AutoCloner

Multiple sequence alignment - TraesCS6A01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G341200	chr6A	100.000	3502	0	0	1	3502	574222965	574219464	0.000000e+00	6468.0
1	TraesCS6A01G341200	chr6A	96.268	2251	77	4	501	2751	573636096	573638339	0.000000e+00	3685.0
2	TraesCS6A01G341200	chr6A	87.287	1880	188	18	821	2696	613092215	613090383	0.000000e+00	2100.0
3	TraesCS6A01G341200	chr6A	91.304	69	6	0	2840	2908	573638545	573638613	1.030000e-15	95.3
4	TraesCS6A01G341200	chr6B	96.353	2303	60	12	501	2792	646010411	646008122	0.000000e+00	3766.0
5	TraesCS6A01G341200	chr6B	94.807	2253	107	8	501	2752	645653275	645655518	0.000000e+00	3504.0
6	TraesCS6A01G341200	chr6B	87.269	2160	216	30	555	2696	711739654	711737536	0.000000e+00	2410.0
7	TraesCS6A01G341200	chr6B	84.002	1819	240	30	662	2469	615087986	615086208	0.000000e+00	1700.0
8	TraesCS6A01G341200	chr6B	85.068	1681	216	21	798	2469	704155640	704153986	0.000000e+00	1681.0
9	TraesCS6A01G341200	chr6B	83.002	1859	257	36	675	2514	199741330	199743148	0.000000e+00	1628.0
10	TraesCS6A01G341200	chr6B	95.164	517	24	1	2790	3305	646007928	646007412	0.000000e+00	815.0
11	TraesCS6A01G341200	chr6B	94.089	203	5	2	1	197	646011816	646011615	5.680000e-78	302.0
12	TraesCS6A01G341200	chr6B	93.532	201	12	1	3299	3498	646006765	646006565	7.350000e-77	298.0
13	TraesCS6A01G341200	chr6D	94.107	2274	106	15	501	2762	428960049	428962306	0.000000e+00	3432.0
14	TraesCS6A01G341200	chr6D	85.054	1666	217	19	811	2469	461820157	461818517	0.000000e+00	1668.0
15	TraesCS6A01G341200	chr6D	87.308	717	85	3	1803	2513	466524959	466525675	0.000000e+00	815.0
16	TraesCS6A01G341200	chr6D	94.118	68	4	0	2840	2907	428962501	428962568	1.720000e-18	104.0
17	TraesCS6A01G341200	chr3B	86.243	1890	224	14	632	2512	197792012	197790150	0.000000e+00	2017.0
18	TraesCS6A01G341200	chr7A	89.333	75	7	1	3088	3162	381256395	381256468	3.720000e-15	93.5
19	TraesCS6A01G341200	chr7D	88.000	75	8	1	3088	3162	312456986	312456913	1.730000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G341200	chr6A	574219464	574222965	3501	True	6468.00	6468	100.0000	1	3502	1	chr6A.!!$R1	3501
1	TraesCS6A01G341200	chr6A	613090383	613092215	1832	True	2100.00	2100	87.2870	821	2696	1	chr6A.!!$R2	1875
2	TraesCS6A01G341200	chr6A	573636096	573638613	2517	False	1890.15	3685	93.7860	501	2908	2	chr6A.!!$F1	2407
3	TraesCS6A01G341200	chr6B	645653275	645655518	2243	False	3504.00	3504	94.8070	501	2752	1	chr6B.!!$F2	2251
4	TraesCS6A01G341200	chr6B	711737536	711739654	2118	True	2410.00	2410	87.2690	555	2696	1	chr6B.!!$R3	2141
