Multiple sequence alignment - TraesCS6A01G341000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G341000 chr6A 100.000 3039 0 0 1 3039 573862709 573859671 0.000000e+00 5613.0
1 TraesCS6A01G341000 chr6A 100.000 181 0 0 1251 1431 573861370 573861190 4.850000e-88 335.0
2 TraesCS6A01G341000 chr6A 100.000 181 0 0 1340 1520 573861459 573861279 4.850000e-88 335.0
3 TraesCS6A01G341000 chr6A 100.000 92 0 0 1251 1342 573861281 573861190 1.450000e-38 171.0
4 TraesCS6A01G341000 chr6A 100.000 92 0 0 1429 1520 573861459 573861368 1.450000e-38 171.0
5 TraesCS6A01G341000 chr6B 93.358 1325 63 11 40 1342 645817086 645815765 0.000000e+00 1936.0
6 TraesCS6A01G341000 chr6B 94.812 1118 51 3 1429 2539 645815856 645814739 0.000000e+00 1736.0
7 TraesCS6A01G341000 chr6B 75.614 570 103 18 40 576 199083034 199082468 1.810000e-62 250.0
8 TraesCS6A01G341000 chr6B 82.770 296 35 6 186 465 285243222 285242927 1.810000e-62 250.0
9 TraesCS6A01G341000 chr6B 98.913 92 1 0 1340 1431 645815856 645815765 6.740000e-37 165.0
10 TraesCS6A01G341000 chr6B 96.341 82 3 0 2537 2618 645814710 645814629 5.290000e-28 135.0
11 TraesCS6A01G341000 chr1D 90.634 363 28 6 2624 2984 172052234 172051876 7.620000e-131 477.0
12 TraesCS6A01G341000 chr1D 86.592 358 38 4 2630 2977 28576691 28577048 1.320000e-103 387.0
13 TraesCS6A01G341000 chr4A 83.521 443 59 6 37 465 585615395 585614953 4.720000e-108 401.0
14 TraesCS6A01G341000 chr7D 86.872 358 37 5 2630 2977 584571894 584572251 2.840000e-105 392.0
15 TraesCS6A01G341000 chr7D 79.864 442 73 9 40 465 318805813 318806254 2.940000e-80 309.0
16 TraesCS6A01G341000 chr7D 79.452 292 42 6 303 576 369183223 369182932 1.110000e-44 191.0
17 TraesCS6A01G341000 chr5D 86.351 359 38 5 2630 2977 510914090 510913732 6.150000e-102 381.0
18 TraesCS6A01G341000 chr5D 82.273 440 58 11 40 463 422469090 422468655 2.230000e-96 363.0
19 TraesCS6A01G341000 chr5D 81.972 355 58 3 983 1337 505401253 505401601 2.290000e-76 296.0
20 TraesCS6A01G341000 chr5D 83.673 245 35 3 968 1211 505410030 505410270 3.050000e-55 226.0
21 TraesCS6A01G341000 chr5D 81.509 265 44 5 947 1209 505461487 505461748 2.370000e-51 213.0
22 TraesCS6A01G341000 chr5D 82.917 240 35 1 968 1207 505455893 505456126 8.540000e-51 211.0
23 TraesCS6A01G341000 chr5D 83.186 226 36 2 983 1207 505420664 505420888 3.970000e-49 206.0
24 TraesCS6A01G341000 chr5D 81.739 230 39 3 980 1207 505429031 505429259 4.000000e-44 189.0
25 TraesCS6A01G341000 chr5D 85.806 155 22 0 1043 1197 505347624 505347778 6.740000e-37 165.0
26 TraesCS6A01G341000 chr5D 84.242 165 24 2 1043 1206 505368039 505368202 3.140000e-35 159.0
27 TraesCS6A01G341000 chr5D 71.769 503 127 11 1592 2086 505364175 505364670 8.840000e-26 128.0
28 TraesCS6A01G341000 chr5D 81.343 134 21 2 48 180 495749810 495749940 4.140000e-19 106.0
29 TraesCS6A01G341000 chr5D 75.661 189 28 13 406 576 368251620 368251808 9.030000e-11 78.7
30 TraesCS6A01G341000 chr1A 86.351 359 38 6 2630 2977 143816930 143817288 6.150000e-102 381.0
31 TraesCS6A01G341000 chr1A 80.645 155 19 7 301 446 22557097 22557249 3.200000e-20 110.0
32 TraesCS6A01G341000 chr1A 88.136 59 6 1 2952 3009 302583228 302583170 5.440000e-08 69.4
33 TraesCS6A01G341000 chr2D 86.111 360 36 8 2630 2977 177868111 177867754 2.860000e-100 375.0
34 TraesCS6A01G341000 chr2D 77.799 527 74 22 85 576 343773733 343773215 4.960000e-73 285.0
35 TraesCS6A01G341000 chr2D 91.489 47 4 0 577 623 8983386 8983432 7.030000e-07 65.8
36 TraesCS6A01G341000 chr6D 86.072 359 37 7 2630 2977 449179924 449179568 1.030000e-99 374.0
37 TraesCS6A01G341000 chr6D 77.029 579 78 26 40 576 124668905 124669470 6.410000e-72 281.0
38 TraesCS6A01G341000 chr6D 79.433 423 56 11 185 576 157997072 157997494 1.390000e-68 270.0
39 TraesCS6A01G341000 chr6D 76.108 519 102 12 44 544 35216424 35216938 5.030000e-63 252.0
40 TraesCS6A01G341000 chr6D 76.338 355 65 9 110 445 373050149 373049795 4.030000e-39 172.0
41 TraesCS6A01G341000 chr5A 76.171 726 159 11 1455 2171 632882243 632882963 1.330000e-98 370.0
42 TraesCS6A01G341000 chr5A 81.461 356 58 6 983 1337 632881955 632882303 4.960000e-73 285.0
43 TraesCS6A01G341000 chr4D 85.794 359 40 5 2630 2977 478256609 478256251 1.330000e-98 370.0
44 TraesCS6A01G341000 chr4D 78.118 425 72 16 40 446 487353867 487353446 1.810000e-62 250.0
45 TraesCS6A01G341000 chr4D 77.103 428 75 14 40 445 270612604 270613030 3.050000e-55 226.0
46 TraesCS6A01G341000 chr4D 76.010 421 75 18 40 443 414981779 414982190 8.600000e-46 195.0
47 TraesCS6A01G341000 chr4D 74.892 231 41 10 225 440 438786459 438786231 4.170000e-14 89.8
48 TraesCS6A01G341000 chr3D 85.754 358 39 9 2630 2977 400024138 400023783 4.790000e-98 368.0
49 TraesCS6A01G341000 chr3D 76.581 427 77 14 40 445 298459477 298459053 2.370000e-51 213.0
50 TraesCS6A01G341000 chr7A 79.664 536 80 18 65 576 558675500 558674970 2.880000e-95 359.0
51 TraesCS6A01G341000 chr7A 77.058 571 99 12 40 578 342763021 342763591 1.770000e-77 300.0
52 TraesCS6A01G341000 chr7A 76.182 571 88 24 40 576 413096959 413096403 1.080000e-64 257.0
53 TraesCS6A01G341000 chr5B 88.327 257 28 2 984 1239 635462857 635463112 1.060000e-79 307.0
54 TraesCS6A01G341000 chr5B 85.306 245 31 3 968 1211 635510505 635510745 6.510000e-62 248.0
55 TraesCS6A01G341000 chr5B 84.000 225 36 0 983 1207 635515200 635515424 1.830000e-52 217.0
56 TraesCS6A01G341000 chr5B 81.746 252 44 2 983 1233 635466870 635467120 3.070000e-50 209.0
57 TraesCS6A01G341000 chr2A 77.376 526 79 20 85 576 454813722 454813203 2.980000e-70 276.0
58 TraesCS6A01G341000 chr2A 93.182 44 3 0 583 626 8042602 8042559 7.030000e-07 65.8
59 TraesCS6A01G341000 chr1B 76.744 430 72 19 40 445 648030270 648030695 6.600000e-52 215.0
60 TraesCS6A01G341000 chr1B 75.853 381 76 7 37 401 658752653 658753033 2.410000e-41 180.0
61 TraesCS6A01G341000 chr4B 76.039 409 82 14 44 440 542750373 542749969 6.650000e-47 198.0
62 TraesCS6A01G341000 chr3A 76.425 386 69 13 80 445 686337092 686337475 4.000000e-44 189.0
63 TraesCS6A01G341000 chrUn 78.599 257 54 1 40 295 305218816 305218560 5.210000e-38 169.0
