGGAACTTAGTAGTCACAA 58.167 36.000 0.00 0.00 31.99 3.33
201 202 6.428083 TGAAATGGGAACTTAGTAGTCACA 57.572 37.500 0.00 0.00 31.99 3.58
202 203 7.570691 CGTTTGAAATGGGAACTTAGTAGTCAC 60.571 40.741 0.00 0.00 31.99 3.67
203 204 6.425721 CGTTTGAAATGGGAACTTAGTAGTCA 59.574 38.462 0.00 0.00 31.99 3.41
204 205 6.426025 ACGTTTGAAATGGGAACTTAGTAGTC 59.574 38.462 1.86 0.00 31.99 2.59
205 206 6.293698 ACGTTTGAAATGGGAACTTAGTAGT 58.706 36.000 1.86 0.00 35.68 2.73
209 210 5.935789 TCCTACGTTTGAAATGGGAACTTAG 59.064 40.000 0.00 0.00 0.00 2.18
239 240 9.445878 TTGCATGCCATCTATTTTTCATTTTTA 57.554 25.926 16.68 0.00 0.00 1.52
243 244 5.818857 GGTTGCATGCCATCTATTTTTCATT 59.181 36.000 16.68 0.00 0.00 2.57
245 246 4.467082 AGGTTGCATGCCATCTATTTTTCA 59.533 37.500 16.68 0.00 0.00 2.69
246 247 4.807304 CAGGTTGCATGCCATCTATTTTTC 59.193 41.667 16.68 0.00 0.00 2.29
248 249 4.025360 TCAGGTTGCATGCCATCTATTTT 58.975 39.130 16.68 0.00 0.00 1.82
249 250 3.634504 TCAGGTTGCATGCCATCTATTT 58.365 40.909 16.68 0.00 0.00 1.40
250 251 3.301794 TCAGGTTGCATGCCATCTATT 57.698 42.857 16.68 0.00 0.00 1.73
251 252 3.520691 ATCAGGTTGCATGCCATCTAT 57.479 42.857 16.68 2.07 0.00 1.98
252 253 3.301794 AATCAGGTTGCATGCCATCTA 57.698 42.857 16.68 0.00 0.00 1.98
253 254 2.154567 AATCAGGTTGCATGCCATCT 57.845 45.000 16.68 7.05 0.00 2.90
258 259 2.099756 GGTAGGAAATCAGGTTGCATGC 59.900 50.000 11.82 11.82 0.00 4.06
293 295 1.737793 CACGTTCTTGGAGTATTGCCC 59.262 52.381 0.00 0.00 0.00 5.36
304 306 4.668837 CGAATGTAACCAAACACGTTCTTG 59.331 41.667 0.00 0.00 38.14 3.02
306 308 3.303526 GCGAATGTAACCAAACACGTTCT 60.304 43.478 0.00 0.00 38.14 3.01
307 309 2.968655 GCGAATGTAACCAAACACGTTC 59.031 45.455 0.00 0.00 37.33 3.95
308 310 2.355132 TGCGAATGTAACCAAACACGTT 59.645 40.909 0.00 0.00 30.75 3.99
309 311 1.941294 TGCGAATGTAACCAAACACGT 59.059 42.857 0.00 0.00 30.75 4.49
310 312 2.672188 TGCGAATGTAACCAAACACG 57.328 45.000 0.00 0.00 30.75 4.49
311 313 3.672867 CCATTGCGAATGTAACCAAACAC 59.327 43.478 7.71 0.00 37.18 3.32
312 314 3.570125 TCCATTGCGAATGTAACCAAACA 59.430 39.130 7.71 0.00 37.18 2.83
313 315 4.165779 CTCCATTGCGAATGTAACCAAAC 58.834 43.478 7.71 0.00 37.18 2.93
314 316 3.366883 GCTCCATTGCGAATGTAACCAAA 60.367 43.478 7.71 0.00 37.18 3.28
315 317 2.163412 GCTCCATTGCGAATGTAACCAA 59.837 45.455 7.71 0.00 37.18 3.67
316 318 1.742831 GCTCCATTGCGAATGTAACCA 59.257 47.619 7.71 0.00 37.18 3.67
317 319 1.065551 GGCTCCATTGCGAATGTAACC 59.934 52.381 7.71 3.39 37.18 2.85
318 320 2.017049 AGGCTCCATTGCGAATGTAAC 58.983 47.619 7.71 0.00 37.18 2.50
319 321 2.016318 CAGGCTCCATTGCGAATGTAA 58.984 47.619 7.71 0.00 37.18 2.41
320 322 1.667236 CAGGCTCCATTGCGAATGTA 58.333 50.000 7.71 0.00 37.18 2.29
321 323 1.660560 GCAGGCTCCATTGCGAATGT 61.661 55.000 7.71 0.00 37.18 2.71
322 324 1.065273 GCAGGCTCCATTGCGAATG 59.935 57.895 0.00 0.00 38.63 2.67
323 325 2.123428 GGCAGGCTCCATTGCGAAT 61.123 57.895 0.00 0.00 41.17 3.34
324 326 2.751436 GGCAGGCTCCATTGCGAA 60.751 61.111 0.00 0.00 41.17 4.70
325 327 4.802051 GGGCAGGCTCCATTGCGA 62.802 66.667 0.00 0.00 41.17 5.10
327 329 4.764771 TGGGGCAGGCTCCATTGC 62.765 66.667 9.25 0.00 42.59 3.56
328 330 2.441532 CTGGGGCAGGCTCCATTG 60.442 66.667 14.29 0.00 46.90 2.82
329 331 2.943265 ACTGGGGCAGGCTCCATT 60.943 61.111 14.29 5.09 46.90 3.16
330 332 3.736224 CACTGGGGCAGGCTCCAT 61.736 66.667 14.29 1.27 46.90 3.41
333 335 4.106925 CTCCACTGGGGCAGGCTC 62.107 72.222 0.00 0.00 35.51 4.70
337 339 4.421515 CAGGCTCCACTGGGGCAG 62.422 72.222 21.96 9.62 37.52 4.85
339 341 2.137177 TAAACAGGCTCCACTGGGGC 62.137 60.000 12.04 12.04 42.75 5.80