5	TraesCS6A01G341200	chr6B	615086208	615087986	1778	True	1700.00	1700	84.0020	662	2469	1	chr6B.!!$R1	1807
6	TraesCS6A01G341200	chr6B	704153986	704155640	1654	True	1681.00	1681	85.0680	798	2469	1	chr6B.!!$R2	1671
7	TraesCS6A01G341200	chr6B	199741330	199743148	1818	False	1628.00	1628	83.0020	675	2514	1	chr6B.!!$F1	1839
8	TraesCS6A01G341200	chr6B	646006565	646011816	5251	True	1295.25	3766	94.7845	1	3498	4	chr6B.!!$R4	3497
9	TraesCS6A01G341200	chr6D	428960049	428962568	2519	False	1768.00	3432	94.1125	501	2907	2	chr6D.!!$F2	2406
10	TraesCS6A01G341200	chr6D	461818517	461820157	1640	True	1668.00	1668	85.0540	811	2469	1	chr6D.!!$R1	1658
11	TraesCS6A01G341200	chr6D	466524959	466525675	716	False	815.00	815	87.3080	1803	2513	1	chr6D.!!$F1	710
12	TraesCS6A01G341200	chr3B	197790150	197792012	1862	True	2017.00	2017	86.2430	632	2512	1	chr3B.!!$R1	1880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
388	790	0.253044	CCCATCCGTGACACCATTCT	59.747	55.0	0.0	0.0	0.00	2.40	F
1868	2893	0.178967	TGCAGATTTGGGTCAAGCCA	60.179	50.0	0.0	0.0	39.65	4.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2090	3135	1.171308	CCTGCATTTGGTCAGGTCAG	58.829	55.0	0.0	0.0	43.66	3.51	R
3182	4627	0.687354	ACGGCAGTTCCAACTCTGAT	59.313	50.0	0.0	0.0	37.08	2.90	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	0.747255	TTGAGAGTCGGCTATGAGGC	59.253	55.000	0.00	0.00	37.44	4.70
36	37	5.106948	CGGCTATGAGGCAAAAGTATATGTG	60.107	44.000	0.72	0.00	41.44	3.21
49	50	6.650427	AAGTATATGTGCACGAGGATAGAA	57.350	37.500	13.13	0.00	0.00	2.10
197	204	3.551082	TGAATTCTTTTGTTTGCGCACTG	59.449	39.130	11.12	0.00	0.00	3.66
198	205	1.276415	TTCTTTTGTTTGCGCACTGC	58.724	45.000	11.12	3.46	46.70	4.40
208	215	3.777925	CGCACTGCAGCCACGTAC	61.778	66.667	15.27	0.00	0.00	3.67
209	216	3.423154	GCACTGCAGCCACGTACC	61.423	66.667	15.27	0.00	0.00	3.34
210	217	2.742372	CACTGCAGCCACGTACCC	60.742	66.667	15.27	0.00	0.00	3.69
211	218	4.373116	ACTGCAGCCACGTACCCG	62.373	66.667	15.27	0.00	40.83	5.28
221	228	2.412112	CGTACCCGTGAGCTAGGC	59.588	66.667	0.00	0.00	0.00	3.93
301	703	0.892063	AGGGAACGTCTGAGAAGCTC	59.108	55.000	0.00	0.00	0.00	4.09
302	704	0.456995	GGGAACGTCTGAGAAGCTCG	60.457	60.000	0.00	0.00	32.35	5.03
303	705	0.456995	GGAACGTCTGAGAAGCTCGG	60.457	60.000	0.00	0.00	38.15	4.63
304	706	0.456995	GAACGTCTGAGAAGCTCGGG	60.457	60.000	3.64	0.00	37.46	5.14
305	707	2.202676	CGTCTGAGAAGCTCGGGC	60.203	66.667	0.00	0.00	38.04	6.13
306	708	2.973899	GTCTGAGAAGCTCGGGCA	59.026	61.111	11.40	0.00	40.79	5.36
