Multiple sequence alignment - TraesCS6A01G342300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G342300 chr6A 100.000 2552 0 0 1 2552 574946625 574944074 0.000000e+00 4713
1 TraesCS6A01G342300 chr6A 89.236 288 24 5 86 368 565048922 565049207 1.120000e-93 353
2 TraesCS6A01G342300 chr6A 88.372 172 18 1 413 584 565049215 565049384 3.330000e-49 206
3 TraesCS6A01G342300 chr2D 92.904 1973 128 10 582 2552 12544106 12542144 0.000000e+00 2857
4 TraesCS6A01G342300 chr2D 90.365 1972 164 19 582 2547 590929804 590927853 0.000000e+00 2566
5 TraesCS6A01G342300 chr2D 85.864 382 36 8 1 364 432008715 432008334 8.560000e-105 390
6 TraesCS6A01G342300 chr2D 86.435 317 35 7 1 311 46845037 46845351 8.740000e-90 340
7 TraesCS6A01G342300 chr7B 90.696 1967 159 14 585 2547 685254374 685252428 0.000000e+00 2597
8 TraesCS6A01G342300 chr7B 87.809 1985 190 23 582 2547 691229729 691227778 0.000000e+00 2278
9 TraesCS6A01G342300 chr3B 89.659 1963 179 16 584 2544 124502329 124500389 0.000000e+00 2479
10 TraesCS6A01G342300 chr3B 89.404 1963 185 16 584 2544 124560191 124558250 0.000000e+00 2451
11 TraesCS6A01G342300 chr3B 86.704 361 43 5 584 942 561239012 561239369 1.840000e-106 396
12 TraesCS6A01G342300 chr2B 88.962 1975 179 16 583 2552 540525731 540527671 0.000000e+00 2403
13 TraesCS6A01G342300 chr2B 85.957 470 60 2 584 1049 797444899 797444432 4.900000e-137 497
14 TraesCS6A01G342300 chr2B 87.791 172 19 1 413 584 4921098 4920929 1.550000e-47 200
15 TraesCS6A01G342300 chr2B 85.795 176 23 1 409 584 98126496 98126669 4.340000e-43 185
16 TraesCS6A01G342300 chr5D 92.068 1702 112 13 849 2548 353835367 353833687 0.000000e+00 2374
17 TraesCS6A01G342300 chr5D 87.139 381 30 9 1 364 37843000 37842622 5.080000e-112 414
18 TraesCS6A01G342300 chr5D 85.864 382 34 8 1 364 292998855 292998476 3.080000e-104 388
19 TraesCS6A01G342300 chr3A 90.930 1753 137 13 578 2328 47284893 47286625 0.000000e+00 2337
20 TraesCS6A01G342300 chr5B 87.755 588 55 10 1 584 137656946 137657520 0.000000e+00 671
21 TraesCS6A01G342300 chr5B 90.116 344 26 6 46 383 485809406 485809065 8.380000e-120 440
22 TraesCS6A01G342300 chr1B 88.866 494 38 9 1 477 46137449 46136956 2.190000e-165 592
23 TraesCS6A01G342300 chr5A 82.580 597 57 19 1 583 4723278 4722715 1.370000e-132 483
24 TraesCS6A01G342300 chr4B 82.580 597 57 19 1 583 597295747 597295184 1.370000e-132 483
25 TraesCS6A01G342300 chr6B 86.919 344 29 2 257 584 647711068 647710725 3.100000e-99 372
26 TraesCS6A01G342300 chr6B 89.080 174 17 1 411 584 94331601 94331430 5.530000e-52 215
27 TraesCS6A01G342300 chr7A 87.209 172 20 1 413 584 736106610 736106441 7.200000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G342300 chr6A 574944074 574946625 2551 True 4713 4713 100.000 1 2552 1 chr6A.!!$R1 2551
1 TraesCS6A01G342300 chr2D 12542144 12544106 1962 True 2857 2857 92.904 582 2552 1 chr2D.!!$R1 1970
2 TraesCS6A01G342300 chr2D 590927853 590929804 1951 True 2566 2566 90.365 582 2547 1 chr2D.!!$R3 1965
3 TraesCS6A01G342300 chr7B 685252428 685254374 1946 True 2597 2597 90.696 585 2547 1 chr7B.!!$R1 1962
4 TraesCS6A01G342300 chr7B 691227778 691229729 1951 True 2278 2278 87.809 582 2547 1 chr7B.!!$R2 1965
5 TraesCS6A01G342300 chr3B 124500389 124502329 1940 True 2479 2479 89.659 584 2544 1 chr3B.!!$R1 1960
6 TraesCS6A01G342300 chr3B 124558250 124560191 1941 True 2451 2451 89.404 584 2544 1 chr3B.!!$R2 1960
7 TraesCS6A01G342300 chr2B 540525731 540527671 1940 False 2403 2403 88.962 583 2552 1 chr2B.!!$F2 1969
8 TraesCS6A01G342300 chr5D 353833687 353835367 1680 True 2374 2374 92.068 849 2548 1 chr5D.!!$R3 1699
9 TraesCS6A01G342300 chr3A 47284893 47286625 1732 False 2337 2337 90.930 578 2328 1 chr3A.!!$F1 1750
10 TraesCS6A01G342300 chr5B 137656946 137657520 574 False 671 671 87.755 1 584 1 chr5B.!!$F1 583
11 TraesCS6A01G342300 chr5A 4722715 4723278 563 True 483 483 82.580 1 583 1 chr5A.!!$R1 582
12 TraesCS6A01G342300 chr4B 597295184 597295747 563 True 483 483 82.580 1 583 1 chr4B.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 357 0.038021 TGGCACTTCAGGCATTAGCA 59.962 50.0 0.0 0.0 44.61 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 2576 0.884704 CAGCACAACCTTACACGCCT 60.885 55.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.006989 GTGTATGGTGTGTTGGCTTGATA 58.993 43.478 0.00 0.00 0.00 2.15
30 31 1.818060 TGGTGTGTTGGCTTGATATGC 59.182 47.619 0.00 0.00 0.00 3.14
31 32 1.818060 GGTGTGTTGGCTTGATATGCA 59.182 47.619 0.00 0.00 0.00 3.96
32 33 2.415893 GGTGTGTTGGCTTGATATGCAC 60.416 50.000 0.00 0.00 0.00 4.57
33 34 1.468127 TGTGTTGGCTTGATATGCACG 59.532 47.619 0.00 0.00 0.00 5.34
34 35 0.451383 TGTTGGCTTGATATGCACGC 59.549 50.000 0.00 0.00 40.75 5.34
35 36 0.589729 GTTGGCTTGATATGCACGCG 60.590 55.000 3.53 3.53 42.26 6.01
36 37 2.051882 GGCTTGATATGCACGCGC 60.052 61.111 5.73 0.00 42.26 6.86
85 90 0.173935 CTGGCTCACTGCTCTCTCTG 59.826 60.000 0.00 0.00 42.39 3.35
86 91 0.541530 TGGCTCACTGCTCTCTCTGT 60.542 55.000 0.00 0.00 42.39 3.41
123 128 2.409948 ATACTTTGCCTCTGGTCTGC 57.590 50.000 0.00 0.00 0.00 4.26
132 137 1.408405 CCTCTGGTCTGCATCATGCTT 60.408 52.381 11.84 0.00 45.31 3.91
133 138 1.941294 CTCTGGTCTGCATCATGCTTC 59.059 52.381 11.84 1.07 45.31 3.86
134 139 1.558294 TCTGGTCTGCATCATGCTTCT 59.442 47.619 11.84 0.00 45.31 2.85
136 141 3.132160 CTGGTCTGCATCATGCTTCTAG 58.868 50.000 11.84 0.00 45.31 2.43
137 142 2.502947 TGGTCTGCATCATGCTTCTAGT 59.497 45.455 11.84 0.00 45.31 2.57
138 143 2.871022 GGTCTGCATCATGCTTCTAGTG 59.129 50.000 11.84 0.00 45.31 2.74
144 149 5.733676 TGCATCATGCTTCTAGTGTCTTTA 58.266 37.500 11.84 0.00 45.31 1.85
145 150 6.351711 TGCATCATGCTTCTAGTGTCTTTAT 58.648 36.000 11.84 0.00 45.31 1.40
154 159 6.630638 GCTTCTAGTGTCTTTATAGGCAGGTT 60.631 42.308 0.00 0.00 36.49 3.50
163 168 5.584649 TCTTTATAGGCAGGTTGATGTTTCG 59.415 40.000 0.00 0.00 0.00 3.46
170 176 4.161333 GCAGGTTGATGTTTCGAAATCAG 58.839 43.478 14.69 4.31 34.43 2.90
180 186 6.935741 TGTTTCGAAATCAGGAGAGAAAAA 57.064 33.333 14.69 0.00 30.79 1.94
183 189 6.787085 TTCGAAATCAGGAGAGAAAAAGTC 57.213 37.500 0.00 0.00 0.00 3.01
196 202 7.500559 GGAGAGAAAAAGTCCTTGCATGTATAT 59.499 37.037 0.00 0.00 0.00 0.86
221 227 9.823647 ATACTTTTAGATGACACATACCAGAAG 57.176 33.333 0.00 0.00 0.00 2.85
222 228 7.680730 ACTTTTAGATGACACATACCAGAAGT 58.319 34.615 0.00 0.00 0.00 3.01
223 229 7.819900 ACTTTTAGATGACACATACCAGAAGTC 59.180 37.037 0.00 0.00 0.00 3.01
224 230 7.482169 TTTAGATGACACATACCAGAAGTCT 57.518 36.000 0.00 0.00 0.00 3.24
225 231 7.482169 TTAGATGACACATACCAGAAGTCTT 57.518 36.000 0.00 0.00 0.00 3.01
226 232 5.971763 AGATGACACATACCAGAAGTCTTC 58.028 41.667 4.26 4.26 35.10 2.87
227 233 4.537135 TGACACATACCAGAAGTCTTCC 57.463 45.455 9.04 0.00 0.00 3.46
228 234 3.260884 TGACACATACCAGAAGTCTTCCC 59.739 47.826 9.04 0.00 0.00 3.97
229 235 3.515901 GACACATACCAGAAGTCTTCCCT 59.484 47.826 9.04 0.00 0.00 4.20
230 236 4.684724 ACACATACCAGAAGTCTTCCCTA 58.315 43.478 9.04 0.00 0.00 3.53
231 237 4.466726 ACACATACCAGAAGTCTTCCCTAC 59.533 45.833 9.04 0.00 0.00 3.18
232 238 3.700038 ACATACCAGAAGTCTTCCCTACG 59.300 47.826 9.04 0.00 0.00 3.51
233 239 2.599408 ACCAGAAGTCTTCCCTACGA 57.401 50.000 9.04 0.00 0.00 3.43
234 240 2.885616 ACCAGAAGTCTTCCCTACGAA 58.114 47.619 9.04 0.00 0.00 3.85
235 241 3.236896 ACCAGAAGTCTTCCCTACGAAA 58.763 45.455 9.04 0.00 0.00 3.46
236 242 3.644738 ACCAGAAGTCTTCCCTACGAAAA 59.355 43.478 9.04 0.00 0.00 2.29
237 243 4.286291 ACCAGAAGTCTTCCCTACGAAAAT 59.714 41.667 9.04 0.00 0.00 1.82
238 244 4.870991 CCAGAAGTCTTCCCTACGAAAATC 59.129 45.833 9.04 0.00 0.00 2.17
239 245 5.479306 CAGAAGTCTTCCCTACGAAAATCA 58.521 41.667 9.04 0.00 0.00 2.57
240 246 6.109359 CAGAAGTCTTCCCTACGAAAATCAT 58.891 40.000 9.04 0.00 0.00 2.45
