Multiple sequence alignment - TraesCS6A01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G340600 chr6A 100.000 9194 0 0 1 9194 573514438 573505245 0.000000e+00 16979.0
1 TraesCS6A01G340600 chr6A 90.948 232 16 3 4 233 573867213 573866985 3.220000e-79 307.0
2 TraesCS6A01G340600 chr6D 98.399 4559 68 4 2588 7141 428927008 428922450 0.000000e+00 8010.0
3 TraesCS6A01G340600 chr6D 95.528 984 24 7 7107 8083 428922451 428921481 0.000000e+00 1555.0
4 TraesCS6A01G340600 chr6D 91.610 1025 68 9 1522 2544 428928241 428927233 0.000000e+00 1400.0
5 TraesCS6A01G340600 chr6D 92.270 815 42 14 686 1483 428929155 428928345 0.000000e+00 1136.0
6 TraesCS6A01G340600 chr6D 98.701 231 2 1 4 233 428931862 428931632 8.590000e-110 409.0
7 TraesCS6A01G340600 chr6B 96.029 4155 103 13 3972 8083 645552292 645548157 0.000000e+00 6702.0
8 TraesCS6A01G340600 chr6B 91.749 3042 166 39 994 3982 645555350 645552341 0.000000e+00 4148.0
9 TraesCS6A01G340600 chr6B 87.618 743 57 13 231 964 645556418 645555702 0.000000e+00 830.0
10 TraesCS6A01G340600 chr6B 88.546 227 17 2 7 233 645556677 645556460 5.470000e-67 267.0
11 TraesCS6A01G340600 chr7A 96.535 837 28 1 8358 9194 96531159 96530324 0.000000e+00 1384.0
12 TraesCS6A01G340600 chr7A 80.952 273 46 3 8358 8627 608434495 608434764 2.600000e-50 211.0
13 TraesCS6A01G340600 chr7A 94.286 70 3 1 3560 3628 486086991 486086922 1.260000e-18 106.0
14 TraesCS6A01G340600 chr2A 96.535 837 28 1 8358 9194 687499948 687499113 0.000000e+00 1384.0
15 TraesCS6A01G340600 chr2A 79.965 1128 176 34 3978 5088 740948636 740949730 0.000000e+00 785.0
16 TraesCS6A01G340600 chr2A 79.664 1131 174 39 3978 5088 740916382 740917476 0.000000e+00 763.0
17 TraesCS6A01G340600 chr2A 79.469 1130 175 33 3978 5088 740981688 740982779 0.000000e+00 749.0
18 TraesCS6A01G340600 chr2A 79.381 1130 177 34 3978 5088 741002550 741003642 0.000000e+00 745.0
19 TraesCS6A01G340600 chr2A 82.543 464 71 5 3978 4434 740933311 740933771 5.170000e-107 399.0
20 TraesCS6A01G340600 chr2A 89.610 77 6 2 3721 3795 740932977 740933053 7.600000e-16 97.1
21 TraesCS6A01G340600 chr3B 94.656 842 37 6 8359 9194 511624421 511625260 0.000000e+00 1299.0
22 TraesCS6A01G340600 chr7D 87.192 851 66 10 8358 9194 633183397 633184218 0.000000e+00 928.0
23 TraesCS6A01G340600 chr2D 86.824 850 70 10 8358 9194 450568694 450569514 0.000000e+00 911.0
24 TraesCS6A01G340600 chr2D 80.337 1129 169 36 3978 5088 609156252 609157345 0.000000e+00 806.0
25 TraesCS6A01G340600 chr2D 82.048 752 111 15 4038 4779 609211307 609212044 3.650000e-173 619.0
26 TraesCS6A01G340600 chr2D 90.210 429 35 6 8737 9160 181211085 181210659 3.750000e-153 553.0
27 TraesCS6A01G340600 chr2D 90.984 366 33 0 8359 8724 181211435 181211070 2.310000e-135 494.0
28 TraesCS6A01G340600 chr2D 78.676 680 120 15 4416 5088 609190363 609191024 6.600000e-116 429.0
29 TraesCS6A01G340600 chr2B 80.637 1131 163 33 3978 5088 743191921 743193015 0.000000e+00 824.0
30 TraesCS6A01G340600 chr2B 80.288 416 62 11 4377 4783 743187624 743188028 6.980000e-76 296.0
31 TraesCS6A01G340600 chr2B 97.015 67 2 0 3561 3627 321689907 321689841 7.550000e-21 113.0
32 TraesCS6A01G340600 chr2B 92.000 75 3 2 3555 3629 784526212 784526283 1.630000e-17 102.0
33 TraesCS6A01G340600 chr5A 84.597 844 63 21 8362 9194 594975052 594974265 0.000000e+00 776.0
34 TraesCS6A01G340600 chr5A 90.769 260 20 4 8787 9045 324487772 324488028 2.460000e-90 344.0
35 TraesCS6A01G340600 chr1D 89.051 411 30 9 8796 9194 403042408 403042815 6.410000e-136 496.0
36 TraesCS6A01G340600 chr1D 91.949 236 19 0 8359 8594 403042082 403042317 1.910000e-86 331.0
37 TraesCS6A01G340600 chr1D 97.297 74 2 0 8651 8724 403042318 403042391 9.690000e-25 126.0
38 TraesCS6A01G340600 chr3A 89.373 367 39 0 8359 8725 83240466 83240100 6.500000e-126 462.0
39 TraesCS6A01G340600 chr3A 89.474 95 10 0 8737 8831 83240116 83240022 4.510000e-23 121.0
40 TraesCS6A01G340600 chr1A 89.677 310 28 4 8737 9045 445541051 445540745 8.650000e-105 392.0
41 TraesCS6A01G340600 chr7B 94.872 78 2 2 3559 3635 699186072 699185996 4.510000e-23 121.0
42 TraesCS6A01G340600 chr5B 94.521 73 4 0 3558 3630 370194775 370194703 7.550000e-21 113.0
43 TraesCS6A01G340600 chr5B 94.521 73 4 0 3558 3630 370239635 370239563 7.550000e-21 113.0
44 TraesCS6A01G340600 chr4A 93.056 72 5 0 3559 3630 6936621 6936550 1.260000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G340600 chr6A 573505245 573514438 9193 True 16979.000000 16979 100.000000 1 9194 1 chr6A.!!$R1 9193
1 TraesCS6A01G340600 chr6D 428921481 428931862 10381 True 2502.000000 8010 95.301600 4 8083 5 chr6D.!!$R1 8079
2 TraesCS6A01G340600 chr6B 645548157 645556677 8520 True 2986.750000 6702 90.985500 7 8083 4 chr6B.!!$R1 8076
3 TraesCS6A01G340600 chr7A 96530324 96531159 835 True 1384.000000 1384 96.535000 8358 9194 1 chr7A.!!$R1 836
4 TraesCS6A01G340600 chr2A 687499113 687499948 835 True 1384.000000 1384 96.535000 8358 9194 1 chr2A.!!$R1 836
5 TraesCS6A01G340600 chr2A 740948636 740949730 1094 False 785.000000 785 79.965000 3978 5088 1 chr2A.!!$F2 1110
6 TraesCS6A01G340600 chr2A 740916382 740917476 1094 False 763.000000 763 79.664000 3978 5088 1 chr2A.!!$F1 1110
7 TraesCS6A01G340600 chr2A 740981688 740982779 1091 False 749.000000 749 79.469000 3978 5088 1 chr2A.!!$F3 1110
8 TraesCS6A01G340600 chr2A 741002550 741003642 1092 False 745.000000 745 79.381000 3978 5088 1 chr2A.!!$F4 1110
9 TraesCS6A01G340600 chr2A 740932977 740933771 794 False 248.050000 399 86.076500 3721 4434 2 chr2A.!!$F5 713
10 TraesCS6A01G340600 chr3B 511624421 511625260 839 False 1299.000000 1299 94.656000 8359 9194 1 chr3B.!!$F1 835
11 TraesCS6A01G340600 chr7D 633183397 633184218 821 False 928.000000 928 87.192000 8358 9194 1 chr7D.!!$F1 836
12 TraesCS6A01G340600 chr2D 450568694 450569514 820 False 911.000000 911 86.824000 8358 9194 1 chr2D.!!$F1 836
13 TraesCS6A01G340600 chr2D 609156252 609157345 1093 False 806.000000 806 80.337000 3978 5088 1 chr2D.!!$F2 1110
14 TraesCS6A01G340600 chr2D 609211307 609212044 737 False 619.000000 619 82.048000 4038 4779 1 chr2D.!!$F4 741
15 TraesCS6A01G340600 chr2D 181210659 181211435 776 True 523.500000 553 90.597000 8359 9160 2 chr2D.!!$R1 801
16 TraesCS6A01G340600 chr2D 609190363 609191024 661 False 429.000000 429 78.676000 4416 5088 1 chr2D.!!$F3 672
17 TraesCS6A01G340600 chr2B 743187624 743193015 5391 False 560.000000 824 80.462500 3978 5088 2 chr2B.!!$F2 1110
18 TraesCS6A01G340600 chr5A 594974265 594975052 787 True 776.000000 776 84.597000 8362 9194 1 chr5A.!!$R1 832
19 TraesCS6A01G340600 chr1D 403042082 403042815 733 False 317.666667 496 92.765667 8359 9194 3 chr1D.!!$F1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 1069 0.928229 CGGCGCTACAGGTAACATTC 59.072 55.0 7.64 0.00 41.41 2.67 F
