Multiple sequence alignment - TraesCS6A01G342800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G342800 chr6A 100.000 9696 0 0 1 9696 575293288 575302983 0.000000e+00 17906.0
1 TraesCS6A01G342800 chr6A 92.553 94 5 2 6613 6705 263886860 263886952 6.110000e-27 134.0
2 TraesCS6A01G342800 chr6A 90.566 53 4 1 9416 9467 608624032 608623980 1.750000e-07 69.4
3 TraesCS6A01G342800 chr6A 93.023 43 2 1 9426 9467 121650335 121650377 2.920000e-05 62.1
4 TraesCS6A01G342800 chr6B 96.703 5642 132 31 1094 6708 648084538 648090152 0.000000e+00 9339.0
5 TraesCS6A01G342800 chr6B 95.797 2403 66 18 6709 9091 648090492 648092879 0.000000e+00 3845.0
6 TraesCS6A01G342800 chr6B 89.663 1364 66 22 7993 9316 648126647 648127975 0.000000e+00 1668.0
7 TraesCS6A01G342800 chr6B 87.984 1032 88 17 7 1015 648083119 648084137 0.000000e+00 1186.0
8 TraesCS6A01G342800 chr6B 97.321 336 9 0 7602 7937 648126312 648126647 1.090000e-158 571.0
9 TraesCS6A01G342800 chr6B 89.268 205 18 3 768 972 607677953 607678153 4.490000e-63 254.0
10 TraesCS6A01G342800 chr6B 79.856 278 17 13 9067 9321 648093154 648093415 6.020000e-37 167.0
11 TraesCS6A01G342800 chr6B 91.045 67 4 2 9346 9411 288784643 288784578 1.340000e-13 89.8
12 TraesCS6A01G342800 chr6B 96.970 33 1 0 6519 6551 645552781 645552749 1.000000e-03 56.5
13 TraesCS6A01G342800 chr6B 94.444 36 1 1 6703 6738 73440950 73440984 5.000000e-03 54.7
14 TraesCS6A01G342800 chr6D 96.644 5125 117 28 846 5948 429836321 429841412 0.000000e+00 8460.0
15 TraesCS6A01G342800 chr6D 94.520 2646 88 20 6709 9321 429842513 429845134 0.000000e+00 4030.0
16 TraesCS6A01G342800 chr6D 97.757 535 12 0 6004 6538 429841416 429841950 0.000000e+00 922.0
17 TraesCS6A01G342800 chr6D 87.768 793 56 15 1 776 429835330 429836098 0.000000e+00 889.0
18 TraesCS6A01G342800 chr6D 97.409 193 5 0 6516 6708 429841982 429842174 7.260000e-86 329.0
19 TraesCS6A01G342800 chr6D 92.754 69 4 1 9346 9413 81224599 81224531 2.230000e-16 99.0
20 TraesCS6A01G342800 chr6D 100.000 30 0 0 6709 6738 315935538 315935509 1.000000e-03 56.5
21 TraesCS6A01G342800 chr7B 96.748 123 4 0 9574 9696 46905866 46905988 1.280000e-48 206.0
22 TraesCS6A01G342800 chr7B 97.222 36 0 1 6709 6743 526425632 526425597 1.050000e-04 60.2
23 TraesCS6A01G342800 chrUn 95.968 124 5 0 9573 9696 75253086 75252963 1.650000e-47 202.0
24 TraesCS6A01G342800 chrUn 92.143 140 10 1 9557 9696 103517631 103517769 7.680000e-46 196.0
25 TraesCS6A01G342800 chr4A 96.000 125 4 1 9573 9696 223857834 223857958 1.650000e-47 202.0
26 TraesCS6A01G342800 chr4A 91.071 56 4 1 9411 9465 64954413 64954468 3.760000e-09 75.0
27 TraesCS6A01G342800 chr4A 95.556 45 1 1 6515 6558 97531477 97531433 4.860000e-08 71.3
28 TraesCS6A01G342800 chr4A 100.000 32 0 0 7760 7791 710197710 710197741 1.050000e-04 60.2
29 TraesCS6A01G342800 chr2D 94.656 131 6 1 9566 9696 516381787 516381916 1.650000e-47 202.0
30 TraesCS6A01G342800 chr2D 92.391 92 7 0 6615 6706 180881027 180881118 2.200000e-26 132.0
31 TraesCS6A01G342800 chr2D 92.647 68 4 1 9347 9413 188588150 188588083 8.020000e-16 97.1
32 TraesCS6A01G342800 chr2B 95.968 124 5 0 9573 9696 10384213 10384090 1.650000e-47 202.0
33 TraesCS6A01G342800 chr2B 95.276 127 6 0 9570 9696 565052624 565052750 1.650000e-47 202.0
34 TraesCS6A01G342800 chr2B 90.625 96 9 0 6615 6710 237348015 237348110 2.840000e-25 128.0
35 TraesCS6A01G342800 chr2B 87.719 57 6 1 9410 9465 796526551 796526607 2.260000e-06 65.8
36 TraesCS6A01G342800 chr2B 92.857 42 2 1 9408 9448 712832414 712832455 1.050000e-04 60.2
37 TraesCS6A01G342800 chr1B 95.968 124 5 0 9573 9696 409879936 409879813 1.650000e-47 202.0
38 TraesCS6A01G342800 chr1B 90.000 70 6 1 9345 9413 476018790 476018859 1.340000e-13 89.8
39 TraesCS6A01G342800 chr1B 91.045 67 4 2 9346 9411 642426033 642426098 1.340000e-13 89.8
40 TraesCS6A01G342800 chr1B 91.667 60 4 1 9410 9468 546846805 546846864 2.240000e-11 82.4
41 TraesCS6A01G342800 chr4B 92.701 137 7 3 9561 9696 334108072 334107938 2.760000e-45 195.0
42 TraesCS6A01G342800 chr5B 91.919 99 7 1 6613 6710 208523457 208523359 4.720000e-28 137.0
43 TraesCS6A01G342800 chr2A 91.667 96 8 0 6615 6710 195313134 195313229 6.110000e-27 134.0
44 TraesCS6A01G342800 chr5D 91.089 101 4 5 6613 6710 204323390 204323292 2.200000e-26 132.0
45 TraesCS6A01G342800 chr5D 94.737 38 2 0 6703 6740 264066075 264066112 1.050000e-04 60.2
46 TraesCS6A01G342800 chr5A 93.258 89 6 0 6617 6705 130540666 130540578 2.200000e-26 132.0
47 TraesCS6A01G342800 chr5A 91.803 61 4 1 9408 9467 367849258 367849198 6.240000e-12 84.2
48 TraesCS6A01G342800 chr5A 89.362 47 1 3 6519 6561 496328389 496328343 1.000000e-03 56.5
49 TraesCS6A01G342800 chr5A 96.970 33 1 0 6519 6551 666152461 666152493 1.000000e-03 56.5
50 TraesCS6A01G342800 chr5A 92.500 40 0 2 6525 6561 664882624 664882585 5.000000e-03 54.7
51 TraesCS6A01G342800 chr1D 82.963 135 9 6 9345 9465 354458826 354458960 1.030000e-19 110.0
52 TraesCS6A01G342800 chr1A 94.203 69 3 1 9346 9413 506544446 506544514 4.790000e-18 104.0
53 TraesCS6A01G342800 chr3B 92.537 67 3 2 9346 9411 483399622 483399687 2.880000e-15 95.3
54 TraesCS6A01G342800 chr3A 90.000 70 5 2 9345 9413 265542707 265542775 1.340000e-13 89.8
55 TraesCS6A01G342800 chr7D 95.238 42 2 0 6510 6551 433886474 433886433 6.280000e-07 67.6
56 TraesCS6A01G342800 chr7D 97.222 36 0 1 6709 6743 497967273 497967238 1.050000e-04 60.2
57 TraesCS6A01G342800 chr3D 97.297 37 0 1 6709 6745 94215371 94215336 2.920000e-05 62.1
58 TraesCS6A01G342800 chr7A 97.222 36 0 1 6709 6743 563503297 563503262 1.050000e-04 60.2
59 TraesCS6A01G342800 chr7A 84.746 59 8 1 9410 9467 699769587 699769645 3.780000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G342800 chr6A 575293288 575302983 9695 False 17906.00 17906 100.0000 1 9696 1 chr6A.!!$F3 9695
1 TraesCS6A01G342800 chr6B 648083119 648093415 10296 False 3634.25 9339 90.0850 7 9321 4 chr6B.!!$F3 9314
2 TraesCS6A01G342800 chr6B 648126312 648127975 1663 False 1119.50 1668 93.4920 7602 9316 2 chr6B.!!$F4 1714
3 TraesCS6A01G342800 chr6D 429835330 429845134 9804 False 2926.00 8460 94.8196 1 9321 5 chr6D.!!$F1 9320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 1092 1.040893 CCGGGGATTTAGGGTTTGGC 61.041 60.000 0.00 0.00 0.00 4.52 F
1065 1251 0.463833 TCGACCTCTATGAGAGCGCA 60.464 55.000 11.47 0.00 40.98 6.09 F
1325 1835 1.026182 TGCCGTAGCTTTGATGCCAG 61.026 55.000 0.00 0.00 40.80 4.85 F
1976 2492 0.392461 TCCTGTGTCGGCTTTATGGC 60.392 55.000 0.00 0.00 37.94 4.40 F
2111 2627 1.305201 CTGCCACCTGTACGTTGTTT 58.695 50.000 0.00 0.00 0.00 2.83 F
3011 3528 2.485814 GAGAACAGGTTTGTGCATCTCC 59.514 50.000 0.00 0.00 37.67 3.71 F