241 247 6.036517 CAGAAGTCTTCCCTACGAAAATCATG 59.963 42.308 9.04 0.00 0.00 3.07
242 248 5.422214 AGTCTTCCCTACGAAAATCATGT 57.578 39.130 0.00 0.00 0.00 3.21
243 249 5.178797 AGTCTTCCCTACGAAAATCATGTG 58.821 41.667 0.00 0.00 0.00 3.21
244 250 4.332819 GTCTTCCCTACGAAAATCATGTGG 59.667 45.833 0.00 0.00 0.00 4.17
245 251 2.639065 TCCCTACGAAAATCATGTGGC 58.361 47.619 0.00 0.00 0.00 5.01
246 252 2.026729 TCCCTACGAAAATCATGTGGCA 60.027 45.455 0.00 0.00 0.00 4.92
247 253 2.951642 CCCTACGAAAATCATGTGGCAT 59.048 45.455 0.00 0.00 0.00 4.40
248 254 3.381272 CCCTACGAAAATCATGTGGCATT 59.619 43.478 0.00 0.00 0.00 3.56
249 255 4.353737 CCTACGAAAATCATGTGGCATTG 58.646 43.478 0.00 0.00 0.00 2.82
250 256 3.940209 ACGAAAATCATGTGGCATTGT 57.060 38.095 0.00 0.00 0.00 2.71
251 257 3.577667 ACGAAAATCATGTGGCATTGTG 58.422 40.909 0.00 0.00 0.00 3.33
252 258 3.255395 ACGAAAATCATGTGGCATTGTGA 59.745 39.130 0.00 0.00 0.00 3.58
253 259 3.609373 CGAAAATCATGTGGCATTGTGAC 59.391 43.478 0.00 0.00 0.00 3.67
254 260 2.925578 AATCATGTGGCATTGTGACG 57.074 45.000 0.00 0.00 0.00 4.35
255 261 0.452987 ATCATGTGGCATTGTGACGC 59.547 50.000 0.00 0.00 36.17 5.19
268 274 4.620937 GACGCCCCGGCCCTTATC 62.621 72.222 0.00 0.00 37.98 1.75
270 276 3.873812 CGCCCCGGCCCTTATCTT 61.874 66.667 0.00 0.00 37.98 2.40
271 277 2.601299 GCCCCGGCCCTTATCTTT 59.399 61.111 0.00 0.00 34.56 2.52
272 278 1.841302 GCCCCGGCCCTTATCTTTA 59.159 57.895 0.00 0.00 34.56 1.85
273 279 0.250770 GCCCCGGCCCTTATCTTTAG 60.251 60.000 0.00 0.00 34.56 1.85
274 280 1.430992 CCCCGGCCCTTATCTTTAGA 58.569 55.000 0.00 0.00 0.00 2.10
275 281 1.772453 CCCCGGCCCTTATCTTTAGAA 59.228 52.381 0.00 0.00 0.00 2.10
276 282 2.173996 CCCCGGCCCTTATCTTTAGAAA 59.826 50.000 0.00 0.00 0.00 2.52
277 283 3.181433 CCCCGGCCCTTATCTTTAGAAAT 60.181 47.826 0.00 0.00 0.00 2.17
278 284 4.470602 CCCGGCCCTTATCTTTAGAAATT 58.529 43.478 0.00 0.00 0.00 1.82
279 285 4.893524 CCCGGCCCTTATCTTTAGAAATTT 59.106 41.667 0.00 0.00 0.00 1.82
280 286 5.221244 CCCGGCCCTTATCTTTAGAAATTTG 60.221 44.000 0.00 0.00 0.00 2.32
281 287 5.359860 CCGGCCCTTATCTTTAGAAATTTGT 59.640 40.000 0.00 0.00 0.00 2.83
282 288 6.265577 CGGCCCTTATCTTTAGAAATTTGTG 58.734 40.000 0.00 0.00 0.00 3.33
283 289 6.094881 CGGCCCTTATCTTTAGAAATTTGTGA 59.905 38.462 0.00 0.00 0.00 3.58
284 290 7.201821 CGGCCCTTATCTTTAGAAATTTGTGAT 60.202 37.037 0.00 0.00 0.00 3.06
285 291 7.922811 GGCCCTTATCTTTAGAAATTTGTGATG 59.077 37.037 0.00 0.00 0.00 3.07
286 292 8.470002 GCCCTTATCTTTAGAAATTTGTGATGT 58.530 33.333 0.00 0.00 0.00 3.06
287 293 9.793252 CCCTTATCTTTAGAAATTTGTGATGTG 57.207 33.333 0.00 0.00 0.00 3.21
296 302 9.814899 TTAGAAATTTGTGATGTGTTTTCATGT 57.185 25.926 0.00 0.00 0.00 3.21
297 303 8.356533 AGAAATTTGTGATGTGTTTTCATGTC 57.643 30.769 0.00 0.00 0.00 3.06
298 304 8.199449 AGAAATTTGTGATGTGTTTTCATGTCT 58.801 29.630 0.00 0.00 0.00 3.41
299 305 7.703298 AATTTGTGATGTGTTTTCATGTCTG 57.297 32.000 0.00 0.00 0.00 3.51
300 306 5.833406 TTGTGATGTGTTTTCATGTCTGT 57.167 34.783 0.00 0.00 0.00 3.41
301 307 5.172460 TGTGATGTGTTTTCATGTCTGTG 57.828 39.130 0.00 0.00 0.00 3.66
302 308 4.639755 TGTGATGTGTTTTCATGTCTGTGT 59.360 37.500 0.00 0.00 0.00 3.72
303 309 5.125257 TGTGATGTGTTTTCATGTCTGTGTT 59.875 36.000 0.00 0.00 0.00 3.32
304 310 5.456497 GTGATGTGTTTTCATGTCTGTGTTG 59.544 40.000 0.00 0.00 0.00 3.33
305 311 5.125257 TGATGTGTTTTCATGTCTGTGTTGT 59.875 36.000 0.00 0.00 0.00 3.32
306 312 4.731720 TGTGTTTTCATGTCTGTGTTGTG 58.268 39.130 0.00 0.00 0.00 3.33
307 313 4.457257 TGTGTTTTCATGTCTGTGTTGTGA 59.543 37.500 0.00 0.00 0.00 3.58
308 314 5.125257 TGTGTTTTCATGTCTGTGTTGTGAT 59.875 36.000 0.00 0.00 0.00 3.06
309 315 5.456497 GTGTTTTCATGTCTGTGTTGTGATG 59.544 40.000 0.00 0.00 0.00 3.07
310 316 5.125257 TGTTTTCATGTCTGTGTTGTGATGT 59.875 36.000 0.00 0.00 0.00 3.06
311 317 6.317391 TGTTTTCATGTCTGTGTTGTGATGTA 59.683 34.615 0.00 0.00 0.00 2.29
312 318 5.922739 TTCATGTCTGTGTTGTGATGTAC 57.077 39.130 0.00 0.00 0.00 2.90
313 319 4.954875 TCATGTCTGTGTTGTGATGTACA 58.045 39.130 0.00 0.00 37.56 2.90
314 320 5.550290 TCATGTCTGTGTTGTGATGTACAT 58.450 37.500 8.43 8.43 39.48 2.29
315 321 6.696411 TCATGTCTGTGTTGTGATGTACATA 58.304 36.000 8.71 0.00 39.48 2.29
316 322 6.813152 TCATGTCTGTGTTGTGATGTACATAG 59.187 38.462 8.71 0.00 39.48 2.23
317 323 5.478407 TGTCTGTGTTGTGATGTACATAGG 58.522 41.667 8.71 0.00 39.48 2.57
318 324 5.245075 TGTCTGTGTTGTGATGTACATAGGA 59.755 40.000 8.71 0.00 39.48 2.94
319 325 5.807520 GTCTGTGTTGTGATGTACATAGGAG 59.192 44.000 8.71 0.00 39.48 3.69
320 326 4.503910 TGTGTTGTGATGTACATAGGAGC 58.496 43.478 8.71 0.00 39.48 4.70
321 327 4.020662 TGTGTTGTGATGTACATAGGAGCA 60.021 41.667 8.71 0.00 39.48 4.26
322 328 5.118990 GTGTTGTGATGTACATAGGAGCAT 58.881 41.667 8.71 0.00 39.48 3.79
323 329 5.007039 GTGTTGTGATGTACATAGGAGCATG 59.993 44.000 8.71 0.00 39.48 4.06
324 330 5.104982 TGTTGTGATGTACATAGGAGCATGA 60.105 40.000 8.71 0.00 39.48 3.07
325 331 5.813513 TGTGATGTACATAGGAGCATGAT 57.186 39.130 8.71 0.00 33.42 2.45
326 332 6.178607 TGTGATGTACATAGGAGCATGATT 57.821 37.500 8.71 0.00 33.42 2.57
327 333 6.594744 TGTGATGTACATAGGAGCATGATTT 58.405 36.000 8.71 0.00 33.42 2.17
328 334 6.484308 TGTGATGTACATAGGAGCATGATTTG 59.516 38.462 8.71 0.00 33.42 2.32
329 335 6.484643 GTGATGTACATAGGAGCATGATTTGT 59.515 38.462 8.71 0.00 0.00 2.83
330 336 7.012704 GTGATGTACATAGGAGCATGATTTGTT 59.987 37.037 8.71 0.00 0.00 2.83
331 337 6.925610 TGTACATAGGAGCATGATTTGTTC 57.074 37.500 0.00 0.00 35.00 3.18
332 338 6.653020 TGTACATAGGAGCATGATTTGTTCT 58.347 36.000 0.00 0.00 35.97 3.01
333 339 6.539826 TGTACATAGGAGCATGATTTGTTCTG 59.460 38.462 0.00 0.00 35.97 3.02
334 340 4.885907 ACATAGGAGCATGATTTGTTCTGG 59.114 41.667 0.00 0.00 35.97 3.86
335 341 2.097825 AGGAGCATGATTTGTTCTGGC 58.902 47.619 0.00 0.00 35.97 4.85
336 342 1.820519 GGAGCATGATTTGTTCTGGCA 59.179 47.619 0.00 0.00 35.97 4.92
337 343 2.416431 GGAGCATGATTTGTTCTGGCAC 60.416 50.000 0.00 0.00 35.97 5.01
338 344 2.490903 GAGCATGATTTGTTCTGGCACT 59.509 45.455 0.00 0.00 33.14 4.40
339 345 2.895404 AGCATGATTTGTTCTGGCACTT 59.105 40.909 0.00 0.00 0.00 3.16
340 346 3.057033 AGCATGATTTGTTCTGGCACTTC 60.057 43.478 0.00 0.00 0.00 3.01
341 347 3.305539 GCATGATTTGTTCTGGCACTTCA 60.306 43.478 0.00 0.00 0.00 3.02
342 348 4.482386 CATGATTTGTTCTGGCACTTCAG 58.518 43.478 0.00 0.00 36.17 3.02
343 349 2.886523 TGATTTGTTCTGGCACTTCAGG 59.113 45.455 0.00 0.00 35.58 3.86
344 350 1.032014 TTTGTTCTGGCACTTCAGGC 58.968 50.000 0.00 0.00 35.58 4.85
345 351 0.106769 TTGTTCTGGCACTTCAGGCA 60.107 50.000 0.00 0.00 42.25 4.75
346 352 0.111061 TGTTCTGGCACTTCAGGCAT 59.889 50.000 0.00 0.00 43.56 4.40
347 353 1.251251 GTTCTGGCACTTCAGGCATT 58.749 50.000 0.00 0.00 43.56 3.56
348 354 2.224744 TGTTCTGGCACTTCAGGCATTA 60.225 45.455 0.00 0.00 43.56 1.90
349 355 2.408271 TCTGGCACTTCAGGCATTAG 57.592 50.000 0.00 0.00 43.56 1.73
350 356 0.737219 CTGGCACTTCAGGCATTAGC 59.263 55.000 0.00 0.00 43.56 3.09
351 357 0.038021 TGGCACTTCAGGCATTAGCA 59.962 50.000 0.00 0.00 44.61 3.49
352 358 0.453390 GGCACTTCAGGCATTAGCAC 59.547 55.000 0.00 0.00 44.61 4.40
353 359 0.097674 GCACTTCAGGCATTAGCACG 59.902 55.000 0.00 0.00 44.61 5.34
354 360 0.097674 CACTTCAGGCATTAGCACGC 59.902 55.000 0.00 0.00 44.61 5.34
363 369 4.859629 GGCATTAGCACGCCTATAATAC 57.140 45.455 0.00 0.00 45.29 1.89
364 370 4.250464 GGCATTAGCACGCCTATAATACA 58.750 43.478 0.00 0.00 45.29 2.29
365 371 4.330074 GGCATTAGCACGCCTATAATACAG 59.670 45.833 0.00 0.00 45.29 2.74
366 372 4.330074 GCATTAGCACGCCTATAATACAGG 59.670 45.833 0.00 0.00 41.58 4.00
367 373 5.479306 CATTAGCACGCCTATAATACAGGT 58.521 41.667 0.00 0.00 35.45 4.00
368 374 3.662247 AGCACGCCTATAATACAGGTC 57.338 47.619 0.00 0.00 35.45 3.85
369 375 3.231818 AGCACGCCTATAATACAGGTCT 58.768 45.455 0.00 0.00 35.45 3.85
