Multiple sequence alignment - TraesCS6A01G341700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G341700 chr6A 100.000 6354 0 0 2947 9300 574474524 574480877 0.000000e+00 11734.0
1 TraesCS6A01G341700 chr6A 100.000 2753 0 0 1 2753 574471578 574474330 0.000000e+00 5084.0
2 TraesCS6A01G341700 chr6A 84.691 307 38 4 8621 8927 570726904 570727201 1.960000e-76 298.0
3 TraesCS6A01G341700 chr6D 95.980 5124 137 25 3488 8606 429306887 429311946 0.000000e+00 8257.0
4 TraesCS6A01G341700 chr6D 96.825 1134 27 5 1614 2747 429304973 429306097 0.000000e+00 1886.0
5 TraesCS6A01G341700 chr6D 92.254 1136 65 6 492 1614 429303817 429304942 0.000000e+00 1589.0
6 TraesCS6A01G341700 chr6D 96.125 542 18 2 2947 3485 429306299 429306840 0.000000e+00 881.0
7 TraesCS6A01G341700 chr6D 87.758 678 53 9 8625 9300 429347985 429348634 0.000000e+00 765.0
8 TraesCS6A01G341700 chr6D 92.763 304 22 0 8624 8927 429314016 429313713 3.080000e-119 440.0
9 TraesCS6A01G341700 chr6D 82.917 480 40 10 38 500 429217579 429218033 2.430000e-105 394.0
10 TraesCS6A01G341700 chr6D 83.224 304 42 4 8624 8927 425087530 425087236 4.280000e-68 270.0
11 TraesCS6A01G341700 chr6B 95.218 3367 126 11 5260 8606 646627777 646631128 0.000000e+00 5293.0
12 TraesCS6A01G341700 chr6B 96.365 1788 55 5 3488 5271 646621021 646622802 0.000000e+00 2933.0
13 TraesCS6A01G341700 chr6B 93.849 1642 61 12 1 1614 646617410 646619039 0.000000e+00 2436.0
14 TraesCS6A01G341700 chr6B 97.105 1140 22 3 1614 2753 646619070 646620198 0.000000e+00 1912.0
15 TraesCS6A01G341700 chr6B 97.309 446 9 2 2952 3394 646620501 646620946 0.000000e+00 754.0
16 TraesCS6A01G341700 chr6B 87.710 594 47 11 8621 9208 646648156 646648729 0.000000e+00 669.0
17 TraesCS6A01G341700 chr6B 92.105 304 24 0 8624 8927 646632335 646632032 6.670000e-116 429.0
18 TraesCS6A01G341700 chr6B 86.184 304 33 4 8624 8927 441048809 441048515 4.190000e-83 320.0
19 TraesCS6A01G341700 chr3D 88.679 265 24 4 1942 2205 49968143 49968402 1.510000e-82 318.0
20 TraesCS6A01G341700 chr5A 87.925 265 31 1 1942 2205 205626433 205626169 2.520000e-80 311.0
21 TraesCS6A01G341700 chr3A 88.987 227 25 0 1979 2205 433852905 433853131 1.980000e-71 281.0
22 TraesCS6A01G341700 chr3A 85.600 125 17 1 1884 2007 385316109 385316233 7.580000e-26 130.0
23 TraesCS6A01G341700 chr1A 90.244 123 12 0 1885 2007 371524698 371524820 2.690000e-35 161.0
24 TraesCS6A01G341700 chr3B 87.097 124 16 0 1884 2007 330517517 330517640 3.500000e-29 141.0
25 TraesCS6A01G341700 chr1B 77.220 259 45 7 8670 8927 524153982 524153737 1.260000e-28 139.0
26 TraesCS6A01G341700 chr1B 75.417 240 42 8 8692 8927 524161102 524160876 5.940000e-17 100.0
27 TraesCS6A01G341700 chr7A 96.875 32 1 0 639 670 581939200 581939231 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G341700 chr6A 574471578 574480877 9299 False 8409.00 11734 100.000 1 9300 2 chr6A.!!$F2 9299
1 TraesCS6A01G341700 chr6D 429303817 429311946 8129 False 3153.25 8257 95.296 492 8606 4 chr6D.!!$F3 8114
2 TraesCS6A01G341700 chr6D 429347985 429348634 649 False 765.00 765 87.758 8625 9300 1 chr6D.!!$F2 675
3 TraesCS6A01G341700 chr6B 646627777 646631128 3351 False 5293.00 5293 95.218 5260 8606 1 chr6B.!!$F1 3346
4 TraesCS6A01G341700 chr6B 646617410 646622802 5392 False 2008.75 2933 96.157 1 5271 4 chr6B.!!$F3 5270
5 TraesCS6A01G341700 chr6B 646648156 646648729 573 False 669.00 669 87.710 8621 9208 1 chr6B.!!$F2 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 726 0.375803 GACGCCCGATACGCAAAATT 59.624 50.000 0.00 0.0 0.00 1.82 F
1223 1262 0.533755 GCCTCTACCGTCGCCTACTA 60.534 60.000 0.00 0.0 0.00 1.82 F
1750 1820 1.544246 GCTATTTTGGTTCCGGCAAGT 59.456 47.619 0.00 0.0 0.00 3.16 F
3144 3321 0.029834 CTTGTCGGCCATTGCTATGC 59.970 55.000 2.24 0.0 37.74 3.14 F