64 TraesCS6A01G341000 chrUn 78.599 257 54 1 40 295 305223135 305222879 5.210000e-38 169.0
65 TraesCS6A01G341000 chrUn 74.892 231 41 10 225 440 380809772 380809544 4.170000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G341000 chr6A 573859671 573862709 3038 True 1325.0 5613 100.0000 1 3039 5 chr6A.!!$R1 3038
1 TraesCS6A01G341000 chr6B 645814629 645817086 2457 True 993.0 1936 95.8560 40 2618 4 chr6B.!!$R3 2578
2 TraesCS6A01G341000 chr6B 199082468 199083034 566 True 250.0 250 75.6140 40 576 1 chr6B.!!$R1 536
3 TraesCS6A01G341000 chr2D 343773215 343773733 518 True 285.0 285 77.7990 85 576 1 chr2D.!!$R2 491
4 TraesCS6A01G341000 chr6D 124668905 124669470 565 False 281.0 281 77.0290 40 576 1 chr6D.!!$F2 536
5 TraesCS6A01G341000 chr6D 35216424 35216938 514 False 252.0 252 76.1080 44 544 1 chr6D.!!$F1 500
6 TraesCS6A01G341000 chr5A 632881955 632882963 1008 False 327.5 370 78.8160 983 2171 2 chr5A.!!$F1 1188
7 TraesCS6A01G341000 chr7A 558674970 558675500 530 True 359.0 359 79.6640 65 576 1 chr7A.!!$R2 511
8 TraesCS6A01G341000 chr7A 342763021 342763591 570 False 300.0 300 77.0580 40 578 1 chr7A.!!$F1 538
9 TraesCS6A01G341000 chr7A 413096403 413096959 556 True 257.0 257 76.1820 40 576 1 chr7A.!!$R1 536
10 TraesCS6A01G341000 chr5B 635462857 635467120 4263 False 258.0 307 85.0365 983 1239 2 chr5B.!!$F3 256
11 TraesCS6A01G341000 chr2A 454813203 454813722 519 True 276.0 276 77.3760 85 576 1 chr2A.!!$R2 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 318 0.107831 TTACTTTGGCAGCCGTGTCT 59.892 50.0 7.03 0.0 0.00 3.41 F
1360 1425 0.586802 GACCTTTCACACTTGGTCGC 59.413 55.0 0.00 0.0 39.39 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1640 0.035439 GTCCATCGGTGTGGGAATGT 60.035 55.0 0.00 0.00 39.8 2.71 R
2884 4276 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.0 6.12 2.01 43.2 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.677875 CCTTGGCCCTTGCTGGTC 60.678 66.667 0.00 0.00 37.74 4.02
20 21 2.677875 CTTGGCCCTTGCTGGTCC 60.678 66.667 0.00 0.00 37.74 4.46
21 22 4.299796 TTGGCCCTTGCTGGTCCC 62.300 66.667 0.00 0.00 37.74 4.46
23 24 4.748144 GGCCCTTGCTGGTCCCTG 62.748 72.222 0.00 0.00 37.74 4.45
25 26 3.655211 CCCTTGCTGGTCCCTGCT 61.655 66.667 15.07 0.00 40.75 4.24
26 27 2.360852 CCTTGCTGGTCCCTGCTG 60.361 66.667 15.07 8.62 40.75 4.41
27 28 2.433446 CTTGCTGGTCCCTGCTGT 59.567 61.111 15.07 0.00 40.75 4.40
28 29 1.673665 CTTGCTGGTCCCTGCTGTC 60.674 63.158 15.07 0.00 40.75 3.51
29 30 2.121992 CTTGCTGGTCCCTGCTGTCT 62.122 60.000 15.07 0.00 40.75 3.41
30 31 1.708993 TTGCTGGTCCCTGCTGTCTT 61.709 55.000 15.07 0.00 40.75 3.01
31 32 1.376553 GCTGGTCCCTGCTGTCTTC 60.377 63.158 7.84 0.00 37.80 2.87
32 33 1.079543 CTGGTCCCTGCTGTCTTCG 60.080 63.158 0.00 0.00 0.00 3.79
33 34 2.435059 GGTCCCTGCTGTCTTCGC 60.435 66.667 0.00 0.00 0.00 4.70
34 35 2.435059 GTCCCTGCTGTCTTCGCC 60.435 66.667 0.00 0.00 0.00 5.54
35 36 4.069232 TCCCTGCTGTCTTCGCCG 62.069 66.667 0.00 0.00 0.00 6.46
36 37 4.379243 CCCTGCTGTCTTCGCCGT 62.379 66.667 0.00 0.00 0.00 5.68
37 38 2.357517 CCTGCTGTCTTCGCCGTT 60.358 61.111 0.00 0.00 0.00 4.44
38 39 2.671177 CCTGCTGTCTTCGCCGTTG 61.671 63.158 0.00 0.00 0.00 4.10
186 192 1.346722 CCGTTGTTGGAGGTCCTACTT 59.653 52.381 1.83 0.00 41.37 2.24
193 199 4.021916 GTTGGAGGTCCTACTTGCTACTA 58.978 47.826 1.83 0.00 38.46 1.82
259 265 0.729116 CACAACATGACCATCGAGGC 59.271 55.000 0.00 0.00 43.14 4.70
303 318 0.107831 TTACTTTGGCAGCCGTGTCT 59.892 50.000 7.03 0.00 0.00 3.41
304 319 0.602638 TACTTTGGCAGCCGTGTCTG 60.603 55.000 7.03 0.00 37.15 3.51
377 407 1.067084 CAATGCCGCACACAACCAA 59.933 52.632 0.00 0.00 0.00 3.67
404 434 2.456119 CGACCTCATTGAGCACCGC 61.456 63.158 8.23 0.00 0.00 5.68
480 526 0.682852 ATGTCTTTCGGTTCCGGACA 59.317 50.000 18.37 18.37 40.43 4.02
619 668 7.075148 AGGGGAATAGGCAAAATCATGATTTA 58.925 34.615 29.16 16.46 39.88 1.40
701 757 4.310288 GCTTCTTCAGCCCCTGAC 57.690 61.111 0.00 0.00 43.65 3.51
805 861 5.780958 AAAGGGAGACTGTTTAGCCTTAT 57.219 39.130 0.00 0.00 0.00 1.73
808 864 8.562949 AAAGGGAGACTGTTTAGCCTTATATA 57.437 34.615 0.00 0.00 0.00 0.86
809 865 8.562949 AAGGGAGACTGTTTAGCCTTATATAA 57.437 34.615 0.00 0.00 0.00 0.98
848 904 0.953960 AGCTTGGCTAAACCGAACCG 60.954 55.000 0.00 0.00 43.94 4.44
869 925 0.671163 GTACCCACGAACCGATGCAA 60.671 55.000 0.00 0.00 0.00 4.08
889 945 3.207669 CCGACCGGGTCCGTCTAG 61.208 72.222 21.06 6.09 37.81 2.43
930 986 2.683475 CCACACCCATCCTTCCCC 59.317 66.667 0.00 0.00 0.00 4.81
941 997 1.001631 CCTTCCCCCACCCAAATCC 59.998 63.158 0.00 0.00 0.00 3.01
974 1030 1.535444 CCCCAACCTTCCCCAAACC 60.535 63.158 0.00 0.00 0.00 3.27
1326 1391 3.756069 ACGCTACGTCTTTGACTCATAC 58.244 45.455 0.00 0.00 33.69 2.39
1327 1392 2.776765 CGCTACGTCTTTGACTCATACG 59.223 50.000 0.00 7.27 39.37 3.06
1328 1393 3.484721 CGCTACGTCTTTGACTCATACGA 60.485 47.826 13.16 0.00 37.04 3.43
1329 1394 3.784994 GCTACGTCTTTGACTCATACGAC 59.215 47.826 13.16 5.08 37.04 4.34
1330 1395 3.213249 ACGTCTTTGACTCATACGACC 57.787 47.619 13.16 0.00 37.04 4.79
1331 1396 2.555325 ACGTCTTTGACTCATACGACCA 59.445 45.455 13.16 0.00 37.04 4.02
1332 1397 3.172050 CGTCTTTGACTCATACGACCAG 58.828 50.000 0.00 0.00 35.66 4.00
1333 1398 3.366070 CGTCTTTGACTCATACGACCAGT 60.366 47.826 0.00 0.00 35.66 4.00
1334 1399 4.142752 CGTCTTTGACTCATACGACCAGTA 60.143 45.833 0.00 0.00 40.03 2.74
1335 1400 5.094134 GTCTTTGACTCATACGACCAGTAC 58.906 45.833 0.00 0.00 38.29 2.73
1336 1401 5.008331 TCTTTGACTCATACGACCAGTACT 58.992 41.667 0.00 0.00 38.29 2.73
1337 1402 4.696899 TTGACTCATACGACCAGTACTG 57.303 45.455 16.34 16.34 38.29 2.74
1348 1413 2.100605 CCAGTACTGGCAGACCTTTC 57.899 55.000 28.48 4.57 44.73 2.62
1349 1414 1.347707 CCAGTACTGGCAGACCTTTCA 59.652 52.381 28.48 0.00 44.73 2.69
1350 1415 2.417719 CAGTACTGGCAGACCTTTCAC 58.582 52.381 23.66 6.83 36.63 3.18
1351 1416 2.047061 AGTACTGGCAGACCTTTCACA 58.953 47.619 23.66 0.00 36.63 3.58
1352 1417 2.143925 GTACTGGCAGACCTTTCACAC 58.856 52.381 23.66 0.95 36.63 3.82
1353 1418 0.839946 ACTGGCAGACCTTTCACACT 59.160 50.000 23.66 0.00 36.63 3.55