307	709	1.446966	GTCTGAGAAGCTCGGGCAC	60.447	63.158	11.40	2.56	40.79	5.01
308	710	2.507992	CTGAGAAGCTCGGGCACG	60.508	66.667	11.40	0.00	41.70	5.34
319	721	2.824041	GGGCACGATGGCACGAAT	60.824	61.111	14.63	0.00	45.76	3.34
320	722	2.709475	GGCACGATGGCACGAATC	59.291	61.111	14.63	0.00	43.14	2.52
321	723	2.106074	GGCACGATGGCACGAATCA	61.106	57.895	14.63	0.00	43.14	2.57
322	724	1.349627	GCACGATGGCACGAATCAG	59.650	57.895	14.63	0.00	37.03	2.90
323	725	1.083806	GCACGATGGCACGAATCAGA	61.084	55.000	14.63	0.00	37.03	3.27
324	726	1.358877	CACGATGGCACGAATCAGAA	58.641	50.000	14.63	0.00	37.03	3.02
325	727	1.325640	CACGATGGCACGAATCAGAAG	59.674	52.381	14.63	0.00	37.03	2.85
326	728	0.302890	CGATGGCACGAATCAGAAGC	59.697	55.000	0.00	0.00	35.09	3.86
367	769	2.974041	AATCGCGGGTTGGGCCTTA	61.974	57.895	6.13	0.00	37.43	2.69
382	784	0.462047	CCTTAGCCCATCCGTGACAC	60.462	60.000	0.00	0.00	0.00	3.67
388	790	0.253044	CCCATCCGTGACACCATTCT	59.747	55.000	0.00	0.00	0.00	2.40
392	794	1.348064	TCCGTGACACCATTCTTCCT	58.652	50.000	0.00	0.00	0.00	3.36
393	795	1.275291	TCCGTGACACCATTCTTCCTC	59.725	52.381	0.00	0.00	0.00	3.71
394	796	1.350193	CGTGACACCATTCTTCCTCG	58.650	55.000	0.00	0.00	0.00	4.63
432	875	1.700739	ACATAACGGTGACCCCTCAAA	59.299	47.619	0.00	0.00	0.00	2.69
433	876	2.106857	ACATAACGGTGACCCCTCAAAA	59.893	45.455	0.00	0.00	0.00	2.44
434	877	2.554370	TAACGGTGACCCCTCAAAAG	57.446	50.000	0.00	0.00	0.00	2.27
493	941	1.556911	AGCAGGGTTTCGTCATCAGAT	59.443	47.619	0.00	0.00	0.00	2.90
921	1938	1.512926	ACATTGTGGAGCGACTTGAC	58.487	50.000	0.00	0.00	0.00	3.18
1172	2192	1.473278	CTACTTGGGAGACGAGTCCAC	59.527	57.143	9.54	0.00	42.94	4.02
1297	2317	1.620739	GCTCACTCATGGGAGGCAGA	61.621	60.000	0.00	0.00	45.81	4.26
1759	2781	6.708949	GGTTAGTGAAGGTTCTCAATGTTGTA	59.291	38.462	0.00	0.00	0.00	2.41
1868	2893	0.178967	TGCAGATTTGGGTCAAGCCA	60.179	50.000	0.00	0.00	39.65	4.75
1896	2921	3.496884	TCGAAGACAATTGTTACCAGTGC	59.503	43.478	13.36	0.00	0.00	4.40
1898	2923	4.611355	CGAAGACAATTGTTACCAGTGCTG	60.611	45.833	13.36	0.00	0.00	4.41
1949	2974	8.716646	TTAACATTTCTGAAGAATGCGATCTA	57.283	30.769	2.73	0.00	33.54	1.98
2073	3104	3.131046	ACTTTGAAGTTCAAACCTGCTGG	59.869	43.478	23.91	15.71	41.02	4.85
2088	3133	3.274288	CTGCTGGGTCCAGTTAAGAATC	58.726	50.000	17.28	0.39	45.24	2.52
2090	3135	3.055094	TGCTGGGTCCAGTTAAGAATCTC	60.055	47.826	17.28	0.00	45.24	2.75
2365	3415	3.038017	CAGTGTGTGAGAATTGCAAACG	58.962	45.455	1.71	0.00	0.00	3.60
2756	3822	5.113383	TGTGAAATCGCTAACATTACCGAT	58.887	37.500	0.00	0.00	41.63	4.18
