Multiple sequence alignment - TraesCS6A01G340200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G340200 chr6A 100.000 4199 0 0 1 4199 573476009 573480207 0.000000e+00 7755.0
1 TraesCS6A01G340200 chr6A 79.785 836 94 42 744 1537 439753837 439754639 4.780000e-149 538.0
2 TraesCS6A01G340200 chr6A 84.229 558 71 13 1876 2419 439755157 439755711 1.030000e-145 527.0
3 TraesCS6A01G340200 chr6D 89.738 1335 78 24 376 1690 428891694 428892989 0.000000e+00 1652.0
4 TraesCS6A01G340200 chr6D 92.914 875 41 11 3332 4199 428893789 428894649 0.000000e+00 1253.0
5 TraesCS6A01G340200 chr6D 80.479 835 85 41 744 1537 305608262 305609059 6.090000e-158 568.0
6 TraesCS6A01G340200 chr6D 82.542 653 82 19 1780 2419 305609503 305610136 2.850000e-151 545.0
7 TraesCS6A01G340200 chr6D 91.153 373 28 2 2745 3112 428893320 428893692 6.270000e-138 501.0
8 TraesCS6A01G340200 chr6D 88.462 286 14 5 2410 2679 428893038 428893320 1.130000e-85 327.0
9 TraesCS6A01G340200 chr6D 84.488 303 17 10 24 305 428891394 428891687 5.350000e-69 272.0
10 TraesCS6A01G340200 chr6D 90.411 73 7 0 3259 3331 428893690 428893762 3.460000e-16 97.1
11 TraesCS6A01G340200 chr6B 86.105 1281 91 39 2970 4199 645480117 645481361 0.000000e+00 1299.0
12 TraesCS6A01G340200 chr6B 89.521 773 51 8 1028 1778 645479354 645480118 0.000000e+00 952.0
13 TraesCS6A01G340200 chr6B 85.792 549 64 10 1882 2419 470920742 470920197 1.690000e-158 569.0
14 TraesCS6A01G340200 chr6B 83.192 589 60 21 765 1340 470922172 470921610 1.740000e-138 503.0
15 TraesCS6A01G340200 chr6B 87.658 316 37 2 1 314 645478549 645478864 2.390000e-97 366.0
16 TraesCS6A01G340200 chr6B 95.808 167 7 0 746 912 645479187 645479353 1.920000e-68 270.0
17 TraesCS6A01G340200 chr7A 78.746 287 28 21 1067 1340 559984565 559984831 1.210000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G340200 chr6A 573476009 573480207 4198 False 7755.000000 7755 100.000000 1 4199 1 chr6A.!!$F1 4198
1 TraesCS6A01G340200 chr6A 439753837 439755711 1874 False 532.500000 538 82.007000 744 2419 2 chr6A.!!$F2 1675
2 TraesCS6A01G340200 chr6D 428891394 428894649 3255 False 683.683333 1652 89.527667 24 4199 6 chr6D.!!$F2 4175
3 TraesCS6A01G340200 chr6D 305608262 305610136 1874 False 556.500000 568 81.510500 744 2419 2 chr6D.!!$F1 1675
4 TraesCS6A01G340200 chr6B 645478549 645481361 2812 False 721.750000 1299 89.773000 1 4199 4 chr6B.!!$F1 4198
5 TraesCS6A01G340200 chr6B 470920197 470922172 1975 True 536.000000 569 84.492000 765 2419 2 chr6B.!!$R1 1654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 365 0.390340 CTACACCTGATGCGTGCACT 60.390 55.000 16.19 0.00 34.45 4.40 F
342 366 0.670239 TACACCTGATGCGTGCACTG 60.670 55.000 16.19 9.73 34.45 3.66 F
696 751 0.676151 CAGCTCAGAAGAACTGGCCC 60.676 60.000 0.00 0.00 45.76 5.80 F
1151 1223 0.719465 CCTGCAACGTTCGGTATGTC 59.281 55.000 0.00 0.00 0.00 3.06 F
1265 1365 1.000060 GGTGCTTGCTTGATTGCTTGA 60.000 47.619 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1267 1367 0.038251 CCGTGCTAGTGAGACAAGCA 60.038 55.0 0.00 0.0 43.66 3.91 R
