Multiple sequence alignment - TraesCS6A01G340300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G340300 chr6A 100.000 4157 0 0 1 4157 573482862 573478706 0.000000e+00 7677.0
1 TraesCS6A01G340300 chr6D 90.615 1790 117 24 1758 3523 428895551 428893789 0.000000e+00 2327.0
2 TraesCS6A01G340300 chr6D 90.431 1160 69 24 169 1316 428896685 428895556 0.000000e+00 1489.0
3 TraesCS6A01G340300 chr6D 91.153 373 28 2 3743 4110 428893692 428893320 6.200000e-138 501.0
4 TraesCS6A01G340300 chr6D 90.411 73 7 0 3524 3596 428893762 428893690 3.420000e-16 97.1
5 TraesCS6A01G340300 chr6B 87.866 1228 90 25 139 1344 645483869 645482679 0.000000e+00 1387.0
6 TraesCS6A01G340300 chr6B 86.316 1330 93 40 2607 3885 645481408 645480117 0.000000e+00 1365.0
7 TraesCS6A01G340300 chr6B 90.047 1065 81 16 1569 2610 645482582 645481520 0.000000e+00 1356.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G340300 chr6A 573478706 573482862 4156 True 7677.000000 7677 100.000000 1 4157 1 chr6A.!!$R1 4156
1 TraesCS6A01G340300 chr6D 428893320 428896685 3365 True 1103.525000 2327 90.652500 169 4110 4 chr6D.!!$R1 3941
2 TraesCS6A01G340300 chr6B 645480117 645483869 3752 True 1369.333333 1387 88.076333 139 3885 3 chr6B.!!$R1 3746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.028770 CGTGCCGTTGTGTTGTCAAT 59.971 50.0 0.0 0.0 0.00 2.57 F
800 823 0.040204 CTGGACCTCCAAGCCCATTT 59.960 55.0 0.0 0.0 46.97 2.32 F
1443 1471 0.105224 CGTGGTGTGTCAACTGGGTA 59.895 55.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1452 0.105224 TACCCAGTTGACACACCACG 59.895 55.0 0.00 0.00 0.0 4.94 R
1794 1836 0.318360 TTGACCGTCGTGTACTGCAG 60.318 55.0 13.48 13.48 0.0 4.41 R
3312 3486 0.889186 ACTAACAACCTTGGCTGGCG 60.889 55.0 0.00 0.00 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.636043 ACTTCGTGCGTGCCGTTG 61.636 61.111 3.39 1.55 0.00 4.10
18 19 3.636043 CTTCGTGCGTGCCGTTGT 61.636 61.111 3.39 0.00 0.00 3.32
19 20 3.838229 CTTCGTGCGTGCCGTTGTG 62.838 63.158 3.39 0.00 0.00 3.33
21 22 4.230863 CGTGCGTGCCGTTGTGTT 62.231 61.111 0.00 0.00 0.00 3.32
22 23 2.650602 GTGCGTGCCGTTGTGTTG 60.651 61.111 0.00 0.00 0.00 3.33
23 24 3.128188 TGCGTGCCGTTGTGTTGT 61.128 55.556 0.00 0.00 0.00 3.32
24 25 2.351888 GCGTGCCGTTGTGTTGTC 60.352 61.111 0.00 0.00 0.00 3.18
25 26 3.094154 CGTGCCGTTGTGTTGTCA 58.906 55.556 0.00 0.00 0.00 3.58
26 27 1.425825 CGTGCCGTTGTGTTGTCAA 59.574 52.632 0.00 0.00 0.00 3.18
27 28 0.028770 CGTGCCGTTGTGTTGTCAAT 59.971 50.000 0.00 0.00 0.00 2.57
28 29 1.753956 GTGCCGTTGTGTTGTCAATC 58.246 50.000 0.00 0.00 0.00 2.67
29 30 0.665835 TGCCGTTGTGTTGTCAATCC 59.334 50.000 0.00 0.00 0.00 3.01
30 31 0.665835 GCCGTTGTGTTGTCAATCCA 59.334 50.000 0.00 0.00 0.00 3.41
31 32 1.066303 GCCGTTGTGTTGTCAATCCAA 59.934 47.619 0.00 0.00 0.00 3.53
32 33 2.288152 GCCGTTGTGTTGTCAATCCAAT 60.288 45.455 3.96 0.00 0.00 3.16
33 34 3.564511 CCGTTGTGTTGTCAATCCAATC 58.435 45.455 3.96 0.00 0.00 2.67
34 35 3.004210 CCGTTGTGTTGTCAATCCAATCA 59.996 43.478 3.96 0.00 0.00 2.57
35 36 4.321156 CCGTTGTGTTGTCAATCCAATCAT 60.321 41.667 3.96 0.00 0.00 2.45
36 37 5.106357 CCGTTGTGTTGTCAATCCAATCATA 60.106 40.000 3.96 0.00 0.00 2.15
37 38 6.023435 CGTTGTGTTGTCAATCCAATCATAG 58.977 40.000 3.96 0.00 0.00 2.23
38 39 6.324819 GTTGTGTTGTCAATCCAATCATAGG 58.675 40.000 3.96 0.00 0.00 2.57
39 40 5.569355 TGTGTTGTCAATCCAATCATAGGT 58.431 37.500 0.00 0.00 0.00 3.08
40 41 6.009589 TGTGTTGTCAATCCAATCATAGGTT 58.990 36.000 0.00 0.00 0.00 3.50
41 42 6.072008 TGTGTTGTCAATCCAATCATAGGTTG 60.072 38.462 0.00 0.00 0.00 3.77
42 43 5.418524 TGTTGTCAATCCAATCATAGGTTGG 59.581 40.000 2.61 2.61 45.94 3.77
43 44 4.535781 TGTCAATCCAATCATAGGTTGGG 58.464 43.478 9.03 0.00 44.92 4.12
44 45 4.229353 TGTCAATCCAATCATAGGTTGGGA 59.771 41.667 9.03 0.00 44.92 4.37
45 46 4.580580 GTCAATCCAATCATAGGTTGGGAC 59.419 45.833 9.03 5.44 44.92 4.46
46 47 4.229353 TCAATCCAATCATAGGTTGGGACA 59.771 41.667 9.03 0.00 44.92 4.02
47 48 5.103558 TCAATCCAATCATAGGTTGGGACAT 60.104 40.000 9.03 0.00 44.92 3.06
48 49 4.169059 TCCAATCATAGGTTGGGACATG 57.831 45.455 9.03 0.00 44.92 3.21
49 50 3.785325 TCCAATCATAGGTTGGGACATGA 59.215 43.478 9.03 0.00 44.92 3.07
50 51 3.885297 CCAATCATAGGTTGGGACATGAC 59.115 47.826 0.00 0.00 41.90 3.06
51 52 4.525996 CAATCATAGGTTGGGACATGACA 58.474 43.478 0.00 0.00 39.30 3.58
52 53 3.627395 TCATAGGTTGGGACATGACAC 57.373 47.619 0.00 0.00 39.30 3.67
53 54 2.238646 TCATAGGTTGGGACATGACACC 59.761 50.000 0.00 0.00 39.30 4.16
54 55 2.038863 TAGGTTGGGACATGACACCT 57.961 50.000 0.00 5.30 39.30 4.00
55 56 1.149101 AGGTTGGGACATGACACCTT 58.851 50.000 0.00 0.00 39.30 3.50
56 57 1.202927 AGGTTGGGACATGACACCTTG 60.203 52.381 0.00 0.00 39.30 3.61
57 58 1.202879 GGTTGGGACATGACACCTTGA 60.203 52.381 0.00 0.00 39.30 3.02
58 59 1.880027 GTTGGGACATGACACCTTGAC 59.120 52.381 0.00 0.00 39.30 3.18
59 60 1.135960 TGGGACATGACACCTTGACA 58.864 50.000 0.00 0.00 0.00 3.58
60 61 1.492599 TGGGACATGACACCTTGACAA 59.507 47.619 0.00 0.00 0.00 3.18
61 62 2.092158 TGGGACATGACACCTTGACAAA 60.092 45.455 0.00 0.00 0.00 2.83
62 63 2.293399 GGGACATGACACCTTGACAAAC 59.707 50.000 0.00 0.00 0.00 2.93
63 64 2.948979 GGACATGACACCTTGACAAACA 59.051 45.455 0.00 0.00 0.00 2.83
64 65 3.569701 GGACATGACACCTTGACAAACAT 59.430 43.478 0.00 0.00 0.00 2.71
65 66 4.320494 GGACATGACACCTTGACAAACATC 60.320 45.833 0.00 0.00 0.00 3.06
66 67 4.206375 ACATGACACCTTGACAAACATCA 58.794 39.130 0.00 0.00 0.00 3.07
67 68 4.276678 ACATGACACCTTGACAAACATCAG 59.723 41.667 0.00 0.00 0.00 2.90
68 69 4.149511 TGACACCTTGACAAACATCAGA 57.850 40.909 0.00 0.00 0.00 3.27
69 70 4.129380 TGACACCTTGACAAACATCAGAG 58.871 43.478 0.00 0.00 0.00 3.35
70 71 2.880890 ACACCTTGACAAACATCAGAGC 59.119 45.455 0.00 0.00 0.00 4.09
71 72 2.880268 CACCTTGACAAACATCAGAGCA 59.120 45.455 0.00 0.00 0.00 4.26
72 73 3.504906 CACCTTGACAAACATCAGAGCAT 59.495 43.478 0.00 0.00 0.00 3.79
73 74 4.022589 CACCTTGACAAACATCAGAGCATT 60.023 41.667 0.00 0.00 0.00 3.56
74 75 5.181811 CACCTTGACAAACATCAGAGCATTA 59.818 40.000 0.00 0.00 0.00 1.90
75 76 5.413833 ACCTTGACAAACATCAGAGCATTAG 59.586 40.000 0.00 0.00 0.00 1.73
76 77 4.952262 TGACAAACATCAGAGCATTAGC 57.048 40.909 0.00 0.00 42.56 3.09
77 78 4.325972 TGACAAACATCAGAGCATTAGCA 58.674 39.130 0.00 0.00 45.49 3.49
78 79 4.761227 TGACAAACATCAGAGCATTAGCAA 59.239 37.500 0.00 0.00 45.49 3.91
79 80 5.241285 TGACAAACATCAGAGCATTAGCAAA 59.759 36.000 0.00 0.00 45.49 3.68
80 81 5.706916 ACAAACATCAGAGCATTAGCAAAG 58.293 37.500 0.00 0.00 45.49 2.77
81 82 4.367386 AACATCAGAGCATTAGCAAAGC 57.633 40.909 0.00 0.00 45.49 3.51
82 83 3.618351 ACATCAGAGCATTAGCAAAGCT 58.382 40.909 0.00 0.00 45.49 3.74
83 84 4.015084 ACATCAGAGCATTAGCAAAGCTT 58.985 39.130 0.00 0.00 45.49 3.74
84 85 4.096081 ACATCAGAGCATTAGCAAAGCTTC 59.904 41.667 0.00 0.00 45.49 3.86
85 86 3.678289 TCAGAGCATTAGCAAAGCTTCA 58.322 40.909 0.00 0.00 45.49 3.02
86 87 4.267536 TCAGAGCATTAGCAAAGCTTCAT 58.732 39.130 0.00 0.00 45.49 2.57
87 88 4.703575 TCAGAGCATTAGCAAAGCTTCATT 59.296 37.500 0.00 0.00 45.49 2.57
88 89 4.798907 CAGAGCATTAGCAAAGCTTCATTG 59.201 41.667 0.00 0.00 45.49 2.82
89 90 4.110482 GAGCATTAGCAAAGCTTCATTGG 58.890 43.478 0.00 0.00 45.49 3.16
90 91 3.118884 AGCATTAGCAAAGCTTCATTGGG 60.119 43.478 0.00 0.00 45.49 4.12
91 92 3.788937 CATTAGCAAAGCTTCATTGGGG 58.211 45.455 0.00 0.00 40.44 4.96
92 93 1.185315 TAGCAAAGCTTCATTGGGGC 58.815 50.000 0.00 0.00 40.44 5.80
93 94 1.078918 GCAAAGCTTCATTGGGGCC 60.079 57.895 0.00 0.00 0.00 5.80
94 95 1.829523 GCAAAGCTTCATTGGGGCCA 61.830 55.000 4.39 0.00 0.00 5.36
95 96 0.686224 CAAAGCTTCATTGGGGCCAA 59.314 50.000 4.39 0.00 40.47 4.52
96 97 0.978907 AAAGCTTCATTGGGGCCAAG 59.021 50.000 4.39 0.20 39.47 3.61
97 98 0.906282 AAGCTTCATTGGGGCCAAGG 60.906 55.000 4.39 0.00 39.47 3.61
98 99 2.361567 GCTTCATTGGGGCCAAGGG 61.362 63.158 4.39 0.00 39.47 3.95
99 100 1.686800 CTTCATTGGGGCCAAGGGG 60.687 63.158 4.39 0.00 39.47 4.79
100 101 3.251137 TTCATTGGGGCCAAGGGGG 62.251 63.158 4.39 0.00 39.47 5.40
126 127 2.529136 CCCCCTCTCCCACACACA 60.529 66.667 0.00 0.00 0.00 3.72
127 128 2.750350 CCCCTCTCCCACACACAC 59.250 66.667 0.00 0.00 0.00 3.82
128 129 2.750350 CCCTCTCCCACACACACC 59.250 66.667 0.00 0.00 0.00 4.16
129 130 2.750350 CCTCTCCCACACACACCC 59.250 66.667 0.00 0.00 0.00 4.61
130 131 2.750350 CTCTCCCACACACACCCC 59.250 66.667 0.00 0.00 0.00 4.95
131 132 3.238497 TCTCCCACACACACCCCG 61.238 66.667 0.00 0.00 0.00 5.73
146 147 2.367202 CCCGCCCCACAGTACTGAT 61.367 63.158 29.30 10.76 0.00 2.90
179 180 9.415008 AGTATCTAAGTGATTAGAGCTGAAGAA 57.585 33.333 0.00 0.00 37.01 2.52
187 188 8.045507 AGTGATTAGAGCTGAAGAAAATCATCA 58.954 33.333 0.00 0.00 36.19 3.07
270 271 2.224305 GCCACTGGACTGAAACAGTACT 60.224 50.000 14.01 0.00 44.98 2.73
272 273 4.557205 CCACTGGACTGAAACAGTACTAC 58.443 47.826 14.01 3.14 44.98 2.73
293 294 2.474816 GCGGATCTACTAAACTGCAGG 58.525 52.381 19.93 1.96 35.13 4.85
331 332 1.153628 GCAGTGCCGTACCCTGTAG 60.154 63.158 2.85 0.00 0.00 2.74