370 376 3.641906 AGCACGCCTATAATACAGGTCTT 59.358 43.478 0.00 0.00 35.45 3.01
371 377 3.741344 GCACGCCTATAATACAGGTCTTG 59.259 47.826 0.00 0.00 35.45 3.02
372 378 4.500887 GCACGCCTATAATACAGGTCTTGA 60.501 45.833 0.00 0.00 35.45 3.02
373 379 5.223382 CACGCCTATAATACAGGTCTTGAG 58.777 45.833 0.00 0.00 35.45 3.02
374 380 4.894114 ACGCCTATAATACAGGTCTTGAGT 59.106 41.667 0.00 0.00 35.45 3.41
375 381 5.009811 ACGCCTATAATACAGGTCTTGAGTC 59.990 44.000 0.00 0.00 35.45 3.36
376 382 5.241949 CGCCTATAATACAGGTCTTGAGTCT 59.758 44.000 0.00 0.00 35.45 3.24
377 383 6.430308 CGCCTATAATACAGGTCTTGAGTCTA 59.570 42.308 0.00 0.00 35.45 2.59
378 384 7.573469 CGCCTATAATACAGGTCTTGAGTCTAC 60.573 44.444 0.00 0.00 35.45 2.59
379 385 7.230913 GCCTATAATACAGGTCTTGAGTCTACA 59.769 40.741 0.00 0.00 35.45 2.74
380 386 9.132923 CCTATAATACAGGTCTTGAGTCTACAA 57.867 37.037 0.00 0.00 0.00 2.41
383 389 6.919775 ATACAGGTCTTGAGTCTACAAAGT 57.080 37.500 0.00 0.00 0.00 2.66
384 390 4.950050 ACAGGTCTTGAGTCTACAAAGTG 58.050 43.478 0.00 0.00 0.00 3.16
385 391 4.406003 ACAGGTCTTGAGTCTACAAAGTGT 59.594 41.667 0.00 0.00 0.00 3.55
386 392 4.985409 CAGGTCTTGAGTCTACAAAGTGTC 59.015 45.833 0.00 0.00 0.00 3.67
387 393 4.649674 AGGTCTTGAGTCTACAAAGTGTCA 59.350 41.667 0.00 0.00 0.00 3.58
388 394 5.305644 AGGTCTTGAGTCTACAAAGTGTCAT 59.694 40.000 0.00 0.00 0.00 3.06
389 395 6.493802 AGGTCTTGAGTCTACAAAGTGTCATA 59.506 38.462 0.00 0.00 0.00 2.15
390 396 7.179338 AGGTCTTGAGTCTACAAAGTGTCATAT 59.821 37.037 0.00 0.00 0.00 1.78
391 397 8.467598 GGTCTTGAGTCTACAAAGTGTCATATA 58.532 37.037 0.00 0.00 0.00 0.86
392 398 9.291664 GTCTTGAGTCTACAAAGTGTCATATAC 57.708 37.037 0.00 0.00 0.00 1.47
393 399 9.020731 TCTTGAGTCTACAAAGTGTCATATACA 57.979 33.333 0.00 0.00 35.06 2.29
394 400 9.809096 CTTGAGTCTACAAAGTGTCATATACAT 57.191 33.333 0.00 0.00 41.10 2.29
396 402 9.586435 TGAGTCTACAAAGTGTCATATACATTG 57.414 33.333 0.00 0.00 41.10 2.82
397 403 9.587772 GAGTCTACAAAGTGTCATATACATTGT 57.412 33.333 0.00 0.00 41.74 2.71
403 409 9.448438 ACAAAGTGTCATATACATTGTATGTGT 57.552 29.630 24.25 9.73 44.60 3.72
404 410 9.706846 CAAAGTGTCATATACATTGTATGTGTG 57.293 33.333 24.25 17.01 44.60 3.82
405 411 9.448438 AAAGTGTCATATACATTGTATGTGTGT 57.552 29.630 24.25 11.13 44.60 3.72
406 412 8.424274 AGTGTCATATACATTGTATGTGTGTG 57.576 34.615 24.25 11.06 44.60 3.82
407 413 8.040727 AGTGTCATATACATTGTATGTGTGTGT 58.959 33.333 24.25 11.63 44.60 3.72
408 414 8.116136 GTGTCATATACATTGTATGTGTGTGTG 58.884 37.037 24.25 7.88 44.60 3.82
409 415 7.821846 TGTCATATACATTGTATGTGTGTGTGT 59.178 33.333 24.25 0.46 44.60 3.72
410 416 8.116136 GTCATATACATTGTATGTGTGTGTGTG 58.884 37.037 24.25 6.76 44.60 3.82
411 417 7.821846 TCATATACATTGTATGTGTGTGTGTGT 59.178 33.333 24.25 0.00 44.60 3.72
412 418 4.550577 ACATTGTATGTGTGTGTGTGTG 57.449 40.909 0.00 0.00 43.01 3.82
413 419 3.944650 ACATTGTATGTGTGTGTGTGTGT 59.055 39.130 0.00 0.00 43.01 3.72
414 420 4.201901 ACATTGTATGTGTGTGTGTGTGTG 60.202 41.667 0.00 0.00 43.01 3.82
415 421 2.979240 TGTATGTGTGTGTGTGTGTGT 58.021 42.857 0.00 0.00 0.00 3.72
416 422 2.675348 TGTATGTGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
417 423 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
418 424 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
419 425 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
420 426 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
421 427 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
422 428 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
423 429 2.031595 GTGTGTGTGTGTGTGTGTTTGA 60.032 45.455 0.00 0.00 0.00 2.69
424 430 2.618709 TGTGTGTGTGTGTGTGTTTGAA 59.381 40.909 0.00 0.00 0.00 2.69
425 431 3.233578 GTGTGTGTGTGTGTGTTTGAAG 58.766 45.455 0.00 0.00 0.00 3.02
426 432 2.881513 TGTGTGTGTGTGTGTTTGAAGT 59.118 40.909 0.00 0.00 0.00 3.01
427 433 3.233578 GTGTGTGTGTGTGTTTGAAGTG 58.766 45.455 0.00 0.00 0.00 3.16
428 434 2.881513 TGTGTGTGTGTGTTTGAAGTGT 59.118 40.909 0.00 0.00 0.00 3.55
429 435 3.058570 TGTGTGTGTGTGTTTGAAGTGTC 60.059 43.478 0.00 0.00 0.00 3.67
430 436 3.058570 GTGTGTGTGTGTTTGAAGTGTCA 60.059 43.478 0.00 0.00 0.00 3.58
431 437 3.188254 TGTGTGTGTGTTTGAAGTGTCAG 59.812 43.478 0.00 0.00 34.49 3.51
432 438 3.188460 GTGTGTGTGTTTGAAGTGTCAGT 59.812 43.478 0.00 0.00 34.49 3.41
433 439 3.188254 TGTGTGTGTTTGAAGTGTCAGTG 59.812 43.478 0.00 0.00 34.49 3.66
434 440 2.161410 TGTGTGTTTGAAGTGTCAGTGC 59.839 45.455 0.00 0.00 34.49 4.40
435 441 2.420022 GTGTGTTTGAAGTGTCAGTGCT 59.580 45.455 0.00 0.00 34.49 4.40
436 442 3.081061 TGTGTTTGAAGTGTCAGTGCTT 58.919 40.909 0.00 0.00 34.49 3.91
437 443 3.126858 TGTGTTTGAAGTGTCAGTGCTTC 59.873 43.478 2.91 2.91 40.90 3.86
438 444 3.375299 GTGTTTGAAGTGTCAGTGCTTCT 59.625 43.478 9.49 0.00 41.05 2.85
439 445 3.374988 TGTTTGAAGTGTCAGTGCTTCTG 59.625 43.478 9.49 3.68 44.85 3.02
440 446 2.988010 TGAAGTGTCAGTGCTTCTGT 57.012 45.000 9.49 0.00 43.97 3.41
441 447 2.554142 TGAAGTGTCAGTGCTTCTGTG 58.446 47.619 9.49 0.00 43.97 3.66
442 448 2.093500 TGAAGTGTCAGTGCTTCTGTGT 60.093 45.455 9.49 0.00 43.97 3.72
443 449 3.132111 TGAAGTGTCAGTGCTTCTGTGTA 59.868 43.478 9.49 0.00 43.97 2.90
444 450 3.377346 AGTGTCAGTGCTTCTGTGTAG 57.623 47.619 8.75 0.00 43.97 2.74
445 451 2.036475 AGTGTCAGTGCTTCTGTGTAGG 59.964 50.000 8.75 0.00 43.97 3.18
446 452 2.035961 GTGTCAGTGCTTCTGTGTAGGA 59.964 50.000 8.75 0.00 43.97 2.94
447 453 2.698274 TGTCAGTGCTTCTGTGTAGGAA 59.302 45.455 8.75 0.00 43.97 3.36
448 454 3.243873 TGTCAGTGCTTCTGTGTAGGAAG 60.244 47.826 8.75 0.00 43.97 3.46
449 455 2.965831 TCAGTGCTTCTGTGTAGGAAGT 59.034 45.455 8.75 0.00 43.97 3.01
450 456 3.005897 TCAGTGCTTCTGTGTAGGAAGTC 59.994 47.826 8.75 0.00 43.97 3.01
451 457 3.006323 CAGTGCTTCTGTGTAGGAAGTCT 59.994 47.826 0.00 0.00 41.36 3.24
452 458 4.218635 CAGTGCTTCTGTGTAGGAAGTCTA 59.781 45.833 0.00 0.00 41.36 2.59
453 459 4.833380 AGTGCTTCTGTGTAGGAAGTCTAA 59.167 41.667 0.00 0.00 41.36 2.10
454 460 5.482175 AGTGCTTCTGTGTAGGAAGTCTAAT 59.518 40.000 0.00 0.00 41.36 1.73
455 461 6.663953 AGTGCTTCTGTGTAGGAAGTCTAATA 59.336 38.462 0.00 0.00 41.36 0.98
456 462 6.975772 GTGCTTCTGTGTAGGAAGTCTAATAG 59.024 42.308 0.00 0.00 41.36 1.73
457 463 6.096987 TGCTTCTGTGTAGGAAGTCTAATAGG 59.903 42.308 0.00 0.00 41.36 2.57
458 464 6.461788 GCTTCTGTGTAGGAAGTCTAATAGGG 60.462 46.154 0.00 0.00 41.36 3.53
459 465 6.088541 TCTGTGTAGGAAGTCTAATAGGGT 57.911 41.667 0.00 0.00 0.00 4.34
460 466 5.892119 TCTGTGTAGGAAGTCTAATAGGGTG 59.108 44.000 0.00 0.00 0.00 4.61
461 467 4.960469 TGTGTAGGAAGTCTAATAGGGTGG 59.040 45.833 0.00 0.00 0.00 4.61
462 468 4.344390 GTGTAGGAAGTCTAATAGGGTGGG 59.656 50.000 0.00 0.00 0.00 4.61
463 469 3.797671 AGGAAGTCTAATAGGGTGGGT 57.202 47.619 0.00 0.00 0.00 4.51
464 470 4.090027 AGGAAGTCTAATAGGGTGGGTT 57.910 45.455 0.00 0.00 0.00 4.11
465 471 4.445564 AGGAAGTCTAATAGGGTGGGTTT 58.554 43.478 0.00 0.00 0.00 3.27
466 472 4.473922 AGGAAGTCTAATAGGGTGGGTTTC 59.526 45.833 0.00 0.00 0.00 2.78
467 473 4.384978 GGAAGTCTAATAGGGTGGGTTTCC 60.385 50.000 0.00 0.00 0.00 3.13
468 474 3.810623 AGTCTAATAGGGTGGGTTTCCA 58.189 45.455 0.00 0.00 41.58 3.53
469 475 4.380791 AGTCTAATAGGGTGGGTTTCCAT 58.619 43.478 0.00 0.00 46.09 3.41
470 476 4.794067 AGTCTAATAGGGTGGGTTTCCATT 59.206 41.667 0.00 0.00 46.09 3.16
471 477 5.255443 AGTCTAATAGGGTGGGTTTCCATTT 59.745 40.000 0.00 0.00 46.09 2.32
472 478 5.593095 GTCTAATAGGGTGGGTTTCCATTTC 59.407 44.000 0.00 0.00 46.09 2.17
473 479 4.692523 AATAGGGTGGGTTTCCATTTCT 57.307 40.909 0.00 0.00 46.09 2.52
474 480 4.692523 ATAGGGTGGGTTTCCATTTCTT 57.307 40.909 0.00 0.00 46.09 2.52
475 481 3.344535 AGGGTGGGTTTCCATTTCTTT 57.655 42.857 0.00 0.00 46.09 2.52
476 482 3.664320 AGGGTGGGTTTCCATTTCTTTT 58.336 40.909 0.00 0.00 46.09 2.27