3445 3623 0.598562 CGGCCTATGAGCATAGACGT 59.401 55.000 16.92 0.0 42.55 4.34 F
4818 5046 1.176527 GCTGGATGCCACAAAAGCTA 58.823 50.000 0.00 0.0 35.15 3.32 F
6284 6521 0.107410 TTCCGGTGTGCTCAGTTGTT 60.107 50.000 0.00 0.0 0.00 2.83 F
7301 7542 1.065854 AGGAAGGGCAATTCGTCTGAG 60.066 52.381 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 1820 2.093306 AACATCTTGCGATTCCGTCA 57.907 45.000 0.00 0.00 38.24 4.35 R
3036 3213 2.290641 GCGGTCCATTATTGGTAAGCTG 59.709 50.000 3.65 0.89 44.06 4.24 R
3426 3604 0.598562 ACGTCTATGCTCATAGGCCG 59.401 55.000 13.91 16.79 41.66 6.13 R
4826 5054 0.593128 AACCGTCATTCACTTGCTGC 59.407 50.000 0.00 0.00 0.00 5.25 R
5412 5640 2.854522 GCATTCAAGCCTGTACCGT 58.145 52.632 0.00 0.00 0.00 4.83 R
6422 6659 0.685097 TCAAGCGAGCTAACCCAGTT 59.315 50.000 0.00 0.00 0.00 3.16 R
7628 7871 0.039256 GCTTTTCAGCACGGCAATGA 60.039 50.000 0.00 0.00 46.49 2.57 R
8813 9068 0.036577 GCGCCAGCCATCATCTCTAT 60.037 55.000 0.00 0.00 37.42 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.445786 TGAACGATATGTTTCAAACTTTCTTTC 57.554 29.630 1.10 6.05 42.09 2.62
111 112 7.820872 TCCTTACAAACTAGTCCCTTAAAATCG 59.179 37.037 0.00 0.00 0.00 3.34
116 117 5.548181 ACTAGTCCCTTAAAATCGATCCC 57.452 43.478 0.00 0.00 0.00 3.85
119 120 7.017531 ACTAGTCCCTTAAAATCGATCCCTAT 58.982 38.462 0.00 0.00 0.00 2.57
141 142 2.064581 GGACCCATACACCCGAGCT 61.065 63.158 0.00 0.00 0.00 4.09
159 160 0.961753 CTCCCAGGGCACTTTTTGAC 59.038 55.000 0.00 0.00 0.00 3.18
163 164 1.613437 CCAGGGCACTTTTTGACGAAT 59.387 47.619 0.00 0.00 31.40 3.34
228 229 5.344066 GTGAGCTCTTGTTGAAGATCGATA 58.656 41.667 16.19 0.00 37.58 2.92
277 290 9.415544 GAAGCTAAATTAATAAAGCCATCATGG 57.584 33.333 15.00 0.00 41.55 3.66
279 292 8.800332 AGCTAAATTAATAAAGCCATCATGGAG 58.200 33.333 8.30 0.00 40.96 3.86
308 321 9.677567 AGTTAAACATGATTGTTGTTGTCATAC 57.322 29.630 0.00 0.00 45.30 2.39
349 362 4.933400 TCTACAAAGACCGAGTAAAATGCC 59.067 41.667 0.00 0.00 0.00 4.40
411 424 3.025978 GTGGATGGATCAAAGATTGGCA 58.974 45.455 0.00 0.00 0.00 4.92
422 435 3.996921 AAGATTGGCAGAGTCATCACT 57.003 42.857 0.00 0.00 34.57 3.41
511 524 3.434940 AGGTTTGACCCTACCATGTTC 57.565 47.619 0.00 0.00 39.75 3.18
533 546 5.529289 TCAAGGTACACTCATCTCCCTAAT 58.471 41.667 0.00 0.00 0.00 1.73
555 568 9.909644 CTAATCATCCAATCAAAGATTCATTCC 57.090 33.333 0.00 0.00 31.89 3.01
557 570 6.196434 TCATCCAATCAAAGATTCATTCCCA 58.804 36.000 0.00 0.00 0.00 4.37
627 642 5.645497 CCTAAAAAGAGAGTGCATGCTTAGT 59.355 40.000 20.33 1.51 0.00 2.24
634 649 1.825474 AGTGCATGCTTAGTAGTCGGT 59.175 47.619 20.33 0.00 0.00 4.69
710 726 0.375803 GACGCCCGATACGCAAAATT 59.624 50.000 0.00 0.00 0.00 1.82
718 734 4.331717 CCCGATACGCAAAATTCAAGTAGT 59.668 41.667 0.00 0.00 0.00 2.73
859 898 3.171348 AGCCCACTGAAACCTCCC 58.829 61.111 0.00 0.00 0.00 4.30
1223 1262 0.533755 GCCTCTACCGTCGCCTACTA 60.534 60.000 0.00 0.00 0.00 1.82
1750 1820 1.544246 GCTATTTTGGTTCCGGCAAGT 59.456 47.619 0.00 0.00 0.00 3.16
2110 2180 3.555139 CAGGAGATGAACTCGCTTCAATC 59.445 47.826 0.19 2.54 45.76 2.67
2263 2333 4.533919 TTGGCATTCCTTGGTTGTTATG 57.466 40.909 0.00 0.00 0.00 1.90
2271 2341 7.657336 CATTCCTTGGTTGTTATGTGTTACTT 58.343 34.615 0.00 0.00 0.00 2.24
2272 2342 8.788806 CATTCCTTGGTTGTTATGTGTTACTTA 58.211 33.333 0.00 0.00 0.00 2.24
2273 2343 7.733402 TCCTTGGTTGTTATGTGTTACTTAC 57.267 36.000 0.00 0.00 0.00 2.34
2274 2344 7.281098 TCCTTGGTTGTTATGTGTTACTTACA 58.719 34.615 0.00 0.00 0.00 2.41
2275 2345 7.774157 TCCTTGGTTGTTATGTGTTACTTACAA 59.226 33.333 0.00 0.00 38.80 2.41
2276 2346 8.073768 CCTTGGTTGTTATGTGTTACTTACAAG 58.926 37.037 0.00 0.00 38.80 3.16
2277 2347 8.508883 TTGGTTGTTATGTGTTACTTACAAGT 57.491 30.769 0.00 0.00 42.91 3.16
2359 2429 4.668576 TGAAGAAGCTAGATTTTGTGCG 57.331 40.909 0.00 0.00 0.00 5.34