3749 4279 5.247862 TGCTATATAATGCCCACAGATGTG 58.752 41.667 5.97 5.97 45.23 3.21 F
3894 4424 5.070446 ACCCCCACTTTCTTTCTTCATTTTC 59.930 40.000 0.00 0.00 0.00 2.29 F
5593 6125 1.143073 CTTGTAATGGTAGGGAGGGGC 59.857 57.143 0.00 0.00 0.00 5.80 F
5727 6263 1.035932 CCCAAGCTGCCAGAGGAATG 61.036 60.000 0.00 0.00 0.00 2.67 F
6906 7839 4.022416 TGTTACAAATTAAGCACAGCCTGG 60.022 41.667 0.00 0.00 0.00 4.45 F
7949 8886 3.256383 TGCTCATTTGCTGCATGTACTTT 59.744 39.130 1.84 0.00 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 2266 0.890542 TTGCAGCCGTCTTCAAGCAT 60.891 50.000 0.00 0.0 0.00 3.79 R
1872 2388 1.234615 ACGCACATCCGAAAACCAGG 61.235 55.000 0.00 0.0 0.00 4.45 R
2360 2876 2.954684 CGGCCAGCAGGACCTTACA 61.955 63.158 2.24 0.0 41.31 2.41 R
3430 3954 5.064071 GTGAGCTTGCTACTAGGAAATGAAC 59.936 44.000 0.00 0.0 0.00 3.18 R
3780 4310 6.723052 CCTAATTCCTAATGCCTCCATTTCAT 59.277 38.462 0.00 0.0 41.68 2.57 R
3895 4425 9.231297 CTATGTGATTATGTTATAAACAGGGGG 57.769 37.037 0.00 0.0 45.95 5.40 R
5337 5869 4.793071 CAACATTTGTACGATCCAAGCAA 58.207 39.130 0.00 0.0 0.00 3.91 R
5727 6263 4.878397 AGTTGCTATTATGTGGAACTGCTC 59.122 41.667 6.26 0.0 41.89 4.26 R
7408 8344 4.563976 GCAGTCAACAATTCATTATGGCAC 59.436 41.667 0.00 0.0 0.00 5.01 R
7664 8600 7.544915 GCAGTAGGTTTTAGAGACGAATAAAGT 59.455 37.037 0.00 0.0 0.00 2.66 R
8529 9484 1.069204 ACGCATATCTGTGTAGCCTGG 59.931 52.381 0.00 0.0 44.13 4.45 R
9513 10801 0.100503 GTGTGCGTTTTGGCTGAGTT 59.899 50.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.703379 ATTCCTTCCCTCAATAGAGCAG 57.297 45.455 0.00 0.00 40.68 4.24
43 44 2.356535 CCCTCAATAGAGCAGCCAAGTT 60.357 50.000 0.00 0.00 40.68 2.66
85 86 4.067944 TGCCCAAATAAAACCTACCCAT 57.932 40.909 0.00 0.00 0.00 4.00
92 93 7.454225 CCAAATAAAACCTACCCATTTTTCCA 58.546 34.615 0.00 0.00 30.80 3.53
99 101 4.010349 CCTACCCATTTTTCCACTGAGAC 58.990 47.826 0.00 0.00 0.00 3.36
237 243 5.120519 CCTCTATCTATCGGTTAGACGTGAC 59.879 48.000 0.00 0.00 39.75 3.67
257 263 6.852853 CGTGACATGCTATAAAATTGTCATCC 59.147 38.462 7.25 0.00 45.78 3.51
259 265 7.859377 GTGACATGCTATAAAATTGTCATCCAG 59.141 37.037 7.25 0.00 45.78 3.86
311 317 5.948742 TTGAAAGTTTCAAATCCAACCCT 57.051 34.783 25.15 0.00 45.94 4.34
336 342 3.391296 TCTCCCTCTCTAGCTCTCTCTTC 59.609 52.174 0.00 0.00 0.00 2.87
351 357 4.755629 TCTCTCTTCCACGATAATAGACGG 59.244 45.833 0.00 0.00 0.00 4.79
354 360 5.359009 TCTCTTCCACGATAATAGACGGTTT 59.641 40.000 0.00 0.00 0.00 3.27
393 399 5.447818 CGCAAAATAGAAAGACATCAGTCCC 60.448 44.000 0.00 0.00 46.15 4.46
406 412 1.556911 TCAGTCCCTTCCTCAGCAATC 59.443 52.381 0.00 0.00 0.00 2.67
465 471 9.887406 CGGCGAAATAAAACCTATAAACATTAT 57.113 29.630 0.00 0.00 0.00 1.28
485 491 8.338259 ACATTATCAGAAGACGCATTTTGATAC 58.662 33.333 10.95 0.00 29.93 2.24
510 516 9.374838 ACACGTATAACCTTTTACTTATTCAGG 57.625 33.333 0.00 0.00 0.00 3.86
531 537 8.045720 TCAGGGCCTGACTAGAATTTTATTAT 57.954 34.615 32.01 0.00 35.39 1.28
534 540 8.673251 AGGGCCTGACTAGAATTTTATTATCAT 58.327 33.333 4.50 0.00 0.00 2.45
535 541 8.951243 GGGCCTGACTAGAATTTTATTATCATC 58.049 37.037 0.84 0.00 0.00 2.92
536 542 8.951243 GGCCTGACTAGAATTTTATTATCATCC 58.049 37.037 0.00 0.00 0.00 3.51
537 543 9.732130 GCCTGACTAGAATTTTATTATCATCCT 57.268 33.333 0.00 0.00 0.00 3.24
572 578 3.961480 AACAAGAAAAGGGCATTAGGC 57.039 42.857 0.00 0.00 43.74 3.93
573 579 3.175438 ACAAGAAAAGGGCATTAGGCT 57.825 42.857 0.00 0.00 44.01 4.58
574 580 4.316025 ACAAGAAAAGGGCATTAGGCTA 57.684 40.909 0.00 0.00 44.01 3.93
575 581 4.871822 ACAAGAAAAGGGCATTAGGCTAT 58.128 39.130 0.00 0.00 44.01 2.97
576 582 4.646492 ACAAGAAAAGGGCATTAGGCTATG 59.354 41.667 0.00 0.00 44.01 2.23
577 583 4.526438 AGAAAAGGGCATTAGGCTATGT 57.474 40.909 0.00 0.00 44.01 2.29
578 584 5.646692 AGAAAAGGGCATTAGGCTATGTA 57.353 39.130 0.00 0.00 44.01 2.29
912 1089 1.308666 GGCCGGGGATTTAGGGTTT 59.691 57.895 2.18 0.00 0.00 3.27
915 1092 1.040893 CCGGGGATTTAGGGTTTGGC 61.041 60.000 0.00 0.00 0.00 4.52
1050 1236 2.047844 TGCCTGCAGAGCTTCGAC 60.048 61.111 17.39 0.00 0.00 4.20
1065 1251 0.463833 TCGACCTCTATGAGAGCGCA 60.464 55.000 11.47 0.00 40.98 6.09
1164 1663 2.125832 GCTGCCGTAGCGTGGTTA 60.126 61.111 0.00 0.00 43.63 2.85
1178 1687 2.499685 GTTAGGGAGCGATGCGGT 59.500 61.111 0.00 0.00 41.33 5.68
1325 1835 1.026182 TGCCGTAGCTTTGATGCCAG 61.026 55.000 0.00 0.00 40.80 4.85
1460 1973 6.737750 CGAAATGGTTTTTGCAAGATATTTGC 59.262 34.615 0.00 12.76 45.11 3.68
1534 2049 4.998672 TGGGTTTCTATTTGTGGTTACTCG 59.001 41.667 0.00 0.00 0.00 4.18
1570 2085 6.850555 GCATAGAGCTCTTTGTTTGAGAATT 58.149 36.000 27.91 2.30 41.15 2.17
1620 2135 2.159476 CGGGCTTGATGTGTTTGAGATG 60.159 50.000 0.00 0.00 0.00 2.90
1625 2140 4.919754 GCTTGATGTGTTTGAGATGGTTTC 59.080 41.667 0.00 0.00 0.00 2.78
1660 2175 3.139397 TCAAACTTTCCTGCCCCTCTTTA 59.861 43.478 0.00 0.00 0.00 1.85
1673 2188 1.634702 CTCTTTACTCTGCTGCCGAC 58.365 55.000 0.00 0.00 0.00 4.79
1682 2197 1.416813 CTGCTGCCGACGAAGACATC 61.417 60.000 0.00 0.00 0.00 3.06
1704 2219 1.105167 CCACGTCCTATACTCCCGCA 61.105 60.000 0.00 0.00 0.00 5.69
1749 2264 2.034221 GCCCCCTGTGGTTGTCTC 59.966 66.667 0.00 0.00 0.00 3.36
1750 2265 2.347490 CCCCCTGTGGTTGTCTCG 59.653 66.667 0.00 0.00 0.00 4.04
1751 2266 2.214216 CCCCCTGTGGTTGTCTCGA 61.214 63.158 0.00 0.00 0.00 4.04
1752 2267 1.553690 CCCCCTGTGGTTGTCTCGAT 61.554 60.000 0.00 0.00 0.00 3.59
1872 2388 6.330278 GGTTACCTGAAAAATAATGGACAGC 58.670 40.000 0.00 0.00 0.00 4.40
1948 2464 2.358003 GCGTGCAGAACTCTGGCT 60.358 61.111 8.74 0.00 43.94 4.75
1976 2492 0.392461 TCCTGTGTCGGCTTTATGGC 60.392 55.000 0.00 0.00 37.94 4.40
2028 2544 2.101582 GCGAGAGATTAAGCTTCTCCCA 59.898 50.000 0.00 0.00 40.43 4.37
2111 2627 1.305201 CTGCCACCTGTACGTTGTTT 58.695 50.000 0.00 0.00 0.00 2.83
2680 3196 4.199432 AGCTGAGTATCTTGAACTGGTG 57.801 45.455 0.00 0.00 34.92 4.17
3011 3528 2.485814 GAGAACAGGTTTGTGCATCTCC 59.514 50.000 0.00 0.00 37.67 3.71
3090 3613 7.315142 TGGAGCAGAATTATTGTTGATGAAAC 58.685 34.615 0.00 0.00 39.41 2.78
3356 3880 5.640189 TCCTTTTGTACTTCCTAGAGACG 57.360 43.478 0.00 0.00 0.00 4.18
3423 3947 7.436118 CGAAACATGAATCCCAATATTCCATT 58.564 34.615 0.00 0.00 35.40 3.16
3424 3948 8.575589 CGAAACATGAATCCCAATATTCCATTA 58.424 33.333 0.00 0.00 35.40 1.90
3425 3949 9.696917 GAAACATGAATCCCAATATTCCATTAC 57.303 33.333 0.00 0.00 35.40 1.89
3567 4097 7.390027 TGAGAGGTCTTCAGAAGAATTTAAGG 58.610 38.462 14.77 0.00 39.67 2.69
3749 4279 5.247862 TGCTATATAATGCCCACAGATGTG 58.752 41.667 5.97 5.97 45.23 3.21
3798 4328 6.697019 CGTTTTTATGAAATGGAGGCATTAGG 59.303 38.462 0.00 0.00 0.00 2.69
3799 4329 7.416213 CGTTTTTATGAAATGGAGGCATTAGGA 60.416 37.037 0.00 0.00 0.00 2.94