477 483 3.390967 AGGGTGGGTTTCCATTTCTTTTG 59.609 43.478 0.00 0.00 46.09 2.44
478 484 3.138304 GGTGGGTTTCCATTTCTTTTGC 58.862 45.455 0.00 0.00 46.09 3.68
479 485 3.138304 GTGGGTTTCCATTTCTTTTGCC 58.862 45.455 0.00 0.00 46.09 4.52
480 486 3.044894 TGGGTTTCCATTTCTTTTGCCT 58.955 40.909 0.00 0.00 38.32 4.75
481 487 3.457749 TGGGTTTCCATTTCTTTTGCCTT 59.542 39.130 0.00 0.00 38.32 4.35
482 488 4.080072 TGGGTTTCCATTTCTTTTGCCTTT 60.080 37.500 0.00 0.00 38.32 3.11
483 489 4.515191 GGGTTTCCATTTCTTTTGCCTTTC 59.485 41.667 0.00 0.00 0.00 2.62
484 490 5.122519 GGTTTCCATTTCTTTTGCCTTTCA 58.877 37.500 0.00 0.00 0.00 2.69
485 491 5.764686 GGTTTCCATTTCTTTTGCCTTTCAT 59.235 36.000 0.00 0.00 0.00 2.57
486 492 6.934083 GGTTTCCATTTCTTTTGCCTTTCATA 59.066 34.615 0.00 0.00 0.00 2.15
487 493 7.607607 GGTTTCCATTTCTTTTGCCTTTCATAT 59.392 33.333 0.00 0.00 0.00 1.78
488 494 8.659491 GTTTCCATTTCTTTTGCCTTTCATATC 58.341 33.333 0.00 0.00 0.00 1.63
489 495 7.479352 TCCATTTCTTTTGCCTTTCATATCA 57.521 32.000 0.00 0.00 0.00 2.15
490 496 7.549839 TCCATTTCTTTTGCCTTTCATATCAG 58.450 34.615 0.00 0.00 0.00 2.90
491 497 7.396907 TCCATTTCTTTTGCCTTTCATATCAGA 59.603 33.333 0.00 0.00 0.00 3.27
492 498 8.036575 CCATTTCTTTTGCCTTTCATATCAGAA 58.963 33.333 0.00 0.00 0.00 3.02
493 499 8.866956 CATTTCTTTTGCCTTTCATATCAGAAC 58.133 33.333 0.00 0.00 0.00 3.01
494 500 7.523293 TTCTTTTGCCTTTCATATCAGAACA 57.477 32.000 0.00 0.00 0.00 3.18
495 501 7.523293 TCTTTTGCCTTTCATATCAGAACAA 57.477 32.000 0.00 0.00 0.00 2.83
496 502 8.125978 TCTTTTGCCTTTCATATCAGAACAAT 57.874 30.769 0.00 0.00 0.00 2.71
497 503 8.587608 TCTTTTGCCTTTCATATCAGAACAATT 58.412 29.630 0.00 0.00 0.00 2.32
498 504 8.537049 TTTTGCCTTTCATATCAGAACAATTG 57.463 30.769 3.24 3.24 0.00 2.32
499 505 6.211587 TGCCTTTCATATCAGAACAATTGG 57.788 37.500 10.83 0.00 0.00 3.16
500 506 5.045872 GCCTTTCATATCAGAACAATTGGC 58.954 41.667 10.83 1.25 0.00 4.52
501 507 5.594926 CCTTTCATATCAGAACAATTGGCC 58.405 41.667 10.83 0.00 0.00 5.36
502 508 5.452356 CCTTTCATATCAGAACAATTGGCCC 60.452 44.000 10.83 0.00 0.00 5.80
503 509 3.213506 TCATATCAGAACAATTGGCCCG 58.786 45.455 10.83 0.00 0.00 6.13
504 510 2.051334 TATCAGAACAATTGGCCCGG 57.949 50.000 10.83 0.00 0.00 5.73
505 511 0.684153 ATCAGAACAATTGGCCCGGG 60.684 55.000 19.09 19.09 0.00 5.73
506 512 1.304052 CAGAACAATTGGCCCGGGA 60.304 57.895 29.31 2.74 0.00 5.14
507 513 0.684153 CAGAACAATTGGCCCGGGAT 60.684 55.000 29.31 5.85 0.00 3.85
508 514 0.923358 AGAACAATTGGCCCGGGATA 59.077 50.000 29.31 9.29 0.00 2.59
509 515 1.029681 GAACAATTGGCCCGGGATAC 58.970 55.000 29.31 14.52 0.00 2.24
510 516 0.750182 AACAATTGGCCCGGGATACG 60.750 55.000 29.31 9.25 43.80 3.06
511 517 1.153046 CAATTGGCCCGGGATACGT 60.153 57.895 29.31 1.80 42.24 3.57
512 518 1.153046 AATTGGCCCGGGATACGTG 60.153 57.895 29.31 0.00 42.24 4.49
513 519 1.917336 AATTGGCCCGGGATACGTGT 61.917 55.000 29.31 0.00 42.24 4.49
514 520 1.049855 ATTGGCCCGGGATACGTGTA 61.050 55.000 29.31 0.00 42.24 2.90
515 521 1.263342 TTGGCCCGGGATACGTGTAA 61.263 55.000 29.31 3.28 42.24 2.41
516 522 1.068585 GGCCCGGGATACGTGTAAG 59.931 63.158 29.31 0.00 42.24 2.34
517 523 1.593479 GCCCGGGATACGTGTAAGC 60.593 63.158 29.31 0.00 42.24 3.09
518 524 2.024590 GCCCGGGATACGTGTAAGCT 62.025 60.000 29.31 0.00 42.24 3.74
519 525 0.462789 CCCGGGATACGTGTAAGCTT 59.537 55.000 18.48 3.48 42.24 3.74
520 526 1.134610 CCCGGGATACGTGTAAGCTTT 60.135 52.381 18.48 0.00 42.24 3.51
521 527 1.931172 CCGGGATACGTGTAAGCTTTG 59.069 52.381 3.20 0.00 42.24 2.77
522 528 2.613691 CGGGATACGTGTAAGCTTTGT 58.386 47.619 3.20 1.27 37.93 2.83
523 529 2.601763 CGGGATACGTGTAAGCTTTGTC 59.398 50.000 3.20 0.00 37.93 3.18
524 530 2.934553 GGGATACGTGTAAGCTTTGTCC 59.065 50.000 3.20 3.08 37.60 4.02
525 531 3.369157 GGGATACGTGTAAGCTTTGTCCT 60.369 47.826 3.20 0.00 37.60 3.85
526 532 3.617263 GGATACGTGTAAGCTTTGTCCTG 59.383 47.826 3.20 0.00 0.00 3.86
527 533 2.902705 ACGTGTAAGCTTTGTCCTGA 57.097 45.000 3.20 0.00 0.00 3.86
528 534 2.480845 ACGTGTAAGCTTTGTCCTGAC 58.519 47.619 3.20 0.00 0.00 3.51
529 535 1.455786 CGTGTAAGCTTTGTCCTGACG 59.544 52.381 3.20 0.00 0.00 4.35
530 536 2.750948 GTGTAAGCTTTGTCCTGACGA 58.249 47.619 3.20 0.00 0.00 4.20
531 537 2.731976 GTGTAAGCTTTGTCCTGACGAG 59.268 50.000 3.20 0.00 0.00 4.18
532 538 2.288825 TGTAAGCTTTGTCCTGACGAGG 60.289 50.000 3.20 0.00 41.39 4.63
541 547 1.996798 TCCTGACGAGGAAGTTGACT 58.003 50.000 0.00 0.00 46.19 3.41
542 548 1.613925 TCCTGACGAGGAAGTTGACTG 59.386 52.381 0.00 0.00 46.19 3.51
543 549 1.341531 CCTGACGAGGAAGTTGACTGT 59.658 52.381 0.00 0.00 42.93 3.55
544 550 2.398498 CTGACGAGGAAGTTGACTGTG 58.602 52.381 0.00 0.00 0.00 3.66
545 551 1.754803 TGACGAGGAAGTTGACTGTGT 59.245 47.619 0.00 0.00 0.00 3.72
546 552 2.128035 GACGAGGAAGTTGACTGTGTG 58.872 52.381 0.00 0.00 0.00 3.82
547 553 0.861837 CGAGGAAGTTGACTGTGTGC 59.138 55.000 0.00 0.00 0.00 4.57
548 554 0.861837 GAGGAAGTTGACTGTGTGCG 59.138 55.000 0.00 0.00 0.00 5.34
549 555 0.178068 AGGAAGTTGACTGTGTGCGT 59.822 50.000 0.00 0.00 0.00 5.24
550 556 0.582005 GGAAGTTGACTGTGTGCGTC 59.418 55.000 0.00 0.00 0.00 5.19
551 557 0.582005 GAAGTTGACTGTGTGCGTCC 59.418 55.000 0.00 0.00 0.00 4.79
552 558 0.178068 AAGTTGACTGTGTGCGTCCT 59.822 50.000 0.00 0.00 0.00 3.85
553 559 0.249489 AGTTGACTGTGTGCGTCCTC 60.249 55.000 0.00 0.00 0.00 3.71
554 560 0.529773 GTTGACTGTGTGCGTCCTCA 60.530 55.000 0.00 0.00 0.00 3.86
555 561 0.249447 TTGACTGTGTGCGTCCTCAG 60.249 55.000 0.00 4.65 0.00 3.35
556 562 1.364171 GACTGTGTGCGTCCTCAGT 59.636 57.895 9.79 9.79 42.66 3.41
557 563 0.249489 GACTGTGTGCGTCCTCAGTT 60.249 55.000 10.87 0.00 40.53 3.16
558 564 0.178068 ACTGTGTGCGTCCTCAGTTT 59.822 50.000 5.67 0.00 37.81 2.66
559 565 1.411246 ACTGTGTGCGTCCTCAGTTTA 59.589 47.619 5.67 0.00 37.81 2.01
560 566 2.037251 ACTGTGTGCGTCCTCAGTTTAT 59.963 45.455 5.67 0.00 37.81 1.40
561 567 2.668457 CTGTGTGCGTCCTCAGTTTATC 59.332 50.000 0.00 0.00 0.00 1.75
562 568 2.036604 TGTGTGCGTCCTCAGTTTATCA 59.963 45.455 0.00 0.00 0.00 2.15
563 569 3.262420 GTGTGCGTCCTCAGTTTATCAT 58.738 45.455 0.00 0.00 0.00 2.45
564 570 4.081917 TGTGTGCGTCCTCAGTTTATCATA 60.082 41.667 0.00 0.00 0.00 2.15
565 571 4.868171 GTGTGCGTCCTCAGTTTATCATAA 59.132 41.667 0.00 0.00 0.00 1.90
566 572 5.523916 GTGTGCGTCCTCAGTTTATCATAAT 59.476 40.000 0.00 0.00 0.00 1.28
567 573 5.753438 TGTGCGTCCTCAGTTTATCATAATC 59.247 40.000 0.00 0.00 0.00 1.75
568 574 4.982295 TGCGTCCTCAGTTTATCATAATCG 59.018 41.667 0.00 0.00 0.00 3.34
569 575 4.386049 GCGTCCTCAGTTTATCATAATCGG 59.614 45.833 0.00 0.00 0.00 4.18
570 576 4.386049 CGTCCTCAGTTTATCATAATCGGC 59.614 45.833 0.00 0.00 0.00 5.54
571 577 5.542779 GTCCTCAGTTTATCATAATCGGCT 58.457 41.667 0.00 0.00 0.00 5.52
572 578 5.406780 GTCCTCAGTTTATCATAATCGGCTG 59.593 44.000 0.00 0.00 0.00 4.85
573 579 4.153117 CCTCAGTTTATCATAATCGGCTGC 59.847 45.833 0.00 0.00 0.00 5.25
574 580 4.702831 TCAGTTTATCATAATCGGCTGCA 58.297 39.130 0.50 0.00 0.00 4.41
575 581 5.308014 TCAGTTTATCATAATCGGCTGCAT 58.692 37.500 0.50 0.00 0.00 3.96
576 582 5.409520 TCAGTTTATCATAATCGGCTGCATC 59.590 40.000 0.50 0.00 0.00 3.91
580 586 4.761235 ATCATAATCGGCTGCATCTTTG 57.239 40.909 0.50 0.00 0.00 2.77
595 601 7.201857 GCTGCATCTTTGAAGGGTTAATTATCT 60.202 37.037 0.00 0.00 0.00 1.98
640 646 2.158682 TGCTCAGTTTTGCCCTCAGTTA 60.159 45.455 0.00 0.00 0.00 2.24
649 655 1.135199 TGCCCTCAGTTACGAATCGTC 60.135 52.381 13.00 0.00 41.54 4.20
736 742 1.422402 ACCTTTTGACTCGGCCCTTAA 59.578 47.619 0.00 0.00 0.00 1.85
760 766 2.276116 GGACCAGACGGCAGAGACA 61.276 63.158 0.00 0.00 34.57 3.41
813 834 0.467290 GTGGGACCCAACAAAGAGCA 60.467 55.000 16.98 0.00 34.18 4.26
815 836 1.527433 GGGACCCAACAAAGAGCAGC 61.527 60.000 5.33 0.00 0.00 5.25
894 934 3.134792 GGCGACAGAGAGAGCGGA 61.135 66.667 0.00 0.00 0.00 5.54