1008 3369 0.248054 AAAAACTCACGCGCACACAG 60.248 50.0 5.73 0.00 0.00 3.66 F
1864 4308 0.525311 TGTTGTGTTGTGGCTGTGTG 59.475 50.0 0.00 0.00 0.00 3.82 F
1865 4309 0.808125 GTTGTGTTGTGGCTGTGTGA 59.192 50.0 0.00 0.00 0.00 3.58 F
3812 6471 0.690192 TCCCCTGCGAGTGAAAATCA 59.310 50.0 0.00 0.00 0.00 2.57 F
5366 8112 0.251474 AAGAGGCTTGCATTGCAGGA 60.251 50.0 23.31 3.89 40.61 3.86 F
5829 8575 1.034292 GCTCCCCAGAGTCAAATGGC 61.034 60.0 0.00 0.00 42.59 4.40 F
7637 10446 0.530431 GCAAACAACCTGGCACCTTG 60.530 55.0 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 4164 0.032952 TCTCACGTGAACCCGGAAAG 59.967 55.000 20.49 4.49 0.00 2.62 R
2132 4577 1.196808 CAACTGACCAACATACGCCAC 59.803 52.381 0.00 0.00 0.00 5.01 R
3799 6458 1.469767 GGGGCATTGATTTTCACTCGC 60.470 52.381 0.00 0.00 0.00 5.03 R
4021 6740 8.456471 CAACAATATTCTGATGCTCTCTGAAAA 58.544 33.333 11.20 0.00 42.77 2.29 R
5829 8575 0.179026 CTCATCAGATGCACCTGGGG 60.179 60.000 8.61 0.43 34.99 4.96 R
6311 9057 0.038166 ACTGGATGAATTGGTGCCGT 59.962 50.000 0.00 0.00 0.00 5.68 R
7651 10463 0.965866 TGCCACACAAACCAAACCGA 60.966 50.000 0.00 0.00 0.00 4.69 R
8474 11292 2.993220 TGATATGTCCGCATGCGTATTC 59.007 45.455 35.55 22.47 36.58 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 295 3.748048 TCAACATCTGCTCAAGTGCTAAC 59.252 43.478 0.00 0.00 0.00 2.34
281 801 3.583086 TCGAGTCCCATTTCTTCTCCTTT 59.417 43.478 0.00 0.00 0.00 3.11
284 804 4.916183 AGTCCCATTTCTTCTCCTTTGAG 58.084 43.478 0.00 0.00 40.17 3.02
290 810 5.356470 CCATTTCTTCTCCTTTGAGGTGATC 59.644 44.000 0.11 0.00 37.68 2.92
504 1024 1.136147 CATGGCGCTCAGTCTTTGC 59.864 57.895 7.64 0.00 0.00 3.68
506 1026 1.580845 ATGGCGCTCAGTCTTTGCAC 61.581 55.000 7.64 0.00 0.00 4.57
530 1050 3.041940 CTTGTCGGTCCGCACCAC 61.042 66.667 6.34 0.00 44.02 4.16
549 1069 0.928229 CGGCGCTACAGGTAACATTC 59.072 55.000 7.64 0.00 41.41 2.67
557 1077 5.186198 GCTACAGGTAACATTCTTGACCAT 58.814 41.667 0.00 0.00 41.41 3.55
558 1078 5.648092 GCTACAGGTAACATTCTTGACCATT 59.352 40.000 0.00 0.00 41.41 3.16
587 1107 6.721704 AATAATGGAAGGCCTCTTTCAATC 57.278 37.500 5.23 0.00 41.46 2.67
674 1198 2.597455 CCTCCATCCACCAACAAAACT 58.403 47.619 0.00 0.00 0.00 2.66
792 2820 7.680588 GCAAAGAATGTTCAGACAGAGAAACTT 60.681 37.037 0.00 0.00 39.58 2.66
1008 3369 0.248054 AAAAACTCACGCGCACACAG 60.248 50.000 5.73 0.00 0.00 3.66
1259 3626 1.116308 GGTGAGCTCCTCTTCCTACC 58.884 60.000 12.15 5.51 0.00 3.18
1269 3636 2.024273 CCTCTTCCTACCACTACTCCCA 60.024 54.545 0.00 0.00 0.00 4.37
1339 3706 5.887598 TGATGGAGTTCTGGGTGATTAATTG 59.112 40.000 0.00 0.00 0.00 2.32
1340 3707 5.512942 TGGAGTTCTGGGTGATTAATTGA 57.487 39.130 0.00 0.00 0.00 2.57
1341 3708 5.253330 TGGAGTTCTGGGTGATTAATTGAC 58.747 41.667 0.00 0.00 0.00 3.18
1342 3709 5.014123 TGGAGTTCTGGGTGATTAATTGACT 59.986 40.000 0.00 0.00 0.00 3.41
1343 3710 5.586643 GGAGTTCTGGGTGATTAATTGACTC 59.413 44.000 0.00 0.00 0.00 3.36
1345 3712 4.137116 TCTGGGTGATTAATTGACTCCG 57.863 45.455 0.00 0.00 0.00 4.63
1346 3713 3.772572 TCTGGGTGATTAATTGACTCCGA 59.227 43.478 0.00 0.00 0.00 4.55
1348 3715 5.600898 TCTGGGTGATTAATTGACTCCGATA 59.399 40.000 0.00 0.00 0.00 2.92
1349 3716 6.099125 TCTGGGTGATTAATTGACTCCGATAA 59.901 38.462 0.00 0.00 0.00 1.75
1373 3740 2.308866 TCCAGATCTTTGGAAGGGAACC 59.691 50.000 1.25 0.00 46.31 3.62
1374 3741 2.621668 CCAGATCTTTGGAAGGGAACCC 60.622 54.545 0.94 0.94 46.49 4.11
1421 3793 5.611412 CGGTTTATGCGTTGATTTGGTTTTG 60.611 40.000 0.00 0.00 0.00 2.44
1422 3794 5.333721 GGTTTATGCGTTGATTTGGTTTTGG 60.334 40.000 0.00 0.00 0.00 3.28
1442 3814 4.469052 CCGTGTTAATTTGCCGGC 57.531 55.556 22.73 22.73 0.00 6.13
1447 3819 2.324860 GTGTTAATTTGCCGGCAGAAC 58.675 47.619 30.75 27.83 0.00 3.01
1465 3837 0.734889 ACATGCGTAATCTTGGCTGC 59.265 50.000 0.00 0.00 0.00 5.25
1483 3855 0.924090 GCGAGTTTGTCCGCTATCTG 59.076 55.000 0.00 0.00 46.96 2.90
1485 3857 2.186076 CGAGTTTGTCCGCTATCTGTC 58.814 52.381 0.00 0.00 0.00 3.51
1515 3948 2.269940 AGGTTTAGTGAGCATGGAGGT 58.730 47.619 0.00 0.00 0.00 3.85
1517 3950 2.290323 GGTTTAGTGAGCATGGAGGTGT 60.290 50.000 0.00 0.00 0.00 4.16
1585 4023 4.494526 CGTGTTAATTTGCCGGTACCATAC 60.495 45.833 13.54 0.38 0.00 2.39
1591 4029 1.370900 GCCGGTACCATACGCGTAG 60.371 63.158 24.78 14.20 0.00 3.51
1596 4034 1.265365 GGTACCATACGCGTAGTCTCC 59.735 57.143 24.78 17.53 0.00 3.71
1608 4046 1.461127 GTAGTCTCCGCTGCAAGTTTG 59.539 52.381 0.00 0.00 35.30 2.93
1647 4085 2.427506 GTTTAGTGAGAGGGGCTTGTG 58.572 52.381 0.00 0.00 0.00 3.33
1725 4163 2.126502 CAACGCCATGGTTTCCGC 60.127 61.111 14.67 0.00 0.00 5.54
1726 4164 3.370231 AACGCCATGGTTTCCGCC 61.370 61.111 14.67 0.00 0.00 6.13
1730 4168 1.215382 GCCATGGTTTCCGCCTTTC 59.785 57.895 14.67 0.00 0.00 2.62
1731 4169 1.890174 CCATGGTTTCCGCCTTTCC 59.110 57.895 2.57 0.00 0.00 3.13
1732 4170 1.506262 CATGGTTTCCGCCTTTCCG 59.494 57.895 0.00 0.00 0.00 4.30
1778 4216 0.978667 TGCGGATGGTGGGCTAAGTA 60.979 55.000 0.00 0.00 0.00 2.24
1863 4307 0.525761 GTGTTGTGTTGTGGCTGTGT 59.474 50.000 0.00 0.00 0.00 3.72
1864 4308 0.525311 TGTTGTGTTGTGGCTGTGTG 59.475 50.000 0.00 0.00 0.00 3.82
1865 4309 0.808125 GTTGTGTTGTGGCTGTGTGA 59.192 50.000 0.00 0.00 0.00 3.58
1866 4310 1.201181 GTTGTGTTGTGGCTGTGTGAA 59.799 47.619 0.00 0.00 0.00 3.18
1979 4424 3.772572 ACCTAAAAGTTGTTTGGTTGCCT 59.227 39.130 0.00 0.00 33.53 4.75
2063 4508 4.679373 ATGTCTGAGGTATAAGTGCCTG 57.321 45.455 0.00 0.00 40.92 4.85
2078 4523 0.903942 GCCTGGATTTTGCCCATGAA 59.096 50.000 0.00 0.00 32.49 2.57
2110 4555 7.107542 TGTCTATATTCCGCTTGTTTAGGTTT 58.892 34.615 0.00 0.00 0.00 3.27
2132 4577 7.375834 GTTTTTAGTTTATCAGTTCCCCTTGG 58.624 38.462 0.00 0.00 0.00 3.61
2137 4582 2.484287 ATCAGTTCCCCTTGGTGGCG 62.484 60.000 0.00 0.00 0.00 5.69
2162 4607 2.685897 GTTGGTCAGTTGGCAGTTTGTA 59.314 45.455 0.00 0.00 0.00 2.41
2172 4617 9.019656 TCAGTTGGCAGTTTGTATATGTTATTT 57.980 29.630 0.00 0.00 0.00 1.40
2204 4649 3.686016 TGTTTAGACCCATCAAAGGAGC 58.314 45.455 0.00 0.00 0.00 4.70
2212 4657 2.629617 CCCATCAAAGGAGCTGTTTTGT 59.370 45.455 15.40 4.91 36.09 2.83
2213 4658 3.070015 CCCATCAAAGGAGCTGTTTTGTT 59.930 43.478 15.40 7.84 36.09 2.83
2396 4841 5.888901 TCCTTTCTCTAGGAGTAAGTGTGA 58.111 41.667 11.10 2.24 39.40 3.58
2397 4842 6.494952 TCCTTTCTCTAGGAGTAAGTGTGAT 58.505 40.000 11.10 0.00 39.40 3.06
2457 4902 3.196685 TGGGCCACCATAATTAGTTTTGC 59.803 43.478 0.00 0.00 43.37 3.68
2526 4971 5.973899 TGCCAAACAAATATAACTCAGCA 57.026 34.783 0.00 0.00 0.00 4.41
2590 5216 3.705579 TCCCCCTTTATTTGTGATGCATG 59.294 43.478 2.46 0.00 0.00 4.06
2642 5268 7.010460 CGTTTTAGTCATCTGTGATATGCAGAA 59.990 37.037 9.73 0.00 44.82 3.02
2699 5325 8.960591 CAGTTAAAGATGACCCAAACTATTGAT 58.039 33.333 0.00 0.00 38.94 2.57
2707 5333 8.877864 ATGACCCAAACTATTGATAAAGTTGA 57.122 30.769 0.00 0.00 38.94 3.18
2801 5428 5.437060 TGACTTTTAGAAGAACCAGCAACT 58.563 37.500 0.00 0.00 36.69 3.16