447 448 1.003696 TGACAAACCACACACCAGACA 59.996 47.619 0.00 0.00 0.00 3.41
450 451 0.746563 AAACCACACACCAGACACGG 60.747 55.000 0.00 0.00 0.00 4.94
456 457 1.760875 ACACCAGACACGGGTCAGT 60.761 57.895 22.01 14.25 46.80 3.41
462 463 3.628280 GACACGGGTCAGTCGGAGC 62.628 68.421 14.30 0.00 43.73 4.70
467 468 2.027625 GGGTCAGTCGGAGCAAACG 61.028 63.158 4.58 0.00 45.90 3.60
480 481 3.284449 AAACGAACACCGCCTGCC 61.284 61.111 0.00 0.00 43.32 4.85
506 507 2.360475 AGAAAAGCGGGGCTGAGC 60.360 61.111 0.00 0.00 39.62 4.26
686 694 2.126850 GCCGCCGCTCTGTTTTTC 60.127 61.111 0.00 0.00 0.00 2.29
759 767 0.521735 GCCCGTTTGACATCCAAGTC 59.478 55.000 0.00 0.00 35.94 3.01
760 768 1.890876 CCCGTTTGACATCCAAGTCA 58.109 50.000 0.00 0.00 46.12 3.41
800 823 0.040204 CTGGACCTCCAAGCCCATTT 59.960 55.000 0.00 0.00 46.97 2.32
820 843 2.572191 TAGCCCACGTAATCTTGACG 57.428 50.000 0.00 0.00 45.75 4.35
839 864 2.516930 ATCGGGCCCAAAGATGCG 60.517 61.111 24.92 4.81 0.00 4.73
862 887 1.078214 CGGCCCATGAGAAGAAGCA 60.078 57.895 0.00 0.00 0.00 3.91
864 889 1.372087 GGCCCATGAGAAGAAGCACG 61.372 60.000 0.00 0.00 0.00 5.34
902 927 1.808945 GGATGGATGGATAAAGCGCTG 59.191 52.381 12.58 0.00 0.00 5.18
905 930 1.518903 GGATGGATAAAGCGCTGCCC 61.519 60.000 12.58 10.74 0.00 5.36
906 931 0.536006 GATGGATAAAGCGCTGCCCT 60.536 55.000 12.58 3.33 0.00 5.19
936 961 2.223200 CTTCTCCGCTGCTCTGCTCA 62.223 60.000 0.00 0.00 0.00 4.26
937 962 1.611474 TTCTCCGCTGCTCTGCTCAT 61.611 55.000 0.00 0.00 0.00 2.90
940 965 1.153409 CCGCTGCTCTGCTCATCTT 60.153 57.895 0.00 0.00 0.00 2.40
941 966 1.152989 CCGCTGCTCTGCTCATCTTC 61.153 60.000 0.00 0.00 0.00 2.87
942 967 1.152989 CGCTGCTCTGCTCATCTTCC 61.153 60.000 0.00 0.00 0.00 3.46
943 968 0.178533 GCTGCTCTGCTCATCTTCCT 59.821 55.000 0.00 0.00 0.00 3.36
945 970 2.553086 CTGCTCTGCTCATCTTCCTTC 58.447 52.381 0.00 0.00 0.00 3.46
946 971 2.168936 CTGCTCTGCTCATCTTCCTTCT 59.831 50.000 0.00 0.00 0.00 2.85
947 972 3.369175 TGCTCTGCTCATCTTCCTTCTA 58.631 45.455 0.00 0.00 0.00 2.10
948 973 3.384146 TGCTCTGCTCATCTTCCTTCTAG 59.616 47.826 0.00 0.00 0.00 2.43
949 974 3.243839 GCTCTGCTCATCTTCCTTCTAGG 60.244 52.174 0.00 0.00 36.46 3.02
950 975 2.697751 TCTGCTCATCTTCCTTCTAGGC 59.302 50.000 0.00 0.00 34.61 3.93
972 997 2.622210 AGGCTAGGCTAGGGTTTATCC 58.378 52.381 18.73 12.85 0.00 2.59
1215 1243 0.317020 GCTGCTTGTTTTTCGCGAGT 60.317 50.000 9.59 0.00 0.00 4.18
1219 1247 1.741993 CTTGTTTTTCGCGAGTGGTG 58.258 50.000 9.59 0.00 0.00 4.17
1220 1248 1.329292 CTTGTTTTTCGCGAGTGGTGA 59.671 47.619 9.59 0.00 0.00 4.02
1232 1260 1.625818 GAGTGGTGATGGTGGTTCTCT 59.374 52.381 0.00 0.00 0.00 3.10
1254 1282 2.168728 TGCGCCCTGTTACATGTGTATA 59.831 45.455 9.11 0.00 0.00 1.47
1257 1285 4.049186 CGCCCTGTTACATGTGTATACTC 58.951 47.826 9.11 0.83 0.00 2.59
1265 1293 6.814146 TGTTACATGTGTATACTCGCAATTGA 59.186 34.615 10.34 0.00 0.00 2.57
1307 1335 4.307259 AGGGGGCTAACTGAATAATGAGA 58.693 43.478 0.00 0.00 0.00 3.27
1318 1346 5.240183 ACTGAATAATGAGATTGCCGGAATG 59.760 40.000 5.05 0.00 0.00 2.67
1319 1347 4.022935 TGAATAATGAGATTGCCGGAATGC 60.023 41.667 5.05 0.00 0.00 3.56
1321 1349 0.464373 ATGAGATTGCCGGAATGCGT 60.464 50.000 5.05 0.00 0.00 5.24
1326 1354 2.687935 AGATTGCCGGAATGCGTTTATT 59.312 40.909 5.05 0.00 0.00 1.40
1334 1362 3.984633 CGGAATGCGTTTATTTGTGGTTT 59.015 39.130 0.00 0.00 0.00 3.27
1335 1363 4.143431 CGGAATGCGTTTATTTGTGGTTTG 60.143 41.667 0.00 0.00 0.00 2.93
1336 1364 4.151512 GGAATGCGTTTATTTGTGGTTTGG 59.848 41.667 0.00 0.00 0.00 3.28
1344 1372 1.626686 TTTGTGGTTTGGGATGCGAT 58.373 45.000 0.00 0.00 0.00 4.58
1345 1373 0.887247 TTGTGGTTTGGGATGCGATG 59.113 50.000 0.00 0.00 0.00 3.84
1346 1374 1.139520 GTGGTTTGGGATGCGATGC 59.860 57.895 0.00 0.00 0.00 3.91
1347 1375 2.405805 TGGTTTGGGATGCGATGCG 61.406 57.895 0.00 0.00 0.00 4.73
1350 1378 1.225855 GTTTGGGATGCGATGCGATA 58.774 50.000 0.00 0.00 0.00 2.92
1351 1379 1.069906 GTTTGGGATGCGATGCGATAC 60.070 52.381 0.00 0.00 0.00 2.24
1353 1381 1.080772 GGGATGCGATGCGATACGA 60.081 57.895 0.00 0.00 0.00 3.43
1355 1383 0.387367 GGATGCGATGCGATACGAGT 60.387 55.000 0.00 0.00 0.00 4.18
1356 1384 1.409412 GATGCGATGCGATACGAGTT 58.591 50.000 0.00 0.00 0.00 3.01
1357 1385 2.581637 GATGCGATGCGATACGAGTTA 58.418 47.619 0.00 0.00 0.00 2.24
1358 1386 2.032414 TGCGATGCGATACGAGTTAG 57.968 50.000 0.00 0.00 0.00 2.34
1359 1387 1.600485 TGCGATGCGATACGAGTTAGA 59.400 47.619 0.00 0.00 0.00 2.10
1360 1388 2.225727 TGCGATGCGATACGAGTTAGAT 59.774 45.455 0.00 0.00 0.00 1.98
1361 1389 2.590276 GCGATGCGATACGAGTTAGATG 59.410 50.000 0.00 0.00 0.00 2.90
1362 1390 2.590276 CGATGCGATACGAGTTAGATGC 59.410 50.000 0.00 0.00 0.00 3.91
1367 1395 2.721603 CGATACGAGTTAGATGCAGTGC 59.278 50.000 8.58 8.58 0.00 4.40
1374 1402 2.154462 GTTAGATGCAGTGCACCTTGT 58.846 47.619 20.92 3.33 43.04 3.16
1378 1406 2.431782 AGATGCAGTGCACCTTGTTTTT 59.568 40.909 22.44 0.00 43.04 1.94
1381 1409 2.195922 GCAGTGCACCTTGTTTTTCTG 58.804 47.619 14.63 1.85 0.00 3.02
1382 1410 2.417243 GCAGTGCACCTTGTTTTTCTGT 60.417 45.455 14.63 0.00 0.00 3.41
1384 1412 4.601019 CAGTGCACCTTGTTTTTCTGTAG 58.399 43.478 14.63 0.00 0.00 2.74
1385 1413 4.335315 CAGTGCACCTTGTTTTTCTGTAGA 59.665 41.667 14.63 0.00 0.00 2.59
1386 1414 4.576463 AGTGCACCTTGTTTTTCTGTAGAG 59.424 41.667 14.63 0.00 0.00 2.43
1388 1416 4.947388 TGCACCTTGTTTTTCTGTAGAGTT 59.053 37.500 0.00 0.00 0.00 3.01
1389 1417 5.417580 TGCACCTTGTTTTTCTGTAGAGTTT 59.582 36.000 0.00 0.00 0.00 2.66
1391 1419 7.132863 GCACCTTGTTTTTCTGTAGAGTTTAG 58.867 38.462 0.00 0.00 0.00 1.85
1393 1421 7.282450 CACCTTGTTTTTCTGTAGAGTTTAGGT 59.718 37.037 0.00 0.00 0.00 3.08
1395 1423 9.503399 CCTTGTTTTTCTGTAGAGTTTAGGTAT 57.497 33.333 0.00 0.00 0.00 2.73
1406 1434 9.940974 TGTAGAGTTTAGGTATATTGGTTAGGA 57.059 33.333 0.00 0.00 0.00 2.94
1423 1451 7.826690 TGGTTAGGAAATTTAAATGTCTCTGC 58.173 34.615 16.28 9.78 0.00 4.26
1424 1452 7.093945 TGGTTAGGAAATTTAAATGTCTCTGCC 60.094 37.037 16.28 15.87 0.00 4.85
1425 1453 5.567138 AGGAAATTTAAATGTCTCTGCCG 57.433 39.130 16.28 0.00 0.00 5.69
1426 1454 5.010282 AGGAAATTTAAATGTCTCTGCCGT 58.990 37.500 16.28 0.00 0.00 5.68
1427 1455 5.095490 GGAAATTTAAATGTCTCTGCCGTG 58.905 41.667 16.28 0.00 0.00 4.94
1428 1456 4.701956 AATTTAAATGTCTCTGCCGTGG 57.298 40.909 0.39 0.00 0.00 4.94
1429 1457 2.851263 TTAAATGTCTCTGCCGTGGT 57.149 45.000 0.00 0.00 0.00 4.16
1431 1459 0.108585 AAATGTCTCTGCCGTGGTGT 59.891 50.000 0.00 0.00 0.00 4.16
1433 1461 1.758440 ATGTCTCTGCCGTGGTGTGT 61.758 55.000 0.00 0.00 0.00 3.72
1434 1462 1.664965 GTCTCTGCCGTGGTGTGTC 60.665 63.158 0.00 0.00 0.00 3.67
1435 1463 2.131067 TCTCTGCCGTGGTGTGTCA 61.131 57.895 0.00 0.00 0.00 3.58
1436 1464 1.227527 CTCTGCCGTGGTGTGTCAA 60.228 57.895 0.00 0.00 0.00 3.18
1438 1466 1.523711 CTGCCGTGGTGTGTCAACT 60.524 57.895 0.00 0.00 0.00 3.16
1439 1467 1.775039 CTGCCGTGGTGTGTCAACTG 61.775 60.000 0.00 0.00 0.00 3.16
1440 1468 2.542907 GCCGTGGTGTGTCAACTGG 61.543 63.158 0.00 0.00 0.00 4.00
1441 1469 1.891919 CCGTGGTGTGTCAACTGGG 60.892 63.158 0.00 0.00 0.00 4.45
1442 1470 1.153249 CGTGGTGTGTCAACTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
1443 1471 0.105224 CGTGGTGTGTCAACTGGGTA 59.895 55.000 0.00 0.00 0.00 3.69
1444 1472 1.270625 CGTGGTGTGTCAACTGGGTAT 60.271 52.381 0.00 0.00 0.00 2.73
1445 1473 2.423577 GTGGTGTGTCAACTGGGTATC 58.576 52.381 0.00 0.00 0.00 2.24
1446 1474 2.038557 GTGGTGTGTCAACTGGGTATCT 59.961 50.000 0.00 0.00 0.00 1.98
1447 1475 2.301870 TGGTGTGTCAACTGGGTATCTC 59.698 50.000 0.00 0.00 0.00 2.75
1448 1476 2.567615 GGTGTGTCAACTGGGTATCTCT 59.432 50.000 0.00 0.00 0.00 3.10
1449 1477 3.368531 GGTGTGTCAACTGGGTATCTCTC 60.369 52.174 0.00 0.00 0.00 3.20
1450 1478 3.511934 GTGTGTCAACTGGGTATCTCTCT 59.488 47.826 0.00 0.00 0.00 3.10
1451 1479 4.705507 GTGTGTCAACTGGGTATCTCTCTA 59.294 45.833 0.00 0.00 0.00 2.43
1452 1480 5.185249 GTGTGTCAACTGGGTATCTCTCTAA 59.815 44.000 0.00 0.00 0.00 2.10
1453 1481 5.419155 TGTGTCAACTGGGTATCTCTCTAAG 59.581 44.000 0.00 0.00 0.00 2.18
1454 1482 4.402793 TGTCAACTGGGTATCTCTCTAAGC 59.597 45.833 0.00 0.00 0.00 3.09
1455 1483 4.647399 GTCAACTGGGTATCTCTCTAAGCT 59.353 45.833 0.00 0.00 0.00 3.74
1456 1484 5.128008 GTCAACTGGGTATCTCTCTAAGCTT 59.872 44.000 3.48 3.48 0.00 3.74
1457 1485 5.127845 TCAACTGGGTATCTCTCTAAGCTTG 59.872 44.000 9.86 0.00 0.00 4.01
1458 1486 3.386402 ACTGGGTATCTCTCTAAGCTTGC 59.614 47.826 9.86 0.00 0.00 4.01
1459 1487 3.640967 CTGGGTATCTCTCTAAGCTTGCT 59.359 47.826 9.86 0.00 0.00 3.91
1460 1488 3.386078 TGGGTATCTCTCTAAGCTTGCTG 59.614 47.826 9.86 0.00 0.00 4.41
1461 1489 3.389221 GGTATCTCTCTAAGCTTGCTGC 58.611 50.000 9.86 0.00 43.29 5.25
1462 1490 3.181471 GGTATCTCTCTAAGCTTGCTGCA 60.181 47.826 9.86 0.00 45.94 4.41
1463 1491 3.842007 ATCTCTCTAAGCTTGCTGCAT 57.158 42.857 9.86 0.00 45.94 3.96
1464 1492 4.952071 ATCTCTCTAAGCTTGCTGCATA 57.048 40.909 9.86 0.00 45.94 3.14
1465 1493 4.319139 TCTCTCTAAGCTTGCTGCATAG 57.681 45.455 9.86 2.16 45.94 2.23
1466 1494 3.703556 TCTCTCTAAGCTTGCTGCATAGT 59.296 43.478 9.86 0.00 45.94 2.12