2444 2514 5.382616 TCGACCAGATTAAGGCTAGACATA 58.617 41.667 0.00 0.00 0.00 2.29
2566 2636 9.504708 TTTCTTGTAATTTCATTGGCATTTGAT 57.495 25.926 1.99 0.00 0.00 2.57
2709 2779 3.815401 AGGCTTTGTTTGCAGTACTGTAG 59.185 43.478 23.44 7.87 0.00 2.74
2710 2780 3.564225 GGCTTTGTTTGCAGTACTGTAGT 59.436 43.478 23.44 0.00 0.00 2.73
2711 2781 4.753107 GGCTTTGTTTGCAGTACTGTAGTA 59.247 41.667 23.44 8.97 0.00 1.82
3036 3213 9.129209 GTTGTAGATCTGGTTTTTATTTTCAGC 57.871 33.333 5.18 0.00 0.00 4.26
3049 3226 9.988815 TTTTTATTTTCAGCAGCTTACCAATAA 57.011 25.926 0.00 0.00 0.00 1.40
3090 3267 7.442364 TCTTTCTAGTTTTTGGTGTCTCATCTG 59.558 37.037 0.00 0.00 0.00 2.90
3131 3308 2.807967 TCTTTCACCATGCTTCTTGTCG 59.192 45.455 0.00 0.00 0.00 4.35
3144 3321 0.029834 CTTGTCGGCCATTGCTATGC 59.970 55.000 2.24 0.00 37.74 3.14
3403 3581 2.472488 GCACTTTGATCTTGCCAAAACG 59.528 45.455 0.00 0.00 33.68 3.60
3426 3604 3.757745 TGCCGCTTAAGATTTTGCTAC 57.242 42.857 6.67 0.00 0.00 3.58
3445 3623 0.598562 CGGCCTATGAGCATAGACGT 59.401 55.000 16.92 0.00 42.55 4.34
3485 3663 4.455877 GCTGTAGCCTGTAAACTTGAATGT 59.544 41.667 0.00 0.00 34.31 2.71
3580 3804 2.029020 GGGGCCAAAGAATGTTCTTGAC 60.029 50.000 4.39 0.23 46.22 3.18
3775 4000 7.276438 GCTTTAACAATAAAAGGATCAAGCCAG 59.724 37.037 0.00 0.00 35.04 4.85
3801 4026 7.750903 GTCATTTTTGAACTACAGCCTGATAAC 59.249 37.037 0.00 0.00 0.00 1.89
4404 4629 8.116753 CCGATTGTTGTACTCTTTGTGAATATC 58.883 37.037 0.00 0.00 0.00 1.63
4463 4688 8.215926 TCTCGGAGTTGTTTGATTTTTCTTTA 57.784 30.769 4.69 0.00 0.00 1.85
4619 4844 3.722728 GGAGTGCAATTCCATCATTCC 57.277 47.619 12.46 0.00 43.25 3.01
4818 5046 1.176527 GCTGGATGCCACAAAAGCTA 58.823 50.000 0.00 0.00 35.15 3.32
4826 5054 3.768406 TGCCACAAAAGCTATTAATGCG 58.232 40.909 0.00 0.00 35.28 4.73
4964 5192 6.438763 CAGTTTAAGTCCAGTGTTGATTTCC 58.561 40.000 0.00 0.00 0.00 3.13
4967 5195 7.123547 AGTTTAAGTCCAGTGTTGATTTCCAAA 59.876 33.333 0.00 0.00 36.36 3.28
5116 5344 7.928908 TTTCATGCAACTTATGTTTGTCTTC 57.071 32.000 0.00 0.00 33.52 2.87
5159 5387 5.782893 TGTAAATTGCTTGTACCTTGCTT 57.217 34.783 0.00 0.00 0.00 3.91
5160 5388 6.155475 TGTAAATTGCTTGTACCTTGCTTT 57.845 33.333 0.00 0.00 0.00 3.51
5412 5640 3.244805 TGCCATGCCAATTTCCATCAAAA 60.245 39.130 0.00 0.00 0.00 2.44
5501 5729 9.598517 AACATCAACACAGTTTATGAACAAATT 57.401 25.926 10.12 0.00 38.26 1.82
5809 6037 8.522542 TTACCTAAGGCTGTTCTTTTGTTTTA 57.477 30.769 0.00 0.00 0.00 1.52
5857 6085 8.136165 GTGAGTTTTTCTGTTCAGAGTAGAGTA 58.864 37.037 2.77 0.00 0.00 2.59
6179 6416 5.627499 TCTTTGACATGGTACTTCAATGC 57.373 39.130 0.00 0.00 0.00 3.56
6284 6521 0.107410 TTCCGGTGTGCTCAGTTGTT 60.107 50.000 0.00 0.00 0.00 2.83
6422 6659 2.204237 CATGCGATTAGTGCTGCTGTA 58.796 47.619 0.00 0.00 0.00 2.74
6921 7162 8.934023 AAGATAAGACAAGTGTTTGGGAAATA 57.066 30.769 0.00 0.00 38.66 1.40
6933 7174 7.173047 AGTGTTTGGGAAATAAATGCACATTTC 59.827 33.333 11.69 16.44 40.99 2.17
6979 7220 7.895759 TCCTTTTATTTGAGCTTGCTTGTAAT 58.104 30.769 0.00 0.76 0.00 1.89
7192 7433 4.604976 CAGAGTTCCAACAAAAGCTTCAG 58.395 43.478 0.00 0.00 0.00 3.02
7301 7542 1.065854 AGGAAGGGCAATTCGTCTGAG 60.066 52.381 0.00 0.00 0.00 3.35
7579 7822 2.424956 GTCCCTTTTCCAAGCAGCATAG 59.575 50.000 0.00 0.00 0.00 2.23
7581 7824 2.424956 CCCTTTTCCAAGCAGCATAGTC 59.575 50.000 0.00 0.00 0.00 2.59
7583 7826 3.760684 CCTTTTCCAAGCAGCATAGTCTT 59.239 43.478 0.00 0.00 0.00 3.01
7595 7838 4.763594 GCATAGTCTTGCTTCTCGTAAC 57.236 45.455 0.00 0.00 39.57 2.50
7641 7884 1.138036 CCATGTCATTGCCGTGCTG 59.862 57.895 0.00 0.00 0.00 4.41
7672 7915 3.255149 CCTCAGAAGCTGAAACAATTGCT 59.745 43.478 5.05 0.00 40.18 3.91
7707 7950 2.816087 GCCTGAGAAGCTGAAACAATCA 59.184 45.455 0.00 0.00 36.38 2.57
7735 7978 6.915544 TGTTTGCATTTGCTTTTATTCACA 57.084 29.167 3.94 0.00 42.66 3.58