2855 5483 2.102578 GTAGGCTTAGGGTTCCACGTA 58.897 52.381 0.00 0.00 0.00 3.57
3222 5856 4.853924 AGTTGTTGATGCCGAAGATTTT 57.146 36.364 0.00 0.00 0.00 1.82
3239 5873 7.062605 CGAAGATTTTTGTTATTGCTGCTTCAT 59.937 33.333 0.00 0.00 0.00 2.57
3386 6020 7.989741 AGAGTGTTATTTGTCTATGGATCTTGG 59.010 37.037 0.00 0.00 0.00 3.61
3469 6103 4.076394 GTTTGGCTTTGTGTGGATACCTA 58.924 43.478 0.00 0.00 0.00 3.08
3799 6458 3.244700 ACACTCTCAGAACAAATCCCCTG 60.245 47.826 0.00 0.00 0.00 4.45
3812 6471 0.690192 TCCCCTGCGAGTGAAAATCA 59.310 50.000 0.00 0.00 0.00 2.57
4112 6831 7.172190 ACATCCGCAATTTCATCAGACTAATAG 59.828 37.037 0.00 0.00 0.00 1.73
4691 7419 5.480205 CAGTTACTTCCCTTCTTAGTGACC 58.520 45.833 0.00 0.00 31.06 4.02
4837 7572 4.144297 TGGAGTTGAAGCTTTGCTATTGT 58.856 39.130 0.00 0.00 38.25 2.71
5366 8112 0.251474 AAGAGGCTTGCATTGCAGGA 60.251 50.000 23.31 3.89 40.61 3.86
5629 8375 5.032863 GCAAGTTGCAGATATGTTCATGAC 58.967 41.667 22.90 0.00 44.26 3.06
5829 8575 1.034292 GCTCCCCAGAGTCAAATGGC 61.034 60.000 0.00 0.00 42.59 4.40
6126 8872 3.306973 GCTTCAAAACAGCCACAGTTTTC 59.693 43.478 0.00 0.00 44.72 2.29
6219 8965 2.557924 CTGCTACCACTGGCAATTTGAA 59.442 45.455 0.00 0.00 38.02 2.69
6236 8982 7.495279 GCAATTTGAATATGCAAACTGGGATAA 59.505 33.333 17.20 0.00 40.23 1.75
6311 9057 5.489792 AGATGCAGTTCCTCAAACTTCTA 57.510 39.130 0.00 0.00 46.26 2.10
6312 9058 5.241662 AGATGCAGTTCCTCAAACTTCTAC 58.758 41.667 0.00 0.00 46.26 2.59
6381 9127 7.185565 TCCATGTTCCCTTTTAATATCCAACA 58.814 34.615 0.00 0.00 0.00 3.33
6609 9385 7.980662 TGCATTTAATGGACATAATTTCAGTGG 59.019 33.333 7.08 0.00 0.00 4.00
6628 9404 2.671177 CGCTGGTCAAGTTCCGCAG 61.671 63.158 0.00 0.00 0.00 5.18
7416 10225 1.583054 GCAGACTTTGTGAAGGACGT 58.417 50.000 0.00 0.00 37.19 4.34
7634 10443 1.519719 TTGCAAACAACCTGGCACC 59.480 52.632 0.00 0.00 35.74 5.01
7637 10446 0.530431 GCAAACAACCTGGCACCTTG 60.530 55.000 0.00 0.00 0.00 3.61
7644 10453 2.627699 CAACCTGGCACCTTGTTATGTT 59.372 45.455 0.00 0.00 0.00 2.71
7646 10455 2.158534 ACCTGGCACCTTGTTATGTTGA 60.159 45.455 0.00 0.00 0.00 3.18
7651 10463 5.321102 TGGCACCTTGTTATGTTGACTAAT 58.679 37.500 0.00 0.00 0.00 1.73
7674 10486 1.260538 TTTGGTTTGTGTGGCAGGCA 61.261 50.000 0.00 0.00 0.00 4.75
7899 10711 5.200368 ACACCATTTGAAACATGAACCTC 57.800 39.130 0.00 0.00 0.00 3.85
7964 10776 1.642843 GTCGTCGTCGTCTTCATGAAC 59.357 52.381 3.38 0.00 38.33 3.18
7965 10777 1.264826 TCGTCGTCGTCTTCATGAACA 59.735 47.619 3.38 0.00 38.33 3.18
7966 10778 1.382419 CGTCGTCGTCTTCATGAACAC 59.618 52.381 3.38 3.69 0.00 3.32
7967 10779 1.719780 GTCGTCGTCTTCATGAACACC 59.280 52.381 3.38 0.00 0.00 4.16
7968 10780 0.708370 CGTCGTCTTCATGAACACCG 59.292 55.000 3.38 7.14 0.00 4.94
8048 10864 3.566351 TCAAACTCTGTCCTCTGTCTGA 58.434 45.455 0.00 0.00 0.00 3.27
8070 10886 6.872920 TGATTGGTTGTTTGTTTCTTTAGCT 58.127 32.000 0.00 0.00 0.00 3.32
8098 10914 7.426929 TTCTCTGAACTTTCTGAAGTAATGC 57.573 36.000 0.92 0.00 45.18 3.56
8099 10915 5.934625 TCTCTGAACTTTCTGAAGTAATGCC 59.065 40.000 0.92 0.00 45.18 4.40
8100 10916 5.869579 TCTGAACTTTCTGAAGTAATGCCT 58.130 37.500 0.00 0.00 45.18 4.75
8101 10917 5.702670 TCTGAACTTTCTGAAGTAATGCCTG 59.297 40.000 0.00 0.00 45.18 4.85
8102 10918 4.761739 TGAACTTTCTGAAGTAATGCCTGG 59.238 41.667 0.00 0.00 45.18 4.45
8103 10919 3.084786 ACTTTCTGAAGTAATGCCTGGC 58.915 45.455 12.87 12.87 44.13 4.85
8104 10920 1.737838 TTCTGAAGTAATGCCTGGCG 58.262 50.000 14.98 0.00 0.00 5.69
8105 10921 0.613260 TCTGAAGTAATGCCTGGCGT 59.387 50.000 14.98 11.57 0.00 5.68
8106 10922 0.729116 CTGAAGTAATGCCTGGCGTG 59.271 55.000 15.33 0.00 0.00 5.34
8107 10923 0.036164 TGAAGTAATGCCTGGCGTGT 59.964 50.000 15.33 7.43 0.00 4.49
8108 10924 1.165270 GAAGTAATGCCTGGCGTGTT 58.835 50.000 15.33 11.24 0.00 3.32
8109 10925 0.881118 AAGTAATGCCTGGCGTGTTG 59.119 50.000 15.33 0.00 0.00 3.33
8110 10926 0.036164 AGTAATGCCTGGCGTGTTGA 59.964 50.000 15.33 0.00 0.00 3.18
8111 10927 0.447801 GTAATGCCTGGCGTGTTGAG 59.552 55.000 15.33 0.00 0.00 3.02
8112 10928 0.676466 TAATGCCTGGCGTGTTGAGG 60.676 55.000 15.33 0.00 0.00 3.86
8113 10929 2.410322 AATGCCTGGCGTGTTGAGGA 62.410 55.000 15.33 0.00 0.00 3.71
8114 10930 2.743928 GCCTGGCGTGTTGAGGAG 60.744 66.667 1.35 0.00 0.00 3.69
8115 10931 3.059982 CCTGGCGTGTTGAGGAGA 58.940 61.111 0.00 0.00 0.00 3.71
8116 10932 1.371183 CCTGGCGTGTTGAGGAGAA 59.629 57.895 0.00 0.00 0.00 2.87
8117 10933 0.250295 CCTGGCGTGTTGAGGAGAAA 60.250 55.000 0.00 0.00 0.00 2.52
8118 10934 1.151668 CTGGCGTGTTGAGGAGAAAG 58.848 55.000 0.00 0.00 0.00 2.62
8119 10935 0.884704 TGGCGTGTTGAGGAGAAAGC 60.885 55.000 0.00 0.00 0.00 3.51
8120 10936 0.884704 GGCGTGTTGAGGAGAAAGCA 60.885 55.000 0.00 0.00 0.00 3.91
8121 10937 0.514691 GCGTGTTGAGGAGAAAGCAG 59.485 55.000 0.00 0.00 0.00 4.24
8122 10938 0.514691 CGTGTTGAGGAGAAAGCAGC 59.485 55.000 0.00 0.00 0.00 5.25
8123 10939 1.875576 CGTGTTGAGGAGAAAGCAGCT 60.876 52.381 0.00 0.00 0.00 4.24
8124 10940 2.610479 CGTGTTGAGGAGAAAGCAGCTA 60.610 50.000 0.00 0.00 0.00 3.32
8125 10941 3.604582 GTGTTGAGGAGAAAGCAGCTAT 58.395 45.455 0.00 0.00 0.00 2.97
8126 10942 3.373439 GTGTTGAGGAGAAAGCAGCTATG 59.627 47.826 0.00 0.00 0.00 2.23
8127 10943 3.261643 TGTTGAGGAGAAAGCAGCTATGA 59.738 43.478 0.00 0.00 0.00 2.15
8128 10944 3.815856 TGAGGAGAAAGCAGCTATGAG 57.184 47.619 0.00 0.00 0.00 2.90
8129 10945 2.158986 TGAGGAGAAAGCAGCTATGAGC 60.159 50.000 0.00 0.00 42.84 4.26
8138 10954 4.345337 GCTATGAGCGGTAGCCAC 57.655 61.111 6.75 0.00 46.67 5.01
8139 10955 1.441729 GCTATGAGCGGTAGCCACA 59.558 57.895 6.75 0.00 46.67 4.17
8140 10956 0.034059 GCTATGAGCGGTAGCCACAT 59.966 55.000 6.75 0.00 46.67 3.21
8141 10957 1.272490 GCTATGAGCGGTAGCCACATA 59.728 52.381 6.75 0.00 46.67 2.29
8142 10958 2.927014 GCTATGAGCGGTAGCCACATAC 60.927 54.545 6.75 0.00 46.67 2.39
8143 10959 1.414158 ATGAGCGGTAGCCACATACT 58.586 50.000 0.00 0.00 46.67 2.12
8144 10960 0.459899 TGAGCGGTAGCCACATACTG 59.540 55.000 0.00 0.00 46.67 2.74
8145 10961 0.460311 GAGCGGTAGCCACATACTGT 59.540 55.000 0.00 0.00 46.67 3.55
8146 10962 0.460311 AGCGGTAGCCACATACTGTC 59.540 55.000 0.00 0.00 46.67 3.51
8147 10963 0.174845 GCGGTAGCCACATACTGTCA 59.825 55.000 0.00 0.00 34.97 3.58
8148 10964 1.922570 CGGTAGCCACATACTGTCAC 58.077 55.000 0.00 0.00 0.00 3.67
8149 10965 1.476891 CGGTAGCCACATACTGTCACT 59.523 52.381 0.00 0.00 0.00 3.41
8150 10966 2.735444 CGGTAGCCACATACTGTCACTG 60.735 54.545 0.00 0.00 0.00 3.66
8151 10967 2.496070 GGTAGCCACATACTGTCACTGA 59.504 50.000 0.00 0.00 0.00 3.41
8152 10968 3.429547 GGTAGCCACATACTGTCACTGAG 60.430 52.174 0.00 0.00 0.00 3.35
8153 10969 2.529632 AGCCACATACTGTCACTGAGA 58.470 47.619 0.00 0.00 0.00 3.27
8154 10970 2.899900 AGCCACATACTGTCACTGAGAA 59.100 45.455 0.00 0.00 0.00 2.87
8155 10971 3.517100 AGCCACATACTGTCACTGAGAAT 59.483 43.478 0.00 0.00 0.00 2.40