1268 1368 0.243907 TCCGTGCTAGTGAGACAAGC 59.756 55.0 0.00 0.0 36.77 4.01 R
2105 2657 0.465097 GGCACATCTATGGCAGCTGT 60.465 55.0 16.64 0.0 44.34 4.40 R
2871 3452 0.114364 TACCCTGGTCAGCTGTGAGA 59.886 55.0 14.67 0.0 31.53 3.27 R
3240 3889 0.325933 TCCGTCGGTAGAGTGGAAGA 59.674 55.0 11.88 0.0 31.42 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.300542 GCCTCAGCCTGATCTACGC 60.301 63.158 0.00 0.00 0.00 4.42
63 66 3.625897 CCGCCATGGATCCCGCTA 61.626 66.667 18.40 0.00 42.00 4.26
85 88 1.452145 GGCTAGCCACTCTCCTCTCG 61.452 65.000 29.33 0.00 35.81 4.04
89 92 4.200283 CCACTCTCCTCTCGCCGC 62.200 72.222 0.00 0.00 0.00 6.53
121 144 3.470888 CCCGCGTCTCCCCTGATT 61.471 66.667 4.92 0.00 0.00 2.57
124 147 1.079127 CGCGTCTCCCCTGATTGTT 60.079 57.895 0.00 0.00 0.00 2.83
178 201 2.122769 GCCCTCTACTCCTCCCCC 60.123 72.222 0.00 0.00 0.00 5.40
179 202 3.023045 GCCCTCTACTCCTCCCCCA 62.023 68.421 0.00 0.00 0.00 4.96
180 203 1.234529 CCCTCTACTCCTCCCCCAG 59.765 68.421 0.00 0.00 0.00 4.45
183 206 2.840102 CTACTCCTCCCCCAGCCG 60.840 72.222 0.00 0.00 0.00 5.52
276 299 1.825474 GCCACCTGCTACTCTCTGTTA 59.175 52.381 0.00 0.00 36.87 2.41
314 338 6.894682 TCTGATGGGTGCACTAATAACATTA 58.105 36.000 17.98 7.84 0.00 1.90
315 339 6.765989 TCTGATGGGTGCACTAATAACATTAC 59.234 38.462 17.98 0.00 0.00 1.89
317 341 5.180810 TGGGTGCACTAATAACATTACCA 57.819 39.130 17.98 7.87 0.00 3.25
318 342 4.944930 TGGGTGCACTAATAACATTACCAC 59.055 41.667 17.98 0.00 0.00 4.16
319 343 4.337274 GGGTGCACTAATAACATTACCACC 59.663 45.833 17.98 0.00 39.47 4.61
320 344 5.190677 GGTGCACTAATAACATTACCACCT 58.809 41.667 17.98 0.00 37.73 4.00
321 345 5.065988 GGTGCACTAATAACATTACCACCTG 59.934 44.000 17.98 0.00 37.73 4.00
322 346 4.638421 TGCACTAATAACATTACCACCTGC 59.362 41.667 0.00 0.00 0.00 4.85
323 347 4.881850 GCACTAATAACATTACCACCTGCT 59.118 41.667 0.00 0.00 0.00 4.24
324 348 6.053005 GCACTAATAACATTACCACCTGCTA 58.947 40.000 0.00 0.00 0.00 3.49
325 349 6.018180 GCACTAATAACATTACCACCTGCTAC 60.018 42.308 0.00 0.00 0.00 3.58
326 350 7.045416 CACTAATAACATTACCACCTGCTACA 58.955 38.462 0.00 0.00 0.00 2.74
327 351 7.011109 CACTAATAACATTACCACCTGCTACAC 59.989 40.741 0.00 0.00 0.00 2.90
328 352 2.781681 ACATTACCACCTGCTACACC 57.218 50.000 0.00 0.00 0.00 4.16
329 353 2.266279 ACATTACCACCTGCTACACCT 58.734 47.619 0.00 0.00 0.00 4.00
330 354 2.027192 ACATTACCACCTGCTACACCTG 60.027 50.000 0.00 0.00 0.00 4.00
331 355 2.018355 TTACCACCTGCTACACCTGA 57.982 50.000 0.00 0.00 0.00 3.86
332 356 2.247699 TACCACCTGCTACACCTGAT 57.752 50.000 0.00 0.00 0.00 2.90
333 357 0.615331 ACCACCTGCTACACCTGATG 59.385 55.000 0.00 0.00 0.00 3.07
334 358 0.745845 CCACCTGCTACACCTGATGC 60.746 60.000 0.00 0.00 0.00 3.91
335 359 1.086067 CACCTGCTACACCTGATGCG 61.086 60.000 0.00 0.00 0.00 4.73
336 360 1.219124 CCTGCTACACCTGATGCGT 59.781 57.895 0.00 0.00 0.00 5.24
337 361 1.086067 CCTGCTACACCTGATGCGTG 61.086 60.000 0.00 0.00 37.26 5.34