3800 4330 7.969690 TTTTATGAAATGGAGGCATTAGGAA 57.030 32.000 0.00 0.00 0.00 3.36
3801 4331 8.551682 TTTTATGAAATGGAGGCATTAGGAAT 57.448 30.769 0.00 0.00 0.00 3.01
3802 4332 8.551682 TTTATGAAATGGAGGCATTAGGAATT 57.448 30.769 0.00 0.00 0.00 2.17
3803 4333 9.653516 TTTATGAAATGGAGGCATTAGGAATTA 57.346 29.630 0.00 0.00 0.00 1.40
3804 4334 7.771927 ATGAAATGGAGGCATTAGGAATTAG 57.228 36.000 0.00 0.00 0.00 1.73
3894 4424 5.070446 ACCCCCACTTTCTTTCTTCATTTTC 59.930 40.000 0.00 0.00 0.00 2.29
3895 4425 5.511373 CCCCCACTTTCTTTCTTCATTTTCC 60.511 44.000 0.00 0.00 0.00 3.13
5055 5587 8.528044 TTACTATTTCCCCAATATGGTTTGTC 57.472 34.615 0.00 0.00 35.17 3.18
5593 6125 1.143073 CTTGTAATGGTAGGGAGGGGC 59.857 57.143 0.00 0.00 0.00 5.80
5621 6153 9.503427 CAAGTCCTTTTTAGTTTACAGTTTCAG 57.497 33.333 0.00 0.00 0.00 3.02
5724 6260 2.203983 TCCCAAGCTGCCAGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
5727 6263 1.035932 CCCAAGCTGCCAGAGGAATG 61.036 60.000 0.00 0.00 0.00 2.67
6145 6685 6.307318 CACTGCTCTAATTTTCTTTGATGTGC 59.693 38.462 0.00 0.00 0.00 4.57
6362 6902 4.220572 GACTCACGTCAAGTCTGTTCTAC 58.779 47.826 16.71 0.00 40.03 2.59
6477 7017 5.777732 TCTTTTGGGCATACAAGGTAAACAT 59.222 36.000 0.00 0.00 0.00 2.71
6625 7219 5.091552 GTGGAACTGGATATATACTCCCCA 58.908 45.833 0.00 0.00 31.32 4.96
6688 7282 6.039047 GGACTACATACGGACTGAAATGAGTA 59.961 42.308 7.93 0.00 0.00 2.59
6773 7706 5.170021 GCTTCACATGTATGCAATCCAAAA 58.830 37.500 0.00 0.00 0.00 2.44
6906 7839 4.022416 TGTTACAAATTAAGCACAGCCTGG 60.022 41.667 0.00 0.00 0.00 4.45
6948 7881 5.161358 TCATATATTCGAACTAGCGCAAGG 58.839 41.667 11.47 0.74 38.28 3.61
7140 8076 7.874016 ACACTGAATTATGTGCACATTTTCAAT 59.126 29.630 33.91 28.76 37.10 2.57
7254 8190 6.307155 CCAGTTGTTACAATTGAAGATCGTC 58.693 40.000 19.72 1.20 0.00 4.20
7408 8344 4.774726 ACATCTATATCTGGCTGTAGTGGG 59.225 45.833 0.00 0.00 0.00 4.61
7494 8430 4.908601 TGGAGTCTGATTTGGTGTATGT 57.091 40.909 0.00 0.00 0.00 2.29
7592 8528 8.060931 ACATTTGGTTTTATTTTTGGTTGCTT 57.939 26.923 0.00 0.00 0.00 3.91
7664 8600 6.516527 GCAGGTTCATCCTTTATGTTTGACAA 60.517 38.462 0.00 0.00 45.67 3.18
7903 8839 6.708285 ACATCGACCCTTTAACTTGACTAAT 58.292 36.000 0.00 0.00 0.00 1.73
7904 8840 7.844009 ACATCGACCCTTTAACTTGACTAATA 58.156 34.615 0.00 0.00 0.00 0.98
7905 8841 8.483758 ACATCGACCCTTTAACTTGACTAATAT 58.516 33.333 0.00 0.00 0.00 1.28
7906 8842 8.979574 CATCGACCCTTTAACTTGACTAATATC 58.020 37.037 0.00 0.00 0.00 1.63
7908 8844 6.420008 CGACCCTTTAACTTGACTAATATCCG 59.580 42.308 0.00 0.00 0.00 4.18
7949 8886 3.256383 TGCTCATTTGCTGCATGTACTTT 59.744 39.130 1.84 0.00 0.00 2.66
7950 8887 4.240096 GCTCATTTGCTGCATGTACTTTT 58.760 39.130 1.84 0.00 0.00 2.27
7975 8912 5.897050 TGTTTGTGAACATAAAGGGAACAC 58.103 37.500 0.00 0.00 40.71 3.32
7976 8913 5.419155 TGTTTGTGAACATAAAGGGAACACA 59.581 36.000 0.00 0.00 40.71 3.72
7977 8914 5.508200 TTGTGAACATAAAGGGAACACAC 57.492 39.130 0.00 0.00 36.70 3.82
8267 9222 5.000012 ACTGCTCTAAAGATACCGACAAG 58.000 43.478 0.00 0.00 0.00 3.16
8290 9245 6.750148 AGACAATATTCTTCTCACCGTATCC 58.250 40.000 0.00 0.00 0.00 2.59
8293 9248 6.098409 ACAATATTCTTCTCACCGTATCCTGT 59.902 38.462 0.00 0.00 0.00 4.00
8390 9345 6.926272 GTGACATAATTCCTGAGACTATGGTC 59.074 42.308 0.00 0.00 42.41 4.02
8449 9404 9.985318 CAGATTTGCATTTTGTTCTTGTTTTTA 57.015 25.926 0.00 0.00 0.00 1.52
8456 9411 9.650371 GCATTTTGTTCTTGTTTTTAGATTTCC 57.350 29.630 0.00 0.00 0.00 3.13
8458 9413 8.725405 TTTTGTTCTTGTTTTTAGATTTCCCC 57.275 30.769 0.00 0.00 0.00 4.81
8459 9414 6.079424 TGTTCTTGTTTTTAGATTTCCCCG 57.921 37.500 0.00 0.00 0.00 5.73
8460 9415 4.776795 TCTTGTTTTTAGATTTCCCCGC 57.223 40.909 0.00 0.00 0.00 6.13
8461 9416 4.145807 TCTTGTTTTTAGATTTCCCCGCA 58.854 39.130 0.00 0.00 0.00 5.69
8462 9417 4.585162 TCTTGTTTTTAGATTTCCCCGCAA 59.415 37.500 0.00 0.00 0.00 4.85
8463 9418 4.939052 TGTTTTTAGATTTCCCCGCAAA 57.061 36.364 0.00 0.00 0.00 3.68
8464 9419 5.277857 TGTTTTTAGATTTCCCCGCAAAA 57.722 34.783 0.00 0.00 0.00 2.44
8465 9420 5.671493 TGTTTTTAGATTTCCCCGCAAAAA 58.329 33.333 0.00 0.00 0.00 1.94
8529 9484 8.029642 AGTACTAGTGTGTTGATTTACAATGC 57.970 34.615 5.39 0.00 40.76 3.56
8678 9633 1.448922 GCAGTGGGTTAACAACGGCA 61.449 55.000 22.03 0.00 0.00 5.69
8856 9811 3.551846 GTGTCATACCATCCCGGATTTT 58.448 45.455 0.73 0.00 38.63 1.82
8942 9897 6.534634 ACTCCTTTAGTGAAGCATACAGTTT 58.465 36.000 0.00 0.00 36.93 2.66
9075 10036 8.939932 TGTGTATTGTCCATGGGAGTATAAATA 58.060 33.333 13.02 3.70 29.39 1.40
9135 10397 2.978978 TGGTTGAGGTGGATCAGAAAGA 59.021 45.455 0.00 0.00 0.00 2.52
9173 10452 5.005740 TGGTTGAGATCTTGTCTTGAATGG 58.994 41.667 0.00 0.00 37.29 3.16
9225 10504 3.730215 TTTGCATCTAGGCCCTGTTTA 57.270 42.857 0.00 0.00 0.00 2.01
9321 10609 8.445275 TTTAAAGTCTTGCTCATGTGAACTAA 57.555 30.769 0.00 0.00 0.00 2.24
9322 10610 6.942532 AAAGTCTTGCTCATGTGAACTAAA 57.057 33.333 0.00 0.00 0.00 1.85
9323 10611 6.551385 AAGTCTTGCTCATGTGAACTAAAG 57.449 37.500 0.00 0.00 0.00 1.85
9324 10612 5.858381 AGTCTTGCTCATGTGAACTAAAGA 58.142 37.500 0.00 0.00 0.00 2.52
9325 10613 6.291377 AGTCTTGCTCATGTGAACTAAAGAA 58.709 36.000 0.00 0.00 0.00 2.52
9326 10614 6.767902 AGTCTTGCTCATGTGAACTAAAGAAA 59.232 34.615 0.00 0.00 0.00 2.52
9327 10615 7.446625 AGTCTTGCTCATGTGAACTAAAGAAAT 59.553 33.333 0.00 0.00 0.00 2.17
9328 10616 8.721478 GTCTTGCTCATGTGAACTAAAGAAATA 58.279 33.333 0.00 0.00 0.00 1.40
9329 10617 8.721478 TCTTGCTCATGTGAACTAAAGAAATAC 58.279 33.333 0.00 0.00 0.00 1.89
9330 10618 8.621532 TTGCTCATGTGAACTAAAGAAATACT 57.378 30.769 0.00 0.00 0.00 2.12
9331 10619 9.719355 TTGCTCATGTGAACTAAAGAAATACTA 57.281 29.630 0.00 0.00 0.00 1.82
9332 10620 9.890629 TGCTCATGTGAACTAAAGAAATACTAT 57.109 29.630 0.00 0.00 0.00 2.12
9352 10640 7.709149 ACTATAAAAGTGTAACGTACTCCCT 57.291 36.000 0.00 0.00 45.86 4.20
9353 10641 7.766283 ACTATAAAAGTGTAACGTACTCCCTC 58.234 38.462 0.00 0.00 45.86 4.30
9354 10642 6.847421 ATAAAAGTGTAACGTACTCCCTCT 57.153 37.500 0.00 0.00 45.86 3.69
9355 10643 4.516365 AAAGTGTAACGTACTCCCTCTG 57.484 45.455 0.00 0.00 45.86 3.35
9356 10644 1.817447 AGTGTAACGTACTCCCTCTGC 59.183 52.381 0.00 0.00 45.86 4.26
9357 10645 1.542915 GTGTAACGTACTCCCTCTGCA 59.457 52.381 0.00 0.00 0.00 4.41
9358 10646 2.029649 GTGTAACGTACTCCCTCTGCAA 60.030 50.000 0.00 0.00 0.00 4.08
9359 10647 2.629137 TGTAACGTACTCCCTCTGCAAA 59.371 45.455 0.00 0.00 0.00 3.68
9360 10648 2.457366 AACGTACTCCCTCTGCAAAG 57.543 50.000 0.00 0.00 0.00 2.77
9361 10649 1.629043 ACGTACTCCCTCTGCAAAGA 58.371 50.000 0.00 0.00 0.00 2.52
9362 10650 1.968493 ACGTACTCCCTCTGCAAAGAA 59.032 47.619 0.00 0.00 0.00 2.52
9363 10651 2.367567 ACGTACTCCCTCTGCAAAGAAA 59.632 45.455 0.00 0.00 0.00 2.52