8156 10972 3.620374 GCCACATACTGTCACTGAGAATG 59.380 47.826 0.00 0.00 0.00 2.67
8157 10973 4.621510 GCCACATACTGTCACTGAGAATGA 60.622 45.833 0.00 0.00 0.00 2.57
8158 10974 5.107824 CCACATACTGTCACTGAGAATGAG 58.892 45.833 0.00 0.00 0.00 2.90
8159 10975 5.105595 CCACATACTGTCACTGAGAATGAGA 60.106 44.000 0.00 0.00 0.00 3.27
8160 10976 6.035217 CACATACTGTCACTGAGAATGAGAG 58.965 44.000 0.00 0.00 41.90 3.20
8162 10978 4.782019 ACTGTCACTGAGAATGAGAGTC 57.218 45.455 0.00 0.00 44.90 3.36
8163 10979 4.406456 ACTGTCACTGAGAATGAGAGTCT 58.594 43.478 0.00 0.00 44.90 3.24
8164 10980 4.458989 ACTGTCACTGAGAATGAGAGTCTC 59.541 45.833 13.56 13.56 44.90 3.36
8165 10981 4.661222 TGTCACTGAGAATGAGAGTCTCT 58.339 43.478 20.64 0.70 41.80 3.10
8166 10982 5.076182 TGTCACTGAGAATGAGAGTCTCTT 58.924 41.667 20.64 12.00 41.80 2.85
8167 10983 5.538053 TGTCACTGAGAATGAGAGTCTCTTT 59.462 40.000 20.64 19.49 41.80 2.52
8168 10984 5.863397 GTCACTGAGAATGAGAGTCTCTTTG 59.137 44.000 22.23 12.24 41.80 2.77
8169 10985 5.047448 TCACTGAGAATGAGAGTCTCTTTGG 60.047 44.000 22.23 12.98 41.80 3.28
8170 10986 4.837860 ACTGAGAATGAGAGTCTCTTTGGT 59.162 41.667 22.23 11.51 41.80 3.67
8171 10987 6.013379 ACTGAGAATGAGAGTCTCTTTGGTA 58.987 40.000 22.23 9.50 41.80 3.25
8172 10988 6.495181 ACTGAGAATGAGAGTCTCTTTGGTAA 59.505 38.462 22.23 1.60 41.80 2.85
8173 10989 7.015682 ACTGAGAATGAGAGTCTCTTTGGTAAA 59.984 37.037 22.23 0.89 41.80 2.01
8174 10990 7.911651 TGAGAATGAGAGTCTCTTTGGTAAAT 58.088 34.615 22.23 3.19 41.80 1.40
8175 10991 7.821359 TGAGAATGAGAGTCTCTTTGGTAAATG 59.179 37.037 22.23 0.00 41.80 2.32
8176 10992 7.108847 AGAATGAGAGTCTCTTTGGTAAATGG 58.891 38.462 22.23 0.00 29.90 3.16
8177 10993 6.627087 ATGAGAGTCTCTTTGGTAAATGGA 57.373 37.500 20.64 0.00 0.00 3.41
8178 10994 6.433847 TGAGAGTCTCTTTGGTAAATGGAA 57.566 37.500 20.64 0.00 0.00 3.53
8179 10995 6.467677 TGAGAGTCTCTTTGGTAAATGGAAG 58.532 40.000 20.64 0.00 0.00 3.46
8180 10996 6.043243 TGAGAGTCTCTTTGGTAAATGGAAGT 59.957 38.462 20.64 0.00 0.00 3.01
8181 10997 6.842676 AGAGTCTCTTTGGTAAATGGAAGTT 58.157 36.000 0.00 0.00 0.00 2.66
8182 10998 7.974504 AGAGTCTCTTTGGTAAATGGAAGTTA 58.025 34.615 0.00 0.00 0.00 2.24
8183 10999 8.606830 AGAGTCTCTTTGGTAAATGGAAGTTAT 58.393 33.333 0.00 0.00 0.00 1.89
8184 11000 8.794335 AGTCTCTTTGGTAAATGGAAGTTATC 57.206 34.615 0.00 0.00 0.00 1.75
8199 11015 6.836577 GAAGTTATCCAGATTCAGTGTAGC 57.163 41.667 0.00 0.00 0.00 3.58
8200 11016 5.939764 AGTTATCCAGATTCAGTGTAGCA 57.060 39.130 0.00 0.00 0.00 3.49
8201 11017 6.491714 AGTTATCCAGATTCAGTGTAGCAT 57.508 37.500 0.00 0.00 0.00 3.79
8202 11018 7.603180 AGTTATCCAGATTCAGTGTAGCATA 57.397 36.000 0.00 0.00 0.00 3.14
8203 11019 7.437748 AGTTATCCAGATTCAGTGTAGCATAC 58.562 38.462 0.00 0.00 43.42 2.39
8204 11020 7.288852 AGTTATCCAGATTCAGTGTAGCATACT 59.711 37.037 0.00 0.00 43.54 2.12
8205 11021 5.268118 TCCAGATTCAGTGTAGCATACTG 57.732 43.478 8.26 8.26 43.54 2.74
8206 11022 4.711846 TCCAGATTCAGTGTAGCATACTGT 59.288 41.667 12.68 0.00 44.49 3.55
8207 11023 5.046529 CCAGATTCAGTGTAGCATACTGTC 58.953 45.833 12.68 6.33 44.49 3.51
8208 11024 5.163468 CCAGATTCAGTGTAGCATACTGTCT 60.163 44.000 12.68 8.01 44.49 3.41
8209 11025 5.747675 CAGATTCAGTGTAGCATACTGTCTG 59.252 44.000 14.90 14.90 44.49 3.51
8210 11026 5.654209 AGATTCAGTGTAGCATACTGTCTGA 59.346 40.000 12.68 10.88 44.49 3.27
8211 11027 5.921962 TTCAGTGTAGCATACTGTCTGAT 57.078 39.130 12.68 0.00 44.49 2.90
8212 11028 7.503902 AGATTCAGTGTAGCATACTGTCTGATA 59.496 37.037 12.68 0.00 44.49 2.15
8213 11029 7.588497 TTCAGTGTAGCATACTGTCTGATAT 57.412 36.000 12.68 0.00 44.49 1.63
8214 11030 6.974965 TCAGTGTAGCATACTGTCTGATATG 58.025 40.000 12.68 0.00 44.49 1.78
8215 11031 6.772716 TCAGTGTAGCATACTGTCTGATATGA 59.227 38.462 12.68 0.00 44.49 2.15
8216 11032 7.449704 TCAGTGTAGCATACTGTCTGATATGAT 59.550 37.037 12.68 0.00 44.49 2.45
8217 11033 8.734386 CAGTGTAGCATACTGTCTGATATGATA 58.266 37.037 6.80 0.00 43.54 2.15
8218 11034 9.473007 AGTGTAGCATACTGTCTGATATGATAT 57.527 33.333 0.00 0.00 43.54 1.63
8228 11044 9.919416 ACTGTCTGATATGATATATAGCAGTCT 57.081 33.333 6.84 0.00 38.66 3.24
8242 11058 3.575858 GCAGTCTTGCGTACACATATG 57.424 47.619 0.00 0.00 41.13 1.78
8243 11059 2.285834 GCAGTCTTGCGTACACATATGC 60.286 50.000 1.58 0.00 41.13 3.14
8244 11060 3.190079 CAGTCTTGCGTACACATATGCT 58.810 45.455 1.58 0.00 42.87 3.79
8245 11061 3.000623 CAGTCTTGCGTACACATATGCTG 59.999 47.826 1.58 3.33 42.87 4.41
8246 11062 1.933181 TCTTGCGTACACATATGCTGC 59.067 47.619 1.58 0.00 42.87 5.25
8247 11063 1.665169 CTTGCGTACACATATGCTGCA 59.335 47.619 4.13 4.13 42.87 4.41
8248 11064 1.289276 TGCGTACACATATGCTGCAG 58.711 50.000 10.11 10.11 42.87 4.41
8249 11065 1.290203 GCGTACACATATGCTGCAGT 58.710 50.000 16.64 2.41 39.81 4.40
8250 11066 1.665679 GCGTACACATATGCTGCAGTT 59.334 47.619 16.64 6.05 39.81 3.16
8251 11067 2.285834 GCGTACACATATGCTGCAGTTC 60.286 50.000 16.64 0.00 39.81 3.01
8252 11068 2.929398 CGTACACATATGCTGCAGTTCA 59.071 45.455 16.64 5.99 0.00 3.18
8253 11069 3.000623 CGTACACATATGCTGCAGTTCAG 59.999 47.826 16.64 4.75 45.62 3.02
8254 11070 3.063510 ACACATATGCTGCAGTTCAGT 57.936 42.857 16.64 5.40 44.66 3.41
8255 11071 4.206477 ACACATATGCTGCAGTTCAGTA 57.794 40.909 16.64 2.13 44.66 2.74
8256 11072 3.935203 ACACATATGCTGCAGTTCAGTAC 59.065 43.478 16.64 0.00 44.66 2.73
8257 11073 3.934579 CACATATGCTGCAGTTCAGTACA 59.065 43.478 16.64 2.74 44.66 2.90
8258 11074 4.033702 CACATATGCTGCAGTTCAGTACAG 59.966 45.833 16.64 0.00 44.66 2.74
8259 11075 2.847327 ATGCTGCAGTTCAGTACAGT 57.153 45.000 16.64 0.00 44.66 3.55
8260 11076 1.869774 TGCTGCAGTTCAGTACAGTG 58.130 50.000 16.64 0.00 44.66 3.66
8261 11077 0.514691 GCTGCAGTTCAGTACAGTGC 59.485 55.000 16.64 4.88 44.66 4.40
8262 11078 1.869774 CTGCAGTTCAGTACAGTGCA 58.130 50.000 5.25 12.20 41.72 4.57
8263 11079 1.869774 TGCAGTTCAGTACAGTGCAG 58.130 50.000 9.48 0.00 39.17 4.41
8264 11080 1.151668 GCAGTTCAGTACAGTGCAGG 58.848 55.000 6.62 0.00 34.18 4.85
8265 11081 1.151668 CAGTTCAGTACAGTGCAGGC 58.848 55.000 0.00 0.00 0.00 4.85
8266 11082 1.051812 AGTTCAGTACAGTGCAGGCT 58.948 50.000 0.00 0.00 0.00 4.58
8267 11083 1.151668 GTTCAGTACAGTGCAGGCTG 58.848 55.000 10.94 10.94 41.92 4.85
8269 11085 1.627864 TCAGTACAGTGCAGGCTGTA 58.372 50.000 17.16 9.18 46.68 2.74
8274 11090 2.680312 ACAGTGCAGGCTGTAGTATG 57.320 50.000 17.16 12.75 46.68 2.39
8275 11091 1.902508 ACAGTGCAGGCTGTAGTATGT 59.097 47.619 17.16 13.38 46.68 2.29
8276 11092 2.303022 ACAGTGCAGGCTGTAGTATGTT 59.697 45.455 17.16 0.00 46.68 2.71
8277 11093 2.674852 CAGTGCAGGCTGTAGTATGTTG 59.325 50.000 17.16 0.00 0.00 3.33
8278 11094 1.398390 GTGCAGGCTGTAGTATGTTGC 59.602 52.381 17.16 0.00 0.00 4.17
8279 11095 1.278985 TGCAGGCTGTAGTATGTTGCT 59.721 47.619 17.16 0.00 0.00 3.91
8280 11096 2.290260 TGCAGGCTGTAGTATGTTGCTT 60.290 45.455 17.16 0.00 0.00 3.91
8281 11097 2.096496 GCAGGCTGTAGTATGTTGCTTG 59.904 50.000 17.16 0.00 34.55 4.01