340 342 0.404040 TTAAACAGGCTCCACTGGGG 59.596 55.000 0.00 0.00 42.75 4.96
341 343 1.351017 TCTTAAACAGGCTCCACTGGG 59.649 52.381 0.00 0.00 42.75 4.45
342 344 2.859165 TCTTAAACAGGCTCCACTGG 57.141 50.000 0.00 0.00 42.75 4.00
343 345 3.372206 CGAATCTTAAACAGGCTCCACTG 59.628 47.826 0.00 0.00 44.03 3.66
344 346 3.600388 CGAATCTTAAACAGGCTCCACT 58.400 45.455 0.00 0.00 0.00 4.00
345 347 2.096013 GCGAATCTTAAACAGGCTCCAC 59.904 50.000 0.00 0.00 0.00 4.02
346 348 2.290008 TGCGAATCTTAAACAGGCTCCA 60.290 45.455 0.00 0.00 0.00 3.86
347 349 2.356135 TGCGAATCTTAAACAGGCTCC 58.644 47.619 0.00 0.00 0.00 4.70
348 350 4.346129 CATTGCGAATCTTAAACAGGCTC 58.654 43.478 0.00 0.00 0.00 4.70
349 351 3.129287 CCATTGCGAATCTTAAACAGGCT 59.871 43.478 0.00 0.00 0.00 4.58
350 352 3.128589 TCCATTGCGAATCTTAAACAGGC 59.871 43.478 0.00 0.00 0.00 4.85
351 353 4.731773 GCTCCATTGCGAATCTTAAACAGG 60.732 45.833 0.00 0.00 0.00 4.00
352 354 4.346129 GCTCCATTGCGAATCTTAAACAG 58.654 43.478 0.00 0.00 0.00 3.16
353 355 3.128589 GGCTCCATTGCGAATCTTAAACA 59.871 43.478 0.00 0.00 0.00 2.83
354 356 3.378427 AGGCTCCATTGCGAATCTTAAAC 59.622 43.478 0.00 0.00 0.00 2.01
355 357 3.378112 CAGGCTCCATTGCGAATCTTAAA 59.622 43.478 0.00 0.00 0.00 1.52
356 358 2.945008 CAGGCTCCATTGCGAATCTTAA 59.055 45.455 0.00 0.00 0.00 1.85
357 359 2.092968 ACAGGCTCCATTGCGAATCTTA 60.093 45.455 0.00 0.00 0.00 2.10
358 360 1.340405 ACAGGCTCCATTGCGAATCTT 60.340 47.619 0.00 0.00 0.00 2.40
359 361 0.254178 ACAGGCTCCATTGCGAATCT 59.746 50.000 0.00 0.00 0.00 2.40
360 362 1.098050 AACAGGCTCCATTGCGAATC 58.902 50.000 0.00 0.00 0.00 2.52
361 363 1.549203 AAACAGGCTCCATTGCGAAT 58.451 45.000 0.00 0.00 0.00 3.34
362 364 2.192664 TAAACAGGCTCCATTGCGAA 57.807 45.000 0.00 0.00 0.00 4.70
363 365 2.083774 CTTAAACAGGCTCCATTGCGA 58.916 47.619 0.00 0.00 0.00 5.10
364 366 1.133025 CCTTAAACAGGCTCCATTGCG 59.867 52.381 0.00 0.00 35.13 4.85
365 367 1.478105 CCCTTAAACAGGCTCCATTGC 59.522 52.381 0.00 0.00 42.29 3.56
366 368 2.807676 ACCCTTAAACAGGCTCCATTG 58.192 47.619 0.00 0.00 42.29 2.82
367 369 4.881157 ATACCCTTAAACAGGCTCCATT 57.119 40.909 0.00 0.00 42.29 3.16
368 370 7.023120 TCTATATACCCTTAAACAGGCTCCAT 58.977 38.462 0.00 0.00 42.29 3.41
369 371 6.269307 GTCTATATACCCTTAAACAGGCTCCA 59.731 42.308 0.00 0.00 42.29 3.86
370 372 6.497606 AGTCTATATACCCTTAAACAGGCTCC 59.502 42.308 0.00 0.00 42.29 4.70
371 373 7.452189 AGAGTCTATATACCCTTAAACAGGCTC 59.548 40.741 0.00 0.00 42.29 4.70
372 374 7.233757 CAGAGTCTATATACCCTTAAACAGGCT 59.766 40.741 0.00 0.00 42.29 4.58
373 375 7.379750 CAGAGTCTATATACCCTTAAACAGGC 58.620 42.308 0.00 0.00 42.29 4.85
374 376 7.728981 TCCAGAGTCTATATACCCTTAAACAGG 59.271 40.741 0.00 0.00 43.49 4.00
375 377 8.707796 TCCAGAGTCTATATACCCTTAAACAG 57.292 38.462 0.00 0.00 0.00 3.16
381 383 9.707957 CAGAATATCCAGAGTCTATATACCCTT 57.292 37.037 0.00 0.00 0.00 3.95
382 384 7.782644 GCAGAATATCCAGAGTCTATATACCCT 59.217 40.741 0.00 0.00 0.00 4.34
383 385 7.561722 TGCAGAATATCCAGAGTCTATATACCC 59.438 40.741 0.00 0.00 0.00 3.69
384 386 8.526667 TGCAGAATATCCAGAGTCTATATACC 57.473 38.462 0.00 0.00 0.00 2.73
385 387 9.964303 CATGCAGAATATCCAGAGTCTATATAC 57.036 37.037 0.00 0.00 0.00 1.47
386 388 9.706529 ACATGCAGAATATCCAGAGTCTATATA 57.293 33.333 0.00 0.00 0.00 0.86
387 389 8.606754 ACATGCAGAATATCCAGAGTCTATAT 57.393 34.615 0.00 0.00 0.00 0.86
388 390 7.148171 CGACATGCAGAATATCCAGAGTCTATA 60.148 40.741 0.00 0.00 0.00 1.31
389 391 6.350027 CGACATGCAGAATATCCAGAGTCTAT 60.350 42.308 0.00 0.00 0.00 1.98