1467 1495 3.790091 TCTCTAAGCTTGCTGCATAGTG 58.210 45.455 9.86 3.59 45.94 2.74
1468 1496 3.196469 TCTCTAAGCTTGCTGCATAGTGT 59.804 43.478 9.86 0.00 45.94 3.55
1469 1497 3.937706 CTCTAAGCTTGCTGCATAGTGTT 59.062 43.478 9.86 5.31 45.94 3.32
1470 1498 3.686241 TCTAAGCTTGCTGCATAGTGTTG 59.314 43.478 9.86 0.00 45.94 3.33
1471 1499 2.189594 AGCTTGCTGCATAGTGTTGA 57.810 45.000 1.84 0.00 45.94 3.18
1472 1500 1.808945 AGCTTGCTGCATAGTGTTGAC 59.191 47.619 1.84 0.00 45.94 3.18
1473 1501 1.464687 GCTTGCTGCATAGTGTTGACG 60.465 52.381 1.84 0.00 42.31 4.35
1474 1502 2.068519 CTTGCTGCATAGTGTTGACGA 58.931 47.619 1.84 0.00 0.00 4.20
1475 1503 2.162319 TGCTGCATAGTGTTGACGAA 57.838 45.000 0.00 0.00 0.00 3.85
1476 1504 2.488952 TGCTGCATAGTGTTGACGAAA 58.511 42.857 0.00 0.00 0.00 3.46
1477 1505 3.073678 TGCTGCATAGTGTTGACGAAAT 58.926 40.909 0.00 0.00 0.00 2.17
1478 1506 3.501828 TGCTGCATAGTGTTGACGAAATT 59.498 39.130 0.00 0.00 0.00 1.82
1479 1507 4.023279 TGCTGCATAGTGTTGACGAAATTT 60.023 37.500 0.00 0.00 0.00 1.82
1480 1508 4.321745 GCTGCATAGTGTTGACGAAATTTG 59.678 41.667 0.00 0.00 0.00 2.32
1481 1509 4.793071 TGCATAGTGTTGACGAAATTTGG 58.207 39.130 0.00 0.00 0.00 3.28
1482 1510 4.165779 GCATAGTGTTGACGAAATTTGGG 58.834 43.478 5.14 0.00 0.00 4.12
1483 1511 4.083003 GCATAGTGTTGACGAAATTTGGGA 60.083 41.667 5.14 0.00 0.00 4.37
1484 1512 5.393027 GCATAGTGTTGACGAAATTTGGGAT 60.393 40.000 5.14 0.00 0.00 3.85
1485 1513 6.620678 CATAGTGTTGACGAAATTTGGGATT 58.379 36.000 5.14 0.00 0.00 3.01
1486 1514 5.121221 AGTGTTGACGAAATTTGGGATTC 57.879 39.130 5.14 0.00 0.00 2.52
1487 1515 4.827284 AGTGTTGACGAAATTTGGGATTCT 59.173 37.500 5.14 0.00 0.00 2.40
1488 1516 6.001460 AGTGTTGACGAAATTTGGGATTCTA 58.999 36.000 5.14 0.00 0.00 2.10
1489 1517 6.072673 AGTGTTGACGAAATTTGGGATTCTAC 60.073 38.462 5.14 2.06 0.00 2.59
1490 1518 6.001460 TGTTGACGAAATTTGGGATTCTACT 58.999 36.000 5.14 0.00 0.00 2.57
1491 1519 6.072728 TGTTGACGAAATTTGGGATTCTACTG 60.073 38.462 5.14 0.00 0.00 2.74
1492 1520 4.941263 TGACGAAATTTGGGATTCTACTGG 59.059 41.667 5.14 0.00 0.00 4.00
1493 1521 5.174037 ACGAAATTTGGGATTCTACTGGA 57.826 39.130 5.14 0.00 0.00 3.86
1494 1522 5.755849 ACGAAATTTGGGATTCTACTGGAT 58.244 37.500 5.14 0.00 0.00 3.41
1495 1523 6.187682 ACGAAATTTGGGATTCTACTGGATT 58.812 36.000 5.14 0.00 0.00 3.01
1496 1524 7.343357 ACGAAATTTGGGATTCTACTGGATTA 58.657 34.615 5.14 0.00 0.00 1.75
1497 1525 7.832187 ACGAAATTTGGGATTCTACTGGATTAA 59.168 33.333 5.14 0.00 0.00 1.40
1498 1526 8.850156 CGAAATTTGGGATTCTACTGGATTAAT 58.150 33.333 0.00 0.00 0.00 1.40
1504 1532 9.586732 TTGGGATTCTACTGGATTAATTAATGG 57.413 33.333 15.39 7.86 0.00 3.16
1505 1533 8.732854 TGGGATTCTACTGGATTAATTAATGGT 58.267 33.333 15.39 12.50 0.00 3.55
1506 1534 9.232473 GGGATTCTACTGGATTAATTAATGGTC 57.768 37.037 15.39 2.31 0.00 4.02
1507 1535 9.793259 GGATTCTACTGGATTAATTAATGGTCA 57.207 33.333 15.39 9.56 0.00 4.02
1510 1538 9.832445 TTCTACTGGATTAATTAATGGTCAGAC 57.168 33.333 24.49 9.54 0.00 3.51
1511 1539 8.988060 TCTACTGGATTAATTAATGGTCAGACA 58.012 33.333 24.49 16.35 0.00 3.41
1512 1540 9.265901 CTACTGGATTAATTAATGGTCAGACAG 57.734 37.037 24.49 19.26 0.00 3.51
1513 1541 7.861629 ACTGGATTAATTAATGGTCAGACAGA 58.138 34.615 24.49 0.00 0.00 3.41
1514 1542 7.989741 ACTGGATTAATTAATGGTCAGACAGAG 59.010 37.037 24.49 10.69 0.00 3.35
1515 1543 6.767902 TGGATTAATTAATGGTCAGACAGAGC 59.232 38.462 15.39 0.00 44.96 4.09
1516 1544 6.995091 GGATTAATTAATGGTCAGACAGAGCT 59.005 38.462 15.39 0.00 44.98 4.09
1517 1545 7.041508 GGATTAATTAATGGTCAGACAGAGCTG 60.042 40.741 15.39 0.00 44.98 4.24
1518 1546 2.680312 TAATGGTCAGACAGAGCTGC 57.320 50.000 2.17 0.00 44.98 5.25
1519 1547 0.982704 AATGGTCAGACAGAGCTGCT 59.017 50.000 0.00 0.00 44.98 4.24
1520 1548 0.982704 ATGGTCAGACAGAGCTGCTT 59.017 50.000 2.53 0.00 44.98 3.91
1521 1549 1.632589 TGGTCAGACAGAGCTGCTTA 58.367 50.000 2.53 0.00 44.98 3.09
1522 1550 2.182827 TGGTCAGACAGAGCTGCTTAT 58.817 47.619 2.53 0.00 44.98 1.73
1523 1551 2.093816 TGGTCAGACAGAGCTGCTTATG 60.094 50.000 2.53 8.91 44.98 1.90
1524 1552 2.167281 GGTCAGACAGAGCTGCTTATGA 59.833 50.000 18.88 7.73 41.51 2.15
1525 1553 3.181467 GGTCAGACAGAGCTGCTTATGAT 60.181 47.826 18.88 7.36 41.51 2.45
1526 1554 4.050553 GTCAGACAGAGCTGCTTATGATC 58.949 47.826 18.88 13.14 35.86 2.92
1527 1555 3.703052 TCAGACAGAGCTGCTTATGATCA 59.297 43.478 18.88 0.00 35.86 2.92
1528 1556 4.161001 TCAGACAGAGCTGCTTATGATCAA 59.839 41.667 18.88 6.29 35.86 2.57
1529 1557 5.057819 CAGACAGAGCTGCTTATGATCAAT 58.942 41.667 18.88 0.57 0.00 2.57
1530 1558 5.527951 CAGACAGAGCTGCTTATGATCAATT 59.472 40.000 18.88 0.00 0.00 2.32
1531 1559 6.704937 CAGACAGAGCTGCTTATGATCAATTA 59.295 38.462 18.88 0.00 0.00 1.40
1532 1560 7.226128 CAGACAGAGCTGCTTATGATCAATTAA 59.774 37.037 18.88 0.00 0.00 1.40
1533 1561 7.772292 AGACAGAGCTGCTTATGATCAATTAAA 59.228 33.333 18.88 0.00 0.00 1.52
1534 1562 8.461249 ACAGAGCTGCTTATGATCAATTAAAT 57.539 30.769 18.88 0.00 0.00 1.40
1535 1563 8.350722 ACAGAGCTGCTTATGATCAATTAAATG 58.649 33.333 18.88 0.00 0.00 2.32
1536 1564 8.350722 CAGAGCTGCTTATGATCAATTAAATGT 58.649 33.333 2.53 0.00 0.00 2.71
1537 1565 8.910944 AGAGCTGCTTATGATCAATTAAATGTT 58.089 29.630 2.53 0.00 0.00 2.71
1538 1566 9.525409 GAGCTGCTTATGATCAATTAAATGTTT 57.475 29.630 2.53 0.00 0.00 2.83
1539 1567 9.525409 AGCTGCTTATGATCAATTAAATGTTTC 57.475 29.630 0.00 0.00 0.00 2.78
1540 1568 9.304731 GCTGCTTATGATCAATTAAATGTTTCA 57.695 29.630 0.00 2.80 0.00 2.69
1557 1585 7.578310 ATGTTTCATGAAATGGACTATGAGG 57.422 36.000 23.05 0.00 46.73 3.86
1558 1586 6.484288 TGTTTCATGAAATGGACTATGAGGT 58.516 36.000 23.05 0.00 46.73 3.85
1559 1587 6.947733 TGTTTCATGAAATGGACTATGAGGTT 59.052 34.615 23.05 0.00 46.73 3.50
1560 1588 7.451255 TGTTTCATGAAATGGACTATGAGGTTT 59.549 33.333 23.05 0.00 46.73 3.27
1563 1591 7.050377 TCATGAAATGGACTATGAGGTTTCTC 58.950 38.462 0.00 0.00 46.73 2.87
1566 1594 4.657436 ATGGACTATGAGGTTTCTCGAC 57.343 45.455 0.00 0.00 42.79 4.20
1567 1595 2.422479 TGGACTATGAGGTTTCTCGACG 59.578 50.000 0.00 0.00 42.79 5.12
1574 1602 2.100252 TGAGGTTTCTCGACGTCAGTTT 59.900 45.455 17.16 0.00 42.79 2.66
1576 1604 2.864343 AGGTTTCTCGACGTCAGTTTTG 59.136 45.455 17.16 0.00 0.00 2.44
1579 1607 2.589798 TCTCGACGTCAGTTTTGGTT 57.410 45.000 17.16 0.00 0.00 3.67
1581 1609 2.159212 TCTCGACGTCAGTTTTGGTTGA 60.159 45.455 17.16 0.00 0.00 3.18
1598 1626 2.928116 GTTGAATTAACCGACCGGAGAG 59.072 50.000 16.07 0.00 38.96 3.20
1599 1627 1.134907 TGAATTAACCGACCGGAGAGC 60.135 52.381 16.07 0.00 38.96 4.09
1600 1628 1.136500 GAATTAACCGACCGGAGAGCT 59.864 52.381 16.07 0.00 38.96 4.09
1601 1629 0.460311 ATTAACCGACCGGAGAGCTG 59.540 55.000 16.07 0.00 38.96 4.24
1605 1633 1.004918 CCGACCGGAGAGCTGTTTT 60.005 57.895 9.46 0.00 37.50 2.43
1606 1634 1.291877 CCGACCGGAGAGCTGTTTTG 61.292 60.000 9.46 0.00 37.50 2.44
1607 1635 0.319555 CGACCGGAGAGCTGTTTTGA 60.320 55.000 9.46 0.00 0.00 2.69
1608 1636 1.433534 GACCGGAGAGCTGTTTTGAG 58.566 55.000 9.46 0.00 0.00 3.02
1609 1637 0.603975 ACCGGAGAGCTGTTTTGAGC 60.604 55.000 9.46 0.00 39.46 4.26
1610 1638 0.603707 CCGGAGAGCTGTTTTGAGCA 60.604 55.000 0.00 0.00 41.83 4.26
1612 1640 1.069636 CGGAGAGCTGTTTTGAGCAAC 60.070 52.381 0.00 0.00 41.83 4.17
1630 1662 3.737266 GCAACCAGTTGTGTCATCAAATG 59.263 43.478 11.88 7.95 42.31 2.32
1631 1663 4.499526 GCAACCAGTTGTGTCATCAAATGA 60.500 41.667 11.88 0.00 43.19 2.57
1636 1668 6.205464 ACCAGTTGTGTCATCAAATGAACTAG 59.795 38.462 13.52 0.00 43.19 2.57
1637 1669 6.348786 CCAGTTGTGTCATCAAATGAACTAGG 60.349 42.308 13.52 0.00 43.19 3.02
1644 1676 6.173339 GTCATCAAATGAACTAGGAGGTTGA 58.827 40.000 0.00 0.00 41.69 3.18
1646 1678 7.337942 GTCATCAAATGAACTAGGAGGTTGAAT 59.662 37.037 0.00 0.00 41.69 2.57
1647 1679 7.337689 TCATCAAATGAACTAGGAGGTTGAATG 59.662 37.037 0.00 0.05 36.11 2.67
1648 1680 5.415701 TCAAATGAACTAGGAGGTTGAATGC 59.584 40.000 0.00 0.00 0.00 3.56
1649 1681 4.851639 ATGAACTAGGAGGTTGAATGCT 57.148 40.909 0.00 0.00 0.00 3.79
1650 1682 4.207891 TGAACTAGGAGGTTGAATGCTC 57.792 45.455 0.00 0.00 0.00 4.26
1651 1683 3.055094 TGAACTAGGAGGTTGAATGCTCC 60.055 47.826 0.00 0.00 36.30 4.70
1652 1684 1.840635 ACTAGGAGGTTGAATGCTCCC 59.159 52.381 0.00 0.00 36.70 4.30
1654 1686 0.622665 AGGAGGTTGAATGCTCCCAG 59.377 55.000 0.00 0.00 36.70 4.45
1672 1710 6.402983 GCTCCCAGCATCAATATATCGAAAAG 60.403 42.308 0.00 0.00 41.89 2.27
1676 1714 6.402983 CCAGCATCAATATATCGAAAAGGAGC 60.403 42.308 0.00 0.00 0.00 4.70
1681 1719 5.306937 TCAATATATCGAAAAGGAGCCCAGA 59.693 40.000 0.00 0.00 0.00 3.86
1697 1735 3.507622 GCCCAGAAAGCAGTTATGTTTCT 59.492 43.478 0.00 0.00 37.31 2.52
1709 1747 5.049828 AGTTATGTTTCTTTTGTGGCTTGC 58.950 37.500 0.00 0.00 0.00 4.01
1710 1748 1.919918 TGTTTCTTTTGTGGCTTGCG 58.080 45.000 0.00 0.00 0.00 4.85
1781 1819 2.742204 GCTTCCGGGTCTGAAACTATCC 60.742 54.545 0.00 0.00 0.00 2.59
1794 1836 4.081087 TGAAACTATCCCCTGTTACTCTGC 60.081 45.833 0.00 0.00 0.00 4.26