9364 10652 3.008049 ACGTACTCCCTCTGCAAAGAAAT 59.992 43.478 0.00 0.00 0.00 2.17
9365 10653 4.222145 ACGTACTCCCTCTGCAAAGAAATA 59.778 41.667 0.00 0.00 0.00 1.40
9366 10654 5.104900 ACGTACTCCCTCTGCAAAGAAATAT 60.105 40.000 0.00 0.00 0.00 1.28
9367 10655 6.097839 ACGTACTCCCTCTGCAAAGAAATATA 59.902 38.462 0.00 0.00 0.00 0.86
9368 10656 6.984474 CGTACTCCCTCTGCAAAGAAATATAA 59.016 38.462 0.00 0.00 0.00 0.98
9369 10657 7.169982 CGTACTCCCTCTGCAAAGAAATATAAG 59.830 40.741 0.00 0.00 0.00 1.73
9370 10658 7.200434 ACTCCCTCTGCAAAGAAATATAAGA 57.800 36.000 0.00 0.00 0.00 2.10
9371 10659 7.278875 ACTCCCTCTGCAAAGAAATATAAGAG 58.721 38.462 0.00 0.00 0.00 2.85
9372 10660 6.058183 TCCCTCTGCAAAGAAATATAAGAGC 58.942 40.000 0.00 0.00 0.00 4.09
9373 10661 5.824624 CCCTCTGCAAAGAAATATAAGAGCA 59.175 40.000 0.00 0.00 0.00 4.26
9374 10662 6.489361 CCCTCTGCAAAGAAATATAAGAGCAT 59.511 38.462 0.00 0.00 0.00 3.79
9375 10663 7.014038 CCCTCTGCAAAGAAATATAAGAGCATT 59.986 37.037 0.00 0.00 0.00 3.56
9376 10664 8.411683 CCTCTGCAAAGAAATATAAGAGCATTT 58.588 33.333 0.00 0.00 0.00 2.32
9476 10764 3.992636 GGAAGTACTCCGTGACTCG 57.007 57.895 0.00 0.00 33.37 4.18
9477 10765 0.179169 GGAAGTACTCCGTGACTCGC 60.179 60.000 0.00 0.00 38.35 5.03
9478 10766 0.520404 GAAGTACTCCGTGACTCGCA 59.480 55.000 0.00 0.00 38.35 5.10
9479 10767 0.956633 AAGTACTCCGTGACTCGCAA 59.043 50.000 0.00 0.00 38.35 4.85
9480 10768 1.174783 AGTACTCCGTGACTCGCAAT 58.825 50.000 0.00 0.00 38.35 3.56
9481 10769 2.362736 AGTACTCCGTGACTCGCAATA 58.637 47.619 0.00 0.00 38.35 1.90
9482 10770 2.355132 AGTACTCCGTGACTCGCAATAG 59.645 50.000 0.00 0.00 38.35 1.73
9483 10771 0.179134 ACTCCGTGACTCGCAATAGC 60.179 55.000 0.00 0.00 38.35 2.97
9484 10772 0.101399 CTCCGTGACTCGCAATAGCT 59.899 55.000 0.00 0.00 39.10 3.32
9485 10773 0.530744 TCCGTGACTCGCAATAGCTT 59.469 50.000 0.00 0.00 39.10 3.74
9486 10774 0.924090 CCGTGACTCGCAATAGCTTC 59.076 55.000 0.00 0.00 39.10 3.86
9487 10775 1.469940 CCGTGACTCGCAATAGCTTCT 60.470 52.381 0.00 0.00 39.10 2.85
9488 10776 1.849219 CGTGACTCGCAATAGCTTCTC 59.151 52.381 0.00 0.00 39.10 2.87
9489 10777 2.478709 CGTGACTCGCAATAGCTTCTCT 60.479 50.000 0.00 0.00 39.10 3.10
9490 10778 2.857152 GTGACTCGCAATAGCTTCTCTG 59.143 50.000 0.00 0.00 39.10 3.35
9491 10779 2.755103 TGACTCGCAATAGCTTCTCTGA 59.245 45.455 0.00 0.00 39.10 3.27
9492 10780 3.112580 GACTCGCAATAGCTTCTCTGAC 58.887 50.000 0.00 0.00 39.10 3.51
9493 10781 2.493675 ACTCGCAATAGCTTCTCTGACA 59.506 45.455 0.00 0.00 39.10 3.58
9494 10782 3.114809 CTCGCAATAGCTTCTCTGACAG 58.885 50.000 0.00 0.00 39.10 3.51
9495 10783 1.592081 CGCAATAGCTTCTCTGACAGC 59.408 52.381 0.00 0.00 39.10 4.40
9496 10784 2.625737 GCAATAGCTTCTCTGACAGCA 58.374 47.619 0.00 0.00 38.61 4.41
9497 10785 3.005554 GCAATAGCTTCTCTGACAGCAA 58.994 45.455 0.00 0.00 38.61 3.91
9498 10786 3.181512 GCAATAGCTTCTCTGACAGCAAC 60.182 47.826 0.00 0.00 38.61 4.17
9499 10787 3.969287 ATAGCTTCTCTGACAGCAACA 57.031 42.857 0.00 0.00 38.61 3.33
9500 10788 2.627515 AGCTTCTCTGACAGCAACAA 57.372 45.000 0.00 0.00 38.61 2.83
9501 10789 2.923121 AGCTTCTCTGACAGCAACAAA 58.077 42.857 0.00 0.00 38.61 2.83
9502 10790 3.484407 AGCTTCTCTGACAGCAACAAAT 58.516 40.909 0.00 0.00 38.61 2.32
9503 10791 3.252701 AGCTTCTCTGACAGCAACAAATG 59.747 43.478 0.00 0.00 38.61 2.32
9528 10816 2.548480 AGTTCTAACTCAGCCAAAACGC 59.452 45.455 0.00 0.00 32.86 4.84
9529 10817 2.248280 TCTAACTCAGCCAAAACGCA 57.752 45.000 0.00 0.00 0.00 5.24
9530 10818 1.871039 TCTAACTCAGCCAAAACGCAC 59.129 47.619 0.00 0.00 0.00 5.34
9531 10819 1.601903 CTAACTCAGCCAAAACGCACA 59.398 47.619 0.00 0.00 0.00 4.57
9532 10820 0.100503 AACTCAGCCAAAACGCACAC 59.899 50.000 0.00 0.00 0.00 3.82
9533 10821 1.029408 ACTCAGCCAAAACGCACACA 61.029 50.000 0.00 0.00 0.00 3.72
9534 10822 0.592247 CTCAGCCAAAACGCACACAC 60.592 55.000 0.00 0.00 0.00 3.82
9535 10823 1.138459 CAGCCAAAACGCACACACA 59.862 52.632 0.00 0.00 0.00 3.72
9536 10824 1.138671 AGCCAAAACGCACACACAC 59.861 52.632 0.00 0.00 0.00 3.82
9537 10825 1.153939 GCCAAAACGCACACACACA 60.154 52.632 0.00 0.00 0.00 3.72
9538 10826 0.527385 GCCAAAACGCACACACACAT 60.527 50.000 0.00 0.00 0.00 3.21
9539 10827 1.198767 CCAAAACGCACACACACATG 58.801 50.000 0.00 0.00 0.00 3.21
9540 10828 0.571661 CAAAACGCACACACACATGC 59.428 50.000 0.00 0.00 38.52 4.06
9541 10829 0.455410 AAAACGCACACACACATGCT 59.545 45.000 0.00 0.00 39.79 3.79
9542 10830 0.248580 AAACGCACACACACATGCTG 60.249 50.000 0.00 0.00 39.79 4.41
9543 10831 1.094650 AACGCACACACACATGCTGA 61.095 50.000 0.00 0.00 39.79 4.26
9544 10832 0.886043 ACGCACACACACATGCTGAT 60.886 50.000 0.00 0.00 39.79 2.90
9545 10833 0.239082 CGCACACACACATGCTGATT 59.761 50.000 0.00 0.00 39.79 2.57
9546 10834 1.335233 CGCACACACACATGCTGATTT 60.335 47.619 0.00 0.00 39.79 2.17
9547 10835 2.322161 GCACACACACATGCTGATTTC 58.678 47.619 0.00 0.00 38.84 2.17
9548 10836 2.030540 GCACACACACATGCTGATTTCT 60.031 45.455 0.00 0.00 38.84 2.52
9549 10837 3.561503 CACACACACATGCTGATTTCTG 58.438 45.455 0.00 0.00 0.00 3.02
9550 10838 3.251487 CACACACACATGCTGATTTCTGA 59.749 43.478 0.00 0.00 0.00 3.27
9551 10839 3.884693 ACACACACATGCTGATTTCTGAA 59.115 39.130 0.00 0.00 0.00 3.02
9552 10840 4.521639 ACACACACATGCTGATTTCTGAAT 59.478 37.500 0.00 0.00 0.00 2.57
9553 10841 4.857037 CACACACATGCTGATTTCTGAATG 59.143 41.667 0.00 4.37 37.02 2.67
9554 10842 4.763279 ACACACATGCTGATTTCTGAATGA 59.237 37.500 11.23 0.00 35.23 2.57
9555 10843 5.106277 ACACACATGCTGATTTCTGAATGAG 60.106 40.000 11.23 6.80 35.23 2.90
9567 10855 9.617523 TGATTTCTGAATGAGCATTTACTATCA 57.382 29.630 0.00 2.35 0.00 2.15
9568 10856 9.875675 GATTTCTGAATGAGCATTTACTATCAC 57.124 33.333 0.00 0.00 0.00 3.06
9569 10857 8.791327 TTTCTGAATGAGCATTTACTATCACA 57.209 30.769 0.00 0.00 0.00 3.58
9570 10858 8.969260 TTCTGAATGAGCATTTACTATCACAT 57.031 30.769 0.00 0.00 0.00 3.21
9571 10859 8.969260 TCTGAATGAGCATTTACTATCACATT 57.031 30.769 0.00 0.00 0.00 2.71
9572 10860 8.833493 TCTGAATGAGCATTTACTATCACATTG 58.167 33.333 0.00 0.00 0.00 2.82
9573 10861 8.510243 TGAATGAGCATTTACTATCACATTGT 57.490 30.769 0.00 0.00 0.00 2.71
9574 10862 9.612066 TGAATGAGCATTTACTATCACATTGTA 57.388 29.630 0.00 0.00 0.00 2.41
9578 10866 9.056005 TGAGCATTTACTATCACATTGTATTCC 57.944 33.333 0.00 0.00 0.00 3.01
9579 10867 8.396272 AGCATTTACTATCACATTGTATTCCC 57.604 34.615 0.00 0.00 0.00 3.97
9580 10868 8.220559 AGCATTTACTATCACATTGTATTCCCT 58.779 33.333 0.00 0.00 0.00 4.20
9581 10869 8.507249 GCATTTACTATCACATTGTATTCCCTC 58.493 37.037 0.00 0.00 0.00 4.30
9582 10870 9.003658 CATTTACTATCACATTGTATTCCCTCC 57.996 37.037 0.00 0.00 0.00 4.30
9583 10871 5.215252 ACTATCACATTGTATTCCCTCCG 57.785 43.478 0.00 0.00 0.00 4.63