390 392 5.048434 CGACATGCAGAATATCCAGAGTCTA 60.048 44.000 0.00 0.00 0.00 2.59
391 393 4.261952 CGACATGCAGAATATCCAGAGTCT 60.262 45.833 0.00 0.00 0.00 3.24
392 394 3.986572 CGACATGCAGAATATCCAGAGTC 59.013 47.826 0.00 0.00 0.00 3.36
393 395 3.386078 ACGACATGCAGAATATCCAGAGT 59.614 43.478 0.00 0.00 0.00 3.24
394 396 3.987547 ACGACATGCAGAATATCCAGAG 58.012 45.455 0.00 0.00 0.00 3.35
395 397 4.406648 AACGACATGCAGAATATCCAGA 57.593 40.909 0.00 0.00 0.00 3.86
396 398 4.260907 CCAAACGACATGCAGAATATCCAG 60.261 45.833 0.00 0.00 0.00 3.86
397 399 3.627123 CCAAACGACATGCAGAATATCCA 59.373 43.478 0.00 0.00 0.00 3.41
398 400 3.627577 ACCAAACGACATGCAGAATATCC 59.372 43.478 0.00 0.00 0.00 2.59
399 401 4.882671 ACCAAACGACATGCAGAATATC 57.117 40.909 0.00 0.00 0.00 1.63
400 402 4.675146 GCAACCAAACGACATGCAGAATAT 60.675 41.667 0.00 0.00 37.00 1.28
401 403 3.365868 GCAACCAAACGACATGCAGAATA 60.366 43.478 0.00 0.00 37.00 1.75
402 404 2.607771 GCAACCAAACGACATGCAGAAT 60.608 45.455 0.00 0.00 37.00 2.40
403 405 1.268999 GCAACCAAACGACATGCAGAA 60.269 47.619 0.00 0.00 37.00 3.02
404 406 0.310543 GCAACCAAACGACATGCAGA 59.689 50.000 0.00 0.00 37.00 4.26
405 407 0.664166 GGCAACCAAACGACATGCAG 60.664 55.000 0.00 0.00 38.73 4.41
406 408 1.106351 AGGCAACCAAACGACATGCA 61.106 50.000 0.00 0.00 38.73 3.96
407 409 0.664166 CAGGCAACCAAACGACATGC 60.664 55.000 0.00 0.00 36.31 4.06
408 410 0.664166 GCAGGCAACCAAACGACATG 60.664 55.000 0.00 0.00 37.17 3.21
409 411 1.106351 TGCAGGCAACCAAACGACAT 61.106 50.000 0.00 0.00 37.17 3.06
410 412 1.106351 ATGCAGGCAACCAAACGACA 61.106 50.000 0.00 0.00 37.17 4.35
411 413 0.031994 AATGCAGGCAACCAAACGAC 59.968 50.000 0.00 0.00 37.17 4.34
412 414 0.749649 AAATGCAGGCAACCAAACGA 59.250 45.000 0.00 0.00 37.17 3.85
413 415 0.860533 CAAATGCAGGCAACCAAACG 59.139 50.000 0.00 0.00 37.17 3.60
414 416 1.202627 TCCAAATGCAGGCAACCAAAC 60.203 47.619 0.00 0.00 37.17 2.93
415 417 1.126488 TCCAAATGCAGGCAACCAAA 58.874 45.000 0.00 0.00 37.17 3.28
416 418 0.392336 GTCCAAATGCAGGCAACCAA 59.608 50.000 0.00 0.00 37.17 3.67
417 419 1.470996 GGTCCAAATGCAGGCAACCA 61.471 55.000 7.10 0.00 37.17 3.67
418 420 1.293179 GGTCCAAATGCAGGCAACC 59.707 57.895 0.00 0.00 37.17 3.77
419 421 0.037975 CTGGTCCAAATGCAGGCAAC 60.038 55.000 0.00 0.00 0.00 4.17
420 422 1.818959 GCTGGTCCAAATGCAGGCAA 61.819 55.000 0.00 0.00 0.00 4.52
421 423 2.277591 GCTGGTCCAAATGCAGGCA 61.278 57.895 0.00 0.00 0.00 4.75
422 424 1.538687 AAGCTGGTCCAAATGCAGGC 61.539 55.000 4.55 0.00 0.00 4.85
423 425 0.971386 AAAGCTGGTCCAAATGCAGG 59.029 50.000 4.55 0.00 0.00 4.85
424 426 1.614903 TGAAAGCTGGTCCAAATGCAG 59.385 47.619 4.55 0.00 0.00 4.41
425 427 1.702182 TGAAAGCTGGTCCAAATGCA 58.298 45.000 4.55 0.00 0.00 3.96
426 428 2.417787 GGATGAAAGCTGGTCCAAATGC 60.418 50.000 0.00 0.00 0.00 3.56
427 429 3.094572 AGGATGAAAGCTGGTCCAAATG 58.905 45.455 8.94 0.00 33.12 2.32
428 430 3.011032 AGAGGATGAAAGCTGGTCCAAAT 59.989 43.478 8.94 0.00 33.12 2.32
429 431 2.376518 AGAGGATGAAAGCTGGTCCAAA 59.623 45.455 8.94 0.00 33.12 3.28
430 432 1.988107 AGAGGATGAAAGCTGGTCCAA 59.012 47.619 8.94 0.00 33.12 3.53
431 433 1.661463 AGAGGATGAAAGCTGGTCCA 58.339 50.000 8.94 0.00 33.12 4.02
432 434 2.751806 CAAAGAGGATGAAAGCTGGTCC 59.248 50.000 0.00 0.00 0.00 4.46
433 435 3.416156 ACAAAGAGGATGAAAGCTGGTC 58.584 45.455 0.00 0.00 0.00 4.02
434 436 3.515602 ACAAAGAGGATGAAAGCTGGT 57.484 42.857 0.00 0.00 0.00 4.00
435 437 4.394300 CACTACAAAGAGGATGAAAGCTGG 59.606 45.833 0.00 0.00 0.00 4.85
436 438 4.999950 ACACTACAAAGAGGATGAAAGCTG 59.000 41.667 0.00 0.00 0.00 4.24
437 439 5.234466 ACACTACAAAGAGGATGAAAGCT 57.766 39.130 0.00 0.00 0.00 3.74