7760 8003 0.578211 GTCGAACCGAAAGCGTCAAA 59.422 50.000 0.00 0.00 37.72 2.69
7781 8024 7.920682 GTCAAAATAAGAACTTGCAGGAAAAGA 59.079 33.333 1.40 0.00 0.00 2.52
7852 8095 0.250684 TGCGGTTGGCTCTCAAATCA 60.251 50.000 0.00 0.00 44.05 2.57
7881 8124 1.495579 AAGAGGGCTGCACCTGATGT 61.496 55.000 13.37 0.00 42.10 3.06
7933 8176 2.755650 GAAGGCCGTATGATCATTCGT 58.244 47.619 26.43 12.94 31.04 3.85
7978 8221 0.745845 AGCCCATTGTCTCGCATGAC 60.746 55.000 0.00 0.00 37.47 3.06
8119 8362 6.830912 TCTCAAGAAGAAAGACAAGATGGAA 58.169 36.000 0.00 0.00 0.00 3.53
8146 8389 1.668419 CTTACTGGCCTTTGGATCGG 58.332 55.000 3.32 0.00 0.00 4.18
8182 8425 1.416813 GGTCAGATCGCAAGCAGTCG 61.417 60.000 0.00 0.00 37.18 4.18
8236 8479 1.000607 GCGAAAAGGTTTGAGGGGAAC 60.001 52.381 0.00 0.00 0.00 3.62
8305 8558 5.633182 GCAGAAGAAGAACAAGTGAGTAGAG 59.367 44.000 0.00 0.00 0.00 2.43
8306 8559 6.155827 CAGAAGAAGAACAAGTGAGTAGAGG 58.844 44.000 0.00 0.00 0.00 3.69
8307 8560 6.015856 CAGAAGAAGAACAAGTGAGTAGAGGA 60.016 42.308 0.00 0.00 0.00 3.71
8308 8561 5.975693 AGAAGAACAAGTGAGTAGAGGAG 57.024 43.478 0.00 0.00 0.00 3.69
8309 8562 5.636123 AGAAGAACAAGTGAGTAGAGGAGA 58.364 41.667 0.00 0.00 0.00 3.71
8322 8575 0.107116 GAGGAGACGAGGCTGTAGGA 60.107 60.000 0.00 0.00 0.00 2.94
8404 8657 1.023513 ATGCTGCTGCCGTTTCTCTC 61.024 55.000 13.47 0.00 38.71 3.20
8414 8667 1.534163 CCGTTTCTCTCGGTTTTTCCC 59.466 52.381 0.00 0.00 42.62 3.97
8437 8690 4.681483 CGAAGGAAAATTTTGACTGCTTCC 59.319 41.667 8.47 0.47 33.97 3.46
8528 8782 9.171877 AGGATTTTGTACTTTCAGATTCAGATC 57.828 33.333 0.00 0.00 0.00 2.75
8587 8842 6.483385 TGTAAAATCTTGCAATTTGCCATG 57.517 33.333 18.27 8.62 44.23 3.66
8589 8844 5.365403 AAAATCTTGCAATTTGCCATGTG 57.635 34.783 18.27 4.75 44.23 3.21
8590 8845 1.798283 TCTTGCAATTTGCCATGTGC 58.202 45.000 18.27 0.00 44.23 4.57
8593 8848 0.951525 TGCAATTTGCCATGTGCTGC 60.952 50.000 18.27 7.82 44.23 5.25
8606 8861 4.248859 CATGTGCTGCTAGTTTGTCTAGT 58.751 43.478 0.00 0.00 45.65 2.57
8607 8862 4.336889 TGTGCTGCTAGTTTGTCTAGTT 57.663 40.909 0.00 0.00 45.65 2.24
8608 8863 4.703897 TGTGCTGCTAGTTTGTCTAGTTT 58.296 39.130 0.00 0.00 45.65 2.66
8609 8864 4.511454 TGTGCTGCTAGTTTGTCTAGTTTG 59.489 41.667 0.00 0.00 45.65 2.93
8610 8865 4.511826 GTGCTGCTAGTTTGTCTAGTTTGT 59.488 41.667 0.00 0.00 45.65 2.83
8611 8866 4.750098 TGCTGCTAGTTTGTCTAGTTTGTC 59.250 41.667 0.00 0.00 45.65 3.18
8612 8867 4.750098 GCTGCTAGTTTGTCTAGTTTGTCA 59.250 41.667 0.00 0.00 45.65 3.58
8613 8868 5.107298 GCTGCTAGTTTGTCTAGTTTGTCAG 60.107 44.000 0.00 3.96 45.65 3.51
8614 8869 4.750098 TGCTAGTTTGTCTAGTTTGTCAGC 59.250 41.667 0.00 0.00 45.65 4.26
8615 8870 4.152580 GCTAGTTTGTCTAGTTTGTCAGCC 59.847 45.833 0.00 0.00 45.65 4.85
8616 8871 4.150897 AGTTTGTCTAGTTTGTCAGCCA 57.849 40.909 0.00 0.00 0.00 4.75
8617 8872 4.523083 AGTTTGTCTAGTTTGTCAGCCAA 58.477 39.130 0.00 0.00 0.00 4.52
8618 8873 4.576463 AGTTTGTCTAGTTTGTCAGCCAAG 59.424 41.667 0.00 0.00 33.75 3.61
8619 8874 4.415881 TTGTCTAGTTTGTCAGCCAAGA 57.584 40.909 0.00 0.00 33.75 3.02
8622 8877 2.303022 TCTAGTTTGTCAGCCAAGAGGG 59.697 50.000 0.00 0.00 40.85 4.30
8640 8895 2.503061 CCTCTCTGCCATGGACGG 59.497 66.667 18.40 12.25 0.00 4.79
8692 8947 1.557269 AAGATCTGAACCCGCCTGCT 61.557 55.000 0.00 0.00 0.00 4.24
8737 8992 2.494677 GCTCGAGCTTCTCCACCTA 58.505 57.895 29.88 0.00 38.21 3.08
8761 9016 1.639298 GCGGCAAGTTTCTCATCGCT 61.639 55.000 0.00 0.00 38.82 4.93
8771 9026 6.282199 AGTTTCTCATCGCTAAGACCTTTA 57.718 37.500 0.00 0.00 0.00 1.85
8773 9028 4.288670 TCTCATCGCTAAGACCTTTACG 57.711 45.455 0.00 0.00 0.00 3.18
8788 9043 4.803098 CTTTACGGAAGGAGAAAGAGGA 57.197 45.455 0.00 0.00 33.76 3.71
8792 9047 1.897647 CGGAAGGAGAAAGAGGAGGGT 60.898 57.143 0.00 0.00 0.00 4.34