9584 10872 4.654262 ACTATCACATTGTATTCCCTCCGT 59.346 41.667 0.00 0.00 0.00 4.69
9585 10873 3.536956 TCACATTGTATTCCCTCCGTC 57.463 47.619 0.00 0.00 0.00 4.79
9586 10874 2.169769 TCACATTGTATTCCCTCCGTCC 59.830 50.000 0.00 0.00 0.00 4.79
9587 10875 1.138266 ACATTGTATTCCCTCCGTCCG 59.862 52.381 0.00 0.00 0.00 4.79
9588 10876 1.411246 CATTGTATTCCCTCCGTCCGA 59.589 52.381 0.00 0.00 0.00 4.55
9589 10877 1.559368 TTGTATTCCCTCCGTCCGAA 58.441 50.000 0.00 0.00 0.00 4.30
9590 10878 1.559368 TGTATTCCCTCCGTCCGAAA 58.441 50.000 0.00 0.00 0.00 3.46
9591 10879 1.901159 TGTATTCCCTCCGTCCGAAAA 59.099 47.619 0.00 0.00 0.00 2.29
9592 10880 2.502538 TGTATTCCCTCCGTCCGAAAAT 59.497 45.455 0.00 0.00 0.00 1.82
9593 10881 3.705579 TGTATTCCCTCCGTCCGAAAATA 59.294 43.478 0.00 0.00 0.00 1.40
9594 10882 2.678471 TTCCCTCCGTCCGAAAATAC 57.322 50.000 0.00 0.00 0.00 1.89
9595 10883 1.856629 TCCCTCCGTCCGAAAATACT 58.143 50.000 0.00 0.00 0.00 2.12
9596 10884 2.181975 TCCCTCCGTCCGAAAATACTT 58.818 47.619 0.00 0.00 0.00 2.24
9597 10885 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
9598 10886 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
9599 10887 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
9600 10888 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
9601 10889 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
9602 10890 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
9603 10891 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
9604 10892 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
9605 10893 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
9606 10894 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
9607 10895 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
9608 10896 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
9609 10897 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
9610 10898 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
9611 10899 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
9619 10907 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
9620 10908 9.709495 CTTGTCATCAAAATGAATAAAAGGGAA 57.291 29.630 0.00 0.00 43.42 3.97
9622 10910 9.656040 TGTCATCAAAATGAATAAAAGGGAATG 57.344 29.630 0.00 0.00 43.42 2.67
9623 10911 9.657419 GTCATCAAAATGAATAAAAGGGAATGT 57.343 29.630 0.00 0.00 43.42 2.71
9632 10920 9.712305 ATGAATAAAAGGGAATGTATCTAGACG 57.288 33.333 0.00 0.00 0.00 4.18
9633 10921 8.701895 TGAATAAAAGGGAATGTATCTAGACGT 58.298 33.333 0.00 0.00 0.00 4.34
9638 10926 9.901172 AAAAGGGAATGTATCTAGACGTATTTT 57.099 29.630 0.00 0.00 0.00 1.82
9641 10929 9.364653 AGGGAATGTATCTAGACGTATTTTAGT 57.635 33.333 0.00 0.00 0.00 2.24
9642 10930 9.978044 GGGAATGTATCTAGACGTATTTTAGTT 57.022 33.333 0.00 0.00 0.00 2.24
9686 10974 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
9687 10975 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
9688 10976 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
9689 10977 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
9690 10978 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
9691 10979 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
9692 10980 5.231702 TGATGACAAGTATTTTCGGACGAA 58.768 37.500 2.62 2.62 0.00 3.85
9693 10981 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
9694 10982 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
9695 10983 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.642430 TGAGGGAAGGAATAATGCATTTTTG 58.358 36.000 18.75 0.00 0.00 2.44
5 6 6.872585 TTGAGGGAAGGAATAATGCATTTT 57.127 33.333 18.75 6.94 0.00 1.82
11 12 6.537355 TGCTCTATTGAGGGAAGGAATAATG 58.463 40.000 6.30 0.00 40.53 1.90
36 37 7.599171 ACACCTAACAACATTATTAACTTGGC 58.401 34.615 0.00 0.00 0.00 4.52
43 44 6.376018 GGGCAAGACACCTAACAACATTATTA 59.624 38.462 0.00 0.00 0.00 0.98
85 86 3.662759 AAGTGGGTCTCAGTGGAAAAA 57.337 42.857 0.00 0.00 0.00 1.94
92 93 1.353091 GGGAGAAAGTGGGTCTCAGT 58.647 55.000 4.01 0.00 42.85 3.41
99 101 6.688073 ACTATATACATGGGAGAAAGTGGG 57.312 41.667 0.00 0.00 0.00 4.61
153 156 6.535150 GCTAAAAGGGCAAGGAATTTTATGTC 59.465 38.462 0.00 0.00 0.00 3.06
158 161 4.972751 TGCTAAAAGGGCAAGGAATTTT 57.027 36.364 0.00 0.00 36.71 1.82
190 196 9.084533 GAGGATATGTCAACTTAATAGAGAGGT 57.915 37.037 0.00 0.00 0.00 3.85
213 219 5.120519 GTCACGTCTAACCGATAGATAGAGG 59.879 48.000 0.00 0.00 42.51 3.69
219 225 3.242969 GCATGTCACGTCTAACCGATAGA 60.243 47.826 0.00 0.00 38.33 1.98
237 243 6.639686 GTGCTGGATGACAATTTTATAGCATG 59.360 38.462 0.00 0.00 40.27 4.06
257 263 5.885881 TGGTTTTGTAAAAGTAGTGTGCTG 58.114 37.500 0.00 0.00 0.00 4.41
259 265 6.735130 AGATGGTTTTGTAAAAGTAGTGTGC 58.265 36.000 0.00 0.00 0.00 4.57
311 317 3.391296 GAGAGAGCTAGAGAGGGAGAGAA 59.609 52.174 0.00 0.00 0.00 2.87
336 342 4.865925 TGTTCAAACCGTCTATTATCGTGG 59.134 41.667 0.00 0.00 0.00 4.94
351 357 1.482531 GCATTGCGCGTGTTCAAAC 59.517 52.632 8.43 0.00 0.00 2.93
393 399 0.179062 CGGAGGGATTGCTGAGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
422 428 4.468689 GCGTGACACCTAGGCCCC 62.469 72.222 9.30 0.00 0.00 5.80
465 471 4.091365 CGTGTATCAAAATGCGTCTTCTGA 59.909 41.667 0.00 0.00 0.00 3.27
485 491 8.823818 CCCTGAATAAGTAAAAGGTTATACGTG 58.176 37.037 0.00 0.00 0.00 4.49
510 516 8.951243 GGATGATAATAAAATTCTAGTCAGGCC 58.049 37.037 0.00 0.00 0.00 5.19
548 554 6.895204 AGCCTAATGCCCTTTTCTTGTTATTA 59.105 34.615 0.00 0.00 42.71 0.98
551 557 4.672899 AGCCTAATGCCCTTTTCTTGTTA 58.327 39.130 0.00 0.00 42.71 2.41
554 560 4.646492 ACATAGCCTAATGCCCTTTTCTTG 59.354 41.667 0.00 0.00 42.71 3.02
555 561 4.871822 ACATAGCCTAATGCCCTTTTCTT 58.128 39.130 0.00 0.00 42.71 2.52
556 562 4.526438 ACATAGCCTAATGCCCTTTTCT 57.474 40.909 0.00 0.00 42.71 2.52
558 564 7.611855 GTGATATACATAGCCTAATGCCCTTTT 59.388 37.037 0.00 0.00 42.71 2.27
560 566 6.630413 CGTGATATACATAGCCTAATGCCCTT 60.630 42.308 0.00 0.00 42.71 3.95
564 570 9.698309 ATATTCGTGATATACATAGCCTAATGC 57.302 33.333 0.00 0.00 41.71 3.56
570 576 9.197694 GATGGAATATTCGTGATATACATAGCC 57.802 37.037 9.32 0.00 32.76 3.93
573 579 9.730420 CGTGATGGAATATTCGTGATATACATA 57.270 33.333 9.32 0.00 32.76 2.29
574 580 7.706607 CCGTGATGGAATATTCGTGATATACAT 59.293 37.037 9.32 4.62 42.00 2.29
575 581 7.033185 CCGTGATGGAATATTCGTGATATACA 58.967 38.462 9.32 0.00 42.00 2.29
576 582 7.033791 ACCGTGATGGAATATTCGTGATATAC 58.966 38.462 9.32 2.13 42.00 1.47
577 583 7.165460 ACCGTGATGGAATATTCGTGATATA 57.835 36.000 9.32 0.00 42.00 0.86
578 584 6.037786 ACCGTGATGGAATATTCGTGATAT 57.962 37.500 9.32 0.00 42.00 1.63
830 866 4.486503 CAGAGCAGCAGCCCTCCC 62.487 72.222 0.00 0.00 43.56 4.30
833 869 1.224039 GAATCAGAGCAGCAGCCCT 59.776 57.895 0.00 0.00 43.56 5.19