438 440 7.435068 TTTACACTACAAAGAGGATGAAAGC 57.565 36.000 0.00 0.00 0.00 3.51
439 441 9.831737 CAATTTACACTACAAAGAGGATGAAAG 57.168 33.333 0.00 0.00 0.00 2.62
440 442 8.296713 GCAATTTACACTACAAAGAGGATGAAA 58.703 33.333 0.00 0.00 0.00 2.69
441 443 7.446931 TGCAATTTACACTACAAAGAGGATGAA 59.553 33.333 0.00 0.00 0.00 2.57
442 444 6.939730 TGCAATTTACACTACAAAGAGGATGA 59.060 34.615 0.00 0.00 0.00 2.92
443 445 7.023575 GTGCAATTTACACTACAAAGAGGATG 58.976 38.462 0.00 0.00 35.12 3.51
444 446 6.942576 AGTGCAATTTACACTACAAAGAGGAT 59.057 34.615 8.76 0.00 46.32 3.24
445 447 6.296026 AGTGCAATTTACACTACAAAGAGGA 58.704 36.000 8.76 0.00 46.32 3.71
446 448 6.560253 AGTGCAATTTACACTACAAAGAGG 57.440 37.500 8.76 0.00 46.32 3.69
447 449 7.624344 GCCTAGTGCAATTTACACTACAAAGAG 60.624 40.741 12.14 5.68 46.32 2.85
448 450 6.148811 GCCTAGTGCAATTTACACTACAAAGA 59.851 38.462 12.14 0.00 46.32 2.52
449 451 6.314784 GCCTAGTGCAATTTACACTACAAAG 58.685 40.000 12.14 6.50 46.32 2.77
450 452 5.182380 GGCCTAGTGCAATTTACACTACAAA 59.818 40.000 12.14 0.00 46.32 2.83
451 453 4.698304 GGCCTAGTGCAATTTACACTACAA 59.302 41.667 12.14 0.00 46.32 2.41
452 454 4.258543 GGCCTAGTGCAATTTACACTACA 58.741 43.478 12.14 0.00 46.32 2.74
453 455 3.308866 CGGCCTAGTGCAATTTACACTAC 59.691 47.826 12.14 5.99 46.32 2.73
454 456 3.196039 TCGGCCTAGTGCAATTTACACTA 59.804 43.478 14.43 14.43 46.32 2.74
456 458 2.351726 CTCGGCCTAGTGCAATTTACAC 59.648 50.000 0.00 0.89 43.89 2.90
457 459 2.027561 ACTCGGCCTAGTGCAATTTACA 60.028 45.455 9.53 0.00 43.89 2.41
458 460 2.608090 GACTCGGCCTAGTGCAATTTAC 59.392 50.000 15.82 0.00 43.89 2.01
459 461 2.500098 AGACTCGGCCTAGTGCAATTTA 59.500 45.455 15.82 0.00 43.89 1.40
460 462 1.279271 AGACTCGGCCTAGTGCAATTT 59.721 47.619 15.82 0.00 43.89 1.82
461 463 0.905357 AGACTCGGCCTAGTGCAATT 59.095 50.000 15.82 0.00 43.89 2.32
462 464 0.176680 CAGACTCGGCCTAGTGCAAT 59.823 55.000 15.82 0.00 43.89 3.56
463 465 1.591703 CAGACTCGGCCTAGTGCAA 59.408 57.895 15.82 0.00 43.89 4.08
464 466 3.006756 GCAGACTCGGCCTAGTGCA 62.007 63.158 15.82 0.00 43.89 4.57
465 467 2.202810 GCAGACTCGGCCTAGTGC 60.203 66.667 15.82 9.38 40.16 4.40
466 468 1.032794 TATGCAGACTCGGCCTAGTG 58.967 55.000 15.82 2.40 0.00 2.74
467 469 1.615883 CATATGCAGACTCGGCCTAGT 59.384 52.381 10.19 10.19 0.00 2.57
468 470 1.671261 GCATATGCAGACTCGGCCTAG 60.671 57.143 22.84 1.98 41.59 3.02
469 471 0.318441 GCATATGCAGACTCGGCCTA 59.682 55.000 22.84 0.00 41.59 3.93
470 472 1.070445 GCATATGCAGACTCGGCCT 59.930 57.895 22.84 0.00 41.59 5.19
471 473 3.647824 GCATATGCAGACTCGGCC 58.352 61.111 22.84 0.00 41.59 6.13
481 483 5.349270 TCAAATCAGCTGTTTTTGCATATGC 59.651 36.000 26.25 21.09 42.50 3.14
482 484 6.954616 TCAAATCAGCTGTTTTTGCATATG 57.045 33.333 26.25 14.45 31.88 1.78
483 485 7.604927 ACATTCAAATCAGCTGTTTTTGCATAT 59.395 29.630 26.25 19.51 31.88 1.78
484 486 6.930164 ACATTCAAATCAGCTGTTTTTGCATA 59.070 30.769 26.25 18.66 31.88 3.14
485 487 5.761234 ACATTCAAATCAGCTGTTTTTGCAT 59.239 32.000 26.25 21.78 31.88 3.96
486 488 5.117584 ACATTCAAATCAGCTGTTTTTGCA 58.882 33.333 26.25 20.92 31.88 4.08
487 489 5.662211 ACATTCAAATCAGCTGTTTTTGC 57.338 34.783 26.25 0.00 31.88 3.68
488 490 7.473027 AGAACATTCAAATCAGCTGTTTTTG 57.527 32.000 25.64 25.64 30.63 2.44
489 491 7.011669 CCAAGAACATTCAAATCAGCTGTTTTT 59.988 33.333 18.05 13.96 30.63 1.94
490 492 6.480981 CCAAGAACATTCAAATCAGCTGTTTT 59.519 34.615 14.67 15.14 30.63 2.43
491 493 5.987347 CCAAGAACATTCAAATCAGCTGTTT 59.013 36.000 14.67 9.11 30.63 2.83