8282 11098 2.096496 CAGGCTGTAGTATGTTGCTTGC 59.904 50.000 6.28 0.00 0.00 4.01
8283 11099 2.083774 GGCTGTAGTATGTTGCTTGCA 58.916 47.619 0.00 0.00 0.00 4.08
8284 11100 2.159517 GGCTGTAGTATGTTGCTTGCAC 60.160 50.000 0.00 0.00 0.00 4.57
8285 11101 2.159517 GCTGTAGTATGTTGCTTGCACC 60.160 50.000 0.00 0.00 0.00 5.01
8286 11102 3.073678 CTGTAGTATGTTGCTTGCACCA 58.926 45.455 0.00 0.00 0.00 4.17
8287 11103 3.481453 TGTAGTATGTTGCTTGCACCAA 58.519 40.909 0.00 0.00 0.00 3.67
8288 11104 3.885901 TGTAGTATGTTGCTTGCACCAAA 59.114 39.130 0.00 0.00 0.00 3.28
8289 11105 3.648339 AGTATGTTGCTTGCACCAAAG 57.352 42.857 0.00 0.00 0.00 2.77
8290 11106 2.958355 AGTATGTTGCTTGCACCAAAGT 59.042 40.909 0.00 0.00 0.00 2.66
8291 11107 2.985957 ATGTTGCTTGCACCAAAGTT 57.014 40.000 0.00 0.00 0.00 2.66
8292 11108 4.582656 AGTATGTTGCTTGCACCAAAGTTA 59.417 37.500 0.00 0.00 0.00 2.24
8293 11109 3.435105 TGTTGCTTGCACCAAAGTTAG 57.565 42.857 0.00 0.00 0.00 2.34
8294 11110 2.100584 TGTTGCTTGCACCAAAGTTAGG 59.899 45.455 0.00 0.00 0.00 2.69
8295 11111 1.327303 TGCTTGCACCAAAGTTAGGG 58.673 50.000 0.00 0.00 0.00 3.53
8296 11112 1.328279 GCTTGCACCAAAGTTAGGGT 58.672 50.000 0.00 0.00 38.10 4.34
8297 11113 1.686587 GCTTGCACCAAAGTTAGGGTT 59.313 47.619 0.00 0.00 34.45 4.11
8298 11114 2.888414 GCTTGCACCAAAGTTAGGGTTA 59.112 45.455 0.00 0.00 34.45 2.85
8299 11115 3.057526 GCTTGCACCAAAGTTAGGGTTAG 60.058 47.826 0.00 0.00 34.45 2.34
8300 11116 3.868619 TGCACCAAAGTTAGGGTTAGT 57.131 42.857 0.00 0.00 34.45 2.24
8301 11117 4.173290 TGCACCAAAGTTAGGGTTAGTT 57.827 40.909 0.00 0.00 34.45 2.24
8302 11118 3.886505 TGCACCAAAGTTAGGGTTAGTTG 59.113 43.478 0.00 0.00 34.45 3.16
8303 11119 3.887110 GCACCAAAGTTAGGGTTAGTTGT 59.113 43.478 0.00 0.00 34.45 3.32
8304 11120 4.023450 GCACCAAAGTTAGGGTTAGTTGTC 60.023 45.833 0.00 0.00 34.45 3.18
8305 11121 4.517832 CACCAAAGTTAGGGTTAGTTGTCC 59.482 45.833 0.00 0.00 34.45 4.02
8306 11122 3.749609 CCAAAGTTAGGGTTAGTTGTCCG 59.250 47.826 0.00 0.00 0.00 4.79
8307 11123 2.756840 AGTTAGGGTTAGTTGTCCGC 57.243 50.000 0.00 0.00 0.00 5.54
8308 11124 1.067354 AGTTAGGGTTAGTTGTCCGCG 60.067 52.381 0.00 0.00 0.00 6.46
8309 11125 1.067635 GTTAGGGTTAGTTGTCCGCGA 60.068 52.381 8.23 0.00 0.00 5.87
8310 11126 0.813184 TAGGGTTAGTTGTCCGCGAG 59.187 55.000 8.23 0.00 0.00 5.03
8311 11127 2.098831 GGGTTAGTTGTCCGCGAGC 61.099 63.158 8.23 0.00 0.00 5.03
8312 11128 1.373748 GGTTAGTTGTCCGCGAGCA 60.374 57.895 8.23 2.39 0.00 4.26
8313 11129 0.947180 GGTTAGTTGTCCGCGAGCAA 60.947 55.000 8.23 9.64 0.00 3.91
8314 11130 0.163146 GTTAGTTGTCCGCGAGCAAC 59.837 55.000 26.64 26.64 43.63 4.17
8316 11132 3.330275 GTTGTCCGCGAGCAACTT 58.670 55.556 26.65 0.00 41.05 2.66
8317 11133 1.647084 GTTGTCCGCGAGCAACTTT 59.353 52.632 26.65 0.00 41.05 2.66
8318 11134 0.028902 GTTGTCCGCGAGCAACTTTT 59.971 50.000 26.65 0.00 41.05 2.27
8319 11135 0.028770 TTGTCCGCGAGCAACTTTTG 59.971 50.000 8.23 0.00 0.00 2.44
8320 11136 1.092921 TGTCCGCGAGCAACTTTTGT 61.093 50.000 8.23 0.00 0.00 2.83
8321 11137 0.384353 GTCCGCGAGCAACTTTTGTC 60.384 55.000 8.23 0.00 0.00 3.18
8322 11138 0.812014 TCCGCGAGCAACTTTTGTCA 60.812 50.000 8.23 0.00 0.00 3.58
8323 11139 0.384725 CCGCGAGCAACTTTTGTCAG 60.385 55.000 8.23 0.00 0.00 3.51
8324 11140 0.304705 CGCGAGCAACTTTTGTCAGT 59.695 50.000 0.00 0.00 0.00 3.41
8325 11141 1.268032 CGCGAGCAACTTTTGTCAGTT 60.268 47.619 0.00 0.00 37.49 3.16
8326 11142 2.376032 GCGAGCAACTTTTGTCAGTTC 58.624 47.619 0.00 0.00 34.60 3.01
8327 11143 2.854805 GCGAGCAACTTTTGTCAGTTCC 60.855 50.000 0.00 0.00 34.60 3.62
8328 11144 2.614057 CGAGCAACTTTTGTCAGTTCCT 59.386 45.455 0.00 0.00 34.60 3.36
8329 11145 3.807622 CGAGCAACTTTTGTCAGTTCCTA 59.192 43.478 0.00 0.00 34.60 2.94
8330 11146 4.452455 CGAGCAACTTTTGTCAGTTCCTAT 59.548 41.667 0.00 0.00 34.60 2.57
8331 11147 5.637810 CGAGCAACTTTTGTCAGTTCCTATA 59.362 40.000 0.00 0.00 34.60 1.31
8332 11148 6.147164 CGAGCAACTTTTGTCAGTTCCTATAA 59.853 38.462 0.00 0.00 34.60 0.98
8333 11149 7.307751 CGAGCAACTTTTGTCAGTTCCTATAAA 60.308 37.037 0.00 0.00 34.60 1.40
8334 11150 7.875971 AGCAACTTTTGTCAGTTCCTATAAAG 58.124 34.615 0.00 0.00 34.60 1.85
8335 11151 7.502561 AGCAACTTTTGTCAGTTCCTATAAAGT 59.497 33.333 0.00 0.00 34.60 2.66
8336 11152 8.135529 GCAACTTTTGTCAGTTCCTATAAAGTT 58.864 33.333 0.00 0.00 42.03 2.66
8337 11153 9.665264 CAACTTTTGTCAGTTCCTATAAAGTTC 57.335 33.333 0.00 0.00 40.40 3.01
8338 11154 9.628500 AACTTTTGTCAGTTCCTATAAAGTTCT 57.372 29.630 0.00 0.00 39.01 3.01
8339 11155 9.628500 ACTTTTGTCAGTTCCTATAAAGTTCTT 57.372 29.630 0.00 0.00 32.24 2.52
8341 11157 8.617290 TTTGTCAGTTCCTATAAAGTTCTTCC 57.383 34.615 0.00 0.00 0.00 3.46
8342 11158 7.554959 TGTCAGTTCCTATAAAGTTCTTCCT 57.445 36.000 0.00 0.00 0.00 3.36
8343 11159 7.386851 TGTCAGTTCCTATAAAGTTCTTCCTG 58.613 38.462 0.00 0.00 0.00 3.86
8344 11160 7.016268 TGTCAGTTCCTATAAAGTTCTTCCTGT 59.984 37.037 0.00 0.00 0.00 4.00
8345 11161 8.529476 GTCAGTTCCTATAAAGTTCTTCCTGTA 58.471 37.037 0.00 0.00 0.00 2.74
8346 11162 9.096823 TCAGTTCCTATAAAGTTCTTCCTGTAA 57.903 33.333 0.00 0.00 0.00 2.41
8347 11163 9.720769 CAGTTCCTATAAAGTTCTTCCTGTAAA 57.279 33.333 0.00 0.00 0.00 2.01
8379 11197 3.317149 TGAGGTAATATCACCGGAAGTCG 59.683 47.826 9.46 0.00 43.84 4.18
8474 11292 0.179225 GCGTGCAAATACGGTCACAG 60.179 55.000 0.00 0.00 43.87 3.66
8732 11578 7.505585 ACAAATTAAGGACACAAGATCCTCAAA 59.494 33.333 0.00 0.00 46.36 2.69
8773 11619 2.555227 CCACTCTAGCCAACCAACCAAT 60.555 50.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 295 2.863401 TGGGACTCGACAACATATCG 57.137 50.000 0.00 0.00 41.00 2.92
281 801 0.320683 CACTTGCACGGATCACCTCA 60.321 55.000 0.00 0.00 0.00 3.86
284 804 1.463444 GTAACACTTGCACGGATCACC 59.537 52.381 0.00 0.00 0.00 4.02
290 810 3.003275 ACTCAAATGTAACACTTGCACGG 59.997 43.478 0.00 0.00 0.00 4.94
326 846 4.922206 AGCATTTTTGGATGGAGTACTGA 58.078 39.130 0.00 0.00 0.00 3.41
327 847 6.732154 CATAGCATTTTTGGATGGAGTACTG 58.268 40.000 0.00 0.00 0.00 2.74
424 944 1.662446 GCATGTGCACAACAGCCAC 60.662 57.895 25.72 4.54 43.64 5.01
498 1018 0.183492 ACAAGGAGGCAGTGCAAAGA 59.817 50.000 18.61 0.00 0.00 2.52
504 1024 1.374758 GACCGACAAGGAGGCAGTG 60.375 63.158 0.00 0.00 45.00 3.66
506 1026 2.266055 GGACCGACAAGGAGGCAG 59.734 66.667 0.00 0.00 45.00 4.85
530 1050 0.928229 GAATGTTACCTGTAGCGCCG 59.072 55.000 2.29 0.00 0.00 6.46
534 1054 4.575885 TGGTCAAGAATGTTACCTGTAGC 58.424 43.478 0.00 0.00 32.99 3.58
535 1055 6.655003 ACAATGGTCAAGAATGTTACCTGTAG 59.345 38.462 0.00 0.00 32.99 2.74
557 1077 5.826643 AGAGGCCTTCCATTATTTACACAA 58.173 37.500 6.77 0.00 33.74 3.33
558 1078 5.450818 AGAGGCCTTCCATTATTTACACA 57.549 39.130 6.77 0.00 33.74 3.72
587 1107 1.331756 GTGAATGCCATCCTGTTAGCG 59.668 52.381 0.00 0.00 0.00 4.26
616 1136 9.243105 AGAAATTAAAGCTGGCTACTCAAAATA 57.757 29.630 0.00 0.00 0.00 1.40