8797 9052 3.715287 AGGAGAAAGAGGAGGGTACTTC 58.285 50.000 0.00 0.00 0.00 3.01
8812 9067 3.649277 CTTCTCCGTGCTCACCGGG 62.649 68.421 6.32 0.00 45.51 5.73
8813 9068 4.671590 TCTCCGTGCTCACCGGGA 62.672 66.667 6.32 0.00 45.51 5.14
8828 9083 1.206610 CCGGGATAGAGATGATGGCTG 59.793 57.143 0.00 0.00 0.00 4.85
8902 9157 1.263217 GCACGTTTTGTCTTCACGGAT 59.737 47.619 0.00 0.00 38.26 4.18
8906 9161 2.411547 CGTTTTGTCTTCACGGATGAGC 60.412 50.000 0.00 0.00 35.83 4.26
8927 9182 0.459237 CATCGAGTGGGTGCTCTGAC 60.459 60.000 0.00 0.00 33.55 3.51
8928 9183 0.613292 ATCGAGTGGGTGCTCTGACT 60.613 55.000 0.00 0.00 33.55 3.41
8929 9184 1.214062 CGAGTGGGTGCTCTGACTC 59.786 63.158 0.00 0.00 33.55 3.36
8930 9185 1.247419 CGAGTGGGTGCTCTGACTCT 61.247 60.000 12.65 0.50 33.97 3.24
8931 9186 0.246086 GAGTGGGTGCTCTGACTCTG 59.754 60.000 9.22 0.00 33.46 3.35
8932 9187 0.178950 AGTGGGTGCTCTGACTCTGA 60.179 55.000 0.00 0.00 0.00 3.27
8933 9188 0.246086 GTGGGTGCTCTGACTCTGAG 59.754 60.000 2.45 2.45 33.52 3.35
8934 9189 0.178950 TGGGTGCTCTGACTCTGAGT 60.179 55.000 10.66 10.66 33.06 3.41
8935 9190 0.246086 GGGTGCTCTGACTCTGAGTG 59.754 60.000 16.28 1.62 33.06 3.51
8936 9191 1.252175 GGTGCTCTGACTCTGAGTGA 58.748 55.000 16.28 5.82 33.06 3.41
8961 9216 7.850935 AATGAATAATCTTGCATCCCTTCAT 57.149 32.000 0.00 0.00 34.51 2.57
9002 9258 1.363744 GAGAATGTTGCTCTGGACCG 58.636 55.000 0.00 0.00 0.00 4.79
9043 9303 6.939730 AGGAAAATGTTGACCTTTTTGTGTTT 59.060 30.769 0.00 0.00 32.35 2.83
9079 9341 3.325870 TCAGTATCTTGACGCTGTTTGG 58.674 45.455 0.00 0.00 0.00 3.28
9080 9342 3.067106 CAGTATCTTGACGCTGTTTGGT 58.933 45.455 0.00 0.00 0.00 3.67
9081 9343 4.021807 TCAGTATCTTGACGCTGTTTGGTA 60.022 41.667 0.00 0.00 0.00 3.25
9082 9344 4.327357 CAGTATCTTGACGCTGTTTGGTAG 59.673 45.833 0.00 0.00 0.00 3.18
9083 9345 2.163818 TCTTGACGCTGTTTGGTAGG 57.836 50.000 0.00 0.00 0.00 3.18
9084 9346 1.689813 TCTTGACGCTGTTTGGTAGGA 59.310 47.619 0.00 0.00 0.00 2.94
9117 9379 6.312399 AGATTGAAACGTGCTGTAATTTCA 57.688 33.333 0.00 0.00 38.85 2.69
9173 9435 4.223700 CCATCCTGCCTATGCTGTATTCTA 59.776 45.833 0.00 0.00 38.71 2.10
9174 9436 5.280164 CCATCCTGCCTATGCTGTATTCTAA 60.280 44.000 0.00 0.00 38.71 2.10
9175 9437 6.413052 CATCCTGCCTATGCTGTATTCTAAT 58.587 40.000 0.00 0.00 38.71 1.73
9176 9438 5.798132 TCCTGCCTATGCTGTATTCTAATG 58.202 41.667 0.00 0.00 38.71 1.90
9177 9439 5.543790 TCCTGCCTATGCTGTATTCTAATGA 59.456 40.000 0.00 0.00 38.71 2.57
9178 9440 5.873712 CCTGCCTATGCTGTATTCTAATGAG 59.126 44.000 0.00 0.00 38.71 2.90
9210 9472 9.715119 AGGATGCTTATGTGTACATATATAGGA 57.285 33.333 12.47 13.10 38.49 2.94
9236 9498 5.434352 AGCTGATGATGTTGTGCATATTC 57.566 39.130 0.00 0.00 38.06 1.75
9246 9508 6.691754 TGTTGTGCATATTCGGACATAATT 57.308 33.333 0.00 0.00 37.07 1.40
9294 9556 4.644685 GTGCATATGGTACCCAAATGACTT 59.355 41.667 17.79 0.00 36.95 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.280677 CACAAAATCATGGGTACAAGTGGT 59.719 41.667 0.00 0.00 0.00 4.16
5 6 4.522405 TCACAAAATCATGGGTACAAGTGG 59.478 41.667 0.00 0.00 0.00 4.00
8 9 5.049060 TCGTTCACAAAATCATGGGTACAAG 60.049 40.000 0.00 0.00 0.00 3.16
11 12 5.560966 ATCGTTCACAAAATCATGGGTAC 57.439 39.130 0.00 0.00 0.00 3.34
123 124 2.029307 GAGCTCGGGTGTATGGGTCC 62.029 65.000 0.00 0.00 0.00 4.46
141 142 0.821711 CGTCAAAAAGTGCCCTGGGA 60.822 55.000 19.27 0.00 0.00 4.37
159 160 6.579292 GTCATCGACAAGAACTATAGGATTCG 59.421 42.308 4.43 3.83 32.09 3.34
163 164 4.583489 GGGTCATCGACAAGAACTATAGGA 59.417 45.833 4.43 0.00 33.68 2.94
337 350 3.223157 GTGTGTTTCGGCATTTTACTCG 58.777 45.455 0.00 0.00 0.00 4.18
349 362 4.030083 GTGTTTGTGTGAATGTGTGTTTCG 59.970 41.667 0.00 0.00 0.00 3.46
411 424 2.164624 GCGAGGTACAAGTGATGACTCT 59.835 50.000 0.00 0.00 0.00 3.24
422 435 7.337480 TGTTATTGTAGATAGCGAGGTACAA 57.663 36.000 6.35 6.35 39.16 2.41