837 873 2.523507 CGGCGAATCAGAGCAGCAG 61.524 63.158 0.00 0.00 34.54 4.24
838 874 2.510012 CGGCGAATCAGAGCAGCA 60.510 61.111 0.00 0.00 34.54 4.41
1050 1236 0.109365 CCGATGCGCTCTCATAGAGG 60.109 60.000 9.73 0.00 42.54 3.69
1155 1654 2.058595 ATCGCTCCCTAACCACGCT 61.059 57.895 0.00 0.00 0.00 5.07
1178 1687 0.984230 AAACCAAGCGATCTGGAGGA 59.016 50.000 6.49 0.00 0.00 3.71
1325 1835 0.383231 GGCATGCAAGCACCATAGTC 59.617 55.000 21.36 0.00 35.83 2.59
1429 1941 6.279882 TCTTGCAAAAACCATTTCGAGAATT 58.720 32.000 0.00 0.00 0.00 2.17
1460 1973 1.349026 ACTCCCCTCTCACACACATTG 59.651 52.381 0.00 0.00 0.00 2.82
1501 2014 7.125659 CCACAAATAGAAACCCATAATCCCTTT 59.874 37.037 0.00 0.00 0.00 3.11
1534 2049 2.844946 GCTCTATGCTTTTCCTCTCCC 58.155 52.381 0.00 0.00 38.95 4.30
1561 2076 9.354673 AGTTAGAAAACCATCTCAATTCTCAAA 57.645 29.630 0.00 0.00 36.15 2.69
1570 2085 6.928348 TCCTGTAGTTAGAAAACCATCTCA 57.072 37.500 0.00 0.00 36.15 3.27
1620 2135 2.699954 TGAAGATGCTTCCTCGAAACC 58.300 47.619 4.86 0.00 0.00 3.27
1625 2140 4.378874 GGAAAGTTTGAAGATGCTTCCTCG 60.379 45.833 0.00 0.00 0.00 4.63
1660 2175 2.259818 CTTCGTCGGCAGCAGAGT 59.740 61.111 0.00 0.00 0.00 3.24
1682 2197 0.950116 GGGAGTATAGGACGTGGACG 59.050 60.000 0.00 0.00 46.33 4.79
1704 2219 4.219115 CACAGGTCATGACTATAGGAGGT 58.781 47.826 24.50 9.02 0.00 3.85
1743 2258 2.328473 CGTCTTCAAGCATCGAGACAA 58.672 47.619 9.82 0.00 38.69 3.18
1744 2259 1.402852 CCGTCTTCAAGCATCGAGACA 60.403 52.381 9.82 0.00 38.69 3.41
1749 2264 1.712081 CAGCCGTCTTCAAGCATCG 59.288 57.895 0.00 0.00 0.00 3.84
1750 2265 1.300971 TGCAGCCGTCTTCAAGCATC 61.301 55.000 0.00 0.00 0.00 3.91
1751 2266 0.890542 TTGCAGCCGTCTTCAAGCAT 60.891 50.000 0.00 0.00 0.00 3.79
1752 2267 1.100463 TTTGCAGCCGTCTTCAAGCA 61.100 50.000 0.00 0.00 27.83 3.91
1872 2388 1.234615 ACGCACATCCGAAAACCAGG 61.235 55.000 0.00 0.00 0.00 4.45
1909 2425 4.457257 GCTCAAGAATCATGCCTATAACCC 59.543 45.833 0.00 0.00 0.00 4.11
1948 2464 2.680352 GACACAGGAGGAGGCGGA 60.680 66.667 0.00 0.00 0.00 5.54
1976 2492 1.944676 GCGCACTAGAACGGGATCG 60.945 63.158 0.30 0.00 43.02 3.69
2045 2561 2.366569 GGAGGGGTGGGGAGTACC 60.367 72.222 0.00 0.00 37.48 3.34
2278 2794 4.770531 TCTAACAGAGTTGCTACCTGCTAA 59.229 41.667 13.60 3.18 43.37 3.09
2360 2876 2.954684 CGGCCAGCAGGACCTTACA 61.955 63.158 2.24 0.00 41.31 2.41
3011 3528 6.560253 ACATTTTCAAGCACTGGTAGTAAG 57.440 37.500 0.00 0.00 0.00 2.34
3356 3880 7.806690 TCAATATTGTACTTTGTGAGCTGTTC 58.193 34.615 14.97 0.00 0.00 3.18
3423 3947 9.817809 CTTGCTACTAGGAAATGAACATTAGTA 57.182 33.333 0.37 4.65 0.00 1.82
3424 3948 7.281100 GCTTGCTACTAGGAAATGAACATTAGT 59.719 37.037 0.37 3.81 0.00 2.24
3425 3949 7.497249 AGCTTGCTACTAGGAAATGAACATTAG 59.503 37.037 0.37 0.00 0.00 1.73
3427 3951 6.183347 AGCTTGCTACTAGGAAATGAACATT 58.817 36.000 0.00 0.00 0.00 2.71
3429 3953 5.165961 AGCTTGCTACTAGGAAATGAACA 57.834 39.130 0.00 0.00 0.00 3.18
3430 3954 5.064071 GTGAGCTTGCTACTAGGAAATGAAC 59.936 44.000 0.00 0.00 0.00 3.18
3780 4310 6.723052 CCTAATTCCTAATGCCTCCATTTCAT 59.277 38.462 0.00 0.00 41.68 2.57
3798 4328 8.794335 AATCCAGTCAAAGTTACTCCTAATTC 57.206 34.615 0.00 0.00 0.00 2.17
3803 4333 9.588096 AATTTAAATCCAGTCAAAGTTACTCCT 57.412 29.630 0.10 0.00 0.00 3.69
3895 4425 9.231297 CTATGTGATTATGTTATAAACAGGGGG 57.769 37.037 0.00 0.00 45.95 5.40
5134 5666 8.421002 ACTGTGCCTATAAAGAACAAACAAAAT 58.579 29.630 0.00 0.00 0.00 1.82
5137 5669 6.544197 TGACTGTGCCTATAAAGAACAAACAA 59.456 34.615 0.00 0.00 0.00 2.83
5337 5869 4.793071 CAACATTTGTACGATCCAAGCAA 58.207 39.130 0.00 0.00 0.00 3.91
5593 6125 9.717892 GAAACTGTAAACTAAAAAGGACTTGAG 57.282 33.333 0.00 0.00 0.00 3.02
5621 6153 7.674471 ACTTGCTATTGAAAGAAAGAGTACC 57.326 36.000 1.51 0.00 35.89 3.34
5724 6260 5.439721 TGCTATTATGTGGAACTGCTCATT 58.560 37.500 0.00 0.00 38.04 2.57
5727 6263 4.878397 AGTTGCTATTATGTGGAACTGCTC 59.122 41.667 6.26 0.00 41.89 4.26
6058 6598 6.882610 TGACAAGAAGCAGAACAAATACAT 57.117 33.333 0.00 0.00 0.00 2.29
6145 6685 6.977502 TCGCAGAGAAGATCTTCAAGAAATAG 59.022 38.462 31.79 16.99 41.84 1.73
6362 6902 9.250246 TGGAAGTACCCCAAAAATCTATAAAAG 57.750 33.333 2.37 0.00 38.00 2.27
6477 7017 6.382859 TGGATAAGCAGTAAATAGGTGTCTCA 59.617 38.462 0.00 0.00 0.00 3.27
6688 7282 5.923684 CCCACGCATTTTAGTGTATTTGTTT 59.076 36.000 0.00 0.00 36.69 2.83
6798 7731 7.309744 GGGATTGTCCATCACACAGAAAATTTA 60.310 37.037 0.00 0.00 38.64 1.40
7140 8076 4.633565 GTGTTCCTTTGCACCATTGAAAAA 59.366 37.500 0.00 0.00 29.13 1.94
7254 8190 9.528018 ACATGTTTCATACAAACTAAAACTTGG 57.472 29.630 13.28 1.48 40.89 3.61
7408 8344 4.563976 GCAGTCAACAATTCATTATGGCAC 59.436 41.667 0.00 0.00 0.00 5.01
7494 8430 9.473007 TTTCAATGGGTGATGTAATCTCATTTA 57.527 29.630 0.00 0.00 45.81 1.40
7664 8600 7.544915 GCAGTAGGTTTTAGAGACGAATAAAGT 59.455 37.037 0.00 0.00 0.00 2.66
7765 8701 5.879763 TCAAGATCCAGGAAGTTTGAATCA 58.120 37.500 9.91 0.00 0.00 2.57
7904 8840 9.120538 AGCACAATTTAATGTTATTACTCGGAT 57.879 29.630 0.00 0.00 0.00 4.18
7905 8841 8.500753 AGCACAATTTAATGTTATTACTCGGA 57.499 30.769 0.00 0.00 0.00 4.55
7906 8842 8.394877 TGAGCACAATTTAATGTTATTACTCGG 58.605 33.333 0.00 0.00 0.00 4.63
7975 8912 9.210329 TCAATGATTCCTTCAATTTCATTTGTG 57.790 29.630 0.00 0.00 38.03 3.33
7976 8913 9.953565 ATCAATGATTCCTTCAATTTCATTTGT 57.046 25.926 0.00 0.00 38.03 2.83
8003 8941 8.425577 AGAAGAAAATGATCGTAGTACAATGG 57.574 34.615 0.38 0.00 0.00 3.16
8076 9014 4.019860 AGCAGGACTTCATACTGATGTGTT 60.020 41.667 0.00 0.00 35.29 3.32
8077 9015 3.517100 AGCAGGACTTCATACTGATGTGT 59.483 43.478 0.00 0.00 35.29 3.72
8080 9018 4.370049 CAGAGCAGGACTTCATACTGATG 58.630 47.826 0.00 0.00 34.21 3.07
8173 9124 8.419076 ACAAAAATGTTTCTAATTTGCTTCGT 57.581 26.923 0.00 0.00 35.05 3.85
8190 9141 9.424659 GATGAACAACAAAAGCTAACAAAAATG 57.575 29.630 0.00 0.00 0.00 2.32
8267 9222 6.642950 CAGGATACGGTGAGAAGAATATTGTC 59.357 42.308 0.00 0.00 46.39 3.18
8290 9245 3.548014 CCTGTTCAAGCACGGTTTAACAG 60.548 47.826 20.96 20.96 42.05 3.16
8293 9248 2.614983 GACCTGTTCAAGCACGGTTTAA 59.385 45.455 0.00 0.00 0.00 1.52
8390 9345 2.498167 CGAGGGAGGGAATTTATGCTG 58.502 52.381 0.00 0.00 0.00 4.41
8529 9484 1.069204 ACGCATATCTGTGTAGCCTGG 59.931 52.381 0.00 0.00 44.13 4.45
8678 9633 3.513515 TGGTCTCAAAACCAAAAGCTGTT 59.486 39.130 0.00 0.00 46.26 3.16
8780 9735 3.731431 TCCCACCTCCTAATCTGCTAAA 58.269 45.455 0.00 0.00 0.00 1.85
8856 9811 1.383799 CCTTCAGGTGGAATGGGCA 59.616 57.895 0.00 0.00 34.32 5.36
9041 10002 6.778069 TCCCATGGACAATACACAGTTTTAAA 59.222 34.615 15.22 0.00 0.00 1.52
9097 10359 2.036571 CAGGCATGCACTTCTCGCA 61.037 57.895 21.36 0.00 44.94 5.10
9098 10360 2.758089 CCAGGCATGCACTTCTCGC 61.758 63.158 21.36 0.00 0.00 5.03
9099 10361 0.957395 AACCAGGCATGCACTTCTCG 60.957 55.000 21.36 2.25 0.00 4.04