792 2820 0.252012 CCAATGTAAACCCCAGCCCA 60.252 55.000 0.00 0.00 0.00 5.36
1008 3369 1.022982 GGTTTCGATTCCCCGGTGTC 61.023 60.000 0.00 0.00 0.00 3.67
1109 3476 2.943653 CCGACGGTTGAACTTGGC 59.056 61.111 5.48 0.00 0.00 4.52
1144 3511 4.351938 TCACTCGGTTCACGGCGG 62.352 66.667 13.24 0.00 44.45 6.13
1259 3626 1.016130 CAAGCGCAGTGGGAGTAGTG 61.016 60.000 11.47 0.00 0.00 2.74
1285 3652 5.541868 CGGCCATATATCTCCCAGAAGATAT 59.458 44.000 2.24 10.36 46.11 1.63
1339 3706 6.203723 CCAAAGATCTGGAATTTATCGGAGTC 59.796 42.308 0.00 0.00 38.96 3.36
1340 3707 6.058183 CCAAAGATCTGGAATTTATCGGAGT 58.942 40.000 0.00 0.00 38.96 3.85
1341 3708 6.291377 TCCAAAGATCTGGAATTTATCGGAG 58.709 40.000 0.00 0.00 42.69 4.63
1342 3709 6.247229 TCCAAAGATCTGGAATTTATCGGA 57.753 37.500 0.00 0.00 42.69 4.55
1367 3734 1.277273 ACGCAGTACTAAAGGGTTCCC 59.723 52.381 0.00 0.00 41.94 3.97
1368 3735 2.344025 CACGCAGTACTAAAGGGTTCC 58.656 52.381 0.00 0.00 41.61 3.62
1369 3736 1.730612 GCACGCAGTACTAAAGGGTTC 59.269 52.381 0.00 0.00 41.61 3.62
1373 3740 1.359848 CCAGCACGCAGTACTAAAGG 58.640 55.000 0.00 0.00 41.61 3.11
1374 3741 0.721718 GCCAGCACGCAGTACTAAAG 59.278 55.000 0.00 0.00 41.61 1.85
1377 3744 0.389817 CAAGCCAGCACGCAGTACTA 60.390 55.000 0.00 0.00 41.61 1.82
1378 3745 1.669115 CAAGCCAGCACGCAGTACT 60.669 57.895 0.00 0.00 41.61 2.73
1421 3793 0.731174 CGGCAAATTAACACGGCACC 60.731 55.000 0.00 0.00 0.00 5.01
1422 3794 0.731174 CCGGCAAATTAACACGGCAC 60.731 55.000 0.00 0.00 37.93 5.01
1442 3814 2.679837 AGCCAAGATTACGCATGTTCTG 59.320 45.455 0.00 0.00 0.00 3.02
1447 3819 0.316442 CGCAGCCAAGATTACGCATG 60.316 55.000 0.00 0.00 0.00 4.06
1465 3837 2.186076 GACAGATAGCGGACAAACTCG 58.814 52.381 0.00 0.00 0.00 4.18
1483 3855 3.328637 TCACTAAACCTAAACCCCAGGAC 59.671 47.826 0.00 0.00 36.61 3.85
1485 3857 3.872630 GCTCACTAAACCTAAACCCCAGG 60.873 52.174 0.00 0.00 39.25 4.45
1591 4029 0.235926 GACAAACTTGCAGCGGAGAC 59.764 55.000 2.79 0.00 0.00 3.36
1618 4056 3.370953 CCCTCTCACTAAACCCCAGAATG 60.371 52.174 0.00 0.00 0.00 2.67
1619 4057 2.846827 CCCTCTCACTAAACCCCAGAAT 59.153 50.000 0.00 0.00 0.00 2.40
1686 4124 2.455032 CGAGACCGAGCTGTAAAGATG 58.545 52.381 0.00 0.00 38.22 2.90
1722 4160 3.053896 GTGAACCCGGAAAGGCGG 61.054 66.667 0.73 0.00 39.21 6.13
1725 4163 0.949105 CTCACGTGAACCCGGAAAGG 60.949 60.000 20.49 0.00 40.63 3.11
1726 4164 0.032952 TCTCACGTGAACCCGGAAAG 59.967 55.000 20.49 4.49 0.00 2.62
1730 4168 0.815734 ACTATCTCACGTGAACCCGG 59.184 55.000 20.49 7.58 0.00 5.73
1731 4169 2.163815 AGAACTATCTCACGTGAACCCG 59.836 50.000 20.49 7.98 0.00 5.28
1732 4170 3.870633 AGAACTATCTCACGTGAACCC 57.129 47.619 20.49 4.87 0.00 4.11
1733 4171 6.132791 TCATAGAACTATCTCACGTGAACC 57.867 41.667 20.49 3.86 37.10 3.62
1734 4172 5.683743 GCTCATAGAACTATCTCACGTGAAC 59.316 44.000 20.49 5.36 37.10 3.18
1735 4173 5.590663 AGCTCATAGAACTATCTCACGTGAA 59.409 40.000 20.49 11.00 37.10 3.18
1736 4174 5.008118 CAGCTCATAGAACTATCTCACGTGA 59.992 44.000 18.88 18.88 37.10 4.35
1738 4176 4.261405 GCAGCTCATAGAACTATCTCACGT 60.261 45.833 0.00 0.00 37.10 4.49
1972 4417 1.734163 ACTACGCATTACAGGCAACC 58.266 50.000 0.00 0.00 37.17 3.77
2046 4491 4.696479 AATCCAGGCACTTATACCTCAG 57.304 45.455 0.00 0.00 34.60 3.35
2063 4508 3.259123 AGAACTGTTCATGGGCAAAATCC 59.741 43.478 21.50 0.00 0.00 3.01
2110 4555 6.007703 CACCAAGGGGAACTGATAAACTAAA 58.992 40.000 0.00 0.00 38.05 1.85
2132 4577 1.196808 CAACTGACCAACATACGCCAC 59.803 52.381 0.00 0.00 0.00 5.01
2137 4582 2.504367 ACTGCCAACTGACCAACATAC 58.496 47.619 0.00 0.00 0.00 2.39
2172 4617 3.975312 TGGGTCTAAACAACACTAAGGGA 59.025 43.478 0.00 0.00 0.00 4.20
2305 4750 4.487714 AGTTGTCCTGAGTTGACAGAAA 57.512 40.909 0.00 0.00 43.14 2.52
2407 4852 3.057386 TCATGCTGGTGTGCAAACAATAG 60.057 43.478 9.76 5.16 46.61 1.73
2452 4897 6.849085 TTATTAGAAGGATGGCAAGCAAAA 57.151 33.333 0.00 0.00 0.00 2.44
2483 4928 9.917129 TTGGCATTTATATATCATGCAGAAAAG 57.083 29.630 22.39 3.60 44.37 2.27
2707 5333 8.689972 CCTTTGGTTGAAGATTAAGCATTATCT 58.310 33.333 0.00 0.00 35.71 1.98
2801 5428 1.475392 CCCAAGTACCAAACGACCACA 60.475 52.381 0.00 0.00 0.00 4.17
2855 5483 5.825593 TTGTCTTCCAGTGATTTCTAGGT 57.174 39.130 0.00 0.00 0.00 3.08
3222 5856 5.220835 CGGATGTATGAAGCAGCAATAACAA 60.221 40.000 0.00 0.00 0.00 2.83
3239 5873 3.386768 GCTTCCTATCAAGCGGATGTA 57.613 47.619 4.42 0.00 39.55 2.29
3386 6020 3.617263 ACTCGTTCAGAACAAGTCACAAC 59.383 43.478 13.82 0.00 0.00 3.32
3469 6103 3.446442 AACAGCCAGACAGGAAATGAT 57.554 42.857 0.00 0.00 41.22 2.45
3649 6306 5.597806 ACAAACACACTGAAAGAGACGATA 58.402 37.500 0.00 0.00 37.43 2.92
3653 6310 7.303634 TCTTTACAAACACACTGAAAGAGAC 57.696 36.000 0.00 0.00 37.43 3.36
3669 6326 5.007682 GCTTGATACAGGGGTTCTTTACAA 58.992 41.667 0.00 0.00 0.00 2.41
3799 6458 1.469767 GGGGCATTGATTTTCACTCGC 60.470 52.381 0.00 0.00 0.00 5.03
4021 6740 8.456471 CAACAATATTCTGATGCTCTCTGAAAA 58.544 33.333 11.20 0.00 42.77 2.29
4112 6831 2.870035 GCAACACCAGCCATTTTAACCC 60.870 50.000 0.00 0.00 0.00 4.11
5366 8112 2.423947 GCCCACCATCTTCATGAGGAAT 60.424 50.000 11.98 0.00 34.32 3.01
5629 8375 1.140589 AGCATGAGAAGCGGACTCG 59.859 57.895 0.00 0.00 37.22 4.18
5782 8528 5.359756 TCATGGAGATATGGACAAGTTTCG 58.640 41.667 0.00 0.00 0.00 3.46
5829 8575 0.179026 CTCATCAGATGCACCTGGGG 60.179 60.000 8.61 0.43 34.99 4.96
6071 8817 1.464734 TTGTTTCGCCCTTGTGAACA 58.535 45.000 0.00 0.00 40.54 3.18
6126 8872 3.820467 TGCACTTGTTTGGATAGGACTTG 59.180 43.478 0.00 0.00 0.00 3.16
6219 8965 5.510179 GCAGCATTTATCCCAGTTTGCATAT 60.510 40.000 0.00 0.00 32.66 1.78
6236 8982 4.646492 CCCACCTAAAAGATTAGCAGCATT 59.354 41.667 0.00 0.00 37.74 3.56
6311 9057 0.038166 ACTGGATGAATTGGTGCCGT 59.962 50.000 0.00 0.00 0.00 5.68
6312 9058 0.734889 GACTGGATGAATTGGTGCCG 59.265 55.000 0.00 0.00 0.00 5.69
6351 9097 8.793592 GGATATTAAAAGGGAACATGGATGTAC 58.206 37.037 0.00 0.00 40.80 2.90
6364 9110 6.713762 TCATGCTGTTGGATATTAAAAGGG 57.286 37.500 0.00 0.00 0.00 3.95
6609 9385 4.090057 GCGGAACTTGACCAGCGC 62.090 66.667 0.00 0.00 0.00 5.92
6628 9404 2.750237 AAAGGCGTTGGGCGATCC 60.750 61.111 0.00 0.00 44.92 3.36
7416 10225 2.708861 TCTTTCCAGGTAGGTTTGAGCA 59.291 45.455 0.00 0.00 39.02 4.26
7570 10379 5.395990 GGGCTATACCTGTACAAGTTTGCTA 60.396 44.000 1.72 0.00 39.10 3.49
7624 10433 2.627699 CAACATAACAAGGTGCCAGGTT 59.372 45.455 0.00 3.69 0.00 3.50
7634 10443 7.021196 CCAAACCGATTAGTCAACATAACAAG 58.979 38.462 0.00 0.00 0.00 3.16
7637 10446 6.490566 ACCAAACCGATTAGTCAACATAAC 57.509 37.500 0.00 0.00 0.00 1.89
7644 10453 4.035792 CACACAAACCAAACCGATTAGTCA 59.964 41.667 0.00 0.00 0.00 3.41
7646 10455 3.316868 CCACACAAACCAAACCGATTAGT 59.683 43.478 0.00 0.00 0.00 2.24
7651 10463 0.965866 TGCCACACAAACCAAACCGA 60.966 50.000 0.00 0.00 0.00 4.69
7674 10486 4.380531 CCTTGACATACTTGCCGACATAT 58.619 43.478 0.00 0.00 0.00 1.78