1354 1419 1.212935 ACTGGCAGACCTTTCACACTT 59.787 47.619 23.66 0.00 36.63 3.16
1355 1420 1.605710 CTGGCAGACCTTTCACACTTG 59.394 52.381 9.42 0.00 36.63 3.16
1356 1421 0.954452 GGCAGACCTTTCACACTTGG 59.046 55.000 0.00 0.00 0.00 3.61
1357 1422 1.680338 GCAGACCTTTCACACTTGGT 58.320 50.000 0.00 0.00 35.23 3.67
1358 1423 1.604278 GCAGACCTTTCACACTTGGTC 59.396 52.381 0.00 0.00 46.67 4.02
1360 1425 0.586802 GACCTTTCACACTTGGTCGC 59.413 55.000 0.00 0.00 39.39 5.19
1361 1426 0.818040 ACCTTTCACACTTGGTCGCC 60.818 55.000 0.00 0.00 0.00 5.54
1362 1427 1.569493 CTTTCACACTTGGTCGCCG 59.431 57.895 0.00 0.00 0.00 6.46
1363 1428 2.443957 CTTTCACACTTGGTCGCCGC 62.444 60.000 0.00 0.00 0.00 6.53
1364 1429 2.933878 TTTCACACTTGGTCGCCGCT 62.934 55.000 0.00 0.00 0.00 5.52
1365 1430 3.716006 CACACTTGGTCGCCGCTG 61.716 66.667 0.00 0.00 0.00 5.18
1383 1448 2.612115 CCCTGAAGGCCCTGGACT 60.612 66.667 0.00 0.00 32.88 3.85
1384 1449 2.673523 CCTGAAGGCCCTGGACTG 59.326 66.667 0.00 0.00 31.22 3.51
1385 1450 2.045536 CTGAAGGCCCTGGACTGC 60.046 66.667 0.00 0.00 31.22 4.40
1415 1480 3.756069 ACGCTACGTCTTTGACTCATAC 58.244 45.455 0.00 0.00 33.69 2.39
1416 1481 2.776765 CGCTACGTCTTTGACTCATACG 59.223 50.000 0.00 7.27 39.37 3.06
1417 1482 3.484721 CGCTACGTCTTTGACTCATACGA 60.485 47.826 13.16 0.00 37.04 3.43
1418 1483 3.784994 GCTACGTCTTTGACTCATACGAC 59.215 47.826 13.16 5.08 37.04 4.34
1419 1484 3.213249 ACGTCTTTGACTCATACGACC 57.787 47.619 13.16 0.00 37.04 4.79
1420 1485 2.555325 ACGTCTTTGACTCATACGACCA 59.445 45.455 13.16 0.00 37.04 4.02
1421 1486 3.172050 CGTCTTTGACTCATACGACCAG 58.828 50.000 0.00 0.00 35.66 4.00
1422 1487 3.366070 CGTCTTTGACTCATACGACCAGT 60.366 47.826 0.00 0.00 35.66 4.00
1423 1488 4.142752 CGTCTTTGACTCATACGACCAGTA 60.143 45.833 0.00 0.00 40.03 2.74
1424 1489 5.094134 GTCTTTGACTCATACGACCAGTAC 58.906 45.833 0.00 0.00 38.29 2.73
1425 1490 5.008331 TCTTTGACTCATACGACCAGTACT 58.992 41.667 0.00 0.00 38.29 2.73
1426 1491 4.696899 TTGACTCATACGACCAGTACTG 57.303 45.455 16.34 16.34 38.29 2.74
1437 1502 2.100605 CCAGTACTGGCAGACCTTTC 57.899 55.000 28.48 4.57 44.73 2.62
1438 1503 1.347707 CCAGTACTGGCAGACCTTTCA 59.652 52.381 28.48 0.00 44.73 2.69
1439 1504 2.417719 CAGTACTGGCAGACCTTTCAC 58.582 52.381 23.66 6.83 36.63 3.18
1440 1505 2.047061 AGTACTGGCAGACCTTTCACA 58.953 47.619 23.66 0.00 36.63 3.58
1441 1506 2.143925 GTACTGGCAGACCTTTCACAC 58.856 52.381 23.66 0.95 36.63 3.82
1442 1507 0.839946 ACTGGCAGACCTTTCACACT 59.160 50.000 23.66 0.00 36.63 3.55
1443 1508 1.212935 ACTGGCAGACCTTTCACACTT 59.787 47.619 23.66 0.00 36.63 3.16
1444 1509 1.605710 CTGGCAGACCTTTCACACTTG 59.394 52.381 9.42 0.00 36.63 3.16
1445 1510 0.954452 GGCAGACCTTTCACACTTGG 59.046 55.000 0.00 0.00 0.00 3.61
1446 1511 1.680338 GCAGACCTTTCACACTTGGT 58.320 50.000 0.00 0.00 35.23 3.67
1447 1512 1.604278 GCAGACCTTTCACACTTGGTC 59.396 52.381 0.00 0.00 46.67 4.02
1449 1514 0.586802 GACCTTTCACACTTGGTCGC 59.413 55.000 0.00 0.00 39.39 5.19
1450 1515 0.818040 ACCTTTCACACTTGGTCGCC 60.818 55.000 0.00 0.00 0.00 5.54
1451 1516 1.569493 CTTTCACACTTGGTCGCCG 59.431 57.895 0.00 0.00 0.00 6.46
1452 1517 2.443957 CTTTCACACTTGGTCGCCGC 62.444 60.000 0.00 0.00 0.00 6.53
1453 1518 2.933878 TTTCACACTTGGTCGCCGCT 62.934 55.000 0.00 0.00 0.00 5.52
1454 1519 3.716006 CACACTTGGTCGCCGCTG 61.716 66.667 0.00 0.00 0.00 5.18
1472 1537 2.612115 CCCTGAAGGCCCTGGACT 60.612 66.667 0.00 0.00 32.88 3.85
1473 1538 2.673523 CCTGAAGGCCCTGGACTG 59.326 66.667 0.00 0.00 31.22 3.51
1474 1539 2.045536 CTGAAGGCCCTGGACTGC 60.046 66.667 0.00 0.00 31.22 4.40
1666 1734 2.669133 CCACGATTGCCAGGGAGGA 61.669 63.158 0.00 0.00 41.22 3.71
1882 1953 4.278513 TGCCACCTTGGTTCCCGG 62.279 66.667 0.00 0.00 40.46 5.73
1883 1954 4.280019 GCCACCTTGGTTCCCGGT 62.280 66.667 0.00 0.00 40.46 5.28
1888 1959 0.466739 ACCTTGGTTCCCGGTGTTTC 60.467 55.000 0.00 0.00 0.00 2.78
1906 1977 0.753479 TCTCCATGCTCGAGAGACCC 60.753 60.000 18.75 0.00 31.80 4.46
1952 2023 2.962569 CAGAAGACGGCGGACTGA 59.037 61.111 13.24 0.00 0.00 3.41
2039 2111 2.465813 CCATGGGATGGGCAAAGTAAA 58.534 47.619 2.85 0.00 46.86 2.01
2092 2164 0.108207 GGCCCTCTCCATCACATCAG 59.892 60.000 0.00 0.00 0.00 2.90
2093 2165 1.126488 GCCCTCTCCATCACATCAGA 58.874 55.000 0.00 0.00 0.00 3.27
2214 2292 1.656587 TTGTATCTGGTCTGGGCAGT 58.343 50.000 0.00 0.00 0.00 4.40
2217 2295 2.766263 TGTATCTGGTCTGGGCAGTAAG 59.234 50.000 0.00 0.00 0.00 2.34
2218 2296 2.254152 ATCTGGTCTGGGCAGTAAGA 57.746 50.000 0.00 0.00 0.00 2.10
2278 2356 9.699410 TTATTCTTTATGATTCTTGGTCCATGT 57.301 29.630 4.76 0.00 0.00 3.21
2284 2362 4.979335 TGATTCTTGGTCCATGTACACAA 58.021 39.130 0.00 0.00 0.00 3.33
2318 2399 4.022155 TCATGTGTGATTTGTTGGTCCATG 60.022 41.667 0.00 0.00 0.00 3.66
2389 2470 5.950549 TGACTTAACAGTAGCTACTAAGGCT 59.049 40.000 28.72 15.61 43.02 4.58
2421 2502 4.572909 TCGATGATCCATCCATCATGAAC 58.427 43.478 0.00 0.00 42.52 3.18
2491 2572 5.520649 GGTCTTCGAGTAAGGAAATGATCAC 59.479 44.000 0.00 0.00 35.75 3.06
2504 2585 0.538584 TGATCACCAGTAGCAGCCAG 59.461 55.000 0.00 0.00 0.00 4.85
2521 2602 0.455633 CAGCCAGACGCAAAATGAGC 60.456 55.000 0.00 0.00 41.38 4.26
2527 2608 1.305213 ACGCAAAATGAGCCCCCAT 60.305 52.632 0.00 0.00 0.00 4.00
2568 3727 4.219725 CCAACCACACCCTTGTTAATTAGG 59.780 45.833 0.08 0.08 31.66 2.69
2589 3748 4.161565 AGGTGCAACGGAAACATCTATCTA 59.838 41.667 0.00 0.00 38.12 1.98
2628 3901 5.767816 AAATAGGATTCACGGTAATTGCC 57.232 39.130 1.83 1.83 0.00 4.52
2633 3906 3.428862 GGATTCACGGTAATTGCCTTTGG 60.429 47.826 11.07 0.00 0.00 3.28
2643 3916 4.645809 GCCTTTGGCTCCTAGGTG 57.354 61.111 9.08 7.68 46.69 4.00
2644 3917 1.750780 GCCTTTGGCTCCTAGGTGC 60.751 63.158 24.68 24.68 46.69 5.01
2645 3918 1.685224 CCTTTGGCTCCTAGGTGCA 59.315 57.895 31.19 17.76 36.47 4.57
2646 3919 0.257039 CCTTTGGCTCCTAGGTGCAT 59.743 55.000 31.19 0.00 36.47 3.96
2647 3920 1.490490 CCTTTGGCTCCTAGGTGCATA 59.510 52.381 31.19 19.50 36.47 3.14
2650 3923 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
2661 3934 3.851620 GCATATGCACCCATTGTCG 57.148 52.632 22.84 0.00 41.59 4.35