492 494 5.535333 CCAAGAACATTCAAATCAGCTGTT 58.465 37.500 14.67 1.65 33.02 3.16
493 495 4.560108 GCCAAGAACATTCAAATCAGCTGT 60.560 41.667 14.67 0.00 0.00 4.40
494 496 3.924686 GCCAAGAACATTCAAATCAGCTG 59.075 43.478 7.63 7.63 0.00 4.24
495 497 3.366679 CGCCAAGAACATTCAAATCAGCT 60.367 43.478 0.00 0.00 0.00 4.24
496 498 2.919229 CGCCAAGAACATTCAAATCAGC 59.081 45.455 0.00 0.00 0.00 4.26
497 499 3.504863 CCGCCAAGAACATTCAAATCAG 58.495 45.455 0.00 0.00 0.00 2.90
498 500 2.230992 CCCGCCAAGAACATTCAAATCA 59.769 45.455 0.00 0.00 0.00 2.57
499 501 2.879826 CCCGCCAAGAACATTCAAATC 58.120 47.619 0.00 0.00 0.00 2.17
500 502 1.066929 GCCCGCCAAGAACATTCAAAT 60.067 47.619 0.00 0.00 0.00 2.32
501 503 0.316841 GCCCGCCAAGAACATTCAAA 59.683 50.000 0.00 0.00 0.00 2.69
502 504 1.531739 GGCCCGCCAAGAACATTCAA 61.532 55.000 0.00 0.00 35.81 2.69
503 505 1.976474 GGCCCGCCAAGAACATTCA 60.976 57.895 0.00 0.00 35.81 2.57
504 506 0.393808 TAGGCCCGCCAAGAACATTC 60.394 55.000 8.74 0.00 38.92 2.67
505 507 0.394352 CTAGGCCCGCCAAGAACATT 60.394 55.000 8.74 0.00 38.92 2.71
506 508 1.224592 CTAGGCCCGCCAAGAACAT 59.775 57.895 8.74 0.00 38.92 2.71
507 509 2.668632 CTAGGCCCGCCAAGAACA 59.331 61.111 8.74 0.00 38.92 3.18
508 510 2.824489 GCTAGGCCCGCCAAGAAC 60.824 66.667 8.74 0.00 38.92 3.01
509 511 4.109675 GGCTAGGCCCGCCAAGAA 62.110 66.667 24.70 0.00 46.77 2.52
519 521 0.462047 TAAAGCGCTCTTGGCTAGGC 60.462 55.000 12.06 9.85 40.53 3.93
520 522 1.936547 CTTAAAGCGCTCTTGGCTAGG 59.063 52.381 12.06 0.00 40.53 3.02
521 523 2.622436 ACTTAAAGCGCTCTTGGCTAG 58.378 47.619 12.06 4.25 40.53 3.42
522 524 2.762535 ACTTAAAGCGCTCTTGGCTA 57.237 45.000 12.06 0.00 40.53 3.93
523 525 1.807142 GAACTTAAAGCGCTCTTGGCT 59.193 47.619 12.06 0.00 44.02 4.75
524 526 1.135660 GGAACTTAAAGCGCTCTTGGC 60.136 52.381 12.06 0.00 31.78 4.52
525 527 1.128692 CGGAACTTAAAGCGCTCTTGG 59.871 52.381 12.06 4.50 31.78 3.61
526 528 1.798813 ACGGAACTTAAAGCGCTCTTG 59.201 47.619 12.06 4.08 31.78 3.02
527 529 1.798813 CACGGAACTTAAAGCGCTCTT 59.201 47.619 12.06 10.24 0.00 2.85
528 530 1.429463 CACGGAACTTAAAGCGCTCT 58.571 50.000 12.06 0.00 0.00 4.09
529 531 0.179222 GCACGGAACTTAAAGCGCTC 60.179 55.000 12.06 0.00 0.00 5.03
530 532 0.882927 TGCACGGAACTTAAAGCGCT 60.883 50.000 2.64 2.64 0.00 5.92
531 533 0.040781 TTGCACGGAACTTAAAGCGC 60.041 50.000 0.00 0.00 0.00 5.92
532 534 1.950472 CTTGCACGGAACTTAAAGCG 58.050 50.000 0.00 0.00 0.00 4.68
533 535 1.666023 GGCTTGCACGGAACTTAAAGC 60.666 52.381 0.00 0.00 39.38 3.51
534 536 1.606668 TGGCTTGCACGGAACTTAAAG 59.393 47.619 0.00 0.00 0.00 1.85
535 537 1.606668 CTGGCTTGCACGGAACTTAAA 59.393 47.619 0.00 0.00 0.00 1.52
536 538 1.234821 CTGGCTTGCACGGAACTTAA 58.765 50.000 0.00 0.00 0.00 1.85
537 539 0.605319 CCTGGCTTGCACGGAACTTA 60.605 55.000 0.00 0.00 0.00 2.24
538 540 1.898574 CCTGGCTTGCACGGAACTT 60.899 57.895 0.00 0.00 0.00 2.66
539 541 2.281761 CCTGGCTTGCACGGAACT 60.282 61.111 0.00 0.00 0.00 3.01
540 542 4.043200 GCCTGGCTTGCACGGAAC 62.043 66.667 12.43 0.00 0.00 3.62
541 543 4.577677 TGCCTGGCTTGCACGGAA 62.578 61.111 21.03 0.00 32.85 4.30
542 544 4.577677 TTGCCTGGCTTGCACGGA 62.578 61.111 21.03 0.00 38.72 4.69
543 545 4.047059 CTTGCCTGGCTTGCACGG 62.047 66.667 21.03 0.00 38.72 4.94
544 546 4.712425 GCTTGCCTGGCTTGCACG 62.712 66.667 21.03 0.00 38.72 5.34
545 547 2.647680 TTTGCTTGCCTGGCTTGCAC 62.648 55.000 28.61 12.79 38.72 4.57
546 548 2.433146 TTTGCTTGCCTGGCTTGCA 61.433 52.632 26.34 26.34 36.28 4.08
547 549 1.957695 GTTTGCTTGCCTGGCTTGC 60.958 57.895 21.03 22.06 0.00 4.01
548 550 0.179078 TTGTTTGCTTGCCTGGCTTG 60.179 50.000 21.03 13.18 0.00 4.01