7899 10711 6.593807 ACCTATATCTATCTACCGCTACAGG 58.406 44.000 0.00 0.00 37.30 4.00
7983 10795 3.057315 AGTTCTACATGCATGCAAACACC 60.057 43.478 26.68 9.54 0.00 4.16
8048 10864 8.560355 AAAAGCTAAAGAAACAAACAACCAAT 57.440 26.923 0.00 0.00 0.00 3.16
8083 10899 2.096496 CGCCAGGCATTACTTCAGAAAG 59.904 50.000 13.30 0.00 38.54 2.62
8084 10900 2.083774 CGCCAGGCATTACTTCAGAAA 58.916 47.619 13.30 0.00 0.00 2.52
8085 10901 1.003118 ACGCCAGGCATTACTTCAGAA 59.997 47.619 13.30 0.00 0.00 3.02
8086 10902 0.613260 ACGCCAGGCATTACTTCAGA 59.387 50.000 13.30 0.00 0.00 3.27
8087 10903 0.729116 CACGCCAGGCATTACTTCAG 59.271 55.000 13.30 0.00 0.00 3.02
8088 10904 0.036164 ACACGCCAGGCATTACTTCA 59.964 50.000 13.30 0.00 0.00 3.02
8089 10905 1.135689 CAACACGCCAGGCATTACTTC 60.136 52.381 13.30 0.00 0.00 3.01
8090 10906 0.881118 CAACACGCCAGGCATTACTT 59.119 50.000 13.30 0.00 0.00 2.24
8091 10907 0.036164 TCAACACGCCAGGCATTACT 59.964 50.000 13.30 0.00 0.00 2.24
8092 10908 0.447801 CTCAACACGCCAGGCATTAC 59.552 55.000 13.30 0.00 0.00 1.89
8093 10909 0.676466 CCTCAACACGCCAGGCATTA 60.676 55.000 13.30 0.00 0.00 1.90
8094 10910 1.973281 CCTCAACACGCCAGGCATT 60.973 57.895 13.30 0.00 0.00 3.56
8095 10911 2.360350 CCTCAACACGCCAGGCAT 60.360 61.111 13.30 0.00 0.00 4.40
8096 10912 3.535629 CTCCTCAACACGCCAGGCA 62.536 63.158 13.30 0.00 0.00 4.75
8097 10913 2.731691 TTCTCCTCAACACGCCAGGC 62.732 60.000 0.00 0.00 0.00 4.85
8098 10914 0.250295 TTTCTCCTCAACACGCCAGG 60.250 55.000 0.00 0.00 0.00 4.45
8099 10915 1.151668 CTTTCTCCTCAACACGCCAG 58.848 55.000 0.00 0.00 0.00 4.85
8100 10916 0.884704 GCTTTCTCCTCAACACGCCA 60.885 55.000 0.00 0.00 0.00 5.69
8101 10917 0.884704 TGCTTTCTCCTCAACACGCC 60.885 55.000 0.00 0.00 0.00 5.68
8102 10918 0.514691 CTGCTTTCTCCTCAACACGC 59.485 55.000 0.00 0.00 0.00 5.34
8103 10919 0.514691 GCTGCTTTCTCCTCAACACG 59.485 55.000 0.00 0.00 0.00 4.49
8104 10920 1.889545 AGCTGCTTTCTCCTCAACAC 58.110 50.000 0.00 0.00 0.00 3.32
8105 10921 3.261643 TCATAGCTGCTTTCTCCTCAACA 59.738 43.478 7.79 0.00 0.00 3.33
8106 10922 3.866651 TCATAGCTGCTTTCTCCTCAAC 58.133 45.455 7.79 0.00 0.00 3.18
8107 10923 3.681034 GCTCATAGCTGCTTTCTCCTCAA 60.681 47.826 7.79 0.00 38.45 3.02
8108 10924 2.158986 GCTCATAGCTGCTTTCTCCTCA 60.159 50.000 7.79 0.00 38.45 3.86
8109 10925 2.482864 GCTCATAGCTGCTTTCTCCTC 58.517 52.381 7.79 0.00 38.45 3.71
8110 10926 1.202510 CGCTCATAGCTGCTTTCTCCT 60.203 52.381 7.79 0.00 39.60 3.69
8111 10927 1.216122 CGCTCATAGCTGCTTTCTCC 58.784 55.000 7.79 0.00 39.60 3.71
8112 10928 1.216122 CCGCTCATAGCTGCTTTCTC 58.784 55.000 7.79 0.00 39.60 2.87
8113 10929 0.539051 ACCGCTCATAGCTGCTTTCT 59.461 50.000 7.79 0.00 39.60 2.52
8114 10930 2.131183 CTACCGCTCATAGCTGCTTTC 58.869 52.381 7.79 0.00 39.60 2.62
8115 10931 1.808133 GCTACCGCTCATAGCTGCTTT 60.808 52.381 7.79 0.00 41.59 3.51
8116 10932 0.249657 GCTACCGCTCATAGCTGCTT 60.250 55.000 7.79 0.00 41.59 3.91
8117 10933 1.365633 GCTACCGCTCATAGCTGCT 59.634 57.895 7.57 7.57 41.59 4.24
8118 10934 1.666234 GGCTACCGCTCATAGCTGC 60.666 63.158 0.00 0.00 43.83 5.25
8119 10935 0.598680 GTGGCTACCGCTCATAGCTG 60.599 60.000 0.00 0.00 43.83 4.24
8120 10936 1.043116 TGTGGCTACCGCTCATAGCT 61.043 55.000 0.00 0.00 43.83 3.32
8121 10937 0.034059 ATGTGGCTACCGCTCATAGC 59.966 55.000 0.00 2.94 43.66 2.97
8122 10938 2.558795 AGTATGTGGCTACCGCTCATAG 59.441 50.000 0.00 0.00 35.48 2.23
8123 10939 2.296190 CAGTATGTGGCTACCGCTCATA 59.704 50.000 0.00 0.00 34.70 2.15
8124 10940 1.069204 CAGTATGTGGCTACCGCTCAT 59.931 52.381 0.00 0.00 34.70 2.90
8125 10941 0.459899 CAGTATGTGGCTACCGCTCA 59.540 55.000 0.00 0.00 34.70 4.26
8126 10942 3.274393 CAGTATGTGGCTACCGCTC 57.726 57.895 0.00 0.00 34.70 5.03
8138 10954 6.095300 AGACTCTCATTCTCAGTGACAGTATG 59.905 42.308 0.00 0.00 46.00 2.39
8139 10955 6.186957 AGACTCTCATTCTCAGTGACAGTAT 58.813 40.000 0.00 0.00 27.15 2.12
8140 10956 5.565509 AGACTCTCATTCTCAGTGACAGTA 58.434 41.667 0.00 0.00 27.15 2.74
8141 10957 4.406456 AGACTCTCATTCTCAGTGACAGT 58.594 43.478 0.00 0.00 29.22 3.55
8142 10958 4.701651 AGAGACTCTCATTCTCAGTGACAG 59.298 45.833 8.80 0.00 41.84 3.51
8143 10959 4.661222 AGAGACTCTCATTCTCAGTGACA 58.339 43.478 8.80 0.00 41.84 3.58
8144 10960 5.643379 AAGAGACTCTCATTCTCAGTGAC 57.357 43.478 5.20 0.00 41.84 3.67
8145 10961 5.047448 CCAAAGAGACTCTCATTCTCAGTGA 60.047 44.000 5.20 0.00 41.84 3.41
8146 10962 5.170021 CCAAAGAGACTCTCATTCTCAGTG 58.830 45.833 5.20 0.00 41.84 3.66
8147 10963 4.837860 ACCAAAGAGACTCTCATTCTCAGT 59.162 41.667 5.20 0.00 41.84 3.41
8148 10964 5.404466 ACCAAAGAGACTCTCATTCTCAG 57.596 43.478 5.20 0.00 41.84 3.35
8149 10965 6.918067 TTACCAAAGAGACTCTCATTCTCA 57.082 37.500 5.20 0.00 41.84 3.27
8150 10966 7.279758 CCATTTACCAAAGAGACTCTCATTCTC 59.720 40.741 5.20 0.00 39.99 2.87
8151 10967 7.038017 TCCATTTACCAAAGAGACTCTCATTCT 60.038 37.037 5.20 0.00 32.06 2.40
8152 10968 7.106239 TCCATTTACCAAAGAGACTCTCATTC 58.894 38.462 5.20 0.00 32.06 2.67
8153 10969 7.020827 TCCATTTACCAAAGAGACTCTCATT 57.979 36.000 5.20 0.00 32.06 2.57
8154 10970 6.627087 TCCATTTACCAAAGAGACTCTCAT 57.373 37.500 5.20 0.00 32.06 2.90
8155 10971 6.043243 ACTTCCATTTACCAAAGAGACTCTCA 59.957 38.462 5.20 0.00 32.06 3.27
8156 10972 6.468543 ACTTCCATTTACCAAAGAGACTCTC 58.531 40.000 5.20 0.00 0.00 3.20
8157 10973 6.441088 ACTTCCATTTACCAAAGAGACTCT 57.559 37.500 0.00 0.00 0.00 3.24
8158 10974 8.794335 ATAACTTCCATTTACCAAAGAGACTC 57.206 34.615 0.00 0.00 0.00 3.36
8159 10975 7.829706 GGATAACTTCCATTTACCAAAGAGACT 59.170 37.037 0.00 0.00 44.74 3.24
8160 10976 7.986562 GGATAACTTCCATTTACCAAAGAGAC 58.013 38.462 0.00 0.00 44.74 3.36
8175 10991 5.755861 GCTACACTGAATCTGGATAACTTCC 59.244 44.000 0.00 0.00 45.69 3.46
8176 10992 6.341316 TGCTACACTGAATCTGGATAACTTC 58.659 40.000 0.00 0.00 0.00 3.01
8177 10993 6.299805 TGCTACACTGAATCTGGATAACTT 57.700 37.500 0.00 0.00 0.00 2.66
8178 10994 5.939764 TGCTACACTGAATCTGGATAACT 57.060 39.130 0.00 0.00 0.00 2.24
8179 10995 7.383572 CAGTATGCTACACTGAATCTGGATAAC 59.616 40.741 6.99 0.00 45.10 1.89
8180 10996 7.069950 ACAGTATGCTACACTGAATCTGGATAA 59.930 37.037 16.44 0.00 45.10 1.75
8181 10997 6.551227 ACAGTATGCTACACTGAATCTGGATA 59.449 38.462 16.44 0.00 45.10 2.59
8182 10998 5.365025 ACAGTATGCTACACTGAATCTGGAT 59.635 40.000 16.44 0.00 45.10 3.41
8183 10999 4.711846 ACAGTATGCTACACTGAATCTGGA 59.288 41.667 16.44 0.00 45.10 3.86
8184 11000 5.016051 ACAGTATGCTACACTGAATCTGG 57.984 43.478 16.44 0.00 45.10 3.86
8185 11001 5.747675 CAGACAGTATGCTACACTGAATCTG 59.252 44.000 16.44 14.86 45.10 2.90
8186 11002 5.654209 TCAGACAGTATGCTACACTGAATCT 59.346 40.000 16.44 9.02 45.10 2.40
8187 11003 5.895928 TCAGACAGTATGCTACACTGAATC 58.104 41.667 16.44 7.36 45.10 2.52
8188 11004 5.921962 TCAGACAGTATGCTACACTGAAT 57.078 39.130 16.44 5.02 45.10 2.57
8189 11005 5.921962 ATCAGACAGTATGCTACACTGAA 57.078 39.130 16.44 3.61 45.10 3.02