2783	3849	1.079888	CAATGCCGGCTCCCAAAAC	60.080	57.895	29.70	0.00	0.00	2.43
2784	3850	1.532794	AATGCCGGCTCCCAAAACA	60.533	52.632	29.70	3.35	0.00	2.83
2785	3851	1.535204	AATGCCGGCTCCCAAAACAG	61.535	55.000	29.70	0.00	0.00	3.16
2786	3852	2.282180	GCCGGCTCCCAAAACAGA	60.282	61.111	22.15	0.00	0.00	3.41
2787	3853	2.626780	GCCGGCTCCCAAAACAGAC	61.627	63.158	22.15	0.00	0.00	3.51
2788	3854	1.228124	CCGGCTCCCAAAACAGACA	60.228	57.895	0.00	0.00	0.00	3.41
2799	4062	8.560374	GCTCCCAAAACAGACATAGTATTTATC	58.440	37.037	0.00	0.00	0.00	1.75
2848	4292	1.851065	TATGGAGCTGCACTTGCCCA	61.851	55.000	11.23	0.00	41.18	5.36
2872	4316	3.067106	ACCTCTGTCAGCAATACAAACG	58.933	45.455	0.00	0.00	0.00	3.60
3030	4474	6.203530	ACTTAAAAACCCTAAAGCAGACGTAC	59.796	38.462	0.00	0.00	0.00	3.67
3085	4529	2.030007	TGAACCGTTCGGTATTTCGTCT	60.030	45.455	17.21	0.00	37.57	4.18
3111	4555	9.984190	TGTTCAACTAAAACTTAACAAAAACCT	57.016	25.926	0.00	0.00	0.00	3.50
3174	4619	2.637025	CACCTTTGTTGCCGTCCG	59.363	61.111	0.00	0.00	0.00	4.79
3182	4627	2.281139	TTGCCGTCCGTGCAATCA	60.281	55.556	10.19	0.00	43.36	2.57
3196	4641	3.755378	GTGCAATCATCAGAGTTGGAACT	59.245	43.478	0.00	0.00	43.16	3.01
3197	4642	3.754850	TGCAATCATCAGAGTTGGAACTG	59.245	43.478	0.00	0.00	39.88	3.16
3217	4662	1.586564	CGTCGAGGCCTTTCTAGCG	60.587	63.158	6.77	4.49	0.00	4.26
3262	4707	4.641645	TTGCCTGGTCACCGCCTG	62.642	66.667	0.00	0.00	0.00	4.85
3305	4750	3.210012	TTCCTCCTGGGCCTTGTGC	62.210	63.158	4.53	0.00	40.16	4.57
3361	5460	4.766632	CCTGCCCTTCCCCTTGCC	62.767	72.222	0.00	0.00	0.00	4.52
3408	5507	3.892588	GACGATTCCTCCTCTATCTTGGT	59.107	47.826	0.00	0.00	0.00	3.67
3417	5516	3.052109	TCCTCTATCTTGGTAAGCTCCCA	60.052	47.826	1.02	1.02	0.00	4.37
3450	5549	4.406173	CGCCGCACAGACGTCTCT	62.406	66.667	16.96	0.00	0.00	3.10
3464	5563	1.152631	TCTCTGTGGTGGTGACGGA	60.153	57.895	0.00	0.00	0.00	4.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	0.395724	TGCCTCATAGCCGACTCTCA	60.396	55.000	0.00	0.00	0.00	3.27
23	24	5.991328	ATCCTCGTGCACATATACTTTTG	57.009	39.130	18.64	0.00	0.00	2.44
36	37	1.828832	CGTGACTTCTATCCTCGTGC	58.171	55.000	0.00	0.00	0.00	5.34
49	50	1.816863	AACATCTCCGGTGCGTGACT	61.817	55.000	0.00	0.00	0.00	3.41
96	97	2.821366	GCCATGGCGTCACCTCTG	60.821	66.667	23.48	0.00	40.22	3.35
117	118	2.772691	CGCCACCTCCTAGTCGGTC	61.773	68.421	0.00	0.00	0.00	4.79
204	211	2.119655	AGCCTAGCTCACGGGTACG	61.120	63.158	0.00	0.00	39.78	3.67
205	212	1.035932	TCAGCCTAGCTCACGGGTAC	61.036	60.000	0.00	0.00	36.40	3.34
206	213	0.323999	TTCAGCCTAGCTCACGGGTA	60.324	55.000	0.00	0.00	36.40	3.69