549 551 0.179076 GTTGTTTGCTTGCCTGGCTT 60.179 50.000 21.03 0.00 0.00 4.35
550 552 1.044790 AGTTGTTTGCTTGCCTGGCT 61.045 50.000 21.03 0.00 0.00 4.75
551 553 0.598419 GAGTTGTTTGCTTGCCTGGC 60.598 55.000 12.87 12.87 0.00 4.85
552 554 0.746063 TGAGTTGTTTGCTTGCCTGG 59.254 50.000 0.00 0.00 0.00 4.45
553 555 1.406539 ACTGAGTTGTTTGCTTGCCTG 59.593 47.619 0.00 0.00 0.00 4.85
554 556 1.767759 ACTGAGTTGTTTGCTTGCCT 58.232 45.000 0.00 0.00 0.00 4.75
555 557 2.618709 AGTACTGAGTTGTTTGCTTGCC 59.381 45.455 0.00 0.00 0.00 4.52
556 558 3.971032 AGTACTGAGTTGTTTGCTTGC 57.029 42.857 0.00 0.00 0.00 4.01
557 559 5.444122 GCTAAGTACTGAGTTGTTTGCTTG 58.556 41.667 9.11 0.00 0.00 4.01
558 560 4.515567 GGCTAAGTACTGAGTTGTTTGCTT 59.484 41.667 9.11 0.00 0.00 3.91
559 561 4.065789 GGCTAAGTACTGAGTTGTTTGCT 58.934 43.478 9.11 0.00 0.00 3.91
560 562 3.188667 GGGCTAAGTACTGAGTTGTTTGC 59.811 47.826 9.11 0.00 0.00 3.68
561 563 3.432252 CGGGCTAAGTACTGAGTTGTTTG 59.568 47.826 9.11 0.00 0.00 2.93
562 564 3.660865 CGGGCTAAGTACTGAGTTGTTT 58.339 45.455 9.11 0.00 0.00 2.83
563 565 2.612221 GCGGGCTAAGTACTGAGTTGTT 60.612 50.000 9.11 0.00 0.00 2.83
564 566 1.067071 GCGGGCTAAGTACTGAGTTGT 60.067 52.381 9.11 0.00 0.00 3.32
565 567 1.641577 GCGGGCTAAGTACTGAGTTG 58.358 55.000 9.11 0.78 0.00 3.16
566 568 0.535797 GGCGGGCTAAGTACTGAGTT 59.464 55.000 9.11 0.00 0.00 3.01
567 569 0.613853 TGGCGGGCTAAGTACTGAGT 60.614 55.000 9.11 0.00 0.00 3.41
568 570 0.535335 TTGGCGGGCTAAGTACTGAG 59.465 55.000 2.41 2.41 0.00 3.35
569 571 0.978151 TTTGGCGGGCTAAGTACTGA 59.022 50.000 0.00 0.00 0.00 3.41
570 572 1.369625 CTTTGGCGGGCTAAGTACTG 58.630 55.000 15.58 0.00 0.00 2.74
571 573 0.392595 GCTTTGGCGGGCTAAGTACT 60.393 55.000 22.26 0.00 0.00 2.73
572 574 1.374343 GGCTTTGGCGGGCTAAGTAC 61.374 60.000 22.26 14.22 39.81 2.73
573 575 1.078001 GGCTTTGGCGGGCTAAGTA 60.078 57.895 22.26 0.00 39.81 2.24
574 576 2.361230 GGCTTTGGCGGGCTAAGT 60.361 61.111 22.26 0.00 39.81 2.24
575 577 2.044946 AGGCTTTGGCGGGCTAAG 60.045 61.111 18.61 18.61 37.82 2.18
576 578 2.361104 CAGGCTTTGGCGGGCTAA 60.361 61.111 2.38 0.06 37.82 3.09
577 579 3.204467 AACAGGCTTTGGCGGGCTA 62.204 57.895 2.38 0.00 37.82 3.93
578 580 4.603535 AACAGGCTTTGGCGGGCT 62.604 61.111 2.38 0.00 39.81 5.19
579 581 4.362476 CAACAGGCTTTGGCGGGC 62.362 66.667 0.00 0.00 39.81 6.13
580 582 3.683937 CCAACAGGCTTTGGCGGG 61.684 66.667 13.13 0.00 39.78 6.13
581 583 3.683937 CCCAACAGGCTTTGGCGG 61.684 66.667 17.68 6.62 44.29 6.13
590 592 1.888018 CTGCATCAAGCCCAACAGG 59.112 57.895 0.00 0.00 44.83 4.00
591 593 1.214589 GCTGCATCAAGCCCAACAG 59.785 57.895 0.00 0.00 44.83 3.16
592 594 3.368822 GCTGCATCAAGCCCAACA 58.631 55.556 0.00 0.00 44.83 3.33
598 600 1.135286 GTTTGGTAGGCTGCATCAAGC 60.135 52.381 4.64 0.00 45.96 4.01
599 601 1.131126 CGTTTGGTAGGCTGCATCAAG 59.869 52.381 4.64 0.00 0.00 3.02
600 602 1.164411 CGTTTGGTAGGCTGCATCAA 58.836 50.000 4.64 0.00 0.00 2.57
601 603 1.305219 GCGTTTGGTAGGCTGCATCA 61.305 55.000 4.64 0.00 34.83 3.07
602 604 1.429423 GCGTTTGGTAGGCTGCATC 59.571 57.895 4.64 0.00 34.83 3.91
603 605 2.398554 CGCGTTTGGTAGGCTGCAT 61.399 57.895 4.64 0.00 35.51 3.96
604 606 3.047280 CGCGTTTGGTAGGCTGCA 61.047 61.111 4.64 0.00 35.51 4.41
605 607 3.023591 GACGCGTTTGGTAGGCTGC 62.024 63.158 15.53 0.00 35.51 5.25
606 608 1.352156 GAGACGCGTTTGGTAGGCTG 61.352 60.000 15.53 0.00 35.51 4.85
607 609 1.080025 GAGACGCGTTTGGTAGGCT 60.080 57.895 15.53 2.07 35.51 4.58
608 610 2.442188 CGAGACGCGTTTGGTAGGC 61.442 63.158 15.53 0.00 34.64 3.93
609 611 1.804326 CCGAGACGCGTTTGGTAGG 60.804 63.158 15.53 7.97 38.67 3.18