2664 4037 2.098934 GCATATGCACCCATTGTCGAAA 59.901 45.455 22.84 0.00 41.59 3.46
2667 4040 1.173043 TGCACCCATTGTCGAAATCC 58.827 50.000 0.00 0.00 0.00 3.01
2670 4043 2.029470 GCACCCATTGTCGAAATCCAAA 60.029 45.455 0.00 0.00 0.00 3.28
2673 4046 4.864247 CACCCATTGTCGAAATCCAAATTC 59.136 41.667 0.00 0.00 0.00 2.17
2674 4047 4.081697 ACCCATTGTCGAAATCCAAATTCC 60.082 41.667 0.00 0.00 0.00 3.01
2675 4048 4.104776 CCATTGTCGAAATCCAAATTCCG 58.895 43.478 0.00 0.00 0.00 4.30
2678 4051 3.932822 TGTCGAAATCCAAATTCCGAGA 58.067 40.909 0.00 0.00 0.00 4.04
2680 4053 4.391830 TGTCGAAATCCAAATTCCGAGAAG 59.608 41.667 0.00 0.00 0.00 2.85
2681 4054 4.392138 GTCGAAATCCAAATTCCGAGAAGT 59.608 41.667 0.00 0.00 0.00 3.01
2682 4055 5.001232 TCGAAATCCAAATTCCGAGAAGTT 58.999 37.500 0.00 0.00 0.00 2.66
2707 4080 4.983215 AAATTCGAAACAAAAATCCCGC 57.017 36.364 0.00 0.00 0.00 6.13
2708 4081 2.039327 TTCGAAACAAAAATCCCGCG 57.961 45.000 0.00 0.00 0.00 6.46
2710 4083 1.049251 CGAAACAAAAATCCCGCGTG 58.951 50.000 4.92 0.00 0.00 5.34
2711 4084 1.598430 CGAAACAAAAATCCCGCGTGT 60.598 47.619 4.92 0.00 0.00 4.49
2712 4085 2.349627 CGAAACAAAAATCCCGCGTGTA 60.350 45.455 4.92 0.00 0.00 2.90
2715 4088 5.570234 AAACAAAAATCCCGCGTGTATAT 57.430 34.783 4.92 0.00 0.00 0.86
2716 4089 4.806342 ACAAAAATCCCGCGTGTATATC 57.194 40.909 4.92 0.00 0.00 1.63
2718 4091 4.272504 ACAAAAATCCCGCGTGTATATCTG 59.727 41.667 4.92 0.00 0.00 2.90
2719 4092 2.743636 AATCCCGCGTGTATATCTGG 57.256 50.000 4.92 0.00 0.00 3.86
2721 4094 0.956633 TCCCGCGTGTATATCTGGAC 59.043 55.000 4.92 0.00 0.00 4.02
2723 4096 1.272490 CCCGCGTGTATATCTGGACAT 59.728 52.381 4.92 0.00 0.00 3.06
2725 4098 3.390135 CCGCGTGTATATCTGGACATTT 58.610 45.455 4.92 0.00 0.00 2.32
2728 4101 5.637810 CCGCGTGTATATCTGGACATTTTAT 59.362 40.000 4.92 0.00 0.00 1.40
2729 4102 6.401047 CCGCGTGTATATCTGGACATTTTATG 60.401 42.308 4.92 0.00 0.00 1.90
2748 4121 2.105323 GTGCGTTCACAAGGTTTCAG 57.895 50.000 0.00 0.00 42.66 3.02
2749 4122 1.400494 GTGCGTTCACAAGGTTTCAGT 59.600 47.619 0.00 0.00 42.66 3.41
2757 4130 4.728534 TCACAAGGTTTCAGTGAAAAACG 58.271 39.130 19.63 11.00 39.15 3.60
2759 4132 4.557301 CACAAGGTTTCAGTGAAAAACGAC 59.443 41.667 19.63 7.90 37.46 4.34
2760 4133 3.668596 AGGTTTCAGTGAAAAACGACG 57.331 42.857 19.63 0.00 37.46 5.12
2761 4134 3.004862 AGGTTTCAGTGAAAAACGACGT 58.995 40.909 19.63 6.92 37.46 4.34
2762 4135 3.437741 AGGTTTCAGTGAAAAACGACGTT 59.562 39.130 19.63 7.57 37.46 3.99
2763 4136 4.083164 AGGTTTCAGTGAAAAACGACGTTT 60.083 37.500 19.83 19.83 37.46 3.60
2802 4175 3.904136 AAGACAAAGAAATGCCTCGTG 57.096 42.857 0.00 0.00 0.00 4.35
2804 4177 3.476552 AGACAAAGAAATGCCTCGTGAA 58.523 40.909 0.00 0.00 0.00 3.18
2806 4179 4.083110 AGACAAAGAAATGCCTCGTGAATG 60.083 41.667 0.00 0.00 0.00 2.67
2807 4180 3.820467 ACAAAGAAATGCCTCGTGAATGA 59.180 39.130 0.00 0.00 0.00 2.57
2809 4182 4.691860 AAGAAATGCCTCGTGAATGAAG 57.308 40.909 0.00 0.00 0.00 3.02
2810 4183 2.421424 AGAAATGCCTCGTGAATGAAGC 59.579 45.455 0.00 0.00 0.00 3.86
2811 4184 1.825090 AATGCCTCGTGAATGAAGCA 58.175 45.000 0.00 0.00 39.46 3.91
2812 4185 2.048444 ATGCCTCGTGAATGAAGCAT 57.952 45.000 3.28 3.28 40.34 3.79
2813 4186 1.372582 TGCCTCGTGAATGAAGCATC 58.627 50.000 0.00 0.00 30.64 3.91
2814 4187 1.338960 TGCCTCGTGAATGAAGCATCA 60.339 47.619 0.00 0.00 40.57 3.07
2817 4209 3.264947 CCTCGTGAATGAAGCATCAGAA 58.735 45.455 0.00 0.00 39.39 3.02
2818 4210 3.686241 CCTCGTGAATGAAGCATCAGAAA 59.314 43.478 0.00 0.00 39.39 2.52
2823 4215 5.510674 CGTGAATGAAGCATCAGAAATTGTC 59.489 40.000 0.00 0.00 39.39 3.18
2863 4255 3.468304 AAAACGTCGTTTTTCACCGAA 57.532 38.095 26.23 0.00 42.11 4.30
2864 4256 3.468304 AAACGTCGTTTTTCACCGAAA 57.532 38.095 17.41 0.00 31.10 3.46
2868 4260 2.223089 CGTCGTTTTTCACCGAAACCTT 60.223 45.455 0.00 0.00 34.35 3.50
2869 4261 3.103007 GTCGTTTTTCACCGAAACCTTG 58.897 45.455 0.00 0.00 34.35 3.61
2875 4267 1.292061 TCACCGAAACCTTGTGAACG 58.708 50.000 0.00 0.00 36.16 3.95
2899 4295 6.599437 GCACATAAAATGTCCGGATATACAC 58.401 40.000 14.71 0.00 42.70 2.90
2901 4297 5.407387 ACATAAAATGTCCGGATATACACGC 59.593 40.000 14.71 0.00 39.92 5.34
2903 4299 0.242825 ATGTCCGGATATACACGCGG 59.757 55.000 12.63 1.27 0.00 6.46
2904 4300 1.080974 GTCCGGATATACACGCGGG 60.081 63.158 6.92 6.92 0.00 6.13
2911 4307 3.363575 CGGATATACACGCGGGATTTTTG 60.364 47.826 19.19 1.15 0.00 2.44
2913 4309 4.035909 GGATATACACGCGGGATTTTTGTT 59.964 41.667 19.19 0.00 0.00 2.83
2914 4310 3.926821 ATACACGCGGGATTTTTGTTT 57.073 38.095 19.19 0.00 0.00 2.83
2915 4311 2.128367 ACACGCGGGATTTTTGTTTC 57.872 45.000 19.19 0.00 0.00 2.78
2916 4312 1.049251 CACGCGGGATTTTTGTTTCG 58.951 50.000 12.47 0.00 0.00 3.46
2918 4314 1.334243 ACGCGGGATTTTTGTTTCGAA 59.666 42.857 12.47 0.00 0.00 3.71
2924 4320 5.843878 GCGGGATTTTTGTTTCGAATTTTTC 59.156 36.000 0.00 0.00 0.00 2.29
2929 4325 9.767684 GGATTTTTGTTTCGAATTTTTCAACTT 57.232 25.926 0.00 0.00 0.00 2.66
2934 4330 8.850454 TTGTTTCGAATTTTTCAACTTCTAGG 57.150 30.769 0.00 0.00 0.00 3.02
2935 4331 8.215926 TGTTTCGAATTTTTCAACTTCTAGGA 57.784 30.769 0.00 0.00 0.00 2.94
2940 4336 9.677567 TCGAATTTTTCAACTTCTAGGAATTTG 57.322 29.630 4.66 4.66 0.00 2.32
2941 4337 8.915654 CGAATTTTTCAACTTCTAGGAATTTGG 58.084 33.333 9.36 0.00 0.00 3.28
2942 4338 9.981114 GAATTTTTCAACTTCTAGGAATTTGGA 57.019 29.630 9.36 0.57 0.00 3.53
2946 4342 9.981114 TTTTCAACTTCTAGGAATTTGGATTTC 57.019 29.630 9.36 0.00 0.00 2.17
2947 4343 7.377766 TCAACTTCTAGGAATTTGGATTTCG 57.622 36.000 9.36 0.00 0.00 3.46
2948 4344 7.165485 TCAACTTCTAGGAATTTGGATTTCGA 58.835 34.615 9.36 0.00 0.00 3.71
2949 4345 6.986904 ACTTCTAGGAATTTGGATTTCGAC 57.013 37.500 0.00 0.00 0.00 4.20
2950 4346 6.472887 ACTTCTAGGAATTTGGATTTCGACA 58.527 36.000 0.00 0.00 0.00 4.35
2951 4347 6.940298 ACTTCTAGGAATTTGGATTTCGACAA 59.060 34.615 0.00 0.00 0.00 3.18
2953 4349 7.320443 TCTAGGAATTTGGATTTCGACAATG 57.680 36.000 0.00 0.00 0.00 2.82
2954 4350 5.329035 AGGAATTTGGATTTCGACAATGG 57.671 39.130 0.00 0.00 0.00 3.16
2955 4351 4.160252 AGGAATTTGGATTTCGACAATGGG 59.840 41.667 0.00 0.00 0.00 4.00