901 941 1.747367 AGAGAGAGCGGACGACAGG 60.747 63.158 0.00 0.00 0.00 4.00
927 967 4.778415 CGGTGACCACGGCGAGAG 62.778 72.222 16.62 3.65 0.00 3.20
941 981 1.522806 GAGAGAGAGAGAGCGGCGA 60.523 63.158 12.98 0.00 0.00 5.54
942 982 1.078072 AGAGAGAGAGAGCGGCGAA 60.078 57.895 12.98 0.00 0.00 4.70
1050 1090 2.672996 AAGCAAAGCCCGACGCAT 60.673 55.556 0.00 0.00 41.38 4.73
1137 1177 1.641577 CGAAGAACCAGAATCGTCCC 58.358 55.000 0.00 0.00 0.00 4.46
1200 1240 3.585856 CCATTTTCGTGGTCGGGG 58.414 61.111 0.00 0.00 37.69 5.73
1270 1310 3.140325 TCTTTCTTTGGGTCGATGCTT 57.860 42.857 0.00 0.00 0.00 3.91
1329 1580 1.401552 GAAGAATGGTTGCGCATGCTA 59.598 47.619 12.75 5.89 43.34 3.49
1402 1710 1.697284 AGCACACACTGACAGAGAGA 58.303 50.000 10.08 0.00 0.00 3.10
1518 1838 6.468333 TTTGTAGGTATGGTAATCGCACTA 57.532 37.500 0.00 0.00 0.00 2.74
1536 1857 6.205853 TCGCACTAGGTGTAATGTTGAAATTT 59.794 34.615 0.00 0.00 35.75 1.82
1614 1935 5.523438 TCACCTTGTTTAAATGTTGGTCC 57.477 39.130 0.00 0.00 0.00 4.46
1620 1941 6.821160 CCTTGTTTAAATGTTGGTCCAAGTTT 59.179 34.615 3.96 11.62 0.00 2.66
1713 2036 8.355169 TGAGGAATTCAGAAACTTTTGATCAAG 58.645 33.333 8.41 0.11 0.00 3.02
1727 2050 3.693807 TGATCAAGGAAATGCAGCTCTT 58.306 40.909 0.00 0.00 0.00 2.85
1744 2068 2.483491 CTCTTTGCTCTGCCTTTCTGTC 59.517 50.000 0.00 0.00 0.00 3.51
1745 2069 2.158769 TCTTTGCTCTGCCTTTCTGTCA 60.159 45.455 0.00 0.00 0.00 3.58
1874 2201 5.538118 TGAGATCTCTTGCGTGTTTTTCTA 58.462 37.500 22.95 0.00 0.00 2.10
1888 2215 7.097006 GCGTGTTTTTCTATTTTCTGTTCTGAC 60.097 37.037 0.00 0.00 0.00 3.51
2078 2415 5.927819 ACCAAAATGTCATGGAAAATGTGT 58.072 33.333 0.00 0.00 39.12 3.72
2244 2582 4.025401 GCGTGGGTTTGAGGCGTG 62.025 66.667 0.00 0.00 0.00 5.34
2247 2585 0.881159 CGTGGGTTTGAGGCGTGTAA 60.881 55.000 0.00 0.00 0.00 2.41
2348 2687 8.154203 CCATGACTTGGTTTAGGGTTTAAAAAT 58.846 33.333 0.00 0.00 40.99 1.82
2370 2709 8.436046 AAATGCATGTTTGTACTGAATGTTTT 57.564 26.923 0.00 0.00 0.00 2.43
2378 2717 3.623510 TGTACTGAATGTTTTCACACGCA 59.376 39.130 0.00 0.00 36.94 5.24
2454 2796 3.505680 TGTTTGTACTGCCACATGATTCC 59.494 43.478 0.00 0.00 0.00 3.01
2455 2797 3.431673 TTGTACTGCCACATGATTCCA 57.568 42.857 0.00 0.00 0.00 3.53
2488 2830 5.479027 GGCACTTGGTTTAGGATTTAAAGGA 59.521 40.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 112 1.093159 GATGCAGACCAGAGGCAAAG 58.907 55.000 0.00 0.00 41.43 2.77
108 113 0.401356 TGATGCAGACCAGAGGCAAA 59.599 50.000 0.00 0.00 41.43 3.68
123 128 7.117523 GCCTATAAAGACACTAGAAGCATGATG 59.882 40.741 0.00 0.00 0.00 3.07
132 137 5.955959 TCAACCTGCCTATAAAGACACTAGA 59.044 40.000 0.00 0.00 0.00 2.43
133 138 6.222038 TCAACCTGCCTATAAAGACACTAG 57.778 41.667 0.00 0.00 0.00 2.57
134 139 6.156256 ACATCAACCTGCCTATAAAGACACTA 59.844 38.462 0.00 0.00 0.00 2.74
136 141 5.186198 ACATCAACCTGCCTATAAAGACAC 58.814 41.667 0.00 0.00 0.00 3.67
137 142 5.435686 ACATCAACCTGCCTATAAAGACA 57.564 39.130 0.00 0.00 0.00 3.41
138 143 6.456988 CGAAACATCAACCTGCCTATAAAGAC 60.457 42.308 0.00 0.00 0.00 3.01
144 149 3.627395 TCGAAACATCAACCTGCCTAT 57.373 42.857 0.00 0.00 0.00 2.57
145 150 3.410631 TTCGAAACATCAACCTGCCTA 57.589 42.857 0.00 0.00 0.00 3.93
154 159 5.405935 TCTCTCCTGATTTCGAAACATCA 57.594 39.130 13.81 12.94 0.00 3.07
163 168 6.569418 GCAAGGACTTTTTCTCTCCTGATTTC 60.569 42.308 0.00 0.00 34.46 2.17
170 176 3.823304 ACATGCAAGGACTTTTTCTCTCC 59.177 43.478 0.00 0.00 0.00 3.71
196 202 8.812972 ACTTCTGGTATGTGTCATCTAAAAGTA 58.187 33.333 0.00 0.00 0.00 2.24
208 214 3.521727 AGGGAAGACTTCTGGTATGTGT 58.478 45.455 14.72 0.00 0.00 3.72
213 219 3.726557 TCGTAGGGAAGACTTCTGGTA 57.273 47.619 14.72 2.10 0.00 3.25
214 220 2.599408 TCGTAGGGAAGACTTCTGGT 57.401 50.000 14.72 2.98 0.00 4.00
215 221 3.955650 TTTCGTAGGGAAGACTTCTGG 57.044 47.619 14.72 1.18 35.70 3.86
216 222 5.479306 TGATTTTCGTAGGGAAGACTTCTG 58.521 41.667 14.72 1.36 35.70 3.02
217 223 5.740290 TGATTTTCGTAGGGAAGACTTCT 57.260 39.130 14.72 0.00 35.70 2.85
218 224 5.875359 ACATGATTTTCGTAGGGAAGACTTC 59.125 40.000 6.66 6.66 35.70 3.01
219 225 5.643777 CACATGATTTTCGTAGGGAAGACTT 59.356 40.000 0.00 0.00 35.70 3.01
220 226 5.178797 CACATGATTTTCGTAGGGAAGACT 58.821 41.667 0.00 0.00 35.70 3.24
221 227 4.332819 CCACATGATTTTCGTAGGGAAGAC 59.667 45.833 0.00 0.00 35.70 3.01
222 228 4.513442 CCACATGATTTTCGTAGGGAAGA 58.487 43.478 0.00 0.00 35.70 2.87
223 229 3.065371 GCCACATGATTTTCGTAGGGAAG 59.935 47.826 0.00 0.00 35.70 3.46
224 230 3.013921 GCCACATGATTTTCGTAGGGAA 58.986 45.455 0.00 0.00 0.00 3.97
225 231 2.026729 TGCCACATGATTTTCGTAGGGA 60.027 45.455 0.00 0.00 0.00 4.20
226 232 2.364632 TGCCACATGATTTTCGTAGGG 58.635 47.619 0.00 0.00 0.00 3.53
227 233 4.142403 ACAATGCCACATGATTTTCGTAGG 60.142 41.667 0.00 0.00 0.00 3.18
228 234 4.794762 CACAATGCCACATGATTTTCGTAG 59.205 41.667 0.00 0.00 0.00 3.51
229 235 4.457257 TCACAATGCCACATGATTTTCGTA 59.543 37.500 0.00 0.00 0.00 3.43
230 236 3.255395 TCACAATGCCACATGATTTTCGT 59.745 39.130 0.00 0.00 0.00 3.85
231 237 3.609373 GTCACAATGCCACATGATTTTCG 59.391 43.478 0.00 0.00 0.00 3.46
232 238 3.609373 CGTCACAATGCCACATGATTTTC 59.391 43.478 0.00 0.00 0.00 2.29
233 239 3.577667 CGTCACAATGCCACATGATTTT 58.422 40.909 0.00 0.00 0.00 1.82
234 240 2.671914 GCGTCACAATGCCACATGATTT 60.672 45.455 0.00 0.00 0.00 2.17
235 241 1.135315 GCGTCACAATGCCACATGATT 60.135 47.619 0.00 0.00 0.00 2.57
236 242 0.452987 GCGTCACAATGCCACATGAT 59.547 50.000 0.00 0.00 0.00 2.45
237 243 1.875262 GCGTCACAATGCCACATGA 59.125 52.632 0.00 0.00 0.00 3.07
238 244 4.463597 GCGTCACAATGCCACATG 57.536 55.556 0.00 0.00 0.00 3.21
251 257 4.620937 GATAAGGGCCGGGGCGTC 62.621 72.222 16.51 7.15 43.06 5.19
253 259 2.047213 TAAAGATAAGGGCCGGGGCG 62.047 60.000 15.03 0.00 43.06 6.13
254 260 0.250770 CTAAAGATAAGGGCCGGGGC 60.251 60.000 13.01 13.01 41.06 5.80
255 261 1.430992 TCTAAAGATAAGGGCCGGGG 58.569 55.000 2.18 0.00 0.00 5.73
256 262 3.570912 TTTCTAAAGATAAGGGCCGGG 57.429 47.619 2.18 0.00 0.00 5.73
257 263 5.359860 ACAAATTTCTAAAGATAAGGGCCGG 59.640 40.000 0.00 0.00 0.00 6.13
258 264 6.094881 TCACAAATTTCTAAAGATAAGGGCCG 59.905 38.462 0.00 0.00 0.00 6.13
259 265 7.404671 TCACAAATTTCTAAAGATAAGGGCC 57.595 36.000 0.00 0.00 0.00 5.80
260 266 8.470002 ACATCACAAATTTCTAAAGATAAGGGC 58.530 33.333 0.00 0.00 0.00 5.19
261 267 9.793252 CACATCACAAATTTCTAAAGATAAGGG 57.207 33.333 0.00 0.00 0.00 3.95
270 276 9.814899 ACATGAAAACACATCACAAATTTCTAA 57.185 25.926 0.00 0.00 0.00 2.10
271 277 9.462174 GACATGAAAACACATCACAAATTTCTA 57.538 29.630 0.00 0.00 0.00 2.10
272 278 8.199449 AGACATGAAAACACATCACAAATTTCT 58.801 29.630 0.00 0.00 0.00 2.52
273 279 8.270799 CAGACATGAAAACACATCACAAATTTC 58.729 33.333 0.00 0.00 0.00 2.17
274 280 7.765360 ACAGACATGAAAACACATCACAAATTT 59.235 29.630 0.00 0.00 0.00 1.82
275 281 7.223193 CACAGACATGAAAACACATCACAAATT 59.777 33.333 0.00 0.00 0.00 1.82
276 282 6.698329 CACAGACATGAAAACACATCACAAAT 59.302 34.615 0.00 0.00 0.00 2.32
277 283 6.035217 CACAGACATGAAAACACATCACAAA 58.965 36.000 0.00 0.00 0.00 2.83
278 284 5.125257 ACACAGACATGAAAACACATCACAA 59.875 36.000 0.00 0.00 0.00 3.33
279 285 4.639755 ACACAGACATGAAAACACATCACA 59.360 37.500 0.00 0.00 0.00 3.58
280 286 5.173774 ACACAGACATGAAAACACATCAC 57.826 39.130 0.00 0.00 0.00 3.06
281 287 5.125257 ACAACACAGACATGAAAACACATCA 59.875 36.000 0.00 0.00 0.00 3.07
282 288 5.456497 CACAACACAGACATGAAAACACATC 59.544 40.000 0.00 0.00 0.00 3.06
283 289 5.125257 TCACAACACAGACATGAAAACACAT 59.875 36.000 0.00 0.00 0.00 3.21
284 290 4.457257 TCACAACACAGACATGAAAACACA 59.543 37.500 0.00 0.00 0.00 3.72
285 291 4.980590 TCACAACACAGACATGAAAACAC 58.019 39.130 0.00 0.00 0.00 3.32
286 292 5.125257 ACATCACAACACAGACATGAAAACA 59.875 36.000 0.00 0.00 0.00 2.83
287 293 5.581605 ACATCACAACACAGACATGAAAAC 58.418 37.500 0.00 0.00 0.00 2.43