1883 1925 1.299976 GACCGGTGGGATTCTGCTT 59.700 57.895 14.63 0.00 36.97 3.91
1895 1937 2.645838 TTCTGCTTCCTTCAACTGCT 57.354 45.000 0.00 0.00 0.00 4.24
1926 1968 1.417890 CTCAGAGTGGTGAGGTGGTTT 59.582 52.381 0.00 0.00 40.39 3.27
1994 2036 3.119173 GCATTAAGGTATGGCTTGTGCAA 60.119 43.478 0.00 0.00 41.91 4.08
2011 2055 5.820131 TGTGCAATCAGTTTGTTAGTCTTG 58.180 37.500 0.00 0.00 37.65 3.02
2046 2090 9.705290 ATTTTGGTTATAACAAATCCAGTCAAC 57.295 29.630 17.16 0.00 37.62 3.18
2083 2127 4.524749 CTGATATGATGAAGCTTGCAACG 58.475 43.478 2.10 0.00 0.00 4.10
2085 2129 0.179181 ATGATGAAGCTTGCAACGCG 60.179 50.000 2.10 3.53 0.00 6.01
2107 2151 3.552068 GCTTGCGTTACCTGTTTGGATTT 60.552 43.478 0.00 0.00 39.71 2.17
2109 2153 3.971150 TGCGTTACCTGTTTGGATTTTG 58.029 40.909 0.00 0.00 39.71 2.44
2114 2158 5.416326 CGTTACCTGTTTGGATTTTGGGATA 59.584 40.000 0.00 0.00 39.71 2.59
2117 2161 8.973182 GTTACCTGTTTGGATTTTGGGATATTA 58.027 33.333 0.00 0.00 39.71 0.98
2119 2163 6.096282 ACCTGTTTGGATTTTGGGATATTACG 59.904 38.462 0.00 0.00 39.71 3.18
2158 2202 4.141287 TGTTGTATCTGGTTTGGTCCTTG 58.859 43.478 0.00 0.00 0.00 3.61
2171 2216 5.652994 TTGGTCCTTGTATATGTTTTGCC 57.347 39.130 0.00 0.00 0.00 4.52
2204 2250 8.840833 TTAGTTTTCAATATGTCAGTGTGCTA 57.159 30.769 0.00 0.00 0.00 3.49
2207 2253 7.228507 AGTTTTCAATATGTCAGTGTGCTACAA 59.771 33.333 0.00 0.00 0.00 2.41
2209 2255 8.785329 TTTCAATATGTCAGTGTGCTACAATA 57.215 30.769 0.00 0.00 0.00 1.90
2285 2332 6.429078 TGCTAATATGATGAAGCTTGCCTTAG 59.571 38.462 2.10 2.87 35.95 2.18
2301 2348 7.148239 GCTTGCCTTAGCTTTTTACATTCTAGA 60.148 37.037 0.00 0.00 40.80 2.43
2311 2358 9.337091 GCTTTTTACATTCTAGAATTTTACGCA 57.663 29.630 15.49 0.00 0.00 5.24
2334 2381 5.309323 TGTTATGCCAGTTTTGTATCTGC 57.691 39.130 0.00 0.00 0.00 4.26
2338 2385 4.241590 TGCCAGTTTTGTATCTGCTTTG 57.758 40.909 0.00 0.00 0.00 2.77
2348 2401 9.543018 GTTTTGTATCTGCTTTGTTACTACATC 57.457 33.333 0.00 0.00 33.44 3.06
2357 2410 5.064071 GCTTTGTTACTACATCTCTTCTGCC 59.936 44.000 0.00 0.00 33.44 4.85
2358 2411 6.360370 TTTGTTACTACATCTCTTCTGCCT 57.640 37.500 0.00 0.00 33.44 4.75
2409 2464 1.202879 TGGTTGGTGAGTAAAGGCAGG 60.203 52.381 0.00 0.00 0.00 4.85
2598 2653 5.661458 ACCGTGTTCTTATCAAGGTAGATG 58.339 41.667 2.13 0.00 43.48 2.90
2599 2654 5.187186 ACCGTGTTCTTATCAAGGTAGATGT 59.813 40.000 2.13 0.00 43.48 3.06
2643 2814 7.226523 GTGTGCATCTGGTTACATCAACATATA 59.773 37.037 0.00 0.00 39.04 0.86
2644 2815 7.938490 TGTGCATCTGGTTACATCAACATATAT 59.062 33.333 0.00 0.00 39.04 0.86
2673 2844 1.029408 TGTGCGCTGGTGTCAGTTTT 61.029 50.000 9.73 0.00 42.78 2.43
2700 2871 8.139989 GTGTCTGTTTCTGTCTTAGGTTACTTA 58.860 37.037 0.00 0.00 0.00 2.24
2779 2950 4.633565 GCTGTAGCTGAAGATAAAACTGCT 59.366 41.667 0.00 0.00 40.64 4.24
2859 3030 7.155328 AGTCATTTACTAGTTCTGTTGGACAG 58.845 38.462 0.00 1.71 41.36 3.51
2874 3045 5.473162 TGTTGGACAGTTTTGATGTCTATGG 59.527 40.000 6.10 0.00 45.18 2.74
2894 3065 2.616510 GGTGCCTATGTTTCTGAGCTGT 60.617 50.000 0.00 0.00 0.00 4.40
2945 3118 8.646356 GCATCTATCTAGTTCGAATCAATCTTG 58.354 37.037 0.00 0.00 0.00 3.02
3084 3257 1.153289 CTCCAAGTATGCTGGCGCT 60.153 57.895 7.64 0.00 36.97 5.92
3099 3272 1.302033 CGCTGAGTTCAAGGGTGCT 60.302 57.895 0.00 0.00 0.00 4.40
3105 3278 0.773644 AGTTCAAGGGTGCTGATGGT 59.226 50.000 0.00 0.00 0.00 3.55
3192 3365 2.038269 GGCGCGGTTTTCCTGATCA 61.038 57.895 8.83 0.00 37.95 2.92
3312 3486 3.604582 ACTCCTGCATTCTACTCTTTGC 58.395 45.455 0.00 0.00 35.67 3.68
3374 3548 2.721274 TTACGAATCGACGGTCCAAA 57.279 45.000 10.55 0.00 37.61 3.28
3375 3549 2.267188 TACGAATCGACGGTCCAAAG 57.733 50.000 10.55 0.00 37.61 2.77
3376 3550 0.599558 ACGAATCGACGGTCCAAAGA 59.400 50.000 10.55 0.00 37.61 2.52
3377 3551 1.203994 ACGAATCGACGGTCCAAAGAT 59.796 47.619 10.55 0.00 37.61 2.40
3378 3552 1.852895 CGAATCGACGGTCCAAAGATC 59.147 52.381 0.00 0.00 0.00 2.75
3379 3553 2.479730 CGAATCGACGGTCCAAAGATCT 60.480 50.000 0.00 0.00 0.00 2.75
3380 3554 3.522553 GAATCGACGGTCCAAAGATCTT 58.477 45.455 0.88 0.88 0.00 2.40
3381 3555 4.679662 GAATCGACGGTCCAAAGATCTTA 58.320 43.478 8.75 0.00 0.00 2.10
3384 3558 5.179045 TCGACGGTCCAAAGATCTTATAC 57.821 43.478 8.75 7.24 0.00 1.47
3479 3653 7.534723 TTGGGGTAGATGTATGTAGTATGTC 57.465 40.000 0.00 0.00 0.00 3.06
3501 3680 5.938125 GTCTGTAGATGCCCTTACAAGAAAA 59.062 40.000 0.00 0.00 0.00 2.29
3536 3741 1.508632 TTGCTGACAGCTACGGAAAC 58.491 50.000 26.94 0.00 42.97 2.78
3571 3776 4.523943 TCAATCAGGTCCTCAAAACATTGG 59.476 41.667 0.00 0.00 0.00 3.16
3593 3798 4.462508 CACTCTTGCACCTCAGATCTTA 57.537 45.455 0.00 0.00 0.00 2.10
3600 3805 2.605823 GCACCTCAGATCTTATCCGTCG 60.606 54.545 0.00 0.00 0.00 5.12
3606 3811 4.316645 TCAGATCTTATCCGTCGGTAGAG 58.683 47.826 11.88 7.59 0.00 2.43
3607 3812 4.066490 CAGATCTTATCCGTCGGTAGAGT 58.934 47.826 11.88 2.67 0.00 3.24
3608 3813 4.066490 AGATCTTATCCGTCGGTAGAGTG 58.934 47.826 11.88 0.00 0.00 3.51
3612 3817 1.390565 ATCCGTCGGTAGAGTGGAAG 58.609 55.000 11.88 0.00 36.20 3.46
3613 3818 0.325933 TCCGTCGGTAGAGTGGAAGA 59.674 55.000 11.88 0.00 31.42 2.87
3614 3819 0.450983 CCGTCGGTAGAGTGGAAGAC 59.549 60.000 2.08 0.00 0.00 3.01
3615 3820 1.162698 CGTCGGTAGAGTGGAAGACA 58.837 55.000 0.00 0.00 0.00 3.41
3637 3844 5.107824 CACAGGTGTCTCAGATCAGTATTG 58.892 45.833 0.00 0.00 0.00 1.90
3638 3845 5.019470 ACAGGTGTCTCAGATCAGTATTGA 58.981 41.667 0.00 0.00 37.81 2.57
3641 3848 3.794028 GTGTCTCAGATCAGTATTGACGC 59.206 47.826 0.00 0.00 35.83 5.19
3650 3857 1.585668 CAGTATTGACGCTCAAGCTCG 59.414 52.381 0.00 0.00 40.05 5.03
3657 3864 2.579201 GCTCAAGCTCGGCACCTA 59.421 61.111 0.00 0.00 38.21 3.08
3668 3876 2.566529 GCACCTAAGCCCGTTTGC 59.433 61.111 0.00 0.00 0.00 3.68
3684 3892 3.044305 GCAGTGTCCCACAGCGTC 61.044 66.667 0.00 0.00 37.16 5.19
3685 3893 2.734723 CAGTGTCCCACAGCGTCG 60.735 66.667 0.00 0.00 36.74 5.12
3687 3895 4.295119 GTGTCCCACAGCGTCGGT 62.295 66.667 0.00 0.00 34.08 4.69
3689 3897 1.980232 TGTCCCACAGCGTCGGTAT 60.980 57.895 0.00 0.00 0.00 2.73
3690 3898 1.217244 GTCCCACAGCGTCGGTATT 59.783 57.895 0.00 0.00 0.00 1.89
3691 3899 0.804933 GTCCCACAGCGTCGGTATTC 60.805 60.000 0.00 0.00 0.00 1.75
3694 3902 1.410737 CCACAGCGTCGGTATTCACG 61.411 60.000 0.00 0.00 39.09 4.35
3698 3906 4.777781 CGTCGGTATTCACGCTCA 57.222 55.556 0.00 0.00 0.00 4.26
3699 3907 3.024423 CGTCGGTATTCACGCTCAA 57.976 52.632 0.00 0.00 0.00 3.02
3700 3908 0.914551 CGTCGGTATTCACGCTCAAG 59.085 55.000 0.00 0.00 0.00 3.02
3702 3910 0.530744 TCGGTATTCACGCTCAAGCT 59.469 50.000 0.00 0.00 39.32 3.74
3703 3911 0.924090 CGGTATTCACGCTCAAGCTC 59.076 55.000 0.00 0.00 39.32 4.09
3704 3912 0.924090 GGTATTCACGCTCAAGCTCG 59.076 55.000 0.00 0.00 39.32 5.03
3705 3913 0.924090 GTATTCACGCTCAAGCTCGG 59.076 55.000 0.00 0.00 39.32 4.63
3706 3914 0.806102 TATTCACGCTCAAGCTCGGC 60.806 55.000 0.00 0.00 39.32 5.54
3708 3916 3.782244 CACGCTCAAGCTCGGCAC 61.782 66.667 0.00 0.00 39.32 5.01
3713 3921 1.447489 CTCAAGCTCGGCACCTCAG 60.447 63.158 0.00 0.00 0.00 3.35
3722 3930 2.594592 GCACCTCAGCCCGTTTGT 60.595 61.111 0.00 0.00 0.00 2.83
3723 3931 1.302192 GCACCTCAGCCCGTTTGTA 60.302 57.895 0.00 0.00 0.00 2.41
3724 3932 1.298859 GCACCTCAGCCCGTTTGTAG 61.299 60.000 0.00 0.00 0.00 2.74
3725 3933 0.034896 CACCTCAGCCCGTTTGTAGT 59.965 55.000 0.00 0.00 0.00 2.73
3726 3934 0.763035 ACCTCAGCCCGTTTGTAGTT 59.237 50.000 0.00 0.00 0.00 2.24
3789 4005 4.766373 ACCAATGTCTGCAAACATATCACA 59.234 37.500 5.99 0.00 38.92 3.58
3870 4086 0.645868 GACAGCTGCGATTACCGAAC 59.354 55.000 15.27 0.00 41.76 3.95
3890 4106 9.023967 ACCGAACACGTATAAATAAATCAGTAC 57.976 33.333 0.00 0.00 0.00 2.73
3904 4122 3.006672 AGTACACTGTTGTGCTGCC 57.993 52.632 0.00 0.00 45.97 4.85
3907 4125 2.548067 AGTACACTGTTGTGCTGCCTAC 60.548 50.000 0.00 0.00 45.97 3.18
3922 4140 3.886505 CTGCCTACAAGTACCCAAAACAA 59.113 43.478 0.00 0.00 0.00 2.83
3926 4144 5.391203 GCCTACAAGTACCCAAAACAATACG 60.391 44.000 0.00 0.00 0.00 3.06
3968 4189 3.307762 GCCAGTCATCAGTTTCTTACCCT 60.308 47.826 0.00 0.00 0.00 4.34
3978 4199 1.729586 TTCTTACCCTGGTCAGCTGT 58.270 50.000 14.67 0.00 0.00 4.40
3982 4203 0.114364 TACCCTGGTCAGCTGTGAGA 59.886 55.000 14.67 0.00 31.53 3.27
3990 4211 1.078567 CAGCTGTGAGAAGGGCCTC 60.079 63.158 6.46 0.00 0.00 4.70
4023 4244 2.993264 GCCTGCCAACACTGCCAT 60.993 61.111 0.00 0.00 0.00 4.40
4056 4277 1.609501 TGGAACTCCCTCCAGGACG 60.610 63.158 0.00 0.00 40.71 4.79
4060 4281 1.533469 AACTCCCTCCAGGACGAACG 61.533 60.000 0.00 0.00 40.93 3.95
4084 4305 3.685058 GGTGCGCTCTGTTGATTTATTC 58.315 45.455 9.73 0.00 0.00 1.75
4091 4312 8.026026 TGCGCTCTGTTGATTTATTCATTTTTA 58.974 29.630 9.73 0.00 33.34 1.52
4114 4335 5.862924 TCAGCTGTATTAACAAGAGTTGC 57.137 39.130 14.67 0.00 38.69 4.17
4115 4336 4.388773 TCAGCTGTATTAACAAGAGTTGCG 59.611 41.667 14.67 0.00 38.69 4.85
4116 4337 4.152402 CAGCTGTATTAACAAGAGTTGCGT 59.848 41.667 5.25 0.00 38.69 5.24
4117 4338 4.152402 AGCTGTATTAACAAGAGTTGCGTG 59.848 41.667 0.00 0.00 38.69 5.34
4118 4339 4.394795 CTGTATTAACAAGAGTTGCGTGC 58.605 43.478 0.00 0.00 38.69 5.34