207	214	1.609501	TTCAGCCTAGCTCACGGGT	60.610	57.895	0.00	0.00	36.40	5.28
208	215	1.153549	GTTCAGCCTAGCTCACGGG	60.154	63.158	0.00	0.00	36.40	5.28
209	216	0.179124	GAGTTCAGCCTAGCTCACGG	60.179	60.000	0.00	0.00	36.40	4.94
210	217	0.524392	CGAGTTCAGCCTAGCTCACG	60.524	60.000	0.00	0.00	36.40	4.35
211	218	0.528470	ACGAGTTCAGCCTAGCTCAC	59.472	55.000	0.00	0.00	36.40	3.51
212	219	1.257743	AACGAGTTCAGCCTAGCTCA	58.742	50.000	0.00	0.00	36.40	4.26
240	247	9.433153	GTGGTAACTACTAAAAGACTAAGCAAT	57.567	33.333	0.00	0.00	37.61	3.56
243	250	8.822652	TTGTGGTAACTACTAAAAGACTAAGC	57.177	34.615	0.00	0.00	37.61	3.09
244	251	9.420551	CCTTGTGGTAACTACTAAAAGACTAAG	57.579	37.037	5.06	0.00	34.89	2.18
247	254	7.370905	ACCTTGTGGTAACTACTAAAAGACT	57.629	36.000	5.06	0.00	46.43	3.24
302	704	2.823829	GATTCGTGCCATCGTGCCC	61.824	63.158	0.00	0.00	0.00	5.36
303	705	2.040213	CTGATTCGTGCCATCGTGCC	62.040	60.000	0.00	0.00	0.00	5.01
304	706	1.083806	TCTGATTCGTGCCATCGTGC	61.084	55.000	0.00	0.00	0.00	5.34
305	707	1.325640	CTTCTGATTCGTGCCATCGTG	59.674	52.381	0.00	0.00	0.00	4.35
306	708	1.645034	CTTCTGATTCGTGCCATCGT	58.355	50.000	0.00	0.00	0.00	3.73
307	709	0.302890	GCTTCTGATTCGTGCCATCG	59.697	55.000	0.00	0.00	0.00	3.84
308	710	1.661341	AGCTTCTGATTCGTGCCATC	58.339	50.000	0.00	0.00	0.00	3.51
309	711	2.119801	AAGCTTCTGATTCGTGCCAT	57.880	45.000	0.00	0.00	0.00	4.40
310	712	1.896220	AAAGCTTCTGATTCGTGCCA	58.104	45.000	0.00	0.00	0.00	4.92
311	713	2.997485	AAAAGCTTCTGATTCGTGCC	57.003	45.000	0.00	0.00	0.00	5.01
334	736	1.726791	GCGATTGCAGTCTCTTTCGAA	59.273	47.619	7.68	0.00	42.15	3.71
343	745	2.480555	CAACCCGCGATTGCAGTC	59.519	61.111	8.23	0.00	42.97	3.51
367	769	1.852157	AATGGTGTCACGGATGGGCT	61.852	55.000	0.00	0.00	0.00	5.19
382	784	1.495878	CTGCGATCGAGGAAGAATGG	58.504	55.000	21.57	0.00	0.00	3.16
388	790	3.074369	TGGCCTGCGATCGAGGAA	61.074	61.111	27.27	16.41	31.48	3.36
392	794	2.049767	TACTGTGGCCTGCGATCGA	61.050	57.895	21.57	3.01	0.00	3.59
393	795	1.878522	GTACTGTGGCCTGCGATCG	60.879	63.158	11.69	11.69	0.00	3.69
394	796	1.084370	GTGTACTGTGGCCTGCGATC	61.084	60.000	3.32	0.00	0.00	3.69
432	875	5.321927	AGGGATCACCGTTATGTTTTTCTT	58.678	37.500	0.00	0.00	46.96	2.52
433	876	4.918588	AGGGATCACCGTTATGTTTTTCT	58.081	39.130	0.00	0.00	46.96	2.52
434	877	5.065602	GGTAGGGATCACCGTTATGTTTTTC	59.934	44.000	0.00	0.00	46.96	2.29
473	921	0.976641	TCTGATGACGAAACCCTGCT	59.023	50.000	0.00	0.00	0.00	4.24
1172	2192	3.304928	GGCAACAGTCTGACCAATGAAAG	60.305	47.826	6.91	0.00	0.00	2.62
1297	2317	5.188434	ACACGAATCAAGGAATGACATGAT	58.812	37.500	0.00	0.00	41.93	2.45