2956 4352 4.081697 GGAATTTGGATTTCGACAATGGGT 60.082 41.667 0.00 0.00 0.00 4.51
2957 4353 3.932545 TTTGGATTTCGACAATGGGTG 57.067 42.857 0.00 0.00 0.00 4.61
2958 4354 1.173043 TGGATTTCGACAATGGGTGC 58.827 50.000 0.00 0.00 0.00 5.01
2959 4355 1.173043 GGATTTCGACAATGGGTGCA 58.827 50.000 0.00 0.00 0.00 4.57
2960 4356 1.750778 GGATTTCGACAATGGGTGCAT 59.249 47.619 0.00 0.00 0.00 3.96
2962 4358 3.569701 GGATTTCGACAATGGGTGCATAT 59.430 43.478 0.00 0.00 0.00 1.78
2964 4360 1.308047 TCGACAATGGGTGCATATGC 58.692 50.000 21.09 21.09 42.50 3.14
2975 4371 3.239861 GCATATGCACCTAGGAGCC 57.760 57.895 25.94 8.49 41.59 4.70
2976 4372 0.397941 GCATATGCACCTAGGAGCCA 59.602 55.000 25.94 15.42 41.59 4.75
2977 4373 1.202806 GCATATGCACCTAGGAGCCAA 60.203 52.381 25.94 15.39 41.59 4.52
2979 4375 3.554934 CATATGCACCTAGGAGCCAAAA 58.445 45.455 25.94 9.83 0.00 2.44
2980 4376 1.839424 ATGCACCTAGGAGCCAAAAC 58.161 50.000 25.94 0.85 0.00 2.43
2981 4377 0.605319 TGCACCTAGGAGCCAAAACG 60.605 55.000 25.94 0.22 0.00 3.60
2982 4378 1.923227 GCACCTAGGAGCCAAAACGC 61.923 60.000 19.57 2.23 0.00 4.84
2983 4379 1.002502 ACCTAGGAGCCAAAACGCC 60.003 57.895 17.98 0.00 0.00 5.68
2984 4380 1.002624 CCTAGGAGCCAAAACGCCA 60.003 57.895 1.05 0.00 30.84 5.69
2986 4382 0.321653 CTAGGAGCCAAAACGCCACT 60.322 55.000 0.00 0.00 30.84 4.00
2988 4384 1.600916 GGAGCCAAAACGCCACTCT 60.601 57.895 0.00 0.00 0.00 3.24
2990 4386 0.884704 GAGCCAAAACGCCACTCTCA 60.885 55.000 0.00 0.00 0.00 3.27
2993 4389 1.401539 GCCAAAACGCCACTCTCATTC 60.402 52.381 0.00 0.00 0.00 2.67
2994 4390 1.879380 CCAAAACGCCACTCTCATTCA 59.121 47.619 0.00 0.00 0.00 2.57
2995 4391 2.489329 CCAAAACGCCACTCTCATTCAT 59.511 45.455 0.00 0.00 0.00 2.57
2996 4392 3.057315 CCAAAACGCCACTCTCATTCATT 60.057 43.478 0.00 0.00 0.00 2.57
2997 4393 4.161333 CAAAACGCCACTCTCATTCATTC 58.839 43.478 0.00 0.00 0.00 2.67
2998 4394 2.768253 ACGCCACTCTCATTCATTCA 57.232 45.000 0.00 0.00 0.00 2.57
3000 4396 4.406648 ACGCCACTCTCATTCATTCATA 57.593 40.909 0.00 0.00 0.00 2.15
3001 4397 4.965814 ACGCCACTCTCATTCATTCATAT 58.034 39.130 0.00 0.00 0.00 1.78
3002 4398 6.101650 ACGCCACTCTCATTCATTCATATA 57.898 37.500 0.00 0.00 0.00 0.86
3003 4399 6.705302 ACGCCACTCTCATTCATTCATATAT 58.295 36.000 0.00 0.00 0.00 0.86
3004 4400 7.164122 ACGCCACTCTCATTCATTCATATATT 58.836 34.615 0.00 0.00 0.00 1.28
3005 4401 7.332926 ACGCCACTCTCATTCATTCATATATTC 59.667 37.037 0.00 0.00 0.00 1.75
3006 4402 7.332678 CGCCACTCTCATTCATTCATATATTCA 59.667 37.037 0.00 0.00 0.00 2.57
3007 4403 9.175312 GCCACTCTCATTCATTCATATATTCAT 57.825 33.333 0.00 0.00 0.00 2.57
3026 4422 7.849804 ATTCATTATGCTAACAGAAGTTCGT 57.150 32.000 0.00 0.00 39.15 3.85
3027 4423 7.667043 TTCATTATGCTAACAGAAGTTCGTT 57.333 32.000 14.46 14.46 39.15 3.85
3028 4424 7.667043 TCATTATGCTAACAGAAGTTCGTTT 57.333 32.000 15.01 7.54 39.15 3.60
3029 4425 7.518161 TCATTATGCTAACAGAAGTTCGTTTG 58.482 34.615 15.01 14.08 39.15 2.93
3030 4426 4.749245 ATGCTAACAGAAGTTCGTTTGG 57.251 40.909 15.01 7.98 39.15 3.28
3031 4427 3.537580 TGCTAACAGAAGTTCGTTTGGT 58.462 40.909 15.01 3.09 39.15 3.67
3033 4429 3.808174 GCTAACAGAAGTTCGTTTGGTCT 59.192 43.478 15.01 0.00 39.15 3.85
3034 4430 4.084485 GCTAACAGAAGTTCGTTTGGTCTC 60.084 45.833 15.01 2.26 39.15 3.36
3038 4434 3.741344 CAGAAGTTCGTTTGGTCTCGATT 59.259 43.478 0.00 0.00 36.01 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.655211 AGCAGGGACCAGCAAGGG 61.655 66.667 8.48 0.00 43.89 3.95
9 10 2.360852 CAGCAGGGACCAGCAAGG 60.361 66.667 8.48 0.00 45.67 3.61
10 11 1.673665 GACAGCAGGGACCAGCAAG 60.674 63.158 8.48 3.00 32.05 4.01
11 12 1.708993 AAGACAGCAGGGACCAGCAA 61.709 55.000 8.48 0.00 32.05 3.91
12 13 2.116983 GAAGACAGCAGGGACCAGCA 62.117 60.000 8.48 0.00 32.05 4.41
13 14 1.376553 GAAGACAGCAGGGACCAGC 60.377 63.158 0.00 0.00 0.00 4.85
14 15 1.079543 CGAAGACAGCAGGGACCAG 60.080 63.158 0.00 0.00 0.00 4.00
15 16 3.059982 CGAAGACAGCAGGGACCA 58.940 61.111 0.00 0.00 0.00 4.02
16 17 2.435059 GCGAAGACAGCAGGGACC 60.435 66.667 0.00 0.00 34.19 4.46
17 18 2.435059 GGCGAAGACAGCAGGGAC 60.435 66.667 0.00 0.00 31.66 4.46
18 19 4.069232 CGGCGAAGACAGCAGGGA 62.069 66.667 0.00 0.00 27.25 4.20
19 20 3.883744 AACGGCGAAGACAGCAGGG 62.884 63.158 16.62 0.00 27.25 4.45
20 21 2.357517 AACGGCGAAGACAGCAGG 60.358 61.111 16.62 0.00 27.25 4.85
21 22 1.498865 AACAACGGCGAAGACAGCAG 61.499 55.000 16.62 0.00 27.25 4.24
22 23 1.495584 GAACAACGGCGAAGACAGCA 61.496 55.000 16.62 0.00 27.25 4.41
23 24 1.204312 GAACAACGGCGAAGACAGC 59.796 57.895 16.62 0.00 27.25 4.40
24 25 1.487231 CGAACAACGGCGAAGACAG 59.513 57.895 16.62 0.00 38.46 3.51
25 26 3.620286 CGAACAACGGCGAAGACA 58.380 55.556 16.62 0.00 38.46 3.41
35 36 1.857837 CAAATGTTGCCCACGAACAAC 59.142 47.619 0.00 0.00 45.06 3.32
36 37 1.478510 ACAAATGTTGCCCACGAACAA 59.521 42.857 0.00 0.00 36.90 2.83
37 38 1.107114 ACAAATGTTGCCCACGAACA 58.893 45.000 0.00 0.00 37.70 3.18
38 39 1.066303 TCACAAATGTTGCCCACGAAC 59.934 47.619 0.00 0.00 0.00 3.95
219 225 5.105957 TGTGTATAATTCCACATGCAACCAC 60.106 40.000 0.00 0.00 36.70 4.16
259 265 6.223351 ACTCTAACTTTAAATCCCTCTCGG 57.777 41.667 0.00 0.00 0.00 4.63
275 281 4.612939 CGGCTGCCAAAGTAAAACTCTAAC 60.613 45.833 20.29 0.00 0.00 2.34
303 318 0.326904 ATCTCATCTGGGTCCTGGCA 60.327 55.000 0.00 0.00 0.00 4.92
304 319 0.396060 GATCTCATCTGGGTCCTGGC 59.604 60.000 0.00 0.00 0.00 4.85
305 320 1.415659 GTGATCTCATCTGGGTCCTGG 59.584 57.143 0.00 0.00 0.00 4.45
377 407 2.341101 AATGAGGTCGTCGCGGAGT 61.341 57.895 6.13 0.00 0.00 3.85
404 434 3.643320 TCTATCTCCCATACAGTTGCCAG 59.357 47.826 0.00 0.00 0.00 4.85
470 516 5.128992 ACAATAACAAATTGTCCGGAACC 57.871 39.130 5.23 0.00 37.69 3.62
581 630 5.656859 GCCTATTCCCCTAAAACTGATTTGT 59.343 40.000 0.00 0.00 32.27 2.83
653 702 3.200605 ACCATGACTATGTGCCTTGATGA 59.799 43.478 0.00 0.00 32.21 2.92
848 904 1.356527 GCATCGGTTCGTGGGTACAC 61.357 60.000 0.00 0.00 44.23 2.90
886 942 2.701163 GAATCGAGTGCGGCCCCTAG 62.701 65.000 0.00 0.00 38.28 3.02
930 986 1.452108 GAGGCGAGGATTTGGGTGG 60.452 63.158 0.00 0.00 0.00 4.61