4119 4340 4.062293 TGTATTAACAAGAGTTGCGTGCT 58.938 39.130 0.00 0.00 38.69 4.40
4120 4341 3.813529 ATTAACAAGAGTTGCGTGCTC 57.186 42.857 0.00 0.00 38.69 4.26
4121 4342 2.232756 TAACAAGAGTTGCGTGCTCA 57.767 45.000 5.09 0.00 38.69 4.26
4122 4343 1.597742 AACAAGAGTTGCGTGCTCAT 58.402 45.000 5.09 0.00 36.39 2.90
4123 4344 0.870393 ACAAGAGTTGCGTGCTCATG 59.130 50.000 5.09 5.53 37.60 3.07
4124 4345 0.870393 CAAGAGTTGCGTGCTCATGT 59.130 50.000 0.00 0.00 35.55 3.21
4125 4346 1.265095 CAAGAGTTGCGTGCTCATGTT 59.735 47.619 0.00 0.00 35.55 2.71
4126 4347 2.455674 AGAGTTGCGTGCTCATGTTA 57.544 45.000 0.00 0.00 35.55 2.41
4127 4348 2.069273 AGAGTTGCGTGCTCATGTTAC 58.931 47.619 0.00 0.00 35.55 2.50
4128 4349 2.069273 GAGTTGCGTGCTCATGTTACT 58.931 47.619 0.00 0.00 33.45 2.24
4129 4350 2.069273 AGTTGCGTGCTCATGTTACTC 58.931 47.619 0.00 0.00 0.00 2.59
4130 4351 2.069273 GTTGCGTGCTCATGTTACTCT 58.931 47.619 0.00 0.00 0.00 3.24
4131 4352 2.455674 TGCGTGCTCATGTTACTCTT 57.544 45.000 0.00 0.00 0.00 2.85
4132 4353 2.766313 TGCGTGCTCATGTTACTCTTT 58.234 42.857 0.00 0.00 0.00 2.52
4133 4354 3.138304 TGCGTGCTCATGTTACTCTTTT 58.862 40.909 0.00 0.00 0.00 2.27
4134 4355 3.186409 TGCGTGCTCATGTTACTCTTTTC 59.814 43.478 0.00 0.00 0.00 2.29
4135 4356 3.186409 GCGTGCTCATGTTACTCTTTTCA 59.814 43.478 0.00 0.00 0.00 2.69
4136 4357 4.702392 CGTGCTCATGTTACTCTTTTCAC 58.298 43.478 0.00 0.00 0.00 3.18
4137 4358 4.449068 CGTGCTCATGTTACTCTTTTCACT 59.551 41.667 0.00 0.00 0.00 3.41
4138 4359 5.633601 CGTGCTCATGTTACTCTTTTCACTA 59.366 40.000 0.00 0.00 0.00 2.74
4139 4360 6.400091 CGTGCTCATGTTACTCTTTTCACTAC 60.400 42.308 0.00 0.00 0.00 2.73
4140 4361 6.647067 GTGCTCATGTTACTCTTTTCACTACT 59.353 38.462 0.00 0.00 0.00 2.57
4141 4362 7.813148 GTGCTCATGTTACTCTTTTCACTACTA 59.187 37.037 0.00 0.00 0.00 1.82
4142 4363 8.531982 TGCTCATGTTACTCTTTTCACTACTAT 58.468 33.333 0.00 0.00 0.00 2.12
4143 4364 8.812329 GCTCATGTTACTCTTTTCACTACTATG 58.188 37.037 0.00 0.00 0.00 2.23
4144 4365 8.703604 TCATGTTACTCTTTTCACTACTATGC 57.296 34.615 0.00 0.00 0.00 3.14
4145 4366 8.531982 TCATGTTACTCTTTTCACTACTATGCT 58.468 33.333 0.00 0.00 0.00 3.79
4146 4367 8.812329 CATGTTACTCTTTTCACTACTATGCTC 58.188 37.037 0.00 0.00 0.00 4.26
4147 4368 8.123639 TGTTACTCTTTTCACTACTATGCTCT 57.876 34.615 0.00 0.00 0.00 4.09
4148 4369 8.029522 TGTTACTCTTTTCACTACTATGCTCTG 58.970 37.037 0.00 0.00 0.00 3.35
4149 4370 6.597832 ACTCTTTTCACTACTATGCTCTGT 57.402 37.500 0.00 0.00 0.00 3.41
4150 4371 6.998802 ACTCTTTTCACTACTATGCTCTGTT 58.001 36.000 0.00 0.00 0.00 3.16
4151 4372 6.870965 ACTCTTTTCACTACTATGCTCTGTTG 59.129 38.462 0.00 0.00 0.00 3.33
4152 4373 6.759272 TCTTTTCACTACTATGCTCTGTTGT 58.241 36.000 0.00 0.00 0.00 3.32
4153 4374 6.646653 TCTTTTCACTACTATGCTCTGTTGTG 59.353 38.462 10.00 10.00 39.80 3.33
4154 4375 5.722021 TTCACTACTATGCTCTGTTGTGA 57.278 39.130 13.04 13.04 43.21 3.58
4155 4376 5.921962 TCACTACTATGCTCTGTTGTGAT 57.078 39.130 13.04 0.00 41.33 3.06
4156 4377 5.654497 TCACTACTATGCTCTGTTGTGATG 58.346 41.667 13.04 0.00 41.33 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.599419 GGATTGACAACACAACGGCAC 60.599 52.381 0.00 0.00 32.50 5.01
10 11 0.665835 GGATTGACAACACAACGGCA 59.334 50.000 0.00 0.00 32.50 5.69
11 12 0.665835 TGGATTGACAACACAACGGC 59.334 50.000 0.00 0.00 32.50 5.68
12 13 3.004210 TGATTGGATTGACAACACAACGG 59.996 43.478 8.14 0.00 32.39 4.44
13 14 4.221926 TGATTGGATTGACAACACAACG 57.778 40.909 8.14 0.00 32.39 4.10
14 15 6.071952 ACCTATGATTGGATTGACAACACAAC 60.072 38.462 0.00 4.79 32.39 3.32
15 16 6.009589 ACCTATGATTGGATTGACAACACAA 58.990 36.000 0.00 8.34 32.39 3.33
16 17 5.569355 ACCTATGATTGGATTGACAACACA 58.431 37.500 0.00 0.00 32.39 3.72
17 18 6.324819 CAACCTATGATTGGATTGACAACAC 58.675 40.000 0.00 0.00 32.39 3.32
18 19 6.513806 CAACCTATGATTGGATTGACAACA 57.486 37.500 0.00 0.00 32.39 3.33
28 29 3.885297 GTCATGTCCCAACCTATGATTGG 59.115 47.826 0.00 0.00 45.36 3.16
29 30 4.336433 GTGTCATGTCCCAACCTATGATTG 59.664 45.833 0.00 0.00 32.76 2.67
30 31 4.526970 GTGTCATGTCCCAACCTATGATT 58.473 43.478 0.00 0.00 32.76 2.57
31 32 3.117888 GGTGTCATGTCCCAACCTATGAT 60.118 47.826 0.00 0.00 32.76 2.45
32 33 2.238646 GGTGTCATGTCCCAACCTATGA 59.761 50.000 0.00 0.00 0.00 2.15
33 34 2.239654 AGGTGTCATGTCCCAACCTATG 59.760 50.000 0.00 0.00 0.00 2.23
34 35 2.562296 AGGTGTCATGTCCCAACCTAT 58.438 47.619 0.00 0.00 0.00 2.57
35 36 2.038863 AGGTGTCATGTCCCAACCTA 57.961 50.000 0.00 0.00 0.00 3.08
36 37 1.149101 AAGGTGTCATGTCCCAACCT 58.851 50.000 0.00 0.00 0.00 3.50
37 38 1.202879 TCAAGGTGTCATGTCCCAACC 60.203 52.381 0.00 0.00 0.00 3.77
38 39 1.880027 GTCAAGGTGTCATGTCCCAAC 59.120 52.381 0.00 0.00 0.00 3.77
39 40 1.492599 TGTCAAGGTGTCATGTCCCAA 59.507 47.619 0.00 0.00 0.00 4.12
40 41 1.135960 TGTCAAGGTGTCATGTCCCA 58.864 50.000 0.00 0.00 0.00 4.37
41 42 2.270352 TTGTCAAGGTGTCATGTCCC 57.730 50.000 0.00 0.00 0.00 4.46
42 43 2.948979 TGTTTGTCAAGGTGTCATGTCC 59.051 45.455 0.00 0.00 0.00 4.02
43 44 4.275689 TGATGTTTGTCAAGGTGTCATGTC 59.724 41.667 0.00 0.00 0.00 3.06
44 45 4.206375 TGATGTTTGTCAAGGTGTCATGT 58.794 39.130 0.00 0.00 0.00 3.21
45 46 4.516321 TCTGATGTTTGTCAAGGTGTCATG 59.484 41.667 0.00 0.00 0.00 3.07
46 47 4.717877 TCTGATGTTTGTCAAGGTGTCAT 58.282 39.130 0.00 0.00 0.00 3.06
47 48 4.129380 CTCTGATGTTTGTCAAGGTGTCA 58.871 43.478 0.00 0.00 0.00 3.58
48 49 3.058639 GCTCTGATGTTTGTCAAGGTGTC 60.059 47.826 0.00 0.00 0.00 3.67
49 50 2.880890 GCTCTGATGTTTGTCAAGGTGT 59.119 45.455 0.00 0.00 0.00 4.16
50 51 2.880268 TGCTCTGATGTTTGTCAAGGTG 59.120 45.455 0.00 0.00 0.00 4.00
51 52 3.213206 TGCTCTGATGTTTGTCAAGGT 57.787 42.857 0.00 0.00 0.00 3.50
52 53 4.778534 AATGCTCTGATGTTTGTCAAGG 57.221 40.909 0.00 0.00 0.00 3.61
53 54 5.106436 TGCTAATGCTCTGATGTTTGTCAAG 60.106 40.000 0.00 0.00 40.48 3.02
54 55 4.761227 TGCTAATGCTCTGATGTTTGTCAA 59.239 37.500 0.00 0.00 40.48 3.18
55 56 4.325972 TGCTAATGCTCTGATGTTTGTCA 58.674 39.130 0.00 0.00 40.48 3.58
56 57 4.952262 TGCTAATGCTCTGATGTTTGTC 57.048 40.909 0.00 0.00 40.48 3.18
57 58 5.706916 CTTTGCTAATGCTCTGATGTTTGT 58.293 37.500 0.00 0.00 40.48 2.83
58 59 4.561606 GCTTTGCTAATGCTCTGATGTTTG 59.438 41.667 0.00 0.00 40.48 2.93
59 60 4.461781 AGCTTTGCTAATGCTCTGATGTTT 59.538 37.500 0.00 0.00 37.32 2.83
60 61 4.015084 AGCTTTGCTAATGCTCTGATGTT 58.985 39.130 0.00 0.00 37.32 2.71
61 62 3.618351 AGCTTTGCTAATGCTCTGATGT 58.382 40.909 0.00 0.00 37.32 3.06
62 63 4.095932 TGAAGCTTTGCTAATGCTCTGATG 59.904 41.667 0.00 0.00 40.56 3.07
63 64 4.267536 TGAAGCTTTGCTAATGCTCTGAT 58.732 39.130 0.00 0.00 40.56 2.90
64 65 3.678289 TGAAGCTTTGCTAATGCTCTGA 58.322 40.909 0.00 0.00 40.56 3.27
65 66 4.634184 ATGAAGCTTTGCTAATGCTCTG 57.366 40.909 0.00 0.00 40.56 3.35
66 67 4.142227 CCAATGAAGCTTTGCTAATGCTCT 60.142 41.667 0.00 2.61 40.56 4.09
67 68 4.110482 CCAATGAAGCTTTGCTAATGCTC 58.890 43.478 0.00 0.00 40.56 4.26
68 69 3.118884 CCCAATGAAGCTTTGCTAATGCT 60.119 43.478 0.00 0.00 42.92 3.79
69 70 3.192466 CCCAATGAAGCTTTGCTAATGC 58.808 45.455 0.00 0.00 38.25 3.56
70 71 3.788937 CCCCAATGAAGCTTTGCTAATG 58.211 45.455 0.00 0.00 38.25 1.90
71 72 2.169144 GCCCCAATGAAGCTTTGCTAAT 59.831 45.455 0.00 0.00 38.25 1.73
72 73 1.550072 GCCCCAATGAAGCTTTGCTAA 59.450 47.619 0.00 0.00 38.25 3.09
73 74 1.185315 GCCCCAATGAAGCTTTGCTA 58.815 50.000 0.00 0.00 38.25 3.49
74 75 1.547472 GGCCCCAATGAAGCTTTGCT 61.547 55.000 0.00 0.00 42.56 3.91
75 76 1.078918 GGCCCCAATGAAGCTTTGC 60.079 57.895 0.00 0.00 0.00 3.68
76 77 0.686224 TTGGCCCCAATGAAGCTTTG 59.314 50.000 0.00 0.00 0.00 2.77
77 78 0.978907 CTTGGCCCCAATGAAGCTTT 59.021 50.000 0.00 0.00 35.20 3.51
78 79 0.906282 CCTTGGCCCCAATGAAGCTT 60.906 55.000 0.00 0.00 35.20 3.74
79 80 1.305549 CCTTGGCCCCAATGAAGCT 60.306 57.895 0.00 0.00 35.20 3.74
80 81 2.361567 CCCTTGGCCCCAATGAAGC 61.362 63.158 0.00 0.00 35.20 3.86
81 82 1.686800 CCCCTTGGCCCCAATGAAG 60.687 63.158 0.00 0.00 35.20 3.02
82 83 2.449312 CCCCTTGGCCCCAATGAA 59.551 61.111 0.00 0.00 35.20 2.57
83 84 3.682409 CCCCCTTGGCCCCAATGA 61.682 66.667 0.00 0.00 35.20 2.57
109 110 2.529136 TGTGTGTGGGAGAGGGGG 60.529 66.667 0.00 0.00 0.00 5.40
110 111 2.750350 GTGTGTGTGGGAGAGGGG 59.250 66.667 0.00 0.00 0.00 4.79
111 112 2.750350 GGTGTGTGTGGGAGAGGG 59.250 66.667 0.00 0.00 0.00 4.30
112 113 2.750350 GGGTGTGTGTGGGAGAGG 59.250 66.667 0.00 0.00 0.00 3.69
113 114 2.750350 GGGGTGTGTGTGGGAGAG 59.250 66.667 0.00 0.00 0.00 3.20
114 115 3.238497 CGGGGTGTGTGTGGGAGA 61.238 66.667 0.00 0.00 0.00 3.71
124 125 4.966274 TACTGTGGGGCGGGGTGT 62.966 66.667 0.00 0.00 0.00 4.16
125 126 4.404098 GTACTGTGGGGCGGGGTG 62.404 72.222 0.00 0.00 0.00 4.61
126 127 4.651516 AGTACTGTGGGGCGGGGT 62.652 66.667 0.00 0.00 0.00 4.95
127 128 4.096003 CAGTACTGTGGGGCGGGG 62.096 72.222 15.06 0.00 0.00 5.73
128 129 1.046472 TATCAGTACTGTGGGGCGGG 61.046 60.000 21.99 0.00 0.00 6.13
129 130 1.048601 ATATCAGTACTGTGGGGCGG 58.951 55.000 21.99 0.00 0.00 6.13
130 131 2.910688 AATATCAGTACTGTGGGGCG 57.089 50.000 21.99 0.00 0.00 6.13