610 612 0.168788 TACCGAGACGCGTTTGGTAG 59.831 55.000 25.01 12.01 38.67 3.18
611 613 0.109781 GTACCGAGACGCGTTTGGTA 60.110 55.000 25.01 25.01 38.67 3.25
612 614 1.372128 GTACCGAGACGCGTTTGGT 60.372 57.895 26.65 26.65 38.67 3.67
613 615 1.069378 GAGTACCGAGACGCGTTTGG 61.069 60.000 15.53 18.18 38.67 3.28
614 616 0.109873 AGAGTACCGAGACGCGTTTG 60.110 55.000 15.53 6.24 38.67 2.93
615 617 0.595095 AAGAGTACCGAGACGCGTTT 59.405 50.000 15.53 7.97 38.67 3.60
616 618 0.109873 CAAGAGTACCGAGACGCGTT 60.110 55.000 15.53 2.89 38.67 4.84
617 619 1.233285 ACAAGAGTACCGAGACGCGT 61.233 55.000 13.85 13.85 38.67 6.01
618 620 0.109873 AACAAGAGTACCGAGACGCG 60.110 55.000 3.53 3.53 40.47 6.01
619 621 1.719780 CAAACAAGAGTACCGAGACGC 59.280 52.381 0.00 0.00 0.00 5.19
620 622 2.030540 TCCAAACAAGAGTACCGAGACG 60.031 50.000 0.00 0.00 0.00 4.18
621 623 3.655276 TCCAAACAAGAGTACCGAGAC 57.345 47.619 0.00 0.00 0.00 3.36
622 624 4.159135 GGTATCCAAACAAGAGTACCGAGA 59.841 45.833 0.00 0.00 0.00 4.04
623 625 4.081862 TGGTATCCAAACAAGAGTACCGAG 60.082 45.833 0.00 0.00 35.49 4.63
624 626 3.833650 TGGTATCCAAACAAGAGTACCGA 59.166 43.478 0.00 0.00 35.49 4.69
625 627 3.930848 GTGGTATCCAAACAAGAGTACCG 59.069 47.826 0.00 0.00 34.18 4.02
626 628 4.694037 GTGTGGTATCCAAACAAGAGTACC 59.306 45.833 4.42 0.00 41.21 3.34
627 629 5.857822 GTGTGGTATCCAAACAAGAGTAC 57.142 43.478 4.42 0.00 41.21 2.73
670 673 3.020984 TGTGTTTCTTCCCCTTGTGTTC 58.979 45.455 0.00 0.00 0.00 3.18
688 691 2.198827 TGTGGCCTTTACCTCATGTG 57.801 50.000 3.32 0.00 0.00 3.21
711 714 6.991531 TCCATTCAAATTTTGGAGGAAAACAG 59.008 34.615 9.18 0.00 36.35 3.16
750 753 4.651994 CCAAGATTTCGACGAAATTCCTG 58.348 43.478 30.50 25.17 41.56 3.86
758 761 0.606096 TCTGGCCAAGATTTCGACGA 59.394 50.000 7.01 0.00 0.00 4.20
759 762 0.721718 GTCTGGCCAAGATTTCGACG 59.278 55.000 7.01 0.00 37.23 5.12
760 763 1.808411 TGTCTGGCCAAGATTTCGAC 58.192 50.000 7.01 9.60 37.23 4.20
761 764 2.787473 ATGTCTGGCCAAGATTTCGA 57.213 45.000 7.01 0.00 37.23 3.71
762 765 3.012518 AGAATGTCTGGCCAAGATTTCG 58.987 45.455 7.01 0.00 37.23 3.46
763 766 5.166398 CAAAGAATGTCTGGCCAAGATTTC 58.834 41.667 7.01 13.00 37.23 2.17
764 767 4.590222 ACAAAGAATGTCTGGCCAAGATTT 59.410 37.500 7.01 5.15 37.96 2.17
765 768 4.154942 ACAAAGAATGTCTGGCCAAGATT 58.845 39.130 7.01 8.40 37.96 2.40
766 769 3.771216 ACAAAGAATGTCTGGCCAAGAT 58.229 40.909 7.01 0.00 37.96 2.40
767 770 3.228188 ACAAAGAATGTCTGGCCAAGA 57.772 42.857 7.01 3.54 37.96 3.02
768 771 3.305608 GGAACAAAGAATGTCTGGCCAAG 60.306 47.826 7.01 0.66 42.99 3.61
806 809 7.896811 AGGGTTGAATTTCTGTAGGAAAATTC 58.103 34.615 11.66 11.66 45.56 2.17
809 812 7.669089 AAAGGGTTGAATTTCTGTAGGAAAA 57.331 32.000 0.00 0.00 45.56 2.29
827 832 6.954487 AACAGAGAAAAATCGTTAAAGGGT 57.046 33.333 0.00 0.00 0.00 4.34
828 833 7.422399 TGAAACAGAGAAAAATCGTTAAAGGG 58.578 34.615 0.00 0.00 0.00 3.95
833 838 7.422399 CCCTTTGAAACAGAGAAAAATCGTTA 58.578 34.615 0.00 0.00 0.00 3.18
881 2352 1.577328 CTGTTGTAGCCTGGTTGCCG 61.577 60.000 0.00 0.00 0.00 5.69
909 2380 7.817478 CCAGGGGTTTTTATAGTGACATTTTTC 59.183 37.037 0.00 0.00 0.00 2.29
910 2381 7.291416 ACCAGGGGTTTTTATAGTGACATTTTT 59.709 33.333 0.00 0.00 27.29 1.94
936 2407 1.376683 GGGGCGTACAAGCACATGA 60.377 57.895 0.00 0.00 43.62 3.07
956 2431 0.249911 GGGTCGATAGGTGCATGGAC 60.250 60.000 9.16 9.16 34.08 4.02
993 2470 1.132262 CCGTTCATTCCCATTGTTCCG 59.868 52.381 0.00 0.00 0.00 4.30
994 2471 1.135112 GCCGTTCATTCCCATTGTTCC 60.135 52.381 0.00 0.00 0.00 3.62
995 2472 1.467374 CGCCGTTCATTCCCATTGTTC 60.467 52.381 0.00 0.00 0.00 3.18