1014 1079 1.090052 GGCGGAGGAAGAAACCATCG 61.090 60.000 0.00 0.00 0.00 3.84
1314 1379 5.096169 CAGTACTGGTCGTATGAGTCAAAG 58.904 45.833 15.49 0.00 0.00 2.77
1315 1380 4.082408 CCAGTACTGGTCGTATGAGTCAAA 60.082 45.833 30.57 0.00 45.53 2.69
1316 1381 3.442625 CCAGTACTGGTCGTATGAGTCAA 59.557 47.826 30.57 0.00 45.53 3.18
1317 1382 3.014623 CCAGTACTGGTCGTATGAGTCA 58.985 50.000 30.57 0.00 45.53 3.41
1318 1383 3.694535 CCAGTACTGGTCGTATGAGTC 57.305 52.381 30.57 0.00 45.53 3.36
1330 1395 2.224281 TGTGAAAGGTCTGCCAGTACTG 60.224 50.000 16.34 16.34 37.19 2.74
1331 1396 2.047061 TGTGAAAGGTCTGCCAGTACT 58.953 47.619 0.00 0.00 37.19 2.73
1332 1397 2.143925 GTGTGAAAGGTCTGCCAGTAC 58.856 52.381 0.00 0.00 37.19 2.73
1333 1398 2.047061 AGTGTGAAAGGTCTGCCAGTA 58.953 47.619 0.00 0.00 37.19 2.74
1334 1399 0.839946 AGTGTGAAAGGTCTGCCAGT 59.160 50.000 0.00 0.00 37.19 4.00
1335 1400 1.605710 CAAGTGTGAAAGGTCTGCCAG 59.394 52.381 0.00 0.00 37.19 4.85
1336 1401 1.679139 CAAGTGTGAAAGGTCTGCCA 58.321 50.000 0.00 0.00 37.19 4.92
1337 1402 0.954452 CCAAGTGTGAAAGGTCTGCC 59.046 55.000 0.00 0.00 0.00 4.85
1338 1403 1.604278 GACCAAGTGTGAAAGGTCTGC 59.396 52.381 0.00 0.00 45.46 4.26
1339 1404 1.867233 CGACCAAGTGTGAAAGGTCTG 59.133 52.381 8.60 0.00 46.45 3.51
1340 1405 1.810412 GCGACCAAGTGTGAAAGGTCT 60.810 52.381 8.60 0.00 46.45 3.85
1341 1406 0.586802 GCGACCAAGTGTGAAAGGTC 59.413 55.000 0.00 0.00 45.46 3.85
1342 1407 0.818040 GGCGACCAAGTGTGAAAGGT 60.818 55.000 0.00 0.00 37.00 3.50
1343 1408 1.841663 CGGCGACCAAGTGTGAAAGG 61.842 60.000 0.00 0.00 0.00 3.11
1344 1409 1.569493 CGGCGACCAAGTGTGAAAG 59.431 57.895 0.00 0.00 0.00 2.62
1345 1410 2.539338 GCGGCGACCAAGTGTGAAA 61.539 57.895 12.98 0.00 0.00 2.69
1346 1411 2.970324 GCGGCGACCAAGTGTGAA 60.970 61.111 12.98 0.00 0.00 3.18
1347 1412 3.923864 AGCGGCGACCAAGTGTGA 61.924 61.111 12.98 0.00 0.00 3.58
1348 1413 3.716006 CAGCGGCGACCAAGTGTG 61.716 66.667 12.98 0.00 0.00 3.82
1366 1431 2.612115 AGTCCAGGGCCTTCAGGG 60.612 66.667 1.32 1.22 35.18 4.45
1367 1432 2.673523 CAGTCCAGGGCCTTCAGG 59.326 66.667 1.32 1.69 38.53 3.86
1368 1433 2.045536 GCAGTCCAGGGCCTTCAG 60.046 66.667 1.32 0.00 0.00 3.02
1369 1434 3.650950 GGCAGTCCAGGGCCTTCA 61.651 66.667 1.32 0.00 46.74 3.02
1394 1459 3.727079 CGTATGAGTCAAAGACGTAGCGT 60.727 47.826 14.22 0.00 45.10 5.07
1395 1460 2.776765 CGTATGAGTCAAAGACGTAGCG 59.223 50.000 14.22 0.00 37.67 4.26
1396 1461 3.784994 GTCGTATGAGTCAAAGACGTAGC 59.215 47.826 19.08 10.93 37.67 3.58
1397 1462 4.142752 TGGTCGTATGAGTCAAAGACGTAG 60.143 45.833 19.08 0.29 37.67 3.51
1398 1463 3.752747 TGGTCGTATGAGTCAAAGACGTA 59.247 43.478 19.08 9.77 37.67 3.57
1399 1464 2.555325 TGGTCGTATGAGTCAAAGACGT 59.445 45.455 19.08 0.00 37.67 4.34
1400 1465 3.172050 CTGGTCGTATGAGTCAAAGACG 58.828 50.000 15.63 15.63 37.67 4.18
1401 1466 4.175787 ACTGGTCGTATGAGTCAAAGAC 57.824 45.455 14.06 14.06 0.00 3.01
1402 1467 5.008331 AGTACTGGTCGTATGAGTCAAAGA 58.992 41.667 0.00 0.00 0.00 2.52
1403 1468 5.096169 CAGTACTGGTCGTATGAGTCAAAG 58.904 45.833 15.49 0.00 0.00 2.77
1404 1469 4.082408 CCAGTACTGGTCGTATGAGTCAAA 60.082 45.833 30.57 0.00 45.53 2.69
1405 1470 3.442625 CCAGTACTGGTCGTATGAGTCAA 59.557 47.826 30.57 0.00 45.53 3.18
1406 1471 3.014623 CCAGTACTGGTCGTATGAGTCA 58.985 50.000 30.57 0.00 45.53 3.41
1407 1472 3.694535 CCAGTACTGGTCGTATGAGTC 57.305 52.381 30.57 0.00 45.53 3.36
1419 1484 2.224281 TGTGAAAGGTCTGCCAGTACTG 60.224 50.000 16.34 16.34 37.19 2.74
1420 1485 2.047061 TGTGAAAGGTCTGCCAGTACT 58.953 47.619 0.00 0.00 37.19 2.73
1421 1486 2.143925 GTGTGAAAGGTCTGCCAGTAC 58.856 52.381 0.00 0.00 37.19 2.73
1422 1487 2.047061 AGTGTGAAAGGTCTGCCAGTA 58.953 47.619 0.00 0.00 37.19 2.74
1423 1488 0.839946 AGTGTGAAAGGTCTGCCAGT 59.160 50.000 0.00 0.00 37.19 4.00
1424 1489 1.605710 CAAGTGTGAAAGGTCTGCCAG 59.394 52.381 0.00 0.00 37.19 4.85
1425 1490 1.679139 CAAGTGTGAAAGGTCTGCCA 58.321 50.000 0.00 0.00 37.19 4.92
1426 1491 0.954452 CCAAGTGTGAAAGGTCTGCC 59.046 55.000 0.00 0.00 0.00 4.85
1427 1492 1.604278 GACCAAGTGTGAAAGGTCTGC 59.396 52.381 0.00 0.00 45.46 4.26
1428 1493 1.867233 CGACCAAGTGTGAAAGGTCTG 59.133 52.381 8.60 0.00 46.45 3.51
1429 1494 1.810412 GCGACCAAGTGTGAAAGGTCT 60.810 52.381 8.60 0.00 46.45 3.85
1430 1495 0.586802 GCGACCAAGTGTGAAAGGTC 59.413 55.000 0.00 0.00 45.46 3.85
1431 1496 0.818040 GGCGACCAAGTGTGAAAGGT 60.818 55.000 0.00 0.00 37.00 3.50
1432 1497 1.841663 CGGCGACCAAGTGTGAAAGG 61.842 60.000 0.00 0.00 0.00 3.11
1433 1498 1.569493 CGGCGACCAAGTGTGAAAG 59.431 57.895 0.00 0.00 0.00 2.62
1434 1499 2.539338 GCGGCGACCAAGTGTGAAA 61.539 57.895 12.98 0.00 0.00 2.69
1435 1500 2.970324 GCGGCGACCAAGTGTGAA 60.970 61.111 12.98 0.00 0.00 3.18
1436 1501 3.923864 AGCGGCGACCAAGTGTGA 61.924 61.111 12.98 0.00 0.00 3.58
1437 1502 3.716006 CAGCGGCGACCAAGTGTG 61.716 66.667 12.98 0.00 0.00 3.82
1455 1520 2.612115 AGTCCAGGGCCTTCAGGG 60.612 66.667 1.32 1.22 35.18 4.45
1456 1521 2.673523 CAGTCCAGGGCCTTCAGG 59.326 66.667 1.32 1.69 38.53 3.86
1457 1522 2.045536 GCAGTCCAGGGCCTTCAG 60.046 66.667 1.32 0.00 0.00 3.02
1458 1523 3.650950 GGCAGTCCAGGGCCTTCA 61.651 66.667 1.32 0.00 46.74 3.02
1483 1548 3.727079 CGTATGAGTCAAAGACGTAGCGT 60.727 47.826 14.22 0.00 45.10 5.07
1484 1549 2.776765 CGTATGAGTCAAAGACGTAGCG 59.223 50.000 14.22 0.00 37.67 4.26
1485 1550 3.784994 GTCGTATGAGTCAAAGACGTAGC 59.215 47.826 19.08 10.93 37.67 3.58
1486 1551 4.142752 TGGTCGTATGAGTCAAAGACGTAG 60.143 45.833 19.08 0.29 37.67 3.51
1487 1552 3.752747 TGGTCGTATGAGTCAAAGACGTA 59.247 43.478 19.08 9.77 37.67 3.57
1488 1553 2.555325 TGGTCGTATGAGTCAAAGACGT 59.445 45.455 19.08 0.00 37.67 4.34
1489 1554 3.172050 CTGGTCGTATGAGTCAAAGACG 58.828 50.000 15.63 15.63 37.67 4.18
1490 1555 4.175787 ACTGGTCGTATGAGTCAAAGAC 57.824 45.455 14.06 14.06 0.00 3.01
1491 1556 5.008331 AGTACTGGTCGTATGAGTCAAAGA 58.992 41.667 0.00 0.00 0.00 2.52
1492 1557 5.096169 CAGTACTGGTCGTATGAGTCAAAG 58.904 45.833 15.49 0.00 0.00 2.77
1569 1637 1.408683 CCATCGGTGTGGGAATGTGAT 60.409 52.381 0.00 0.00 35.55 3.06
1572 1640 0.035439 GTCCATCGGTGTGGGAATGT 60.035 55.000 0.00 0.00 39.80 2.71