472 485 9.575783 TCAAACCTTTGTGTGTTTTATTAAGAC 57.424 29.630 0.00 0.00 39.18 3.01
488 501 3.496331 ACATGGTAGGGTCAAACCTTTG 58.504 45.455 0.00 0.00 42.09 2.77
489 502 3.895704 ACATGGTAGGGTCAAACCTTT 57.104 42.857 0.00 0.00 42.09 3.11
490 503 3.139397 TGAACATGGTAGGGTCAAACCTT 59.861 43.478 0.00 0.00 42.09 3.50
511 524 5.363868 TGATTAGGGAGATGAGTGTACCTTG 59.636 44.000 0.00 0.00 0.00 3.61
533 546 6.196434 TGGGAATGAATCTTTGATTGGATGA 58.804 36.000 0.00 0.00 0.00 2.92
555 568 8.552034 GTGATAATAAACTCTTCCGATTCTTGG 58.448 37.037 0.00 0.00 0.00 3.61
600 615 5.749462 AGCATGCACTCTCTTTTTAGGTAT 58.251 37.500 21.98 0.00 0.00 2.73
627 642 1.135527 CCGACCTATGCAAACCGACTA 59.864 52.381 0.00 0.00 0.00 2.59
634 649 0.406361 AAACCCCCGACCTATGCAAA 59.594 50.000 0.00 0.00 0.00 3.68
757 778 1.001633 CCAGCCCGTAACACAACTACT 59.998 52.381 0.00 0.00 0.00 2.57
758 779 1.270465 ACCAGCCCGTAACACAACTAC 60.270 52.381 0.00 0.00 0.00 2.73
759 780 1.050204 ACCAGCCCGTAACACAACTA 58.950 50.000 0.00 0.00 0.00 2.24
763 784 2.863132 ATAAACCAGCCCGTAACACA 57.137 45.000 0.00 0.00 0.00 3.72
852 890 2.856988 TGGGCCTTTCGGGAGGTT 60.857 61.111 4.53 0.00 39.11 3.50
853 891 3.647771 GTGGGCCTTTCGGGAGGT 61.648 66.667 4.53 0.00 39.11 3.85
859 898 1.595093 GAATGTGGGTGGGCCTTTCG 61.595 60.000 4.53 0.00 34.45 3.46
1750 1820 2.093306 AACATCTTGCGATTCCGTCA 57.907 45.000 0.00 0.00 38.24 4.35
2110 2180 2.602217 GCCAATATTTAGAAGCCGTGCG 60.602 50.000 0.00 0.00 0.00 5.34
2359 2429 8.047310 TCTATTAATCCTTTGAAAGTCTCCACC 58.953 37.037 4.02 0.00 0.00 4.61
2566 2636 5.123227 ACAGCGGTATACTTACCTAACGTA 58.877 41.667 2.25 0.00 45.01 3.57
2595 2665 6.095300 CACAATGCCAACACATAAGATAAGGA 59.905 38.462 0.00 0.00 0.00 3.36
3036 3213 2.290641 GCGGTCCATTATTGGTAAGCTG 59.709 50.000 3.65 0.89 44.06 4.24
3049 3226 3.624777 AGAAAGATCAATTGCGGTCCAT 58.375 40.909 0.00 0.00 0.00 3.41
3090 3267 6.645790 AAGATTAATTGCATCTCCATGACC 57.354 37.500 0.00 0.00 30.19 4.02
3403 3581 4.292977 AGCAAAATCTTAAGCGGCATAC 57.707 40.909 1.45 0.00 0.00 2.39
3426 3604 0.598562 ACGTCTATGCTCATAGGCCG 59.401 55.000 13.91 16.79 41.66 6.13
3485 3663 1.699083 TGAAGGTGAACCAGCAGATGA 59.301 47.619 1.62 0.00 38.89 2.92
3775 4000 5.689383 TCAGGCTGTAGTTCAAAAATGAC 57.311 39.130 15.27 0.00 0.00 3.06
3801 4026 5.036737 GGTCAATTGCAGATATTGGAAACG 58.963 41.667 9.21 0.00 40.70 3.60
4303 4528 6.101150 TGGCATACCTGTAAGAATCCAATAGT 59.899 38.462 0.00 0.00 34.07 2.12
4346 4571 6.475504 CCCCACAATAAGATGACAGCATATA 58.524 40.000 0.00 0.00 34.11 0.86
4700 4925 1.202879 TGGTCGAACAAAGAGGGCAAT 60.203 47.619 0.00 0.00 0.00 3.56
4711 4936 1.600511 TATCGCAGGCTGGTCGAACA 61.601 55.000 18.60 1.69 35.77 3.18
4818 5046 3.129113 TCATTCACTTGCTGCGCATTAAT 59.871 39.130 12.24 0.00 38.76 1.40
4826 5054 0.593128 AACCGTCATTCACTTGCTGC 59.407 50.000 0.00 0.00 0.00 5.25
4964 5192 5.179929 GGCCCTGAAATTCAAATCAAGTTTG 59.820 40.000 0.00 0.00 46.86 2.93
4967 5195 3.261643 GGGCCCTGAAATTCAAATCAAGT 59.738 43.478 17.04 0.00 0.00 3.16
5095 5323 6.088824 GGAGAAGACAAACATAAGTTGCATG 58.911 40.000 0.00 0.00 38.17 4.06
5116 5344 9.853555 TTTACATAACATGTTGCTTAAATGGAG 57.146 29.630 21.42 0.00 41.63 3.86
5169 5397 3.431922 TGAGTCGCTATCCTAAAACCG 57.568 47.619 0.00 0.00 0.00 4.44
5266 5494 7.763172 TTTCTTGTTTCGTGCAATTGTTAAT 57.237 28.000 7.40 0.00 0.00 1.40
5268 5496 7.116376 TGTTTTTCTTGTTTCGTGCAATTGTTA 59.884 29.630 7.40 0.00 0.00 2.41
5412 5640 2.854522 GCATTCAAGCCTGTACCGT 58.145 52.632 0.00 0.00 0.00 4.83
5501 5729 5.066913 TGCTCTCCCAGATAGAGATGTAA 57.933 43.478 4.34 0.00 42.63 2.41
5659 5887 7.972277 CCTGGCTACATTGATATTTGATAATGC 59.028 37.037 0.00 0.00 34.69 3.56
5717 5945 7.388460 AGAAACAAAAATGACAAATTGGCAA 57.612 28.000 5.29 0.68 39.86 4.52
5967 6204 6.611613 ACATTCAGAAGTTGTCCTATCAGA 57.388 37.500 0.00 0.00 0.00 3.27