288 294 5.833406 ACATCACAACACAGACATGAAAA 57.167 34.783 0.00 0.00 0.00 2.29
289 295 5.819901 TGTACATCACAACACAGACATGAAA 59.180 36.000 0.00 0.00 32.95 2.69
290 296 5.363939 TGTACATCACAACACAGACATGAA 58.636 37.500 0.00 0.00 32.95 2.57
291 297 4.954875 TGTACATCACAACACAGACATGA 58.045 39.130 0.00 0.00 32.95 3.07
292 298 5.868043 ATGTACATCACAACACAGACATG 57.132 39.130 1.41 0.00 41.55 3.21
293 299 6.070824 TCCTATGTACATCACAACACAGACAT 60.071 38.462 12.68 0.00 41.55 3.06
294 300 5.245075 TCCTATGTACATCACAACACAGACA 59.755 40.000 12.68 0.00 41.55 3.41
295 301 5.720202 TCCTATGTACATCACAACACAGAC 58.280 41.667 12.68 0.00 41.55 3.51
296 302 5.624509 GCTCCTATGTACATCACAACACAGA 60.625 44.000 12.68 0.00 41.55 3.41
297 303 4.568359 GCTCCTATGTACATCACAACACAG 59.432 45.833 12.68 1.20 41.55 3.66
298 304 4.020662 TGCTCCTATGTACATCACAACACA 60.021 41.667 12.68 0.96 41.55 3.72
299 305 4.503910 TGCTCCTATGTACATCACAACAC 58.496 43.478 12.68 0.00 41.55 3.32
300 306 4.817318 TGCTCCTATGTACATCACAACA 57.183 40.909 12.68 4.24 41.55 3.33
301 307 5.359756 TCATGCTCCTATGTACATCACAAC 58.640 41.667 12.68 1.49 41.55 3.32
302 308 5.612725 TCATGCTCCTATGTACATCACAA 57.387 39.130 12.68 0.00 41.55 3.33
303 309 5.813513 ATCATGCTCCTATGTACATCACA 57.186 39.130 12.68 5.24 42.69 3.58
304 310 6.484643 ACAAATCATGCTCCTATGTACATCAC 59.515 38.462 12.68 0.00 0.00 3.06
305 311 6.594744 ACAAATCATGCTCCTATGTACATCA 58.405 36.000 12.68 4.02 0.00 3.07
306 312 7.443575 AGAACAAATCATGCTCCTATGTACATC 59.556 37.037 12.68 0.00 0.00 3.06
307 313 7.228108 CAGAACAAATCATGCTCCTATGTACAT 59.772 37.037 13.93 13.93 0.00 2.29
308 314 6.539826 CAGAACAAATCATGCTCCTATGTACA 59.460 38.462 0.00 0.00 0.00 2.90
309 315 6.017605 CCAGAACAAATCATGCTCCTATGTAC 60.018 42.308 0.00 0.00 0.00 2.90
310 316 6.057533 CCAGAACAAATCATGCTCCTATGTA 58.942 40.000 0.00 0.00 0.00 2.29
311 317 4.885907 CCAGAACAAATCATGCTCCTATGT 59.114 41.667 0.00 0.00 0.00 2.29
312 318 4.261489 GCCAGAACAAATCATGCTCCTATG 60.261 45.833 0.00 0.00 0.00 2.23
313 319 3.887716 GCCAGAACAAATCATGCTCCTAT 59.112 43.478 0.00 0.00 0.00 2.57
314 320 3.282021 GCCAGAACAAATCATGCTCCTA 58.718 45.455 0.00 0.00 0.00 2.94
315 321 2.097825 GCCAGAACAAATCATGCTCCT 58.902 47.619 0.00 0.00 0.00 3.69
316 322 1.820519 TGCCAGAACAAATCATGCTCC 59.179 47.619 0.00 0.00 0.00 4.70
317 323 2.490903 AGTGCCAGAACAAATCATGCTC 59.509 45.455 0.00 0.00 0.00 4.26
318 324 2.522185 AGTGCCAGAACAAATCATGCT 58.478 42.857 0.00 0.00 0.00 3.79
319 325 3.248266 GAAGTGCCAGAACAAATCATGC 58.752 45.455 0.00 0.00 0.00 4.06
320 326 4.482386 CTGAAGTGCCAGAACAAATCATG 58.518 43.478 0.00 0.00 36.29 3.07
321 327 3.508793 CCTGAAGTGCCAGAACAAATCAT 59.491 43.478 0.00 0.00 36.29 2.45
322 328 2.886523 CCTGAAGTGCCAGAACAAATCA 59.113 45.455 0.00 0.00 36.29 2.57
323 329 2.352127 GCCTGAAGTGCCAGAACAAATC 60.352 50.000 0.00 0.00 36.29 2.17
324 330 1.615392 GCCTGAAGTGCCAGAACAAAT 59.385 47.619 0.00 0.00 36.29 2.32
325 331 1.032014 GCCTGAAGTGCCAGAACAAA 58.968 50.000 0.00 0.00 36.29 2.83
326 332 0.106769 TGCCTGAAGTGCCAGAACAA 60.107 50.000 0.00 0.00 36.29 2.83
327 333 0.111061 ATGCCTGAAGTGCCAGAACA 59.889 50.000 0.00 0.00 36.29 3.18
328 334 1.251251 AATGCCTGAAGTGCCAGAAC 58.749 50.000 0.00 0.00 36.29 3.01
329 335 2.715046 CTAATGCCTGAAGTGCCAGAA 58.285 47.619 0.00 0.00 36.29 3.02
330 336 1.679944 GCTAATGCCTGAAGTGCCAGA 60.680 52.381 0.00 0.00 36.29 3.86
331 337 0.737219 GCTAATGCCTGAAGTGCCAG 59.263 55.000 0.00 0.00 0.00 4.85
332 338 0.038021 TGCTAATGCCTGAAGTGCCA 59.962 50.000 0.00 0.00 38.71 4.92
333 339 0.453390 GTGCTAATGCCTGAAGTGCC 59.547 55.000 0.00 0.00 38.71 5.01
334 340 0.097674 CGTGCTAATGCCTGAAGTGC 59.902 55.000 0.00 0.00 38.71 4.40
335 341 0.097674 GCGTGCTAATGCCTGAAGTG 59.902 55.000 0.00 0.00 38.71 3.16
336 342 2.471255 GCGTGCTAATGCCTGAAGT 58.529 52.632 0.00 0.00 38.71 3.01
343 349 4.330074 CCTGTATTATAGGCGTGCTAATGC 59.670 45.833 0.00 0.00 37.61 3.56
344 350 5.479306 ACCTGTATTATAGGCGTGCTAATG 58.521 41.667 6.40 0.00 38.96 1.90
345 351 5.480772 AGACCTGTATTATAGGCGTGCTAAT 59.519 40.000 6.40 0.00 38.96 1.73
346 352 4.831155 AGACCTGTATTATAGGCGTGCTAA 59.169 41.667 6.40 0.00 38.96 3.09
347 353 4.404640 AGACCTGTATTATAGGCGTGCTA 58.595 43.478 6.40 0.00 38.96 3.49
348 354 3.231818 AGACCTGTATTATAGGCGTGCT 58.768 45.455 6.40 0.00 38.96 4.40
349 355 3.662247 AGACCTGTATTATAGGCGTGC 57.338 47.619 6.40 0.00 38.96 5.34
350 356 5.196341 TCAAGACCTGTATTATAGGCGTG 57.804 43.478 6.40 7.97 38.96 5.34
351 357 4.894114 ACTCAAGACCTGTATTATAGGCGT 59.106 41.667 6.40 0.00 38.96 5.68
352 358 5.241949 AGACTCAAGACCTGTATTATAGGCG 59.758 44.000 6.40 0.00 38.96 5.52
353 359 6.658188 AGACTCAAGACCTGTATTATAGGC 57.342 41.667 6.40 0.68 38.96 3.93
354 360 8.693120 TGTAGACTCAAGACCTGTATTATAGG 57.307 38.462 5.02 5.02 41.22 2.57
357 363 9.036980 ACTTTGTAGACTCAAGACCTGTATTAT 57.963 33.333 0.00 0.00 0.00 1.28
358 364 8.304596 CACTTTGTAGACTCAAGACCTGTATTA 58.695 37.037 0.00 0.00 0.00 0.98
359 365 7.155328 CACTTTGTAGACTCAAGACCTGTATT 58.845 38.462 0.00 0.00 0.00 1.89
360 366 6.267928 ACACTTTGTAGACTCAAGACCTGTAT 59.732 38.462 0.00 0.00 0.00 2.29
361 367 5.597182 ACACTTTGTAGACTCAAGACCTGTA 59.403 40.000 0.00 0.00 0.00 2.74
362 368 4.406003 ACACTTTGTAGACTCAAGACCTGT 59.594 41.667 0.00 0.00 0.00 4.00
363 369 4.950050 ACACTTTGTAGACTCAAGACCTG 58.050 43.478 0.00 0.00 0.00 4.00
364 370 4.649674 TGACACTTTGTAGACTCAAGACCT 59.350 41.667 0.00 0.00 0.00 3.85
365 371 4.945246 TGACACTTTGTAGACTCAAGACC 58.055 43.478 0.00 0.00 0.00 3.85
366 372 9.291664 GTATATGACACTTTGTAGACTCAAGAC 57.708 37.037 0.00 0.00 0.00 3.01
367 373 9.020731 TGTATATGACACTTTGTAGACTCAAGA 57.979 33.333 0.00 0.00 31.20 3.02
368 374 9.809096 ATGTATATGACACTTTGTAGACTCAAG 57.191 33.333 0.00 0.00 42.17 3.02
370 376 9.586435 CAATGTATATGACACTTTGTAGACTCA 57.414 33.333 0.00 0.00 42.17 3.41
371 377 9.587772 ACAATGTATATGACACTTTGTAGACTC 57.412 33.333 6.59 0.00 42.17 3.36
377 383 9.448438 ACACATACAATGTATATGACACTTTGT 57.552 29.630 17.44 11.13 42.70 2.83
378 384 9.706846 CACACATACAATGTATATGACACTTTG 57.293 33.333 17.44 1.70 42.70 2.77
379 385 9.448438 ACACACATACAATGTATATGACACTTT 57.552 29.630 17.44 0.00 42.70 2.66
380 386 8.882736 CACACACATACAATGTATATGACACTT 58.117 33.333 17.44 0.00 42.70 3.16
381 387 8.040727 ACACACACATACAATGTATATGACACT 58.959 33.333 17.44 0.00 42.70 3.55
382 388 8.116136 CACACACACATACAATGTATATGACAC 58.884 37.037 17.44 0.00 42.70 3.67
383 389 7.821846 ACACACACACATACAATGTATATGACA 59.178 33.333 17.44 0.00 42.70 3.58
384 390 8.116136 CACACACACACATACAATGTATATGAC 58.884 37.037 17.44 0.00 42.70 3.06
385 391 7.821846 ACACACACACACATACAATGTATATGA 59.178 33.333 17.44 0.00 42.70 2.15
386 392 7.904461 CACACACACACACATACAATGTATATG 59.096 37.037 9.86 9.86 42.70 1.78
387 393 7.606073 ACACACACACACACATACAATGTATAT 59.394 33.333 5.49 0.00 42.70 0.86
388 394 6.931840 ACACACACACACACATACAATGTATA 59.068 34.615 5.49 0.00 42.70 1.47
389 395 5.762711 ACACACACACACACATACAATGTAT 59.237 36.000 0.00 0.00 42.70 2.29
390 396 5.007136 CACACACACACACACATACAATGTA 59.993 40.000 0.00 0.00 42.70 2.29
391 397 3.944650 ACACACACACACACATACAATGT 59.055 39.130 0.00 0.00 46.22 2.71
392 398 4.201901 ACACACACACACACACATACAATG 60.202 41.667 0.00 0.00 0.00 2.82
393 399 3.944650 ACACACACACACACACATACAAT 59.055 39.130 0.00 0.00 0.00 2.71
394 400 3.126000 CACACACACACACACACATACAA 59.874 43.478 0.00 0.00 0.00 2.41
395 401 2.675348 CACACACACACACACACATACA 59.325 45.455 0.00 0.00 0.00 2.29
396 402 2.675844 ACACACACACACACACACATAC 59.324 45.455 0.00 0.00 0.00 2.39
397 403 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
398 404 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
399 405 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
400 406 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