1888 1959 1.739049 GGGTCTCTCGAGCATGGAG 59.261 63.158 7.81 0.00 42.88 3.86
1906 1977 0.886490 GATACCCCTTGCCATCTGCG 60.886 60.000 0.00 0.00 45.60 5.18
1952 2023 4.643795 CACCATGGTGGCGAATCT 57.356 55.556 33.56 0.00 42.67 2.40
1987 2058 0.950836 CGGTTTGCATTGACCACAGA 59.049 50.000 12.99 0.00 35.63 3.41
2039 2111 1.933853 GCCGCGTAAGATCAATTGTCT 59.066 47.619 4.92 5.14 43.02 3.41
2092 2164 5.649782 ACACCACAAATTCCATCTTCATC 57.350 39.130 0.00 0.00 0.00 2.92
2093 2165 5.786311 CAACACCACAAATTCCATCTTCAT 58.214 37.500 0.00 0.00 0.00 2.57
2154 2226 4.223953 TGAGATCAATCCTGTAGGTACCC 58.776 47.826 8.74 0.00 36.34 3.69
2166 2238 3.525537 TCGCCTTGACTTGAGATCAATC 58.474 45.455 0.00 0.00 35.57 2.67
2207 2285 2.562296 AGGGAAAGATCTTACTGCCCA 58.438 47.619 25.33 0.00 37.60 5.36
2208 2286 3.181453 GGTAGGGAAAGATCTTACTGCCC 60.181 52.174 21.12 20.59 36.32 5.36
2214 2292 6.928202 AGATCTCTGGTAGGGAAAGATCTTA 58.072 40.000 8.75 0.00 46.52 2.10
2217 2295 6.551601 TGTAAGATCTCTGGTAGGGAAAGATC 59.448 42.308 0.00 0.00 41.62 2.75
2218 2296 6.444704 TGTAAGATCTCTGGTAGGGAAAGAT 58.555 40.000 0.00 0.00 0.00 2.40
2270 2348 2.858745 ACAAGGTTGTGTACATGGACC 58.141 47.619 5.38 14.12 40.49 4.46
2278 2356 5.053811 CACATGACTGTACAAGGTTGTGTA 58.946 41.667 15.34 0.00 42.31 2.90
2284 2362 4.623932 ATCACACATGACTGTACAAGGT 57.376 40.909 0.00 0.00 37.79 3.50
2294 2372 3.317711 TGGACCAACAAATCACACATGAC 59.682 43.478 0.00 0.00 37.79 3.06
2360 2441 6.835819 AGTAGCTACTGTTAAGTCACATGA 57.164 37.500 25.52 0.00 37.88 3.07
2365 2446 5.950549 AGCCTTAGTAGCTACTGTTAAGTCA 59.049 40.000 32.21 10.37 39.29 3.41
2366 2447 6.267070 CAGCCTTAGTAGCTACTGTTAAGTC 58.733 44.000 32.21 19.18 38.95 3.01
2389 2470 5.434978 GATGGATCATCGATGGACAGCCA 62.435 52.174 24.61 22.43 38.69 4.75
2421 2502 2.662791 GCATGTGTACAACTTGACTGCG 60.663 50.000 0.00 0.00 36.30 5.18
2491 2572 2.124819 CTGGCTGGCTGCTACTGG 60.125 66.667 16.14 0.00 42.39 4.00
2504 2585 1.153958 GGCTCATTTTGCGTCTGGC 60.154 57.895 0.00 0.00 43.96 4.85
2521 2602 1.121407 TCATCCGCTGAGTATGGGGG 61.121 60.000 0.00 0.00 37.98 5.40
2568 3727 5.109903 ACTAGATAGATGTTTCCGTTGCAC 58.890 41.667 0.00 0.00 0.00 4.57
2572 3731 7.837863 TCTGAAACTAGATAGATGTTTCCGTT 58.162 34.615 13.05 0.00 45.02 4.44
2628 3901 3.144506 CATATGCACCTAGGAGCCAAAG 58.855 50.000 25.94 11.57 0.00 2.77
2643 3916 1.308047 TCGACAATGGGTGCATATGC 58.692 50.000 21.09 21.09 42.50 3.14
2644 3917 4.539870 GATTTCGACAATGGGTGCATATG 58.460 43.478 0.00 0.00 0.00 1.78
2645 3918 3.569701 GGATTTCGACAATGGGTGCATAT 59.430 43.478 0.00 0.00 0.00 1.78
2646 3919 2.948979 GGATTTCGACAATGGGTGCATA 59.051 45.455 0.00 0.00 0.00 3.14
2647 3920 1.750778 GGATTTCGACAATGGGTGCAT 59.249 47.619 0.00 0.00 0.00 3.96
2650 3923 3.932545 TTTGGATTTCGACAATGGGTG 57.067 42.857 0.00 0.00 0.00 4.61
2651 3924 4.081697 GGAATTTGGATTTCGACAATGGGT 60.082 41.667 0.00 0.00 0.00 4.51
2652 3925 4.432712 GGAATTTGGATTTCGACAATGGG 58.567 43.478 0.00 0.00 0.00 4.00
2653 3926 4.104776 CGGAATTTGGATTTCGACAATGG 58.895 43.478 0.00 0.00 45.23 3.16
2654 3927 4.980590 TCGGAATTTGGATTTCGACAATG 58.019 39.130 0.00 0.00 45.79 2.82
2655 3928 4.941263 TCTCGGAATTTGGATTTCGACAAT 59.059 37.500 0.00 0.00 45.79 2.71
2657 3930 3.932822 TCTCGGAATTTGGATTTCGACA 58.067 40.909 0.00 0.00 45.79 4.35
2660 3933 4.946784 ACTTCTCGGAATTTGGATTTCG 57.053 40.909 0.00 0.00 44.05 3.46
2661 3934 9.471084 TTTTTAACTTCTCGGAATTTGGATTTC 57.529 29.630 0.00 0.00 0.00 2.17
2688 4061 2.030628 ACGCGGGATTTTTGTTTCGAAT 60.031 40.909 12.47 0.00 0.00 3.34
2690 4063 0.945813 ACGCGGGATTTTTGTTTCGA 59.054 45.000 12.47 0.00 0.00 3.71
2691 4064 1.049251 CACGCGGGATTTTTGTTTCG 58.951 50.000 12.47 0.00 0.00 3.46
2696 4069 4.319477 CCAGATATACACGCGGGATTTTTG 60.319 45.833 19.19 1.15 0.00 2.44
2697 4070 3.813166 CCAGATATACACGCGGGATTTTT 59.187 43.478 19.19 0.00 0.00 1.94
2701 4074 1.544691 GTCCAGATATACACGCGGGAT 59.455 52.381 19.19 6.43 0.00 3.85
2702 4075 0.956633 GTCCAGATATACACGCGGGA 59.043 55.000 19.19 2.35 0.00 5.14
2704 4077 2.724977 ATGTCCAGATATACACGCGG 57.275 50.000 12.47 1.27 0.00 6.46
2706 4079 7.290842 CACATAAAATGTCCAGATATACACGC 58.709 38.462 0.00 0.00 42.70 5.34
2707 4080 7.290842 GCACATAAAATGTCCAGATATACACG 58.709 38.462 0.00 0.00 42.70 4.49
2708 4081 7.042051 ACGCACATAAAATGTCCAGATATACAC 60.042 37.037 0.00 0.00 42.70 2.90
2710 4083 7.421530 ACGCACATAAAATGTCCAGATATAC 57.578 36.000 0.00 0.00 42.70 1.47
2711 4084 7.713073 TGAACGCACATAAAATGTCCAGATATA 59.287 33.333 0.00 0.00 42.70 0.86
2712 4085 6.542005 TGAACGCACATAAAATGTCCAGATAT 59.458 34.615 0.00 0.00 42.70 1.63
2715 4088 4.068599 TGAACGCACATAAAATGTCCAGA 58.931 39.130 0.00 0.00 42.70 3.86
2716 4089 4.158384 GTGAACGCACATAAAATGTCCAG 58.842 43.478 0.00 0.00 42.70 3.86
2729 4102 1.400494 ACTGAAACCTTGTGAACGCAC 59.600 47.619 0.00 0.00 45.35 5.34
2732 4105 4.349663 TTTCACTGAAACCTTGTGAACG 57.650 40.909 7.20 0.00 46.21 3.95
2735 4108 4.456222 TCGTTTTTCACTGAAACCTTGTGA 59.544 37.500 3.56 0.00 38.71 3.58
2738 4111 3.783943 CGTCGTTTTTCACTGAAACCTTG 59.216 43.478 3.56 0.00 34.35 3.61
2740 4113 3.004862 ACGTCGTTTTTCACTGAAACCT 58.995 40.909 3.56 0.00 34.35 3.50
2741 4114 3.394313 ACGTCGTTTTTCACTGAAACC 57.606 42.857 3.56 0.00 34.35 3.27
2742 4115 5.734443 AAAACGTCGTTTTTCACTGAAAC 57.266 34.783 26.23 0.00 42.11 2.78
2790 4163 2.162208 TGCTTCATTCACGAGGCATTTC 59.838 45.455 0.00 0.00 42.40 2.17
2791 4164 2.161855 TGCTTCATTCACGAGGCATTT 58.838 42.857 0.00 0.00 42.40 2.32
2792 4165 1.825090 TGCTTCATTCACGAGGCATT 58.175 45.000 0.00 0.00 42.40 3.56
2793 4166 3.556817 TGCTTCATTCACGAGGCAT 57.443 47.368 0.00 0.00 42.40 4.40
2796 4169 2.897436 TCTGATGCTTCATTCACGAGG 58.103 47.619 2.33 0.00 0.00 4.63
2799 4172 5.396484 ACAATTTCTGATGCTTCATTCACG 58.604 37.500 2.33 0.00 0.00 4.35
2800 4173 6.618811 AGACAATTTCTGATGCTTCATTCAC 58.381 36.000 2.33 0.00 31.12 3.18
2802 4175 8.530269 AAAAGACAATTTCTGATGCTTCATTC 57.470 30.769 2.33 0.00 33.46 2.67
2843 4235 3.468304 TTCGGTGAAAAACGACGTTTT 57.532 38.095 28.19 28.19 45.94 2.43
2844 4236 3.162831 GTTTCGGTGAAAAACGACGTTT 58.837 40.909 19.83 19.83 39.04 3.60