6208 6445 3.325425 TCAAGTGGTCGACTTTTCCCATA 59.675 43.478 16.46 0.00 42.70 2.74
6209 6446 2.105821 TCAAGTGGTCGACTTTTCCCAT 59.894 45.455 16.46 0.00 42.70 4.00
6210 6447 1.487142 TCAAGTGGTCGACTTTTCCCA 59.513 47.619 16.46 0.00 42.70 4.37
6213 6450 2.032808 GTGCTCAAGTGGTCGACTTTTC 60.033 50.000 16.46 0.00 42.70 2.29
6214 6451 1.940613 GTGCTCAAGTGGTCGACTTTT 59.059 47.619 16.46 4.79 42.70 2.27
6215 6452 1.139058 AGTGCTCAAGTGGTCGACTTT 59.861 47.619 16.46 5.15 42.70 2.66
6218 6455 2.094700 TCATAGTGCTCAAGTGGTCGAC 60.095 50.000 7.13 7.13 0.00 4.20
6284 6521 8.343787 AGAAAAGATCCCAATTATCAAGGGTTA 58.656 33.333 0.00 0.00 43.31 2.85
6422 6659 0.685097 TCAAGCGAGCTAACCCAGTT 59.315 50.000 0.00 0.00 0.00 3.16
6776 7013 4.346734 AATAAACAGCGCTTCATCACAG 57.653 40.909 7.50 0.00 0.00 3.66
6844 7085 7.757097 AGACAGAGTAAAATACTAACATGCG 57.243 36.000 0.00 0.00 39.59 4.73
7301 7542 0.768221 TGGACATAGCCTCCCCATCC 60.768 60.000 0.00 0.00 0.00 3.51
7391 7634 5.504173 GCTTTTGTCTAAGCTCACGACTTTT 60.504 40.000 10.21 0.00 45.50 2.27
7451 7694 7.119699 GGATCAATCAGTTGAACACAAGATGTA 59.880 37.037 0.00 0.00 46.67 2.29
7579 7822 2.342910 TCCGTTACGAGAAGCAAGAC 57.657 50.000 6.24 0.00 0.00 3.01
7581 7824 2.876091 TGATCCGTTACGAGAAGCAAG 58.124 47.619 6.24 0.00 0.00 4.01
7583 7826 3.306917 TTTGATCCGTTACGAGAAGCA 57.693 42.857 6.24 0.00 0.00 3.91
7595 7838 2.574322 CGTGTTGAAGCTTTTGATCCG 58.426 47.619 0.00 0.00 0.00 4.18
7628 7871 0.039256 GCTTTTCAGCACGGCAATGA 60.039 50.000 0.00 0.00 46.49 2.57
7641 7884 1.199558 CAGCTTCTGAGGCAGCTTTTC 59.800 52.381 14.45 0.00 44.28 2.29
7718 7961 6.400568 ACCTGGATGTGAATAAAAGCAAATG 58.599 36.000 0.00 0.00 0.00 2.32
7719 7962 6.610075 ACCTGGATGTGAATAAAAGCAAAT 57.390 33.333 0.00 0.00 0.00 2.32
7723 7966 3.938963 TCGACCTGGATGTGAATAAAAGC 59.061 43.478 0.00 0.00 0.00 3.51
7735 7978 0.391263 GCTTTCGGTTCGACCTGGAT 60.391 55.000 0.00 0.00 35.66 3.41
7760 8003 7.765695 TGATCTTTTCCTGCAAGTTCTTATT 57.234 32.000 0.00 0.00 0.00 1.40
7781 8024 3.448660 TCACCAGTCGAGTGATCAATGAT 59.551 43.478 21.92 0.00 39.29 2.45
7933 8176 0.609151 TACGCCATTCCCGTTCTTCA 59.391 50.000 0.00 0.00 39.88 3.02
7978 8221 0.820226 TCTTGTCATCAGCCTCCTCG 59.180 55.000 0.00 0.00 0.00 4.63
8119 8362 3.290710 CAAAGGCCAGTAAGCATATGGT 58.709 45.455 5.01 0.40 36.43 3.55
8167 8410 2.510238 GCCGACTGCTTGCGATCT 60.510 61.111 0.00 0.00 36.87 2.75
8185 8428 2.124570 CTAGCCATGCCCTTGCGT 60.125 61.111 0.00 0.00 41.78 5.24
8200 8443 3.885724 TTCGCCATCTTCATGACACTA 57.114 42.857 0.00 0.00 30.57 2.74
8305 8558 1.183549 TTTCCTACAGCCTCGTCTCC 58.816 55.000 0.00 0.00 0.00 3.71
8306 8559 3.528597 AATTTCCTACAGCCTCGTCTC 57.471 47.619 0.00 0.00 0.00 3.36
8307 8560 3.983044 AAATTTCCTACAGCCTCGTCT 57.017 42.857 0.00 0.00 0.00 4.18
8308 8561 4.215613 ACAAAAATTTCCTACAGCCTCGTC 59.784 41.667 0.00 0.00 0.00 4.20
8309 8562 4.142038 ACAAAAATTTCCTACAGCCTCGT 58.858 39.130 0.00 0.00 0.00 4.18
8322 8575 7.340999 ACCCTCACTGTACAGTTACAAAAATTT 59.659 33.333 25.89 0.00 40.20 1.82
8414 8667 4.681483 GGAAGCAGTCAAAATTTTCCTTCG 59.319 41.667 0.00 0.00 33.12 3.79
8437 8690 1.250840 CCTTCAGGAAAAAGCCCGGG 61.251 60.000 19.09 19.09 37.39 5.73
8505 8758 8.660373 GTCGATCTGAATCTGAAAGTACAAAAT 58.340 33.333 0.00 0.00 33.76 1.82
8528 8782 6.043327 TCAAACTACAACATGTTTCAGTCG 57.957 37.500 17.83 13.53 34.60 4.18
8537 8791 6.072008 TCCACCATCAATCAAACTACAACATG 60.072 38.462 0.00 0.00 0.00 3.21
8538 8792 6.009589 TCCACCATCAATCAAACTACAACAT 58.990 36.000 0.00 0.00 0.00 2.71
8546 8800 8.776376 ATTTTACATTCCACCATCAATCAAAC 57.224 30.769 0.00 0.00 0.00 2.93
8593 8848 5.758296 TTGGCTGACAAACTAGACAAACTAG 59.242 40.000 0.00 0.00 38.90 2.57
8622 8877 2.202987 CGTCCATGGCAGAGAGGC 60.203 66.667 6.96 0.00 44.50 4.70