9100 10362 0.524862 CAACCAGGCATGCACTTCTC 59.475 55.000 21.36 0.00 0.00 2.87
9101 10363 0.111061 TCAACCAGGCATGCACTTCT 59.889 50.000 21.36 3.93 0.00 2.85
9150 10413 5.005740 CCATTCAAGACAAGATCTCAACCA 58.994 41.667 0.00 0.00 36.27 3.67
9173 10452 5.136105 AGTATTCCTTCATTCCTTGCATCC 58.864 41.667 0.00 0.00 0.00 3.51
9225 10504 8.899771 ACAGTACTACAAAAATAGTTTGCAACT 58.100 29.630 0.00 2.51 45.40 3.16
9256 10541 9.895138 AGTACAACTTTTCTAGAAACTTTGGTA 57.105 29.630 26.79 18.82 31.48 3.25
9326 10614 9.413734 AGGGAGTACGTTACACTTTTATAGTAT 57.586 33.333 0.00 0.00 34.56 2.12
9327 10615 8.807948 AGGGAGTACGTTACACTTTTATAGTA 57.192 34.615 0.00 0.00 34.56 1.82
9328 10616 7.613411 AGAGGGAGTACGTTACACTTTTATAGT 59.387 37.037 0.00 0.00 37.68 2.12
9329 10617 7.914346 CAGAGGGAGTACGTTACACTTTTATAG 59.086 40.741 0.00 0.00 0.00 1.31
9330 10618 7.629222 GCAGAGGGAGTACGTTACACTTTTATA 60.629 40.741 0.00 0.00 0.00 0.98
9331 10619 6.628185 CAGAGGGAGTACGTTACACTTTTAT 58.372 40.000 0.00 0.00 0.00 1.40
9332 10620 5.565439 GCAGAGGGAGTACGTTACACTTTTA 60.565 44.000 0.00 0.00 0.00 1.52
9333 10621 4.798593 GCAGAGGGAGTACGTTACACTTTT 60.799 45.833 0.00 0.00 0.00 2.27
9334 10622 3.305881 GCAGAGGGAGTACGTTACACTTT 60.306 47.826 0.00 0.00 0.00 2.66
9335 10623 2.230750 GCAGAGGGAGTACGTTACACTT 59.769 50.000 0.00 0.00 0.00 3.16
9336 10624 1.817447 GCAGAGGGAGTACGTTACACT 59.183 52.381 0.00 0.00 0.00 3.55
9337 10625 1.542915 TGCAGAGGGAGTACGTTACAC 59.457 52.381 0.00 0.00 0.00 2.90
9338 10626 1.913778 TGCAGAGGGAGTACGTTACA 58.086 50.000 0.00 0.00 0.00 2.41
9339 10627 3.057033 TCTTTGCAGAGGGAGTACGTTAC 60.057 47.826 4.15 0.00 0.00 2.50
9340 10628 3.159472 TCTTTGCAGAGGGAGTACGTTA 58.841 45.455 4.15 0.00 0.00 3.18
9341 10629 1.968493 TCTTTGCAGAGGGAGTACGTT 59.032 47.619 4.15 0.00 0.00 3.99
9342 10630 1.629043 TCTTTGCAGAGGGAGTACGT 58.371 50.000 4.15 0.00 0.00 3.57
9343 10631 2.743636 TTCTTTGCAGAGGGAGTACG 57.256 50.000 4.15 0.00 0.00 3.67
9344 10632 8.204836 TCTTATATTTCTTTGCAGAGGGAGTAC 58.795 37.037 4.15 0.00 0.00 2.73
9345 10633 8.319057 TCTTATATTTCTTTGCAGAGGGAGTA 57.681 34.615 4.15 0.00 0.00 2.59
9346 10634 7.200434 TCTTATATTTCTTTGCAGAGGGAGT 57.800 36.000 4.15 0.00 0.00 3.85
9347 10635 6.204495 GCTCTTATATTTCTTTGCAGAGGGAG 59.796 42.308 4.15 2.06 0.00 4.30
9348 10636 6.058183 GCTCTTATATTTCTTTGCAGAGGGA 58.942 40.000 4.15 0.00 0.00 4.20
9349 10637 5.824624 TGCTCTTATATTTCTTTGCAGAGGG 59.175 40.000 4.15 0.00 0.00 4.30
9350 10638 6.932356 TGCTCTTATATTTCTTTGCAGAGG 57.068 37.500 4.15 0.00 0.00 3.69
9443 10731 9.379791 CGGAGTACTTCCTTTGTAAAGAAATAT 57.620 33.333 5.95 0.00 44.41 1.28
9444 10732 8.370182 ACGGAGTACTTCCTTTGTAAAGAAATA 58.630 33.333 5.95 0.00 44.41 1.40
9445 10733 7.172703 CACGGAGTACTTCCTTTGTAAAGAAAT 59.827 37.037 5.95 0.00 41.61 2.17
9446 10734 6.480981 CACGGAGTACTTCCTTTGTAAAGAAA 59.519 38.462 5.95 0.00 41.61 2.52
9447 10735 5.987347 CACGGAGTACTTCCTTTGTAAAGAA 59.013 40.000 5.95 0.00 41.61 2.52
9448 10736 5.302568 TCACGGAGTACTTCCTTTGTAAAGA 59.697 40.000 5.95 0.00 41.61 2.52
9449 10737 5.404667 GTCACGGAGTACTTCCTTTGTAAAG 59.595 44.000 0.00 0.00 41.61 1.85
9450 10738 5.069516 AGTCACGGAGTACTTCCTTTGTAAA 59.930 40.000 0.00 0.00 41.61 2.01
9451 10739 4.586001 AGTCACGGAGTACTTCCTTTGTAA 59.414 41.667 0.00 0.00 41.61 2.41
9452 10740 4.147321 AGTCACGGAGTACTTCCTTTGTA 58.853 43.478 0.00 0.00 41.61 2.41
9453 10741 2.963782 AGTCACGGAGTACTTCCTTTGT 59.036 45.455 0.00 0.00 41.61 2.83
9454 10742 3.576648 GAGTCACGGAGTACTTCCTTTG 58.423 50.000 0.00 1.00 41.61 2.77
9455 10743 2.228343 CGAGTCACGGAGTACTTCCTTT 59.772 50.000 0.00 0.00 41.61 3.11
9456 10744 1.811359 CGAGTCACGGAGTACTTCCTT 59.189 52.381 0.00 0.00 41.61 3.36
9457 10745 1.451067 CGAGTCACGGAGTACTTCCT 58.549 55.000 0.00 0.00 41.61 3.36
9458 10746 0.179169 GCGAGTCACGGAGTACTTCC 60.179 60.000 0.00 0.00 41.61 3.46
9459 10747 0.520404 TGCGAGTCACGGAGTACTTC 59.480 55.000 0.00 0.00 41.61 3.01
9460 10748 0.956633 TTGCGAGTCACGGAGTACTT 59.043 50.000 0.00 0.00 41.61 2.24
9461 10749 1.174783 ATTGCGAGTCACGGAGTACT 58.825 50.000 0.00 0.00 41.61 2.73
9462 10750 2.717530 CTATTGCGAGTCACGGAGTAC 58.282 52.381 0.00 0.00 41.61 2.73
9463 10751 1.065102 GCTATTGCGAGTCACGGAGTA 59.935 52.381 0.00 0.00 41.61 2.59
9464 10752 2.559023 AGCTATTGCGAGTCACGGAGT 61.559 52.381 0.00 0.00 44.01 3.85
9465 10753 0.101399 AGCTATTGCGAGTCACGGAG 59.899 55.000 0.00 0.00 44.01 4.63
9466 10754 0.530744 AAGCTATTGCGAGTCACGGA 59.469 50.000 0.00 0.00 45.42 4.69
9467 10755 0.924090 GAAGCTATTGCGAGTCACGG 59.076 55.000 0.00 0.00 45.42 4.94
9468 10756 1.849219 GAGAAGCTATTGCGAGTCACG 59.151 52.381 0.00 0.00 45.42 4.35
9469 10757 2.857152 CAGAGAAGCTATTGCGAGTCAC 59.143 50.000 0.00 0.00 45.42 3.67
9470 10758 2.755103 TCAGAGAAGCTATTGCGAGTCA 59.245 45.455 0.00 0.00 45.42 3.41
9471 10759 3.112580 GTCAGAGAAGCTATTGCGAGTC 58.887 50.000 0.00 0.00 45.42 3.36
9472 10760 2.493675 TGTCAGAGAAGCTATTGCGAGT 59.506 45.455 0.00 0.00 45.42 4.18
9473 10761 3.114809 CTGTCAGAGAAGCTATTGCGAG 58.885 50.000 0.00 0.00 45.42 5.03
9474 10762 2.736719 GCTGTCAGAGAAGCTATTGCGA 60.737 50.000 3.32 0.00 45.42 5.10
9475 10763 1.592081 GCTGTCAGAGAAGCTATTGCG 59.408 52.381 3.32 0.00 45.42 4.85
9476 10764 2.625737 TGCTGTCAGAGAAGCTATTGC 58.374 47.619 3.32 0.00 40.21 3.56
9477 10765 3.999001 TGTTGCTGTCAGAGAAGCTATTG 59.001 43.478 3.32 0.00 40.21 1.90
9478 10766 4.277515 TGTTGCTGTCAGAGAAGCTATT 57.722 40.909 3.32 0.00 40.21 1.73
9479 10767 3.969287 TGTTGCTGTCAGAGAAGCTAT 57.031 42.857 3.32 0.00 40.21 2.97
9480 10768 3.751479 TTGTTGCTGTCAGAGAAGCTA 57.249 42.857 3.32 0.00 40.21 3.32
9481 10769 2.627515 TTGTTGCTGTCAGAGAAGCT 57.372 45.000 3.32 0.00 40.21 3.74
9482 10770 3.562505 CATTTGTTGCTGTCAGAGAAGC 58.437 45.455 3.32 0.00 39.96 3.86
9494 10782 5.113502 AGTTAGAACTCAGCATTTGTTGC 57.886 39.130 0.00 0.00 43.20 4.17
9507 10795 2.548480 GCGTTTTGGCTGAGTTAGAACT 59.452 45.455 0.00 0.00 43.16 3.01
9508 10796 2.289547 TGCGTTTTGGCTGAGTTAGAAC 59.710 45.455 0.00 0.00 0.00 3.01
9509 10797 2.289547 GTGCGTTTTGGCTGAGTTAGAA 59.710 45.455 0.00 0.00 0.00 2.10
9510 10798 1.871039 GTGCGTTTTGGCTGAGTTAGA 59.129 47.619 0.00 0.00 0.00 2.10
9511 10799 1.601903 TGTGCGTTTTGGCTGAGTTAG 59.398 47.619 0.00 0.00 0.00 2.34
9512 10800 1.332375 GTGTGCGTTTTGGCTGAGTTA 59.668 47.619 0.00 0.00 0.00 2.24
9513 10801 0.100503 GTGTGCGTTTTGGCTGAGTT 59.899 50.000 0.00 0.00 0.00 3.01
9514 10802 1.029408 TGTGTGCGTTTTGGCTGAGT 61.029 50.000 0.00 0.00 0.00 3.41
9515 10803 0.592247 GTGTGTGCGTTTTGGCTGAG 60.592 55.000 0.00 0.00 0.00 3.35
9516 10804 1.308783 TGTGTGTGCGTTTTGGCTGA 61.309 50.000 0.00 0.00 0.00 4.26