2845 4237 2.476018 GGTTTCGGTGAAAAACGACGTT 60.476 45.455 7.57 7.57 39.04 3.99
2847 4239 1.328374 AGGTTTCGGTGAAAAACGACG 59.672 47.619 0.00 0.00 39.04 5.12
2848 4240 3.103007 CAAGGTTTCGGTGAAAAACGAC 58.897 45.455 0.00 0.00 39.04 4.34
2849 4241 2.748532 ACAAGGTTTCGGTGAAAAACGA 59.251 40.909 0.00 0.00 37.46 3.85
2850 4242 2.849473 CACAAGGTTTCGGTGAAAAACG 59.151 45.455 0.00 0.00 37.46 3.60
2851 4243 4.099380 TCACAAGGTTTCGGTGAAAAAC 57.901 40.909 0.00 0.00 38.50 2.43
2855 4247 1.666700 CGTTCACAAGGTTTCGGTGAA 59.333 47.619 0.00 0.00 46.09 3.18
2856 4248 1.292061 CGTTCACAAGGTTTCGGTGA 58.708 50.000 0.00 0.00 39.60 4.02
2857 4249 0.316689 GCGTTCACAAGGTTTCGGTG 60.317 55.000 0.00 0.00 0.00 4.94
2858 4250 0.745128 TGCGTTCACAAGGTTTCGGT 60.745 50.000 0.00 0.00 0.00 4.69
2859 4251 0.316689 GTGCGTTCACAAGGTTTCGG 60.317 55.000 0.00 0.00 42.66 4.30
2860 4252 3.142796 GTGCGTTCACAAGGTTTCG 57.857 52.632 0.00 0.00 42.66 3.46
2875 4267 6.599437 GTGTATATCCGGACATTTTATGTGC 58.401 40.000 6.12 0.00 45.03 4.57
2882 4274 2.400399 CGCGTGTATATCCGGACATTT 58.600 47.619 6.12 0.00 0.00 2.32
2884 4276 0.242825 CCGCGTGTATATCCGGACAT 59.757 55.000 6.12 2.01 43.20 3.06
2886 4278 1.080974 CCCGCGTGTATATCCGGAC 60.081 63.158 6.12 0.00 43.20 4.79
2888 4280 0.245539 AATCCCGCGTGTATATCCGG 59.754 55.000 4.92 0.00 40.39 5.14
2890 4282 3.562557 ACAAAAATCCCGCGTGTATATCC 59.437 43.478 4.92 0.00 0.00 2.59
2891 4283 4.806342 ACAAAAATCCCGCGTGTATATC 57.194 40.909 4.92 0.00 0.00 1.63
2892 4284 5.570234 AAACAAAAATCCCGCGTGTATAT 57.430 34.783 4.92 0.00 0.00 0.86
2893 4285 4.435784 CGAAACAAAAATCCCGCGTGTATA 60.436 41.667 4.92 0.00 0.00 1.47
2894 4286 3.668491 CGAAACAAAAATCCCGCGTGTAT 60.668 43.478 4.92 0.00 0.00 2.29
2899 4295 2.039327 TTCGAAACAAAAATCCCGCG 57.961 45.000 0.00 0.00 0.00 6.46
2901 4297 6.938542 TGAAAAATTCGAAACAAAAATCCCG 58.061 32.000 0.00 0.00 0.00 5.14
2903 4299 9.767684 AAGTTGAAAAATTCGAAACAAAAATCC 57.232 25.926 0.00 0.00 18.72 3.01
2924 4320 7.094805 TGTCGAAATCCAAATTCCTAGAAGTTG 60.095 37.037 9.83 9.83 0.00 3.16
2929 4325 6.318648 CCATTGTCGAAATCCAAATTCCTAGA 59.681 38.462 0.00 0.00 0.00 2.43
2930 4326 6.460123 CCCATTGTCGAAATCCAAATTCCTAG 60.460 42.308 0.00 0.00 0.00 3.02
2931 4327 5.359576 CCCATTGTCGAAATCCAAATTCCTA 59.640 40.000 0.00 0.00 0.00 2.94
2933 4329 4.081697 ACCCATTGTCGAAATCCAAATTCC 60.082 41.667 0.00 0.00 0.00 3.01
2934 4330 4.864247 CACCCATTGTCGAAATCCAAATTC 59.136 41.667 0.00 0.00 0.00 2.17
2935 4331 4.819769 CACCCATTGTCGAAATCCAAATT 58.180 39.130 0.00 0.00 0.00 1.82
2938 4334 1.543802 GCACCCATTGTCGAAATCCAA 59.456 47.619 0.00 0.00 0.00 3.53
2939 4335 1.173043 GCACCCATTGTCGAAATCCA 58.827 50.000 0.00 0.00 0.00 3.41
2940 4336 1.173043 TGCACCCATTGTCGAAATCC 58.827 50.000 0.00 0.00 0.00 3.01
2941 4337 4.539870 CATATGCACCCATTGTCGAAATC 58.460 43.478 0.00 0.00 32.85 2.17
2942 4338 3.243501 GCATATGCACCCATTGTCGAAAT 60.244 43.478 22.84 0.00 41.59 2.17
2945 4341 1.308047 GCATATGCACCCATTGTCGA 58.692 50.000 22.84 0.00 41.59 4.20
2946 4342 3.851620 GCATATGCACCCATTGTCG 57.148 52.632 22.84 0.00 41.59 4.35
2957 4353 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
2958 4354 2.936919 TTGGCTCCTAGGTGCATATG 57.063 50.000 31.19 0.00 36.47 1.78
2959 4355 3.555966 GTTTTGGCTCCTAGGTGCATAT 58.444 45.455 31.19 0.00 36.47 1.78
2960 4356 2.679639 CGTTTTGGCTCCTAGGTGCATA 60.680 50.000 31.19 19.50 36.47 3.14
2962 4358 0.605319 CGTTTTGGCTCCTAGGTGCA 60.605 55.000 31.19 17.76 36.47 4.57
2964 4360 1.305930 GGCGTTTTGGCTCCTAGGTG 61.306 60.000 9.08 7.68 40.72 4.00
2965 4361 1.002502 GGCGTTTTGGCTCCTAGGT 60.003 57.895 9.08 0.00 40.72 3.08
2967 4363 0.321653 AGTGGCGTTTTGGCTCCTAG 60.322 55.000 0.00 0.00 45.14 3.02
2968 4364 0.321298 GAGTGGCGTTTTGGCTCCTA 60.321 55.000 0.00 0.00 45.14 2.94
2969 4365 1.600916 GAGTGGCGTTTTGGCTCCT 60.601 57.895 0.00 0.00 45.14 3.69
2970 4366 1.578206 GAGAGTGGCGTTTTGGCTCC 61.578 60.000 0.00 0.00 45.14 4.70
2971 4367 0.884704 TGAGAGTGGCGTTTTGGCTC 60.885 55.000 0.00 0.00 45.14 4.70
2972 4368 0.250901 ATGAGAGTGGCGTTTTGGCT 60.251 50.000 0.00 0.00 45.14 4.75
2973 4369 0.598065 AATGAGAGTGGCGTTTTGGC 59.402 50.000 0.00 0.00 45.12 4.52
2974 4370 1.879380 TGAATGAGAGTGGCGTTTTGG 59.121 47.619 0.00 0.00 0.00 3.28
2975 4371 3.837213 ATGAATGAGAGTGGCGTTTTG 57.163 42.857 0.00 0.00 0.00 2.44
2976 4372 3.820467 TGAATGAATGAGAGTGGCGTTTT 59.180 39.130 0.00 0.00 0.00 2.43
2977 4373 3.411446 TGAATGAATGAGAGTGGCGTTT 58.589 40.909 0.00 0.00 0.00 3.60
2979 4375 2.768253 TGAATGAATGAGAGTGGCGT 57.232 45.000 0.00 0.00 0.00 5.68
2980 4376 7.332678 TGAATATATGAATGAATGAGAGTGGCG 59.667 37.037 0.00 0.00 0.00 5.69
2981 4377 8.557592 TGAATATATGAATGAATGAGAGTGGC 57.442 34.615 0.00 0.00 0.00 5.01
3000 4396 9.547753 ACGAACTTCTGTTAGCATAATGAATAT 57.452 29.630 0.00 0.00 36.39 1.28
3001 4397 8.942338 ACGAACTTCTGTTAGCATAATGAATA 57.058 30.769 0.00 0.00 36.39 1.75
3002 4398 7.849804 ACGAACTTCTGTTAGCATAATGAAT 57.150 32.000 0.00 0.00 36.39 2.57
3003 4399 7.667043 AACGAACTTCTGTTAGCATAATGAA 57.333 32.000 0.00 0.00 36.39 2.57
3004 4400 7.360861 CCAAACGAACTTCTGTTAGCATAATGA 60.361 37.037 0.00 0.00 36.39 2.57
3005 4401 6.742718 CCAAACGAACTTCTGTTAGCATAATG 59.257 38.462 0.00 0.00 36.39 1.90
3006 4402 6.430000 ACCAAACGAACTTCTGTTAGCATAAT 59.570 34.615 0.00 0.00 36.39 1.28
3007 4403 5.761234 ACCAAACGAACTTCTGTTAGCATAA 59.239 36.000 0.00 0.00 36.39 1.90
3009 4405 4.134563 ACCAAACGAACTTCTGTTAGCAT 58.865 39.130 0.00 0.00 36.39 3.79
3010 4406 3.537580 ACCAAACGAACTTCTGTTAGCA 58.462 40.909 0.00 0.00 36.39 3.49
3011 4407 3.808174 AGACCAAACGAACTTCTGTTAGC 59.192 43.478 0.00 0.00 36.39 3.09
3012 4408 4.148348 CGAGACCAAACGAACTTCTGTTAG 59.852 45.833 0.00 0.00 36.39 2.34
3013 4409 4.046462 CGAGACCAAACGAACTTCTGTTA 58.954 43.478 0.00 0.00 36.39 2.41
3014 4410 2.864343 CGAGACCAAACGAACTTCTGTT 59.136 45.455 0.00 0.00 39.42 3.16
3016 4412 2.739292 TCGAGACCAAACGAACTTCTG 58.261 47.619 0.00 0.00 35.62 3.02
3017 4413 3.662247 ATCGAGACCAAACGAACTTCT 57.338 42.857 0.00 0.00 41.65 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.