8668 8923 0.744771 GCGGGTTCAGATCTTCCCAC 60.745 60.000 20.60 11.74 39.87 4.61
8737 8992 4.643387 AGAAACTTGCCGCCGCCT 62.643 61.111 0.00 0.00 0.00 5.52
8771 9026 1.562783 CCTCCTCTTTCTCCTTCCGT 58.437 55.000 0.00 0.00 0.00 4.69
8773 9028 1.959710 ACCCTCCTCTTTCTCCTTCC 58.040 55.000 0.00 0.00 0.00 3.46
8788 9043 0.251653 TGAGCACGGAGAAGTACCCT 60.252 55.000 0.00 0.00 0.00 4.34
8792 9047 1.880894 CGGTGAGCACGGAGAAGTA 59.119 57.895 2.40 0.00 34.05 2.24
8800 9055 1.101635 TCTCTATCCCGGTGAGCACG 61.102 60.000 0.00 0.00 0.00 5.34
8812 9067 2.006056 GCGCCAGCCATCATCTCTATC 61.006 57.143 0.00 0.00 37.42 2.08
8813 9068 0.036577 GCGCCAGCCATCATCTCTAT 60.037 55.000 0.00 0.00 37.42 1.98
8835 9090 3.127533 GCTGCCGGTCATCACCAC 61.128 66.667 1.90 0.00 44.02 4.16
8836 9091 3.610619 CTGCTGCCGGTCATCACCA 62.611 63.158 1.90 0.00 44.02 4.17
8902 9157 1.293179 CACCCACTCGATGTGCTCA 59.707 57.895 8.85 0.00 44.92 4.26
8906 9161 0.738762 CAGAGCACCCACTCGATGTG 60.739 60.000 7.72 7.72 45.80 3.21
8912 9167 0.246086 CAGAGTCAGAGCACCCACTC 59.754 60.000 0.00 2.85 36.32 3.51
8927 9182 7.982224 TGCAAGATTATTCATTTCACTCAGAG 58.018 34.615 0.00 0.00 0.00 3.35
8928 9183 7.926674 TGCAAGATTATTCATTTCACTCAGA 57.073 32.000 0.00 0.00 0.00 3.27
8929 9184 7.861372 GGATGCAAGATTATTCATTTCACTCAG 59.139 37.037 0.00 0.00 0.00 3.35
8930 9185 7.201848 GGGATGCAAGATTATTCATTTCACTCA 60.202 37.037 0.00 0.00 0.00 3.41
8931 9186 7.014038 AGGGATGCAAGATTATTCATTTCACTC 59.986 37.037 0.00 0.00 0.00 3.51
8932 9187 6.837568 AGGGATGCAAGATTATTCATTTCACT 59.162 34.615 0.00 0.00 0.00 3.41
8933 9188 7.047460 AGGGATGCAAGATTATTCATTTCAC 57.953 36.000 0.00 0.00 0.00 3.18
8934 9189 7.342541 TGAAGGGATGCAAGATTATTCATTTCA 59.657 33.333 0.00 0.00 0.00 2.69
8935 9190 7.719483 TGAAGGGATGCAAGATTATTCATTTC 58.281 34.615 0.00 0.00 0.00 2.17
8936 9191 7.664552 TGAAGGGATGCAAGATTATTCATTT 57.335 32.000 0.00 0.00 0.00 2.32
8961 9216 3.820689 GCAAATGCGACAGACAATAACA 58.179 40.909 0.00 0.00 0.00 2.41
8985 9241 0.798776 CACGGTCCAGAGCAACATTC 59.201 55.000 0.00 0.00 0.00 2.67
9079 9341 9.148104 ACGTTTCAATCTAACAAATACTCCTAC 57.852 33.333 0.00 0.00 0.00 3.18
9080 9342 9.146984 CACGTTTCAATCTAACAAATACTCCTA 57.853 33.333 0.00 0.00 0.00 2.94
9081 9343 7.360946 GCACGTTTCAATCTAACAAATACTCCT 60.361 37.037 0.00 0.00 0.00 3.69
9082 9344 6.741358 GCACGTTTCAATCTAACAAATACTCC 59.259 38.462 0.00 0.00 0.00 3.85
9083 9345 7.478667 CAGCACGTTTCAATCTAACAAATACTC 59.521 37.037 0.00 0.00 0.00 2.59
9084 9346 7.041372 ACAGCACGTTTCAATCTAACAAATACT 60.041 33.333 0.00 0.00 0.00 2.12
9173 9435 7.743749 ACACATAAGCATCCTAGATTCTCATT 58.256 34.615 0.00 0.00 0.00 2.57
9174 9436 7.313740 ACACATAAGCATCCTAGATTCTCAT 57.686 36.000 0.00 0.00 0.00 2.90
9175 9437 6.737720 ACACATAAGCATCCTAGATTCTCA 57.262 37.500 0.00 0.00 0.00 3.27
9176 9438 7.661968 TGTACACATAAGCATCCTAGATTCTC 58.338 38.462 0.00 0.00 0.00 2.87
9177 9439 7.603180 TGTACACATAAGCATCCTAGATTCT 57.397 36.000 0.00 0.00 0.00 2.40
9209 9471 6.738832 ATGCACAACATCATCAGCTATATC 57.261 37.500 0.00 0.00 31.52 1.63
9210 9472 8.803397 AATATGCACAACATCATCAGCTATAT 57.197 30.769 0.00 0.00 40.38 0.86
9211 9473 7.063780 CGAATATGCACAACATCATCAGCTATA 59.936 37.037 0.00 0.00 40.38 1.31
9212 9474 6.128363 CGAATATGCACAACATCATCAGCTAT 60.128 38.462 0.00 0.00 40.38 2.97
9213 9475 5.178067 CGAATATGCACAACATCATCAGCTA 59.822 40.000 0.00 0.00 40.38 3.32
9214 9476 4.024302 CGAATATGCACAACATCATCAGCT 60.024 41.667 0.00 0.00 40.38 4.24
9215 9477 4.216731 CGAATATGCACAACATCATCAGC 58.783 43.478 0.00 0.00 40.38 4.26
9226 9488 4.578105 TGCAATTATGTCCGAATATGCACA 59.422 37.500 0.00 0.00 37.61 4.57
9236 9498 4.621068 ACATCAACTGCAATTATGTCCG 57.379 40.909 0.00 0.00 0.00 4.79
9246 9508 4.325972 TCTTTGCATCTACATCAACTGCA 58.674 39.130 0.00 0.00 40.79 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.