131 132 5.070580 ACTCTAAATATCAGTACTGTGGGGC 59.929 44.000 21.99 0.00 0.00 5.80
132 133 6.732896 ACTCTAAATATCAGTACTGTGGGG 57.267 41.667 21.99 7.38 0.00 4.96
133 134 9.303116 AGATACTCTAAATATCAGTACTGTGGG 57.697 37.037 21.99 7.72 32.37 4.61
207 208 0.992431 AGGGGCCAGCATCAGAAGAT 60.992 55.000 4.39 0.00 33.87 2.40
270 271 2.684374 TGCAGTTTAGTAGATCCGCGTA 59.316 45.455 4.92 0.00 0.00 4.42
272 273 2.120232 CTGCAGTTTAGTAGATCCGCG 58.880 52.381 5.25 0.00 0.00 6.46
293 294 1.632046 TTCCGTTTCGATTGCTCGCC 61.632 55.000 0.00 0.00 44.65 5.54
331 332 0.387112 CGGATCAGCTCAGATCGCTC 60.387 60.000 7.70 0.00 44.21 5.03
447 448 2.504274 TTTGCTCCGACTGACCCGT 61.504 57.895 0.00 0.00 0.00 5.28
450 451 0.599204 TTCGTTTGCTCCGACTGACC 60.599 55.000 0.00 0.00 33.41 4.02
456 457 1.952133 CGGTGTTCGTTTGCTCCGA 60.952 57.895 0.00 0.00 42.28 4.55
462 463 2.051345 GCAGGCGGTGTTCGTTTG 60.051 61.111 0.00 0.00 41.72 2.93
480 481 1.639298 CCCGCTTTTCTCTTGAGCCG 61.639 60.000 0.00 0.00 32.90 5.52
513 514 4.821589 CTTCAGGTCCGCGCCTCC 62.822 72.222 0.00 2.00 36.58 4.30
759 767 1.961277 GTCAACTCAGCCCGTGGTG 60.961 63.158 0.00 0.00 41.39 4.17
760 768 2.426023 GTCAACTCAGCCCGTGGT 59.574 61.111 0.00 0.00 0.00 4.16
761 769 2.738521 CGTCAACTCAGCCCGTGG 60.739 66.667 0.00 0.00 0.00 4.94
762 770 2.022129 GTCGTCAACTCAGCCCGTG 61.022 63.158 0.00 0.00 0.00 4.94
800 823 2.883574 CGTCAAGATTACGTGGGCTAA 58.116 47.619 0.00 0.00 35.66 3.09
820 843 3.122850 CATCTTTGGGCCCGATGC 58.877 61.111 20.99 0.00 40.16 3.91
839 864 4.838152 TTCTCATGGGCCGCGAGC 62.838 66.667 8.23 9.71 42.60 5.03
881 906 0.798776 GCGCTTTATCCATCCATCCG 59.201 55.000 0.00 0.00 0.00 4.18
882 907 1.808945 CAGCGCTTTATCCATCCATCC 59.191 52.381 7.50 0.00 0.00 3.51
902 927 0.033699 AGAAGCAAATGGGAGAGGGC 60.034 55.000 0.00 0.00 0.00 5.19
905 930 1.661341 CGGAGAAGCAAATGGGAGAG 58.339 55.000 0.00 0.00 0.00 3.20
906 931 0.392998 GCGGAGAAGCAAATGGGAGA 60.393 55.000 0.00 0.00 37.05 3.71
936 961 3.628832 AGCCTAGCCTAGAAGGAAGAT 57.371 47.619 0.00 0.00 37.67 2.40
937 962 3.181427 CCTAGCCTAGCCTAGAAGGAAGA 60.181 52.174 9.32 0.00 37.67 2.87
940 965 1.203075 GCCTAGCCTAGCCTAGAAGGA 60.203 57.143 9.32 0.00 37.67 3.36
941 966 1.203125 AGCCTAGCCTAGCCTAGAAGG 60.203 57.143 9.32 5.48 37.57 3.46
942 967 2.302587 AGCCTAGCCTAGCCTAGAAG 57.697 55.000 9.32 0.00 37.57 2.85
943 968 2.041891 CCTAGCCTAGCCTAGCCTAGAA 59.958 54.545 16.33 0.00 37.57 2.10
945 970 1.341581 CCCTAGCCTAGCCTAGCCTAG 60.342 61.905 9.32 9.32 34.74 3.02
946 971 0.705253 CCCTAGCCTAGCCTAGCCTA 59.295 60.000 2.10 0.00 34.74 3.93
947 972 1.373044 ACCCTAGCCTAGCCTAGCCT 61.373 60.000 2.10 0.00 34.74 4.58
948 973 0.472161 AACCCTAGCCTAGCCTAGCC 60.472 60.000 2.10 0.00 34.74 3.93
949 974 1.425694 AAACCCTAGCCTAGCCTAGC 58.574 55.000 2.10 0.00 34.74 3.42
950 975 3.770388 GGATAAACCCTAGCCTAGCCTAG 59.230 52.174 0.59 0.59 35.62 3.02
989 1017 4.778143 ACGCCATTGCCCGAGGAC 62.778 66.667 0.00 0.00 0.00 3.85
1215 1243 1.545428 GCAAGAGAACCACCATCACCA 60.545 52.381 0.00 0.00 0.00 4.17
1219 1247 1.648467 GGCGCAAGAGAACCACCATC 61.648 60.000 10.83 0.00 43.02 3.51
1220 1248 1.675641 GGCGCAAGAGAACCACCAT 60.676 57.895 10.83 0.00 43.02 3.55
1232 1260 0.536233 ACACATGTAACAGGGCGCAA 60.536 50.000 10.83 0.00 0.00 4.85
1254 1282 2.238646 TCCCACCTTATCAATTGCGAGT 59.761 45.455 0.00 0.00 0.00 4.18
1257 1285 2.355756 CAGTCCCACCTTATCAATTGCG 59.644 50.000 0.00 0.00 0.00 4.85
1265 1293 4.290942 CCTCTTCTACAGTCCCACCTTAT 58.709 47.826 0.00 0.00 0.00 1.73
1307 1335 3.186119 CAAATAAACGCATTCCGGCAAT 58.814 40.909 0.00 0.00 42.52 3.56
1318 1346 3.372660 TCCCAAACCACAAATAAACGC 57.627 42.857 0.00 0.00 0.00 4.84
1319 1347 3.677596 GCATCCCAAACCACAAATAAACG 59.322 43.478 0.00 0.00 0.00 3.60
1321 1349 3.574396 TCGCATCCCAAACCACAAATAAA 59.426 39.130 0.00 0.00 0.00 1.40
1326 1354 0.887247 CATCGCATCCCAAACCACAA 59.113 50.000 0.00 0.00 0.00 3.33
1334 1362 1.372872 CGTATCGCATCGCATCCCA 60.373 57.895 0.00 0.00 0.00 4.37
1335 1363 1.073216 CTCGTATCGCATCGCATCCC 61.073 60.000 0.00 0.00 0.00 3.85
1336 1364 0.387367 ACTCGTATCGCATCGCATCC 60.387 55.000 0.00 0.00 0.00 3.51
1344 1372 2.357952 ACTGCATCTAACTCGTATCGCA 59.642 45.455 0.00 0.00 0.00 5.10
1345 1373 2.721603 CACTGCATCTAACTCGTATCGC 59.278 50.000 0.00 0.00 0.00 4.58
1346 1374 2.721603 GCACTGCATCTAACTCGTATCG 59.278 50.000 0.00 0.00 0.00 2.92
1347 1375 3.487574 GTGCACTGCATCTAACTCGTATC 59.512 47.826 10.32 0.00 41.91 2.24
1350 1378 1.673033 GGTGCACTGCATCTAACTCGT 60.673 52.381 17.98 0.00 41.91 4.18
1351 1379 1.002366 GGTGCACTGCATCTAACTCG 58.998 55.000 17.98 0.00 41.91 4.18
1358 1386 2.514205 AAAACAAGGTGCACTGCATC 57.486 45.000 17.98 6.58 41.91 3.91
1359 1387 2.431782 AGAAAAACAAGGTGCACTGCAT 59.568 40.909 17.98 0.00 41.91 3.96
1360 1388 1.824230 AGAAAAACAAGGTGCACTGCA 59.176 42.857 17.98 0.00 35.60 4.41
1361 1389 2.195922 CAGAAAAACAAGGTGCACTGC 58.804 47.619 17.98 0.06 0.00 4.40
1362 1390 3.508744 ACAGAAAAACAAGGTGCACTG 57.491 42.857 17.98 10.79 0.00 3.66
1367 1395 7.282450 ACCTAAACTCTACAGAAAAACAAGGTG 59.718 37.037 0.00 0.00 30.24 4.00
1397 1425 8.303876 GCAGAGACATTTAAATTTCCTAACCAA 58.696 33.333 10.11 0.00 0.00 3.67
1398 1426 7.093945 GGCAGAGACATTTAAATTTCCTAACCA 60.094 37.037 10.11 0.00 0.00 3.67
1399 1427 7.258441 GGCAGAGACATTTAAATTTCCTAACC 58.742 38.462 10.11 8.51 0.00 2.85
1401 1429 6.657541 ACGGCAGAGACATTTAAATTTCCTAA 59.342 34.615 10.11 0.00 0.00 2.69
1403 1431 5.010282 ACGGCAGAGACATTTAAATTTCCT 58.990 37.500 10.11 5.47 0.00 3.36
1406 1434 4.522789 ACCACGGCAGAGACATTTAAATTT 59.477 37.500 0.00 0.00 0.00 1.82
1407 1435 4.079253 ACCACGGCAGAGACATTTAAATT 58.921 39.130 0.00 0.00 0.00 1.82
1408 1436 3.440173 CACCACGGCAGAGACATTTAAAT 59.560 43.478 0.00 0.00 0.00 1.40
1410 1438 2.224426 ACACCACGGCAGAGACATTTAA 60.224 45.455 0.00 0.00 0.00 1.52
1412 1440 0.108585 ACACCACGGCAGAGACATTT 59.891 50.000 0.00 0.00 0.00 2.32
1417 1445 1.681486 TTGACACACCACGGCAGAGA 61.681 55.000 0.00 0.00 0.00 3.10
1418 1446 1.227527 TTGACACACCACGGCAGAG 60.228 57.895 0.00 0.00 0.00 3.35
1419 1447 1.522806 GTTGACACACCACGGCAGA 60.523 57.895 0.00 0.00 0.00 4.26
1420 1448 1.523711 AGTTGACACACCACGGCAG 60.524 57.895 0.00 0.00 0.00 4.85
1421 1449 1.817520 CAGTTGACACACCACGGCA 60.818 57.895 0.00 0.00 0.00 5.69
1423 1451 1.891919 CCCAGTTGACACACCACGG 60.892 63.158 0.00 0.00 0.00 4.94
1424 1452 0.105224 TACCCAGTTGACACACCACG 59.895 55.000 0.00 0.00 0.00 4.94
1425 1453 2.038557 AGATACCCAGTTGACACACCAC 59.961 50.000 0.00 0.00 0.00 4.16
1426 1454 2.301870 GAGATACCCAGTTGACACACCA 59.698 50.000 0.00 0.00 0.00 4.17
1427 1455 2.567615 AGAGATACCCAGTTGACACACC 59.432 50.000 0.00 0.00 0.00 4.16
1428 1456 3.511934 AGAGAGATACCCAGTTGACACAC 59.488 47.826 0.00 0.00 0.00 3.82
1429 1457 3.779444 AGAGAGATACCCAGTTGACACA 58.221 45.455 0.00 0.00 0.00 3.72
1431 1459 4.402793 GCTTAGAGAGATACCCAGTTGACA 59.597 45.833 0.00 0.00 0.00 3.58
1433 1461 4.873010 AGCTTAGAGAGATACCCAGTTGA 58.127 43.478 0.00 0.00 0.00 3.18
1434 1462 5.355596 CAAGCTTAGAGAGATACCCAGTTG 58.644 45.833 0.00 0.00 0.00 3.16
1435 1463 4.141824 GCAAGCTTAGAGAGATACCCAGTT 60.142 45.833 0.00 0.00 0.00 3.16
1436 1464 3.386402 GCAAGCTTAGAGAGATACCCAGT 59.614 47.826 0.00 0.00 0.00 4.00
1438 1466 3.386078 CAGCAAGCTTAGAGAGATACCCA 59.614 47.826 0.00 0.00 0.00 4.51
1439 1467 3.801983 GCAGCAAGCTTAGAGAGATACCC 60.802 52.174 0.00 0.00 41.15 3.69
1440 1468 3.181471 TGCAGCAAGCTTAGAGAGATACC 60.181 47.826 0.00 0.00 45.94 2.73
1441 1469 4.052159 TGCAGCAAGCTTAGAGAGATAC 57.948 45.455 0.00 0.00 45.94 2.24
1442 1470 4.952071 ATGCAGCAAGCTTAGAGAGATA 57.048 40.909 0.00 0.00 45.94 1.98
1443 1471 3.842007 ATGCAGCAAGCTTAGAGAGAT 57.158 42.857 0.00 0.00 45.94 2.75
1450 1478 3.436704 GTCAACACTATGCAGCAAGCTTA 59.563 43.478 0.00 0.48 45.94 3.09
1451 1479 2.227388 GTCAACACTATGCAGCAAGCTT 59.773 45.455 0.00 0.00 45.94 3.74
1452 1480 1.808945 GTCAACACTATGCAGCAAGCT 59.191 47.619 0.00 0.00 45.94 3.74
1453 1481 1.464687 CGTCAACACTATGCAGCAAGC 60.465 52.381 0.00 0.00 45.96 4.01
1454 1482 2.068519 TCGTCAACACTATGCAGCAAG 58.931 47.619 0.00 0.82 0.00 4.01
1455 1483 2.162319 TCGTCAACACTATGCAGCAA 57.838 45.000 0.00 0.00 0.00 3.91
1456 1484 2.162319 TTCGTCAACACTATGCAGCA 57.838 45.000 0.00 0.00 0.00 4.41
1457 1485 3.747099 ATTTCGTCAACACTATGCAGC 57.253 42.857 0.00 0.00 0.00 5.25
1458 1486 4.853196 CCAAATTTCGTCAACACTATGCAG 59.147 41.667 0.00 0.00 0.00 4.41
1459 1487 4.320861 CCCAAATTTCGTCAACACTATGCA 60.321 41.667 0.00 0.00 0.00 3.96
1460 1488 4.083003 TCCCAAATTTCGTCAACACTATGC 60.083 41.667 0.00 0.00 0.00 3.14
1461 1489 5.621197 TCCCAAATTTCGTCAACACTATG 57.379 39.130 0.00 0.00 0.00 2.23
1462 1490 6.659242 AGAATCCCAAATTTCGTCAACACTAT 59.341 34.615 0.00 0.00 0.00 2.12
1463 1491 6.001460 AGAATCCCAAATTTCGTCAACACTA 58.999 36.000 0.00 0.00 0.00 2.74
1464 1492 4.827284 AGAATCCCAAATTTCGTCAACACT 59.173 37.500 0.00 0.00 0.00 3.55
1465 1493 5.121221 AGAATCCCAAATTTCGTCAACAC 57.879 39.130 0.00 0.00 0.00 3.32
1466 1494 6.001460 AGTAGAATCCCAAATTTCGTCAACA 58.999 36.000 0.00 0.00 0.00 3.33