996 2473 0.525761 CGCCGTTCATTCCCATTGTT 59.474 50.000 0.00 0.00 0.00 2.83
1083 2560 1.006102 CTCTCCGGCGACAACAACT 60.006 57.895 9.30 0.00 0.00 3.16
1088 2565 2.357034 GTTGCTCTCCGGCGACAA 60.357 61.111 9.30 0.66 43.83 3.18
1091 2568 2.048222 CTTGTTGCTCTCCGGCGA 60.048 61.111 9.30 0.00 34.52 5.54
1677 3178 0.037326 GGAGCTTCATGTCGTGGTCA 60.037 55.000 0.00 0.00 0.00 4.02
1688 3189 2.650116 GCGGACTCCAGGAGCTTCA 61.650 63.158 17.31 0.00 32.04 3.02
1904 3405 1.446792 AGCATCACGTTCCTCTGCG 60.447 57.895 0.00 0.00 37.88 5.18
2033 3534 5.559427 TGCACATCAAATACGTATGCTTT 57.441 34.783 9.24 0.00 32.81 3.51
2034 3535 5.513376 CATGCACATCAAATACGTATGCTT 58.487 37.500 9.24 3.39 32.81 3.91
2089 3590 9.956720 CAACCAAATTGAGGATGAAGTAATATC 57.043 33.333 4.32 0.00 41.23 1.63
2098 3609 3.305267 CGTTGCAACCAAATTGAGGATGA 60.305 43.478 23.42 0.00 41.23 2.92
2103 3614 4.566360 AGAAAACGTTGCAACCAAATTGAG 59.434 37.500 23.42 9.42 41.23 3.02
2158 3957 5.047519 GCTGTGATGGTAGGGTACGTAATAT 60.048 44.000 0.00 0.00 0.00 1.28
2193 3992 5.615289 TGCATTTTTGGGCTTTAGCTTTTA 58.385 33.333 0.00 0.00 41.70 1.52
2215 4016 1.744368 CTGTAGTGGCCAGCTGCTG 60.744 63.158 22.44 22.44 40.92 4.41
2294 4112 6.202954 GTGTATGGATCTAAAGACCAAATCGG 59.797 42.308 0.00 0.00 42.50 4.18
2328 4146 4.872691 CGGATGAGATGGTGGATATAAAGC 59.127 45.833 0.00 0.00 0.00 3.51
2453 4301 3.059257 GTCATGCACACACGAACACATTA 60.059 43.478 0.00 0.00 0.00 1.90
2460 4308 0.532640 AGCTGTCATGCACACACGAA 60.533 50.000 0.00 0.00 34.99 3.85
2474 4322 2.749044 CGAGCCCATTGCAGCTGT 60.749 61.111 16.64 0.00 44.83 4.40
2599 4447 0.107066 TGTCCTGGTACGCCTCGATA 60.107 55.000 0.00 0.00 35.27 2.92
2650 4498 1.738346 CGGAGATGTCATCCTCGGCA 61.738 60.000 9.29 0.00 34.45 5.69
2860 4708 2.507854 CCACGGACGGCCCAGATAT 61.508 63.158 0.00 0.00 34.14 1.63
3028 4876 4.344865 CCACCCCACTTCACCCGG 62.345 72.222 0.00 0.00 0.00 5.73
3079 4927 0.321653 AATCCCTCACCGTGAACTGC 60.322 55.000 2.19 0.00 0.00 4.40
3081 4929 2.951229 AAAATCCCTCACCGTGAACT 57.049 45.000 2.19 0.00 0.00 3.01
3158 5006 3.007940 CAGACTCCATGACACCACCTTAA 59.992 47.826 0.00 0.00 0.00 1.85
3187 5035 8.017418 TGGTTCCATTTTTCAAGTTTATCAGT 57.983 30.769 0.00 0.00 0.00 3.41
3438 5289 3.325870 TGCGACAAGTAATTCAGGACAG 58.674 45.455 0.00 0.00 0.00 3.51
3444 5295 9.249457 CTATCTATTTCTGCGACAAGTAATTCA 57.751 33.333 0.00 0.00 0.00 2.57
3498 5361 2.030562 CGTGCCCTCGGTTCTTGT 59.969 61.111 0.00 0.00 0.00 3.16
3499 5362 1.566018 GAACGTGCCCTCGGTTCTTG 61.566 60.000 0.00 0.00 34.94 3.02
3500 5363 1.301479 GAACGTGCCCTCGGTTCTT 60.301 57.895 0.00 0.00 34.94 2.52
3501 5364 2.342648 GAACGTGCCCTCGGTTCT 59.657 61.111 0.00 0.00 34.94 3.01
3502 5365 2.027625 CTGAACGTGCCCTCGGTTC 61.028 63.158 0.00 0.00 34.94 3.62
3503 5366 2.030562 CTGAACGTGCCCTCGGTT 59.969 61.111 0.00 0.00 34.94 4.44
3504 5367 4.681978 GCTGAACGTGCCCTCGGT 62.682 66.667 0.00 0.00 34.94 4.69
3505 5368 2.501223 TAAGCTGAACGTGCCCTCGG 62.501 60.000 0.00 0.00 34.94 4.63
3506 5369 0.669318 TTAAGCTGAACGTGCCCTCG 60.669 55.000 0.00 0.00 0.00 4.63
3507 5370 1.739067 ATTAAGCTGAACGTGCCCTC 58.261 50.000 0.00 0.00 0.00 4.30
3508 5371 2.200373 AATTAAGCTGAACGTGCCCT 57.800 45.000 0.00 0.00 0.00 5.19
3658 5521 5.239525 ACACCAGCTCTGAAAGTGTATTTTC 59.760 40.000 8.09 0.00 39.77 2.29
3668 5531 8.001881 TGTTTTTAATTACACCAGCTCTGAAA 57.998 30.769 0.00 0.00 0.00 2.69
3741 5605 2.851263 ATTGCAGGTCTTCGGTTACA 57.149 45.000 0.00 0.00 0.00 2.41
3988 8455 4.022676 TGAAGAATTTTTGAACTACCCCGC 60.023 41.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.