401 407 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
402 408 2.031595 TCAAACACACACACACACACAC 60.032 45.455 0.00 0.00 0.00 3.82
403 409 2.222027 TCAAACACACACACACACACA 58.778 42.857 0.00 0.00 0.00 3.72
404 410 2.979401 TCAAACACACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
405 411 2.881513 ACTTCAAACACACACACACACA 59.118 40.909 0.00 0.00 0.00 3.72
406 412 3.233578 CACTTCAAACACACACACACAC 58.766 45.455 0.00 0.00 0.00 3.82
407 413 2.881513 ACACTTCAAACACACACACACA 59.118 40.909 0.00 0.00 0.00 3.72
408 414 3.058570 TGACACTTCAAACACACACACAC 60.059 43.478 0.00 0.00 0.00 3.82
409 415 3.142174 TGACACTTCAAACACACACACA 58.858 40.909 0.00 0.00 0.00 3.72
410 416 3.188460 ACTGACACTTCAAACACACACAC 59.812 43.478 0.00 0.00 0.00 3.82
411 417 3.188254 CACTGACACTTCAAACACACACA 59.812 43.478 0.00 0.00 0.00 3.72
412 418 3.747193 CACTGACACTTCAAACACACAC 58.253 45.455 0.00 0.00 0.00 3.82
413 419 2.161410 GCACTGACACTTCAAACACACA 59.839 45.455 0.00 0.00 0.00 3.72
414 420 2.420022 AGCACTGACACTTCAAACACAC 59.580 45.455 0.00 0.00 0.00 3.82
415 421 2.710377 AGCACTGACACTTCAAACACA 58.290 42.857 0.00 0.00 0.00 3.72
416 422 3.375299 AGAAGCACTGACACTTCAAACAC 59.625 43.478 5.63 0.00 43.84 3.32
417 423 3.609853 AGAAGCACTGACACTTCAAACA 58.390 40.909 5.63 0.00 43.84 2.83
430 436 3.235200 AGACTTCCTACACAGAAGCACT 58.765 45.455 0.56 0.00 43.75 4.40
431 437 3.669251 AGACTTCCTACACAGAAGCAC 57.331 47.619 0.56 0.00 43.75 4.40
432 438 6.096987 CCTATTAGACTTCCTACACAGAAGCA 59.903 42.308 0.56 0.00 43.75 3.91
433 439 6.461788 CCCTATTAGACTTCCTACACAGAAGC 60.462 46.154 0.56 0.00 43.75 3.86
434 440 6.608002 ACCCTATTAGACTTCCTACACAGAAG 59.392 42.308 0.00 0.00 45.12 2.85
435 441 6.380274 CACCCTATTAGACTTCCTACACAGAA 59.620 42.308 0.00 0.00 0.00 3.02
436 442 5.892119 CACCCTATTAGACTTCCTACACAGA 59.108 44.000 0.00 0.00 0.00 3.41
437 443 5.069251 CCACCCTATTAGACTTCCTACACAG 59.931 48.000 0.00 0.00 0.00 3.66
438 444 4.960469 CCACCCTATTAGACTTCCTACACA 59.040 45.833 0.00 0.00 0.00 3.72
439 445 4.344390 CCCACCCTATTAGACTTCCTACAC 59.656 50.000 0.00 0.00 0.00 2.90
440 446 4.015918 ACCCACCCTATTAGACTTCCTACA 60.016 45.833 0.00 0.00 0.00 2.74
441 447 4.554683 ACCCACCCTATTAGACTTCCTAC 58.445 47.826 0.00 0.00 0.00 3.18
442 448 4.913154 ACCCACCCTATTAGACTTCCTA 57.087 45.455 0.00 0.00 0.00 2.94
443 449 3.797671 ACCCACCCTATTAGACTTCCT 57.202 47.619 0.00 0.00 0.00 3.36
444 450 4.384978 GGAAACCCACCCTATTAGACTTCC 60.385 50.000 0.00 0.00 0.00 3.46
445 451 4.226620 TGGAAACCCACCCTATTAGACTTC 59.773 45.833 0.00 0.00 0.00 3.01
446 452 4.180723 TGGAAACCCACCCTATTAGACTT 58.819 43.478 0.00 0.00 0.00 3.01
447 453 3.810623 TGGAAACCCACCCTATTAGACT 58.189 45.455 0.00 0.00 0.00 3.24
448 454 4.790718 ATGGAAACCCACCCTATTAGAC 57.209 45.455 0.00 0.00 36.36 2.59
449 455 5.494706 AGAAATGGAAACCCACCCTATTAGA 59.505 40.000 0.00 0.00 36.36 2.10
450 456 5.766590 AGAAATGGAAACCCACCCTATTAG 58.233 41.667 0.00 0.00 36.36 1.73
451 457 5.806955 AGAAATGGAAACCCACCCTATTA 57.193 39.130 0.00 0.00 36.36 0.98
452 458 4.692523 AGAAATGGAAACCCACCCTATT 57.307 40.909 0.00 0.00 36.36 1.73
453 459 4.692523 AAGAAATGGAAACCCACCCTAT 57.307 40.909 0.00 0.00 36.36 2.57
454 460 4.479156 AAAGAAATGGAAACCCACCCTA 57.521 40.909 0.00 0.00 36.36 3.53
455 461 3.344535 AAAGAAATGGAAACCCACCCT 57.655 42.857 0.00 0.00 36.36 4.34
456 462 3.738982 CAAAAGAAATGGAAACCCACCC 58.261 45.455 0.00 0.00 36.36 4.61
457 463 3.138304 GCAAAAGAAATGGAAACCCACC 58.862 45.455 0.00 0.00 36.36 4.61
458 464 3.138304 GGCAAAAGAAATGGAAACCCAC 58.862 45.455 0.00 0.00 36.36 4.61
459 465 3.044894 AGGCAAAAGAAATGGAAACCCA 58.955 40.909 0.00 0.00 38.24 4.51
460 466 3.769739 AGGCAAAAGAAATGGAAACCC 57.230 42.857 0.00 0.00 0.00 4.11
461 467 5.122519 TGAAAGGCAAAAGAAATGGAAACC 58.877 37.500 0.00 0.00 0.00 3.27
462 468 6.866010 ATGAAAGGCAAAAGAAATGGAAAC 57.134 33.333 0.00 0.00 0.00 2.78
463 469 8.373981 TGATATGAAAGGCAAAAGAAATGGAAA 58.626 29.630 0.00 0.00 0.00 3.13
464 470 7.905265 TGATATGAAAGGCAAAAGAAATGGAA 58.095 30.769 0.00 0.00 0.00 3.53
465 471 7.396907 TCTGATATGAAAGGCAAAAGAAATGGA 59.603 33.333 0.00 0.00 0.00 3.41
466 472 7.549839 TCTGATATGAAAGGCAAAAGAAATGG 58.450 34.615 0.00 0.00 0.00 3.16
467 473 8.866956 GTTCTGATATGAAAGGCAAAAGAAATG 58.133 33.333 0.00 0.00 0.00 2.32
468 474 8.587608 TGTTCTGATATGAAAGGCAAAAGAAAT 58.412 29.630 0.00 0.00 0.00 2.17
469 475 7.950512 TGTTCTGATATGAAAGGCAAAAGAAA 58.049 30.769 0.00 0.00 0.00 2.52
470 476 7.523293 TGTTCTGATATGAAAGGCAAAAGAA 57.477 32.000 0.00 0.00 0.00 2.52
471 477 7.523293 TTGTTCTGATATGAAAGGCAAAAGA 57.477 32.000 0.00 0.00 0.00 2.52
472 478 8.653338 CAATTGTTCTGATATGAAAGGCAAAAG 58.347 33.333 0.00 0.00 0.00 2.27
473 479 7.603404 CCAATTGTTCTGATATGAAAGGCAAAA 59.397 33.333 4.43 0.00 0.00 2.44
474 480 7.098477 CCAATTGTTCTGATATGAAAGGCAAA 58.902 34.615 4.43 0.00 0.00 3.68
475 481 6.632909 CCAATTGTTCTGATATGAAAGGCAA 58.367 36.000 4.43 0.00 0.00 4.52
476 482 5.394443 GCCAATTGTTCTGATATGAAAGGCA 60.394 40.000 4.43 0.00 36.03 4.75
477 483 5.045872 GCCAATTGTTCTGATATGAAAGGC 58.954 41.667 4.43 0.00 0.00 4.35
478 484 5.452356 GGGCCAATTGTTCTGATATGAAAGG 60.452 44.000 4.39 0.00 0.00 3.11
479 485 5.594926 GGGCCAATTGTTCTGATATGAAAG 58.405 41.667 4.39 0.00 0.00 2.62
480 486 4.097741 CGGGCCAATTGTTCTGATATGAAA 59.902 41.667 4.39 0.00 0.00 2.69
481 487 3.631686 CGGGCCAATTGTTCTGATATGAA 59.368 43.478 4.39 0.00 0.00 2.57
482 488 3.213506 CGGGCCAATTGTTCTGATATGA 58.786 45.455 4.39 0.00 0.00 2.15
483 489 2.294233 CCGGGCCAATTGTTCTGATATG 59.706 50.000 4.39 0.00 0.00 1.78
484 490 2.586425 CCGGGCCAATTGTTCTGATAT 58.414 47.619 4.39 0.00 0.00 1.63
485 491 1.409521 CCCGGGCCAATTGTTCTGATA 60.410 52.381 8.08 0.00 0.00 2.15
486 492 0.684153 CCCGGGCCAATTGTTCTGAT 60.684 55.000 8.08 0.00 0.00 2.90
487 493 1.304052 CCCGGGCCAATTGTTCTGA 60.304 57.895 8.08 0.00 0.00 3.27
488 494 0.684153 ATCCCGGGCCAATTGTTCTG 60.684 55.000 18.49 1.23 0.00 3.02
489 495 0.923358 TATCCCGGGCCAATTGTTCT 59.077 50.000 18.49 0.00 0.00 3.01
490 496 1.029681 GTATCCCGGGCCAATTGTTC 58.970 55.000 18.49 0.00 0.00 3.18
491 497 0.750182 CGTATCCCGGGCCAATTGTT 60.750 55.000 18.49 0.00 0.00 2.83
492 498 1.153046 CGTATCCCGGGCCAATTGT 60.153 57.895 18.49 0.00 0.00 2.71
493 499 1.153046 ACGTATCCCGGGCCAATTG 60.153 57.895 18.49 5.62 42.24 2.32
494 500 1.153046 CACGTATCCCGGGCCAATT 60.153 57.895 18.49 0.00 42.24 2.32
495 501 1.049855 TACACGTATCCCGGGCCAAT 61.050 55.000 18.49 7.07 46.57 3.16
496 502 1.263342 TTACACGTATCCCGGGCCAA 61.263 55.000 18.49 0.00 46.57 4.52
497 503 1.678598 CTTACACGTATCCCGGGCCA 61.679 60.000 18.49 1.74 46.57 5.36
498 504 1.068585 CTTACACGTATCCCGGGCC 59.931 63.158 18.49 4.93 46.57 5.80
499 505 1.593479 GCTTACACGTATCCCGGGC 60.593 63.158 18.49 0.00 46.57 6.13
501 507 1.931172 CAAAGCTTACACGTATCCCGG 59.069 52.381 0.00 0.00 42.24 5.73
502 508 2.601763 GACAAAGCTTACACGTATCCCG 59.398 50.000 0.00 0.00 44.03 5.14
503 509 2.934553 GGACAAAGCTTACACGTATCCC 59.065 50.000 0.00 0.00 0.00 3.85
504 510 3.617263 CAGGACAAAGCTTACACGTATCC 59.383 47.826 0.00 0.00 0.00 2.59
505 511 4.326548 GTCAGGACAAAGCTTACACGTATC 59.673 45.833 0.00 0.00 0.00 2.24
506 512 4.243270 GTCAGGACAAAGCTTACACGTAT 58.757 43.478 0.00 0.00 0.00 3.06
507 513 3.645884 GTCAGGACAAAGCTTACACGTA 58.354 45.455 0.00 0.00 0.00 3.57
508 514 2.480845 GTCAGGACAAAGCTTACACGT 58.519 47.619 0.00 0.00 0.00 4.49
509 515 1.455786 CGTCAGGACAAAGCTTACACG 59.544 52.381 0.00 0.00 0.00 4.49
510 516 2.731976 CTCGTCAGGACAAAGCTTACAC 59.268 50.000 0.00 0.00 0.00 2.90
511 517 2.288825 CCTCGTCAGGACAAAGCTTACA 60.289 50.000 0.00 0.00 43.65 2.41
512 518 2.029290 TCCTCGTCAGGACAAAGCTTAC 60.029 50.000 0.00 0.00 44.75 2.34
513 519 2.244695 TCCTCGTCAGGACAAAGCTTA 58.755 47.619 0.00 0.00 44.75 3.09