8190 11006 6.772716 TCATATCAGACAGTATGCTACACTGA 59.227 38.462 16.44 12.94 45.10 3.41
8192 11008 7.773489 ATCATATCAGACAGTATGCTACACT 57.227 36.000 0.00 0.00 42.53 3.55
8202 11018 9.919416 AGACTGCTATATATCATATCAGACAGT 57.081 33.333 11.74 11.74 36.28 3.55
8205 11021 9.462174 GCAAGACTGCTATATATCATATCAGAC 57.538 37.037 2.97 0.00 45.74 3.51
8222 11038 2.285834 GCATATGTGTACGCAAGACTGC 60.286 50.000 14.03 14.87 45.75 4.40
8223 11039 3.000623 CAGCATATGTGTACGCAAGACTG 59.999 47.826 14.03 13.96 43.62 3.51
8224 11040 3.190079 CAGCATATGTGTACGCAAGACT 58.810 45.455 14.03 6.04 43.62 3.24
8225 11041 2.285834 GCAGCATATGTGTACGCAAGAC 60.286 50.000 14.03 3.75 43.62 3.01
8226 11042 1.933181 GCAGCATATGTGTACGCAAGA 59.067 47.619 14.03 5.00 43.62 3.02
8228 11044 1.665169 CTGCAGCATATGTGTACGCAA 59.335 47.619 14.03 3.58 0.00 4.85
8229 11045 1.289276 CTGCAGCATATGTGTACGCA 58.711 50.000 12.26 12.26 0.00 5.24
8230 11046 1.290203 ACTGCAGCATATGTGTACGC 58.710 50.000 15.27 0.00 0.00 4.42
8231 11047 2.929398 TGAACTGCAGCATATGTGTACG 59.071 45.455 15.27 0.00 0.00 3.67
8232 11048 4.526970 CTGAACTGCAGCATATGTGTAC 57.473 45.455 15.27 0.00 37.90 2.90
8243 11059 1.797046 CTGCACTGTACTGAACTGCAG 59.203 52.381 21.22 21.22 45.42 4.41
8244 11060 1.541015 CCTGCACTGTACTGAACTGCA 60.541 52.381 13.41 13.41 37.04 4.41
8245 11061 1.151668 CCTGCACTGTACTGAACTGC 58.848 55.000 6.77 6.80 31.57 4.40
8246 11062 1.151668 GCCTGCACTGTACTGAACTG 58.848 55.000 6.77 2.52 0.00 3.16
8247 11063 1.051812 AGCCTGCACTGTACTGAACT 58.948 50.000 6.77 0.00 0.00 3.01
8248 11064 1.151668 CAGCCTGCACTGTACTGAAC 58.848 55.000 6.77 0.00 32.78 3.18
8249 11065 3.612517 CAGCCTGCACTGTACTGAA 57.387 52.632 6.77 0.00 32.78 3.02
8256 11072 2.674852 CAACATACTACAGCCTGCACTG 59.325 50.000 2.91 2.91 43.59 3.66
8257 11073 2.936993 GCAACATACTACAGCCTGCACT 60.937 50.000 0.00 0.00 0.00 4.40
8258 11074 1.398390 GCAACATACTACAGCCTGCAC 59.602 52.381 0.00 0.00 0.00 4.57
8259 11075 1.278985 AGCAACATACTACAGCCTGCA 59.721 47.619 0.00 0.00 0.00 4.41
8260 11076 2.029838 AGCAACATACTACAGCCTGC 57.970 50.000 0.00 0.00 0.00 4.85
8261 11077 2.096496 GCAAGCAACATACTACAGCCTG 59.904 50.000 0.00 0.00 0.00 4.85
8262 11078 2.290260 TGCAAGCAACATACTACAGCCT 60.290 45.455 0.00 0.00 0.00 4.58
8263 11079 2.083774 TGCAAGCAACATACTACAGCC 58.916 47.619 0.00 0.00 0.00 4.85
8264 11080 2.159517 GGTGCAAGCAACATACTACAGC 60.160 50.000 5.00 0.00 33.07 4.40
8265 11081 3.073678 TGGTGCAAGCAACATACTACAG 58.926 45.455 9.00 0.00 44.10 2.74
8266 11082 3.133141 TGGTGCAAGCAACATACTACA 57.867 42.857 9.00 0.00 44.10 2.74
8276 11092 1.327303 CCCTAACTTTGGTGCAAGCA 58.673 50.000 0.00 0.00 46.28 3.91
8277 11093 1.328279 ACCCTAACTTTGGTGCAAGC 58.672 50.000 0.00 0.00 32.36 4.01
8278 11094 4.142038 ACTAACCCTAACTTTGGTGCAAG 58.858 43.478 0.00 0.00 34.34 4.01
8279 11095 4.173290 ACTAACCCTAACTTTGGTGCAA 57.827 40.909 0.00 0.00 34.34 4.08
8280 11096 3.868619 ACTAACCCTAACTTTGGTGCA 57.131 42.857 0.00 0.00 34.34 4.57
8281 11097 3.887110 ACAACTAACCCTAACTTTGGTGC 59.113 43.478 0.00 0.00 34.34 5.01
8282 11098 4.517832 GGACAACTAACCCTAACTTTGGTG 59.482 45.833 0.00 0.00 34.34 4.17
8283 11099 4.722220 GGACAACTAACCCTAACTTTGGT 58.278 43.478 0.00 0.00 36.06 3.67
8284 11100 3.749609 CGGACAACTAACCCTAACTTTGG 59.250 47.826 0.00 0.00 0.00 3.28
8285 11101 3.187842 GCGGACAACTAACCCTAACTTTG 59.812 47.826 0.00 0.00 0.00 2.77
8286 11102 3.405831 GCGGACAACTAACCCTAACTTT 58.594 45.455 0.00 0.00 0.00 2.66
8287 11103 2.611224 CGCGGACAACTAACCCTAACTT 60.611 50.000 0.00 0.00 0.00 2.66
8288 11104 1.067354 CGCGGACAACTAACCCTAACT 60.067 52.381 0.00 0.00 0.00 2.24
8289 11105 1.067635 TCGCGGACAACTAACCCTAAC 60.068 52.381 6.13 0.00 0.00 2.34
8290 11106 1.203052 CTCGCGGACAACTAACCCTAA 59.797 52.381 6.13 0.00 0.00 2.69
8291 11107 0.813184 CTCGCGGACAACTAACCCTA 59.187 55.000 6.13 0.00 0.00 3.53
8292 11108 1.590147 CTCGCGGACAACTAACCCT 59.410 57.895 6.13 0.00 0.00 4.34
8293 11109 2.098831 GCTCGCGGACAACTAACCC 61.099 63.158 6.13 0.00 0.00 4.11
8294 11110 0.947180 TTGCTCGCGGACAACTAACC 60.947 55.000 6.13 0.00 0.00 2.85
8295 11111 0.163146 GTTGCTCGCGGACAACTAAC 59.837 55.000 27.03 12.33 42.27 2.34
8296 11112 2.524300 GTTGCTCGCGGACAACTAA 58.476 52.632 27.03 5.62 42.27 2.24
8297 11113 4.255126 GTTGCTCGCGGACAACTA 57.745 55.556 27.03 3.66 42.27 2.24
8299 11115 0.028902 AAAAGTTGCTCGCGGACAAC 59.971 50.000 27.03 27.03 45.15 3.32
8300 11116 0.028770 CAAAAGTTGCTCGCGGACAA 59.971 50.000 6.13 8.58 0.00 3.18
8301 11117 1.092921 ACAAAAGTTGCTCGCGGACA 61.093 50.000 6.13 1.16 0.00 4.02
8302 11118 0.384353 GACAAAAGTTGCTCGCGGAC 60.384 55.000 6.13 0.00 0.00 4.79
8303 11119 0.812014 TGACAAAAGTTGCTCGCGGA 60.812 50.000 6.13 0.00 0.00 5.54
8304 11120 0.384725 CTGACAAAAGTTGCTCGCGG 60.385 55.000 6.13 0.00 0.00 6.46
8305 11121 0.304705 ACTGACAAAAGTTGCTCGCG 59.695 50.000 0.00 0.00 0.00 5.87
8306 11122 2.376032 GAACTGACAAAAGTTGCTCGC 58.624 47.619 0.00 0.00 40.48 5.03
8307 11123 2.987046 GGAACTGACAAAAGTTGCTCG 58.013 47.619 1.86 0.00 43.09 5.03
8310 11126 7.649057 ACTTTATAGGAACTGACAAAAGTTGC 58.351 34.615 0.86 0.86 45.78 4.17
8311 11127 9.665264 GAACTTTATAGGAACTGACAAAAGTTG 57.335 33.333 13.25 0.00 41.94 3.16
8312 11128 9.628500 AGAACTTTATAGGAACTGACAAAAGTT 57.372 29.630 9.35 9.35 43.14 2.66
8313 11129 9.628500 AAGAACTTTATAGGAACTGACAAAAGT 57.372 29.630 0.00 0.00 41.52 2.66
8315 11131 9.063615 GGAAGAACTTTATAGGAACTGACAAAA 57.936 33.333 0.00 0.00 41.52 2.44
8316 11132 8.437575 AGGAAGAACTTTATAGGAACTGACAAA 58.562 33.333 0.00 0.00 41.52 2.83
8317 11133 7.878127 CAGGAAGAACTTTATAGGAACTGACAA 59.122 37.037 0.00 0.00 41.52 3.18
8318 11134 7.016268 ACAGGAAGAACTTTATAGGAACTGACA 59.984 37.037 0.00 0.00 41.52 3.58
8319 11135 7.387643 ACAGGAAGAACTTTATAGGAACTGAC 58.612 38.462 0.00 0.00 41.52 3.51
8320 11136 7.554959 ACAGGAAGAACTTTATAGGAACTGA 57.445 36.000 0.00 0.00 41.52 3.41
8321 11137 9.720769 TTTACAGGAAGAACTTTATAGGAACTG 57.279 33.333 0.00 0.00 41.52 3.16
8348 11164 9.463902 TCCGGTGATATTACCTCAAAAATAAAA 57.536 29.630 14.25 0.00 38.62 1.52
8349 11165 9.463902 TTCCGGTGATATTACCTCAAAAATAAA 57.536 29.630 14.25 0.00 38.62 1.40
8350 11166 9.116067 CTTCCGGTGATATTACCTCAAAAATAA 57.884 33.333 14.25 0.00 38.62 1.40
8351 11167 8.269317 ACTTCCGGTGATATTACCTCAAAAATA 58.731 33.333 14.25 0.00 38.62 1.40
8352 11168 7.116736 ACTTCCGGTGATATTACCTCAAAAAT 58.883 34.615 14.25 0.00 38.62 1.82
8353 11169 6.478129 ACTTCCGGTGATATTACCTCAAAAA 58.522 36.000 14.25 1.80 38.62 1.94
8354 11170 6.057321 ACTTCCGGTGATATTACCTCAAAA 57.943 37.500 14.25 3.29 38.62 2.44
8355 11171 5.667466 GACTTCCGGTGATATTACCTCAAA 58.333 41.667 14.25 5.39 38.62 2.69
8356 11172 4.202080 CGACTTCCGGTGATATTACCTCAA 60.202 45.833 14.25 6.14 38.62 3.02
8474 11292 2.993220 TGATATGTCCGCATGCGTATTC 59.007 45.455 35.55 22.47 36.58 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.