1467 1495 6.314784 CAGTAGAATCCCAAATTTCGTCAAC 58.685 40.000 0.00 0.00 0.00 3.18
1468 1496 5.414454 CCAGTAGAATCCCAAATTTCGTCAA 59.586 40.000 0.00 0.00 0.00 3.18
1469 1497 4.941263 CCAGTAGAATCCCAAATTTCGTCA 59.059 41.667 0.00 0.00 0.00 4.35
1470 1498 5.183228 TCCAGTAGAATCCCAAATTTCGTC 58.817 41.667 0.00 0.00 0.00 4.20
1471 1499 5.174037 TCCAGTAGAATCCCAAATTTCGT 57.826 39.130 0.00 0.00 0.00 3.85
1472 1500 6.699575 AATCCAGTAGAATCCCAAATTTCG 57.300 37.500 0.00 0.00 0.00 3.46
1478 1506 9.586732 CCATTAATTAATCCAGTAGAATCCCAA 57.413 33.333 7.76 0.00 0.00 4.12
1479 1507 8.732854 ACCATTAATTAATCCAGTAGAATCCCA 58.267 33.333 7.76 0.00 0.00 4.37
1480 1508 9.232473 GACCATTAATTAATCCAGTAGAATCCC 57.768 37.037 7.76 0.00 0.00 3.85
1481 1509 9.793259 TGACCATTAATTAATCCAGTAGAATCC 57.207 33.333 7.76 0.00 0.00 3.01
1484 1512 9.832445 GTCTGACCATTAATTAATCCAGTAGAA 57.168 33.333 20.14 8.11 0.00 2.10
1485 1513 8.988060 TGTCTGACCATTAATTAATCCAGTAGA 58.012 33.333 20.14 13.31 0.00 2.59
1486 1514 9.265901 CTGTCTGACCATTAATTAATCCAGTAG 57.734 37.037 20.14 17.18 0.00 2.57
1487 1515 8.988060 TCTGTCTGACCATTAATTAATCCAGTA 58.012 33.333 20.14 14.19 0.00 2.74
1488 1516 7.861629 TCTGTCTGACCATTAATTAATCCAGT 58.138 34.615 20.14 13.85 0.00 4.00
1489 1517 7.041508 GCTCTGTCTGACCATTAATTAATCCAG 60.042 40.741 7.76 13.96 0.00 3.86
1490 1518 6.767902 GCTCTGTCTGACCATTAATTAATCCA 59.232 38.462 7.76 6.12 0.00 3.41
1491 1519 6.995091 AGCTCTGTCTGACCATTAATTAATCC 59.005 38.462 7.76 2.08 0.00 3.01
1492 1520 7.519649 GCAGCTCTGTCTGACCATTAATTAATC 60.520 40.741 7.76 0.00 36.19 1.75
1493 1521 6.261826 GCAGCTCTGTCTGACCATTAATTAAT 59.738 38.462 4.81 4.81 36.19 1.40
1494 1522 5.586243 GCAGCTCTGTCTGACCATTAATTAA 59.414 40.000 5.17 0.00 36.19 1.40
1495 1523 5.104776 AGCAGCTCTGTCTGACCATTAATTA 60.105 40.000 5.17 0.00 36.19 1.40
1496 1524 3.944015 GCAGCTCTGTCTGACCATTAATT 59.056 43.478 5.17 0.00 36.19 1.40
1497 1525 3.199508 AGCAGCTCTGTCTGACCATTAAT 59.800 43.478 5.17 0.00 36.19 1.40
1498 1526 2.568956 AGCAGCTCTGTCTGACCATTAA 59.431 45.455 5.17 0.00 36.19 1.40
1499 1527 2.182827 AGCAGCTCTGTCTGACCATTA 58.817 47.619 5.17 0.00 36.19 1.90
1500 1528 0.982704 AGCAGCTCTGTCTGACCATT 59.017 50.000 5.17 0.00 36.19 3.16
1501 1529 0.982704 AAGCAGCTCTGTCTGACCAT 59.017 50.000 5.17 0.00 36.19 3.55
1502 1530 1.632589 TAAGCAGCTCTGTCTGACCA 58.367 50.000 5.17 0.00 36.19 4.02
1503 1531 2.167281 TCATAAGCAGCTCTGTCTGACC 59.833 50.000 5.17 0.00 36.19 4.02
1504 1532 3.516981 TCATAAGCAGCTCTGTCTGAC 57.483 47.619 0.00 0.00 36.19 3.51
1505 1533 3.703052 TGATCATAAGCAGCTCTGTCTGA 59.297 43.478 0.00 0.00 36.19 3.27
1506 1534 4.056092 TGATCATAAGCAGCTCTGTCTG 57.944 45.455 0.00 0.00 37.15 3.51
1507 1535 4.750021 TTGATCATAAGCAGCTCTGTCT 57.250 40.909 0.00 0.00 0.00 3.41
1508 1536 7.488187 TTAATTGATCATAAGCAGCTCTGTC 57.512 36.000 0.00 0.00 0.00 3.51
1509 1537 7.870509 TTTAATTGATCATAAGCAGCTCTGT 57.129 32.000 0.00 0.00 0.00 3.41
1510 1538 8.350722 ACATTTAATTGATCATAAGCAGCTCTG 58.649 33.333 0.00 0.00 0.00 3.35
1511 1539 8.461249 ACATTTAATTGATCATAAGCAGCTCT 57.539 30.769 0.00 0.00 0.00 4.09
1512 1540 9.525409 AAACATTTAATTGATCATAAGCAGCTC 57.475 29.630 0.00 0.00 0.00 4.09
1513 1541 9.525409 GAAACATTTAATTGATCATAAGCAGCT 57.475 29.630 0.00 0.00 0.00 4.24
1514 1542 9.304731 TGAAACATTTAATTGATCATAAGCAGC 57.695 29.630 0.00 0.00 0.00 5.25
1531 1559 8.472413 CCTCATAGTCCATTTCATGAAACATTT 58.528 33.333 22.71 4.59 32.51 2.32
1532 1560 7.616935 ACCTCATAGTCCATTTCATGAAACATT 59.383 33.333 22.71 4.97 32.51 2.71
1533 1561 7.121382 ACCTCATAGTCCATTTCATGAAACAT 58.879 34.615 22.71 5.74 32.51 2.71
1534 1562 6.484288 ACCTCATAGTCCATTTCATGAAACA 58.516 36.000 22.71 7.54 32.51 2.83
1535 1563 7.396540 AACCTCATAGTCCATTTCATGAAAC 57.603 36.000 22.71 11.17 32.51 2.78
1536 1564 7.890127 AGAAACCTCATAGTCCATTTCATGAAA 59.110 33.333 22.52 22.52 34.46 2.69
1537 1565 7.405292 AGAAACCTCATAGTCCATTTCATGAA 58.595 34.615 3.38 3.38 0.00 2.57
1538 1566 6.962182 AGAAACCTCATAGTCCATTTCATGA 58.038 36.000 0.00 0.00 0.00 3.07
1539 1567 6.018425 CGAGAAACCTCATAGTCCATTTCATG 60.018 42.308 0.00 0.00 0.00 3.07
1540 1568 6.051717 CGAGAAACCTCATAGTCCATTTCAT 58.948 40.000 0.00 0.00 0.00 2.57
1541 1569 5.186992 TCGAGAAACCTCATAGTCCATTTCA 59.813 40.000 0.00 0.00 0.00 2.69
1542 1570 5.520649 GTCGAGAAACCTCATAGTCCATTTC 59.479 44.000 0.00 0.00 0.00 2.17
1543 1571 5.420409 GTCGAGAAACCTCATAGTCCATTT 58.580 41.667 0.00 0.00 0.00 2.32
1544 1572 4.440250 CGTCGAGAAACCTCATAGTCCATT 60.440 45.833 0.00 0.00 0.00 3.16
1545 1573 3.066900 CGTCGAGAAACCTCATAGTCCAT 59.933 47.826 0.00 0.00 0.00 3.41
1546 1574 2.422479 CGTCGAGAAACCTCATAGTCCA 59.578 50.000 0.00 0.00 0.00 4.02
1547 1575 2.422832 ACGTCGAGAAACCTCATAGTCC 59.577 50.000 0.00 0.00 0.00 3.85
1548 1576 3.126514 TGACGTCGAGAAACCTCATAGTC 59.873 47.826 11.62 0.00 32.45 2.59
1549 1577 3.079578 TGACGTCGAGAAACCTCATAGT 58.920 45.455 11.62 0.00 0.00 2.12
1550 1578 3.127203 ACTGACGTCGAGAAACCTCATAG 59.873 47.826 17.99 5.76 0.00 2.23
1551 1579 3.079578 ACTGACGTCGAGAAACCTCATA 58.920 45.455 17.99 0.00 0.00 2.15
1552 1580 1.887198 ACTGACGTCGAGAAACCTCAT 59.113 47.619 17.99 0.00 0.00 2.90
1553 1581 1.315690 ACTGACGTCGAGAAACCTCA 58.684 50.000 17.99 0.00 0.00 3.86
1554 1582 2.418983 AACTGACGTCGAGAAACCTC 57.581 50.000 17.99 0.00 0.00 3.85
1555 1583 2.864343 CAAAACTGACGTCGAGAAACCT 59.136 45.455 17.99 0.00 0.00 3.50
1556 1584 2.033151 CCAAAACTGACGTCGAGAAACC 60.033 50.000 17.99 0.00 0.00 3.27
1557 1585 2.606272 ACCAAAACTGACGTCGAGAAAC 59.394 45.455 17.99 0.00 0.00 2.78
1558 1586 2.896168 ACCAAAACTGACGTCGAGAAA 58.104 42.857 17.99 0.00 0.00 2.52
1559 1587 2.589798 ACCAAAACTGACGTCGAGAA 57.410 45.000 17.99 0.00 0.00 2.87
1560 1588 2.159212 TCAACCAAAACTGACGTCGAGA 60.159 45.455 17.99 0.00 0.00 4.04
1563 1591 3.602390 ATTCAACCAAAACTGACGTCG 57.398 42.857 11.62 8.41 0.00 5.12
1579 1607 1.134907 GCTCTCCGGTCGGTTAATTCA 60.135 52.381 9.36 0.00 36.47 2.57
1581 1609 1.134788 CAGCTCTCCGGTCGGTTAATT 60.135 52.381 9.36 0.00 36.47 1.40
1588 1616 0.319555 TCAAAACAGCTCTCCGGTCG 60.320 55.000 0.00 0.00 0.00 4.79
1590 1618 0.603975 GCTCAAAACAGCTCTCCGGT 60.604 55.000 0.00 0.00 36.38 5.28
1592 1620 1.069636 GTTGCTCAAAACAGCTCTCCG 60.070 52.381 0.00 0.00 40.39 4.63
1594 1622 1.949525 TGGTTGCTCAAAACAGCTCTC 59.050 47.619 0.00 0.00 40.39 3.20
1595 1623 1.952296 CTGGTTGCTCAAAACAGCTCT 59.048 47.619 0.00 0.00 46.32 4.09
1596 1624 2.412421 CTGGTTGCTCAAAACAGCTC 57.588 50.000 0.00 0.00 46.32 4.09
1600 1628 2.560542 ACACAACTGGTTGCTCAAAACA 59.439 40.909 12.65 0.00 44.03 2.83
1601 1629 3.179048 GACACAACTGGTTGCTCAAAAC 58.821 45.455 12.65 0.00 44.03 2.43
1605 1633 2.221169 GATGACACAACTGGTTGCTCA 58.779 47.619 12.65 13.02 44.03 4.26
1606 1634 2.221169 TGATGACACAACTGGTTGCTC 58.779 47.619 12.65 8.54 44.03 4.26
1607 1635 2.346766 TGATGACACAACTGGTTGCT 57.653 45.000 12.65 0.00 44.03 3.91
1608 1636 3.435105 TTTGATGACACAACTGGTTGC 57.565 42.857 12.65 0.00 44.03 4.17
1609 1637 5.185668 TCATTTGATGACACAACTGGTTG 57.814 39.130 11.35 11.35 39.26 3.77
1610 1638 5.360714 AGTTCATTTGATGACACAACTGGTT 59.639 36.000 0.00 0.00 39.39 3.67
1612 1640 5.443185 AGTTCATTTGATGACACAACTGG 57.557 39.130 0.00 0.00 39.39 4.00
1630 1662 3.536570 GGAGCATTCAACCTCCTAGTTC 58.463 50.000 0.00 0.00 43.42 3.01
1631 1663 2.239907 GGGAGCATTCAACCTCCTAGTT 59.760 50.000 6.64 0.00 45.54 2.24
1636 1668 1.034292 GCTGGGAGCATTCAACCTCC 61.034 60.000 0.00 0.00 45.52 4.30
1637 1669 2.486796 GCTGGGAGCATTCAACCTC 58.513 57.895 0.00 0.00 41.89 3.85
1647 1679 4.128925 TCGATATATTGATGCTGGGAGC 57.871 45.455 0.00 0.00 42.82 4.70
1648 1680 6.093219 CCTTTTCGATATATTGATGCTGGGAG 59.907 42.308 3.40 0.00 0.00 4.30
1649 1681 5.939883 CCTTTTCGATATATTGATGCTGGGA 59.060 40.000 3.40 0.00 0.00 4.37
1650 1682 5.939883 TCCTTTTCGATATATTGATGCTGGG 59.060 40.000 3.40 3.47 0.00 4.45
1651 1683 6.402983 GCTCCTTTTCGATATATTGATGCTGG 60.403 42.308 3.40 4.94 0.00 4.85
1652 1684 6.402983 GGCTCCTTTTCGATATATTGATGCTG 60.403 42.308 3.40 0.00 0.00 4.41
1654 1686 5.163713 GGGCTCCTTTTCGATATATTGATGC 60.164 44.000 3.40 2.91 0.00 3.91
1665 1703 1.882352 GCTTTCTGGGCTCCTTTTCGA 60.882 52.381 0.00 0.00 0.00 3.71
1672 1710 2.019984 CATAACTGCTTTCTGGGCTCC 58.980 52.381 0.00 0.00 0.00 4.70
1676 1714 5.712152 AAGAAACATAACTGCTTTCTGGG 57.288 39.130 0.00 0.00 35.16 4.45
1681 1719 5.523552 GCCACAAAAGAAACATAACTGCTTT 59.476 36.000 0.00 0.00 0.00 3.51
1710 1748 0.922032 GCTCGACTAAAACGCTAGGC 59.078 55.000 0.00 0.00 0.00 3.93
1712 1750 2.097791 AGAGGCTCGACTAAAACGCTAG 59.902 50.000 9.22 0.00 0.00 3.42
1781 1819 0.322975 ACTGCAGCAGAGTAACAGGG 59.677 55.000 29.70 0.00 35.18 4.45
1794 1836 0.318360 TTGACCGTCGTGTACTGCAG 60.318 55.000 13.48 13.48 0.00 4.41
1883 1925 4.503296 GGTTTAGACTGAGCAGTTGAAGGA 60.503 45.833 4.42 0.00 42.66 3.36
1895 1937 3.574396 CACCACTCTGAGGTTTAGACTGA 59.426 47.826 9.85 0.00 37.23 3.41
1926 1968 1.978580 GGTTCTTCCCTCTCCAACAGA 59.021 52.381 0.00 0.00 0.00 3.41