9517 10805 1.138459 TGTGTGTGCGTTTTGGCTG 59.862 52.632 0.00 0.00 0.00 4.85
9518 10806 1.138671 GTGTGTGTGCGTTTTGGCT 59.861 52.632 0.00 0.00 0.00 4.75
9519 10807 0.527385 ATGTGTGTGTGCGTTTTGGC 60.527 50.000 0.00 0.00 0.00 4.52
9520 10808 1.198767 CATGTGTGTGTGCGTTTTGG 58.801 50.000 0.00 0.00 0.00 3.28
9521 10809 0.571661 GCATGTGTGTGTGCGTTTTG 59.428 50.000 0.00 0.00 0.00 2.44
9522 10810 0.455410 AGCATGTGTGTGTGCGTTTT 59.545 45.000 0.00 0.00 45.69 2.43
9523 10811 0.248580 CAGCATGTGTGTGTGCGTTT 60.249 50.000 0.00 0.00 45.69 3.60
9524 10812 1.094650 TCAGCATGTGTGTGTGCGTT 61.095 50.000 0.00 0.00 45.69 4.84
9525 10813 0.886043 ATCAGCATGTGTGTGTGCGT 60.886 50.000 0.00 0.00 45.69 5.24
9526 10814 0.239082 AATCAGCATGTGTGTGTGCG 59.761 50.000 0.00 0.00 45.69 5.34
9527 10815 2.030540 AGAAATCAGCATGTGTGTGTGC 60.031 45.455 0.00 0.00 41.57 4.57
9528 10816 3.251487 TCAGAAATCAGCATGTGTGTGTG 59.749 43.478 0.00 0.00 37.40 3.82
9529 10817 3.479489 TCAGAAATCAGCATGTGTGTGT 58.521 40.909 0.00 0.00 37.40 3.72
9530 10818 4.492791 TTCAGAAATCAGCATGTGTGTG 57.507 40.909 0.00 0.00 37.40 3.82
9531 10819 4.763279 TCATTCAGAAATCAGCATGTGTGT 59.237 37.500 0.00 0.00 37.40 3.72
9532 10820 5.305139 TCATTCAGAAATCAGCATGTGTG 57.695 39.130 0.00 0.00 37.40 3.82
9533 10821 4.142447 GCTCATTCAGAAATCAGCATGTGT 60.142 41.667 0.00 0.00 38.72 3.72
9534 10822 4.142469 TGCTCATTCAGAAATCAGCATGTG 60.142 41.667 9.10 0.00 43.12 3.21
9535 10823 4.014406 TGCTCATTCAGAAATCAGCATGT 58.986 39.130 9.10 0.00 43.12 3.21
9536 10824 4.632538 TGCTCATTCAGAAATCAGCATG 57.367 40.909 9.10 0.00 43.12 4.06
9539 10827 6.793349 AGTAAATGCTCATTCAGAAATCAGC 58.207 36.000 4.93 4.93 39.27 4.26
9541 10829 9.617523 TGATAGTAAATGCTCATTCAGAAATCA 57.382 29.630 0.00 1.17 0.00 2.57
9542 10830 9.875675 GTGATAGTAAATGCTCATTCAGAAATC 57.124 33.333 0.00 0.00 0.00 2.17
9543 10831 9.399797 TGTGATAGTAAATGCTCATTCAGAAAT 57.600 29.630 0.00 0.00 0.00 2.17
9544 10832 8.791327 TGTGATAGTAAATGCTCATTCAGAAA 57.209 30.769 0.00 0.00 0.00 2.52
9545 10833 8.969260 ATGTGATAGTAAATGCTCATTCAGAA 57.031 30.769 0.00 0.00 0.00 3.02
9546 10834 8.833493 CAATGTGATAGTAAATGCTCATTCAGA 58.167 33.333 0.00 0.00 0.00 3.27
9547 10835 8.618677 ACAATGTGATAGTAAATGCTCATTCAG 58.381 33.333 0.00 0.00 0.00 3.02
9548 10836 8.510243 ACAATGTGATAGTAAATGCTCATTCA 57.490 30.769 0.00 0.00 0.00 2.57
9552 10840 9.056005 GGAATACAATGTGATAGTAAATGCTCA 57.944 33.333 0.00 0.00 0.00 4.26
9553 10841 8.507249 GGGAATACAATGTGATAGTAAATGCTC 58.493 37.037 0.00 0.00 0.00 4.26
9554 10842 8.220559 AGGGAATACAATGTGATAGTAAATGCT 58.779 33.333 0.00 0.00 0.00 3.79
9555 10843 8.396272 AGGGAATACAATGTGATAGTAAATGC 57.604 34.615 0.00 0.00 0.00 3.56
9556 10844 9.003658 GGAGGGAATACAATGTGATAGTAAATG 57.996 37.037 0.00 0.00 0.00 2.32
9557 10845 7.878127 CGGAGGGAATACAATGTGATAGTAAAT 59.122 37.037 0.00 0.00 0.00 1.40
9558 10846 7.147620 ACGGAGGGAATACAATGTGATAGTAAA 60.148 37.037 0.00 0.00 0.00 2.01
9559 10847 6.325545 ACGGAGGGAATACAATGTGATAGTAA 59.674 38.462 0.00 0.00 0.00 2.24
9560 10848 5.836898 ACGGAGGGAATACAATGTGATAGTA 59.163 40.000 0.00 0.00 0.00 1.82
9561 10849 4.654262 ACGGAGGGAATACAATGTGATAGT 59.346 41.667 0.00 0.00 0.00 2.12
9562 10850 5.215252 ACGGAGGGAATACAATGTGATAG 57.785 43.478 0.00 0.00 0.00 2.08
9563 10851 4.039973 GGACGGAGGGAATACAATGTGATA 59.960 45.833 0.00 0.00 0.00 2.15
9564 10852 3.181454 GGACGGAGGGAATACAATGTGAT 60.181 47.826 0.00 0.00 0.00 3.06
9565 10853 2.169769 GGACGGAGGGAATACAATGTGA 59.830 50.000 0.00 0.00 0.00 3.58
9566 10854 2.561569 GGACGGAGGGAATACAATGTG 58.438 52.381 0.00 0.00 0.00 3.21
9567 10855 1.138266 CGGACGGAGGGAATACAATGT 59.862 52.381 0.00 0.00 0.00 2.71
9568 10856 1.411246 TCGGACGGAGGGAATACAATG 59.589 52.381 0.00 0.00 0.00 2.82
9569 10857 1.784358 TCGGACGGAGGGAATACAAT 58.216 50.000 0.00 0.00 0.00 2.71
9570 10858 1.559368 TTCGGACGGAGGGAATACAA 58.441 50.000 0.00 0.00 0.00 2.41
9571 10859 1.559368 TTTCGGACGGAGGGAATACA 58.441 50.000 0.00 0.00 0.00 2.29
9572 10860 2.678471 TTTTCGGACGGAGGGAATAC 57.322 50.000 0.00 0.00 0.00 1.89
9573 10861 3.962718 AGTATTTTCGGACGGAGGGAATA 59.037 43.478 0.00 0.00 0.00 1.75
9574 10862 2.770232 AGTATTTTCGGACGGAGGGAAT 59.230 45.455 0.00 0.00 0.00 3.01
9575 10863 2.181975 AGTATTTTCGGACGGAGGGAA 58.818 47.619 0.00 0.00 0.00 3.97
9576 10864 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
9577 10865 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
9578 10866 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
9579 10867 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
9580 10868 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
9581 10869 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
9582 10870 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
9583 10871 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
9584 10872 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
9585 10873 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
9593 10881 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
9594 10882 9.709495 TTCCCTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
9596 10884 9.656040 CATTCCCTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
9597 10885 9.657419 ACATTCCCTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 0.00 3.06
9606 10894 9.712305 CGTCTAGATACATTCCCTTTTATTCAT 57.288 33.333 0.00 0.00 0.00 2.57
9607 10895 8.701895 ACGTCTAGATACATTCCCTTTTATTCA 58.298 33.333 0.00 0.00 0.00 2.57
9612 10900 9.901172 AAAATACGTCTAGATACATTCCCTTTT 57.099 29.630 0.00 0.00 0.00 2.27
9615 10903 9.364653 ACTAAAATACGTCTAGATACATTCCCT 57.635 33.333 0.00 0.00 0.00 4.20
9616 10904 9.978044 AACTAAAATACGTCTAGATACATTCCC 57.022 33.333 0.00 0.00 0.00 3.97
9661 10949 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
9662 10950 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
9663 10951 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
9664 10952 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
9665 10953 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
9666 10954 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
9667 10955 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
9668 10956 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
9669 10957 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
9670 10958 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
9671 10959 4.630069 CCTTCGTCCGAAAATACTTGTCAT 59.370 41.667 3.52 0.00 33.34 3.06
9672 10960 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
9673 10961 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
9674 10962 3.332034 CCCTTCGTCCGAAAATACTTGT 58.668 45.455 3.52 0.00 33.34 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.