1759	2781	3.630312	ACCAAAACTTACGCACATCACTT	59.370	39.130	0.00	0.00	0.00	3.16
1868	2893	4.995487	GGTAACAATTGTCTTCGACCTTCT	59.005	41.667	12.39	0.00	0.00	2.85
1949	2974	8.960591	CCTTGAAGTATGAACATTATCCAAGTT	58.039	33.333	0.00	0.00	0.00	2.66
2073	3104	4.468153	AGGTCAGAGATTCTTAACTGGACC	59.532	45.833	0.00	0.00	34.30	4.46
2088	3133	2.082231	CTGCATTTGGTCAGGTCAGAG	58.918	52.381	0.00	0.00	0.00	3.35
2090	3135	1.171308	CCTGCATTTGGTCAGGTCAG	58.829	55.000	0.00	0.00	43.66	3.51
2365	3415	2.993008	TCCACTCCTGGAGCATGC	59.007	61.111	23.43	10.51	42.15	4.06
2527	3582	2.035312	AGCTTGCAGCCCCTCAAG	59.965	61.111	4.77	0.00	43.77	3.02
2756	3822	1.451927	GCCGGCATTGGAGATGTCA	60.452	57.895	24.80	0.00	0.00	3.58
2783	3849	8.755941	CAAAGTCGTGGATAAATACTATGTCTG	58.244	37.037	0.00	0.00	0.00	3.51
2784	3850	8.692710	TCAAAGTCGTGGATAAATACTATGTCT	58.307	33.333	0.00	0.00	0.00	3.41
2785	3851	8.753175	GTCAAAGTCGTGGATAAATACTATGTC	58.247	37.037	0.00	0.00	0.00	3.06
2786	3852	7.434307	CGTCAAAGTCGTGGATAAATACTATGT	59.566	37.037	0.00	0.00	0.00	2.29
2787	3853	7.567048	GCGTCAAAGTCGTGGATAAATACTATG	60.567	40.741	0.00	0.00	0.00	2.23
2788	3854	6.420008	GCGTCAAAGTCGTGGATAAATACTAT	59.580	38.462	0.00	0.00	0.00	2.12
2799	4062	0.878523	TGGAAGCGTCAAAGTCGTGG	60.879	55.000	1.14	0.00	0.00	4.94
2848	4292	5.505654	CGTTTGTATTGCTGACAGAGGTTTT	60.506	40.000	6.65	0.00	0.00	2.43
2872	4316	3.159472	ACGGAGGTTTGGGGTAATTTTC	58.841	45.455	0.00	0.00	0.00	2.29
2918	4362	5.301805	TCTGCATGATATTTGTCCGTCTCTA	59.698	40.000	0.00	0.00	0.00	2.43
2924	4368	3.470709	AGGTCTGCATGATATTTGTCCG	58.529	45.455	0.00	0.00	0.00	4.79
3014	4458	3.448686	CATGAGTACGTCTGCTTTAGGG	58.551	50.000	0.00	0.00	0.00	3.53
3030	4474	8.697846	ATCTCAAATTTTGTATGTTGCATGAG	57.302	30.769	8.89	0.00	33.61	2.90
3085	4529	9.984190	AGGTTTTTGTTAAGTTTTAGTTGAACA	57.016	25.926	0.00	0.00	0.00	3.18
3109	4553	3.942748	TGCCCGCTACAAATTACTTTAGG	59.057	43.478	0.00	0.00	0.00	2.69
3111	4555	4.393680	CACTGCCCGCTACAAATTACTTTA	59.606	41.667	0.00	0.00	0.00	1.85
3174	4619	3.755378	AGTTCCAACTCTGATGATTGCAC	59.245	43.478	0.00	0.00	32.86	4.57
3182	4627	0.687354	ACGGCAGTTCCAACTCTGAT	59.313	50.000	0.00	0.00	37.08	2.90
3361	5460	2.183555	GACACCGCCTTACCTCCG	59.816	66.667	0.00	0.00	0.00	4.63
3394	5493	3.576550	GGGAGCTTACCAAGATAGAGGAG	59.423	52.174	3.70	0.00	0.00	3.69
3408	5507	1.813859	CCACGTCGATGGGAGCTTA	59.186	57.895	8.91	0.00	35.95	3.09
3417	5516	4.547905	CGCCTACGCCACGTCGAT	62.548	66.667	0.00	0.00	41.54	3.59

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.