514 520 1.048601 TCCTCGTCAGGACAAAGCTT 58.951 50.000 0.00 0.00 44.75 3.74
515 521 2.746697 TCCTCGTCAGGACAAAGCT 58.253 52.632 0.00 0.00 44.75 3.74
523 529 1.341531 ACAGTCAACTTCCTCGTCAGG 59.658 52.381 0.00 0.00 42.01 3.86
524 530 2.223829 ACACAGTCAACTTCCTCGTCAG 60.224 50.000 0.00 0.00 0.00 3.51
525 531 1.754803 ACACAGTCAACTTCCTCGTCA 59.245 47.619 0.00 0.00 0.00 4.35
526 532 2.128035 CACACAGTCAACTTCCTCGTC 58.872 52.381 0.00 0.00 0.00 4.20
527 533 1.806623 GCACACAGTCAACTTCCTCGT 60.807 52.381 0.00 0.00 0.00 4.18
528 534 0.861837 GCACACAGTCAACTTCCTCG 59.138 55.000 0.00 0.00 0.00 4.63
529 535 0.861837 CGCACACAGTCAACTTCCTC 59.138 55.000 0.00 0.00 0.00 3.71
530 536 0.178068 ACGCACACAGTCAACTTCCT 59.822 50.000 0.00 0.00 0.00 3.36
531 537 0.582005 GACGCACACAGTCAACTTCC 59.418 55.000 0.00 0.00 38.42 3.46
532 538 0.582005 GGACGCACACAGTCAACTTC 59.418 55.000 0.00 0.00 40.20 3.01
533 539 0.178068 AGGACGCACACAGTCAACTT 59.822 50.000 0.00 0.00 40.20 2.66
534 540 0.249489 GAGGACGCACACAGTCAACT 60.249 55.000 0.00 0.00 40.20 3.16
535 541 0.529773 TGAGGACGCACACAGTCAAC 60.530 55.000 0.00 0.00 40.20 3.18
536 542 0.249447 CTGAGGACGCACACAGTCAA 60.249 55.000 0.00 0.00 40.20 3.18
537 543 1.363807 CTGAGGACGCACACAGTCA 59.636 57.895 0.00 0.00 40.20 3.41
538 544 0.249489 AACTGAGGACGCACACAGTC 60.249 55.000 9.69 0.00 41.73 3.51
539 545 0.178068 AAACTGAGGACGCACACAGT 59.822 50.000 4.60 4.60 43.92 3.55
540 546 2.148916 TAAACTGAGGACGCACACAG 57.851 50.000 0.00 0.00 36.58 3.66
541 547 2.036604 TGATAAACTGAGGACGCACACA 59.963 45.455 0.00 0.00 0.00 3.72
542 548 2.683968 TGATAAACTGAGGACGCACAC 58.316 47.619 0.00 0.00 0.00 3.82
543 549 3.610040 ATGATAAACTGAGGACGCACA 57.390 42.857 0.00 0.00 0.00 4.57
544 550 5.107837 CGATTATGATAAACTGAGGACGCAC 60.108 44.000 0.00 0.00 0.00 5.34
545 551 4.982295 CGATTATGATAAACTGAGGACGCA 59.018 41.667 0.00 0.00 0.00 5.24
546 552 4.386049 CCGATTATGATAAACTGAGGACGC 59.614 45.833 0.00 0.00 0.00 5.19
547 553 4.386049 GCCGATTATGATAAACTGAGGACG 59.614 45.833 0.00 0.00 0.00 4.79
548 554 5.406780 CAGCCGATTATGATAAACTGAGGAC 59.593 44.000 0.00 0.00 0.00 3.85
549 555 5.541845 CAGCCGATTATGATAAACTGAGGA 58.458 41.667 0.00 0.00 0.00 3.71
550 556 4.153117 GCAGCCGATTATGATAAACTGAGG 59.847 45.833 10.24 2.86 0.00 3.86
551 557 4.751600 TGCAGCCGATTATGATAAACTGAG 59.248 41.667 10.24 0.00 0.00 3.35
552 558 4.702831 TGCAGCCGATTATGATAAACTGA 58.297 39.130 10.24 0.00 0.00 3.41
553 559 5.410746 AGATGCAGCCGATTATGATAAACTG 59.589 40.000 0.00 0.00 0.00 3.16
554 560 5.555017 AGATGCAGCCGATTATGATAAACT 58.445 37.500 0.00 0.00 0.00 2.66
555 561 5.869753 AGATGCAGCCGATTATGATAAAC 57.130 39.130 0.00 0.00 0.00 2.01
556 562 6.486320 TCAAAGATGCAGCCGATTATGATAAA 59.514 34.615 0.00 0.00 0.00 1.40
557 563 5.997129 TCAAAGATGCAGCCGATTATGATAA 59.003 36.000 0.00 0.00 0.00 1.75
558 564 5.550290 TCAAAGATGCAGCCGATTATGATA 58.450 37.500 0.00 0.00 0.00 2.15
559 565 4.392047 TCAAAGATGCAGCCGATTATGAT 58.608 39.130 0.00 0.00 0.00 2.45
560 566 3.807553 TCAAAGATGCAGCCGATTATGA 58.192 40.909 0.00 0.00 0.00 2.15
561 567 4.534168 CTTCAAAGATGCAGCCGATTATG 58.466 43.478 0.00 0.00 0.00 1.90
562 568 3.567164 CCTTCAAAGATGCAGCCGATTAT 59.433 43.478 0.00 0.00 0.00 1.28
563 569 2.945008 CCTTCAAAGATGCAGCCGATTA 59.055 45.455 0.00 0.00 0.00 1.75
564 570 1.747355 CCTTCAAAGATGCAGCCGATT 59.253 47.619 0.00 0.00 0.00 3.34
565 571 1.386533 CCTTCAAAGATGCAGCCGAT 58.613 50.000 0.00 0.00 0.00 4.18
566 572 0.677731 CCCTTCAAAGATGCAGCCGA 60.678 55.000 0.00 0.00 0.00 5.54
567 573 0.962356 ACCCTTCAAAGATGCAGCCG 60.962 55.000 0.00 0.00 0.00 5.52
568 574 1.260544 AACCCTTCAAAGATGCAGCC 58.739 50.000 0.00 0.00 0.00 4.85
569 575 4.725790 ATTAACCCTTCAAAGATGCAGC 57.274 40.909 0.00 0.00 0.00 5.25
570 576 8.230472 AGATAATTAACCCTTCAAAGATGCAG 57.770 34.615 0.00 0.00 0.00 4.41
571 577 8.593945 AAGATAATTAACCCTTCAAAGATGCA 57.406 30.769 0.00 0.00 0.00 3.96
572 578 9.875691 AAAAGATAATTAACCCTTCAAAGATGC 57.124 29.630 0.00 0.00 0.00 3.91
575 581 9.705290 GCAAAAAGATAATTAACCCTTCAAAGA 57.295 29.630 0.00 0.00 0.00 2.52
576 582 8.935844 GGCAAAAAGATAATTAACCCTTCAAAG 58.064 33.333 0.00 0.00 0.00 2.77
580 586 7.182817 AGGGCAAAAAGATAATTAACCCTTC 57.817 36.000 0.00 0.00 42.56 3.46
595 601 2.312390 GGACACCACTAAGGGCAAAAA 58.688 47.619 0.00 0.00 43.89 1.94
640 646 3.064931 GGAAAAACTGAGGACGATTCGT 58.935 45.455 12.25 12.25 45.10 3.85
649 655 2.642807 TGGACTAGGGGAAAAACTGAGG 59.357 50.000 0.00 0.00 0.00 3.86
740 746 3.775654 CTCTGCCGTCTGGTCCCC 61.776 72.222 0.00 0.00 37.67 4.81
760 766 3.525537 CAATGGTCTGATTGTCTAGCGT 58.474 45.455 0.00 0.00 0.00 5.07
813 834 0.107606 CAATGGCTCTCTGCTCAGCT 60.108 55.000 0.00 0.00 42.39 4.24
815 836 1.429927 CGCAATGGCTCTCTGCTCAG 61.430 60.000 0.00 0.00 42.39 3.35
894 934 4.039357 CGTCGTGCTCCCTGTCGT 62.039 66.667 0.00 0.00 0.00 4.34
901 941 3.986006 TGGTCACCGTCGTGCTCC 61.986 66.667 0.00 0.00 40.04 4.70
923 963 1.092921 TTCGCCGCTCTCTCTCTCTC 61.093 60.000 0.00 0.00 0.00 3.20
924 964 1.078072 TTCGCCGCTCTCTCTCTCT 60.078 57.895 0.00 0.00 0.00 3.10
927 967 2.411290 CCTTCGCCGCTCTCTCTC 59.589 66.667 0.00 0.00 0.00 3.20
941 981 2.122768 CCTCCACAGCTATCTTCCCTT 58.877 52.381 0.00 0.00 0.00 3.95
942 982 1.694048 CCCTCCACAGCTATCTTCCCT 60.694 57.143 0.00 0.00 0.00 4.20
968 1008 0.613260 CGAAGGGGATCTCAACACCA 59.387 55.000 0.00 0.00 32.49 4.17
1034 1074 3.434319 CATGCGTCGGGCTTTGCT 61.434 61.111 0.00 0.00 44.05 3.91
1038 1078 3.958147 CTCCACATGCGTCGGGCTT 62.958 63.158 0.00 0.00 44.05 4.35
1050 1090 2.362397 GACGAAGATAGGCATCTCCACA 59.638 50.000 0.00 0.00 40.81 4.17
1090 1130 3.265221 TGAGAAACCCTCAGATCAATGCT 59.735 43.478 0.00 0.00 46.38 3.79
1137 1177 4.331992 CCATTCTCACTGCACACATAGAAG 59.668 45.833 0.00 0.00 0.00 2.85
1200 1240 3.760684 AGATCAACCCATTGCTCAAAGAC 59.239 43.478 0.00 0.00 34.09 3.01
1225 1265 1.236616 TTCACCTGCATGAACGCCAG 61.237 55.000 0.00 0.00 33.62 4.85
1270 1310 3.009363 TCATTCATCAGAGTCTTGGCCAA 59.991 43.478 19.25 19.25 0.00 4.52
1356 1607 1.753649 TCCATCTCTTCTTCCAGAGCG 59.246 52.381 0.00 0.00 40.33 5.03
1361 1612 1.207791 GCCCTCCATCTCTTCTTCCA 58.792 55.000 0.00 0.00 0.00 3.53
1536 1857 9.919416 TCTTCCATAATTCATGTCTTTCCATAA 57.081 29.630 0.00 0.00 32.21 1.90
1589 1910 6.645003 GGACCAACATTTAAACAAGGTGAATC 59.355 38.462 7.84 4.14 0.00 2.52
1727 2050 2.346766 TTGACAGAAAGGCAGAGCAA 57.653 45.000 0.00 0.00 35.94 3.91
1756 2080 1.821136 GAATTTGGCCCACAGAGGAAG 59.179 52.381 0.00 0.00 41.22 3.46
1845 2170 2.676839 CACGCAAGAGATCTCATTTGCT 59.323 45.455 31.09 21.54 42.71 3.91
1874 2201 9.077885 TGCCTAAATTAAGTCAGAACAGAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
2078 2415 2.909504 AACCTCTACCAGAGCTGAGA 57.090 50.000 0.00 0.00 40.98 3.27
2173 2511 3.922171 TTTGTGCATTTTCCACCCTTT 57.078 38.095 0.00 0.00 32.30 3.11
2238 2576 0.884704 CAGCACAACCTTACACGCCT 60.885 55.000 0.00 0.00 0.00 5.52
2244 2582 1.802365 CGGTTACCAGCACAACCTTAC 59.198 52.381 1.13 0.00 41.75 2.34
2247 2585 1.599797 GCGGTTACCAGCACAACCT 60.600 57.895 11.96 0.00 41.75 3.50
2324 2663 7.659799 GCATTTTTAAACCCTAAACCAAGTCAT 59.340 33.333 0.00 0.00 0.00 3.06
2348 2687 6.475076 GTGAAAACATTCAGTACAAACATGCA 59.525 34.615 0.00 0.00 0.00 3.96
2370 2709 0.392706 AACCACTCTCATGCGTGTGA 59.607 50.000 17.14 10.11 32.72 3.58
2378 2717 6.340522 CAAAACAAAGGAAAACCACTCTCAT 58.659 36.000 0.00 0.00 0.00 2.90
2438 2777 3.719268 AACTGGAATCATGTGGCAGTA 57.281 42.857 0.00 0.00 0.00 2.74
2454 2796 2.550830 ACCAAGTGCCACTCTAACTG 57.449 50.000 0.00 0.00 0.00 3.16
2455 2797 3.577805 AAACCAAGTGCCACTCTAACT 57.422 42.857 0.00 0.00 0.00 2.24
2488 2830 9.410556 GTCATGAACTAACATGCAAAGTTATTT 57.589 29.630 13.45 13.70 44.79 1.40
2494 2836 5.860182 CCAAGTCATGAACTAACATGCAAAG 59.140 40.000 0.00 0.00 44.79 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.