1994 2036 7.952671 TCTACTCACAAGACTAACAAACTGAT 58.047 34.615 0.00 0.00 0.00 2.90
2083 2127 0.996727 CAAACAGGTAACGCAAGCGC 60.997 55.000 15.09 0.00 44.19 5.92
2085 2129 0.948678 TCCAAACAGGTAACGCAAGC 59.051 50.000 0.00 0.00 46.39 4.01
2090 2134 3.570550 TCCCAAAATCCAAACAGGTAACG 59.429 43.478 0.00 0.00 46.39 3.18
2107 2151 3.066064 GCACAACATGCGTAATATCCCAA 59.934 43.478 0.00 0.00 46.55 4.12
2109 2153 3.268013 GCACAACATGCGTAATATCCC 57.732 47.619 0.00 0.00 46.55 3.85
2186 2231 8.962884 AATATTGTAGCACACTGACATATTGA 57.037 30.769 0.00 0.00 0.00 2.57
2192 2237 7.555965 ACTCATAATATTGTAGCACACTGACA 58.444 34.615 0.00 0.00 0.00 3.58
2199 2245 9.765795 AAAGTCCTACTCATAATATTGTAGCAC 57.234 33.333 0.00 0.00 33.20 4.40
2226 2272 8.177119 TGCTTTTGACTGGATTTGTTATAACT 57.823 30.769 16.33 0.00 0.00 2.24
2275 2322 5.714047 AGAATGTAAAAAGCTAAGGCAAGC 58.286 37.500 3.86 3.86 43.11 4.01
2285 2332 9.337091 TGCGTAAAATTCTAGAATGTAAAAAGC 57.663 29.630 18.61 16.66 0.00 3.51
2292 2339 9.935682 CATAACATGCGTAAAATTCTAGAATGT 57.064 29.630 18.61 10.66 0.00 2.71
2311 2358 5.653769 AGCAGATACAAAACTGGCATAACAT 59.346 36.000 0.00 0.00 35.05 2.71
2325 2372 8.531982 AGAGATGTAGTAACAAAGCAGATACAA 58.468 33.333 0.00 0.00 39.58 2.41
2329 2376 7.763528 CAGAAGAGATGTAGTAACAAAGCAGAT 59.236 37.037 0.00 0.00 39.58 2.90
2334 2381 6.402222 AGGCAGAAGAGATGTAGTAACAAAG 58.598 40.000 0.00 0.00 39.58 2.77
2338 2385 7.548967 ACTAAAGGCAGAAGAGATGTAGTAAC 58.451 38.462 0.00 0.00 0.00 2.50
2348 2401 6.650807 TGTATTGACAACTAAAGGCAGAAGAG 59.349 38.462 0.00 0.00 30.68 2.85
2598 2653 8.291888 TGCACACAATAAATGTATGTGAAAAC 57.708 30.769 11.66 0.03 41.46 2.43
2599 2654 9.138062 GATGCACACAATAAATGTATGTGAAAA 57.862 29.630 11.66 0.00 41.46 2.29
2621 2792 8.327941 ACATATATGTTGATGTAACCAGATGC 57.672 34.615 12.75 0.00 37.90 3.91
2643 2814 0.952497 CAGCGCACAGTCCAAGACAT 60.952 55.000 11.47 0.00 34.60 3.06
2644 2815 1.595109 CAGCGCACAGTCCAAGACA 60.595 57.895 11.47 0.00 34.60 3.41
2673 2844 5.353394 AACCTAAGACAGAAACAGACACA 57.647 39.130 0.00 0.00 0.00 3.72
2700 2871 7.267128 TGGTTATTATAACAAGATTCGACGGT 58.733 34.615 15.80 0.00 0.00 4.83
2723 2894 3.057315 ACAGGACGAAAAGCATGAAATGG 60.057 43.478 0.00 0.00 46.86 3.16
2859 3030 5.590259 ACATAGGCACCATAGACATCAAAAC 59.410 40.000 0.00 0.00 0.00 2.43
2874 3045 2.704572 ACAGCTCAGAAACATAGGCAC 58.295 47.619 0.00 0.00 0.00 5.01
2894 3065 2.613474 GGTAGTTGCAACATGACCCGTA 60.613 50.000 30.11 9.38 0.00 4.02
2945 3118 8.744680 AAATGAACATGGCATTAGCTCAAAAGC 61.745 37.037 14.09 0.00 40.64 3.51
3004 3177 1.757118 CTTGCCTTCCTCGTCCAGATA 59.243 52.381 0.00 0.00 0.00 1.98
3084 3257 1.271543 CCATCAGCACCCTTGAACTCA 60.272 52.381 0.00 0.00 0.00 3.41
3099 3272 5.181056 CAGCACAATGTAGTTTGTACCATCA 59.819 40.000 0.00 0.00 37.73 3.07
3105 3278 4.202419 ACCCTCAGCACAATGTAGTTTGTA 60.202 41.667 0.00 0.00 37.73 2.41
3117 3290 1.195115 GGTCAGATACCCTCAGCACA 58.805 55.000 0.00 0.00 43.16 4.57
3192 3365 8.428852 AGTTTAAGTTGCCTTTGGAACATTTAT 58.571 29.630 0.00 0.00 39.30 1.40
3312 3486 0.889186 ACTAACAACCTTGGCTGGCG 60.889 55.000 0.00 0.00 0.00 5.69
3340 3514 5.542779 GATTCGTAATCAGAGTGGGCTAAT 58.457 41.667 0.00 0.00 37.83 1.73
3345 3519 3.372954 GTCGATTCGTAATCAGAGTGGG 58.627 50.000 5.89 0.00 37.78 4.61
3346 3520 3.036633 CGTCGATTCGTAATCAGAGTGG 58.963 50.000 5.89 0.00 37.78 4.00
3479 3653 6.206634 TGTTTTTCTTGTAAGGGCATCTACAG 59.793 38.462 0.00 0.00 0.00 2.74
3501 3680 3.636300 TCAGCAATAGTTGTGCCTTTGTT 59.364 39.130 0.00 0.00 43.27 2.83
3536 3741 3.021695 ACCTGATTGATGACCAGCAATG 58.978 45.455 16.85 6.71 46.10 2.82
3581 3786 2.231529 CCGACGGATAAGATCTGAGGT 58.768 52.381 8.64 0.00 39.01 3.85
3586 3791 4.066490 CACTCTACCGACGGATAAGATCT 58.934 47.826 23.38 5.70 0.00 2.75
3593 3798 1.064906 TCTTCCACTCTACCGACGGAT 60.065 52.381 23.38 7.58 0.00 4.18
3600 3805 2.028930 CACCTGTGTCTTCCACTCTACC 60.029 54.545 0.00 0.00 44.81 3.18
3613 3818 9.399099 GTCAATACTGATCTGAGACACCTGTGT 62.399 44.444 6.60 1.88 39.25 3.72
3614 3819 4.998671 ATACTGATCTGAGACACCTGTG 57.001 45.455 6.60 0.00 0.00 3.66
3615 3820 5.019470 TCAATACTGATCTGAGACACCTGT 58.981 41.667 6.60 0.00 0.00 4.00
3616 3821 5.347342 GTCAATACTGATCTGAGACACCTG 58.653 45.833 6.60 0.00 33.05 4.00
3617 3822 4.097135 CGTCAATACTGATCTGAGACACCT 59.903 45.833 6.60 0.00 33.05 4.00
3618 3823 4.355437 CGTCAATACTGATCTGAGACACC 58.645 47.826 6.60 0.00 33.05 4.16
3641 3848 1.086634 GCTTAGGTGCCGAGCTTGAG 61.087 60.000 1.22 0.00 33.72 3.02
3657 3864 2.193536 GGACACTGCAAACGGGCTT 61.194 57.895 0.00 0.00 34.04 4.35
3683 3891 3.044809 GCTTGAGCGTGAATACCGA 57.955 52.632 0.00 0.00 0.00 4.69
3694 3902 2.817396 GAGGTGCCGAGCTTGAGC 60.817 66.667 1.22 4.99 42.49 4.26
3695 3903 1.447489 CTGAGGTGCCGAGCTTGAG 60.447 63.158 1.22 0.00 0.00 3.02
3697 3905 3.123620 GCTGAGGTGCCGAGCTTG 61.124 66.667 0.00 0.00 0.00 4.01
3698 3906 4.400961 GGCTGAGGTGCCGAGCTT 62.401 66.667 12.73 0.00 43.74 3.74
3705 3913 1.298859 CTACAAACGGGCTGAGGTGC 61.299 60.000 0.00 0.00 0.00 5.01
3706 3914 0.034896 ACTACAAACGGGCTGAGGTG 59.965 55.000 0.00 0.00 0.00 4.00
3708 3916 1.804748 GAAACTACAAACGGGCTGAGG 59.195 52.381 0.00 0.00 0.00 3.86
3709 3917 1.804748 GGAAACTACAAACGGGCTGAG 59.195 52.381 0.00 0.00 0.00 3.35
3713 3921 0.594602 GTGGGAAACTACAAACGGGC 59.405 55.000 0.00 0.00 42.23 6.13
3721 3929 0.038892 TCGACGCTGTGGGAAACTAC 60.039 55.000 0.00 0.00 43.12 2.73
3722 3930 0.675083 TTCGACGCTGTGGGAAACTA 59.325 50.000 0.00 0.00 0.00 2.24
3723 3931 0.179067 TTTCGACGCTGTGGGAAACT 60.179 50.000 5.86 0.00 0.00 2.66
3724 3932 0.872388 ATTTCGACGCTGTGGGAAAC 59.128 50.000 10.48 0.00 31.88 2.78
3725 3933 1.153353 GATTTCGACGCTGTGGGAAA 58.847 50.000 10.61 10.61 33.43 3.13
3726 3934 0.034198 TGATTTCGACGCTGTGGGAA 59.966 50.000 0.00 0.00 0.00 3.97
3853 4069 0.370273 GTGTTCGGTAATCGCAGCTG 59.630 55.000 10.11 10.11 39.05 4.24
3887 4103 1.798813 GTAGGCAGCACAACAGTGTAC 59.201 52.381 0.00 0.00 35.72 2.90
3890 4106 1.265095 CTTGTAGGCAGCACAACAGTG 59.735 52.381 0.00 0.00 32.64 3.66
3904 4122 5.179742 TGCGTATTGTTTTGGGTACTTGTAG 59.820 40.000 0.00 0.00 0.00 2.74
3907 4125 4.491234 TGCGTATTGTTTTGGGTACTTG 57.509 40.909 0.00 0.00 0.00 3.16
3922 4140 5.468540 TCCAGTCTATGCTAAATGCGTAT 57.531 39.130 0.00 0.00 46.63 3.06
3926 4144 3.251972 GGCTTCCAGTCTATGCTAAATGC 59.748 47.826 0.00 0.00 43.25 3.56
3951 4169 3.907474 TGACCAGGGTAAGAAACTGATGA 59.093 43.478 0.00 0.00 34.21 2.92
3968 4189 2.061220 CCCTTCTCACAGCTGACCA 58.939 57.895 23.35 2.01 0.00 4.02
3990 4211 2.203209 GCCCCAACTATGAGGGCG 60.203 66.667 3.09 0.00 46.35 6.13
4022 4243 3.837146 AGTTCCATCATCTCGCCATCTAT 59.163 43.478 0.00 0.00 0.00 1.98
4023 4244 3.234353 AGTTCCATCATCTCGCCATCTA 58.766 45.455 0.00 0.00 0.00 1.98
4091 4312 5.063944 CGCAACTCTTGTTAATACAGCTGAT 59.936 40.000 23.35 8.69 35.28 2.90
4096 4317 4.152402 AGCACGCAACTCTTGTTAATACAG 59.848 41.667 0.00 0.00 35.28 2.74
4097 4318 4.062293 AGCACGCAACTCTTGTTAATACA 58.938 39.130 0.00 0.00 34.60 2.29
4110 4331 2.069273 AGAGTAACATGAGCACGCAAC 58.931 47.619 0.00 0.00 0.00 4.17
4111 4332 2.455674 AGAGTAACATGAGCACGCAA 57.544 45.000 0.00 0.00 0.00 4.85
4112 4333 2.455674 AAGAGTAACATGAGCACGCA 57.544 45.000 0.00 0.00 0.00 5.24
4113 4334 3.186409 TGAAAAGAGTAACATGAGCACGC 59.814 43.478 0.00 0.00 0.00 5.34
4114 4335 4.449068 AGTGAAAAGAGTAACATGAGCACG 59.551 41.667 0.00 0.00 0.00 5.34
4115 4336 5.931441 AGTGAAAAGAGTAACATGAGCAC 57.069 39.130 0.00 0.00 0.00 4.40
4116 4337 6.759272 AGTAGTGAAAAGAGTAACATGAGCA 58.241 36.000 0.00 0.00 0.00 4.26
4117 4338 8.812329 CATAGTAGTGAAAAGAGTAACATGAGC 58.188 37.037 0.00 0.00 0.00 4.26
4118 4339 8.812329 GCATAGTAGTGAAAAGAGTAACATGAG 58.188 37.037 0.00 0.00 0.00 2.90
4119 4340 8.531982 AGCATAGTAGTGAAAAGAGTAACATGA 58.468 33.333 0.00 0.00 0.00 3.07
4120 4341 8.709386 AGCATAGTAGTGAAAAGAGTAACATG 57.291 34.615 0.00 0.00 0.00 3.21
4121 4342 8.754080 AGAGCATAGTAGTGAAAAGAGTAACAT 58.246 33.333 0.00 0.00 0.00 2.71
4122 4343 8.029522 CAGAGCATAGTAGTGAAAAGAGTAACA 58.970 37.037 0.00 0.00 0.00 2.41
4123 4344 8.030106 ACAGAGCATAGTAGTGAAAAGAGTAAC 58.970 37.037 0.00 0.00 0.00 2.50
4124 4345 8.123639 ACAGAGCATAGTAGTGAAAAGAGTAA 57.876 34.615 0.00 0.00 0.00 2.24
4125 4346 7.704578 ACAGAGCATAGTAGTGAAAAGAGTA 57.295 36.000 0.00 0.00 0.00 2.59
4126 4347 6.597832 ACAGAGCATAGTAGTGAAAAGAGT 57.402 37.500 0.00 0.00 0.00 3.24
4127 4348 6.870965 ACAACAGAGCATAGTAGTGAAAAGAG 59.129 38.462 0.00 0.00 0.00 2.85
4128 4349 6.646653 CACAACAGAGCATAGTAGTGAAAAGA 59.353 38.462 0.00 0.00 0.00 2.52
4129 4350 6.646653 TCACAACAGAGCATAGTAGTGAAAAG 59.353 38.462 0.00 0.00 32.46 2.27
4130 4351 6.521162 TCACAACAGAGCATAGTAGTGAAAA 58.479 36.000 0.00 0.00 32.46 2.29
4131 4352 6.096673 TCACAACAGAGCATAGTAGTGAAA 57.903 37.500 0.00 0.00 32.46 2.69
4132 4353 5.722021 TCACAACAGAGCATAGTAGTGAA 57.278 39.130 0.00 0.00 32.46 3.18
4133 4354 5.654497 CATCACAACAGAGCATAGTAGTGA 58.346 41.667 0.00 0.00 38.86 3.41
4134 4355 5.963140 CATCACAACAGAGCATAGTAGTG 57.037 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.