338 362 1.699656 CTGCTACACCTGATGCGTGC 61.700 60.000 0.00 0.00 34.45 5.34
339 363 1.741401 GCTACACCTGATGCGTGCA 60.741 57.895 0.00 0.00 34.45 4.57
340 364 1.970917 GCTACACCTGATGCGTGCAC 61.971 60.000 6.82 6.82 34.45 4.57
341 365 0.390340 CTACACCTGATGCGTGCACT 60.390 55.000 16.19 0.00 34.45 4.40
342 366 0.670239 TACACCTGATGCGTGCACTG 60.670 55.000 16.19 9.73 34.45 3.66
343 367 1.668793 CACCTGATGCGTGCACTGA 60.669 57.895 16.19 0.62 0.00 3.41
344 368 1.022982 CACCTGATGCGTGCACTGAT 61.023 55.000 16.19 6.21 0.00 2.90
345 369 1.022982 ACCTGATGCGTGCACTGATG 61.023 55.000 16.19 0.00 0.00 3.07
359 383 4.531659 CACTGATGCTATGATGTGTGTG 57.468 45.455 0.00 0.00 0.00 3.82
360 384 4.186159 CACTGATGCTATGATGTGTGTGA 58.814 43.478 0.00 0.00 0.00 3.58
361 385 4.814771 CACTGATGCTATGATGTGTGTGAT 59.185 41.667 0.00 0.00 0.00 3.06
362 386 4.814771 ACTGATGCTATGATGTGTGTGATG 59.185 41.667 0.00 0.00 0.00 3.07
363 387 3.562557 TGATGCTATGATGTGTGTGATGC 59.437 43.478 0.00 0.00 0.00 3.91
364 388 2.988570 TGCTATGATGTGTGTGATGCA 58.011 42.857 0.00 0.00 0.00 3.96
365 389 3.547746 TGCTATGATGTGTGTGATGCAT 58.452 40.909 0.00 0.00 0.00 3.96
366 390 3.314080 TGCTATGATGTGTGTGATGCATG 59.686 43.478 2.46 0.00 0.00 4.06
367 391 3.562557 GCTATGATGTGTGTGATGCATGA 59.437 43.478 2.46 0.00 0.00 3.07
368 392 4.319549 GCTATGATGTGTGTGATGCATGAG 60.320 45.833 2.46 0.00 0.00 2.90
369 393 3.062122 TGATGTGTGTGATGCATGAGT 57.938 42.857 2.46 0.00 0.00 3.41
370 394 4.205065 TGATGTGTGTGATGCATGAGTA 57.795 40.909 2.46 0.00 0.00 2.59
371 395 4.773013 TGATGTGTGTGATGCATGAGTAT 58.227 39.130 2.46 0.00 0.00 2.12
372 396 4.573201 TGATGTGTGTGATGCATGAGTATG 59.427 41.667 2.46 0.00 37.36 2.39
433 467 9.906660 TCTTTATTTCATTGTGTATTGGACAAC 57.093 29.630 0.00 0.00 40.66 3.32
434 468 9.689976 CTTTATTTCATTGTGTATTGGACAACA 57.310 29.630 0.00 0.00 40.66 3.33
488 540 5.855925 GTGAGCTCGTCTTGATGTATATGAG 59.144 44.000 9.64 0.00 0.00 2.90
490 542 3.923461 GCTCGTCTTGATGTATATGAGCC 59.077 47.826 0.00 0.00 41.19 4.70
536 590 1.000506 ACGGTCTTGAAAGCGAGCTTA 59.999 47.619 11.00 0.00 42.48 3.09
614 668 7.254932 GCATTGGACAGTAGGCTCTTTATTTAG 60.255 40.741 0.00 0.00 0.00 1.85
635 689 9.899226 ATTTAGTTGTGTATTCTCTTTTGCTTC 57.101 29.630 0.00 0.00 0.00 3.86
652 707 3.117046 GCTTCGTATCCTTGTGCTAGAC 58.883 50.000 0.00 0.00 0.00 2.59
680 735 2.279385 TTTTGCACAAGCCGCAGC 60.279 55.556 0.00 0.00 41.18 5.25
690 745 3.172919 GCCGCAGCTCAGAAGAAC 58.827 61.111 0.00 0.00 35.50 3.01
691 746 1.375268 GCCGCAGCTCAGAAGAACT 60.375 57.895 0.00 0.00 35.50 3.01
692 747 1.633852 GCCGCAGCTCAGAAGAACTG 61.634 60.000 0.00 0.00 46.97 3.16
693 748 1.018226 CCGCAGCTCAGAAGAACTGG 61.018 60.000 0.00 0.00 45.76 4.00
694 749 1.633852 CGCAGCTCAGAAGAACTGGC 61.634 60.000 0.00 0.00 45.76 4.85
695 750 1.304509 GCAGCTCAGAAGAACTGGCC 61.305 60.000 0.00 0.00 45.76 5.36
696 751 0.676151 CAGCTCAGAAGAACTGGCCC 60.676 60.000 0.00 0.00 45.76 5.80
697 752 0.839853 AGCTCAGAAGAACTGGCCCT 60.840 55.000 0.00 0.00 45.76 5.19
698 753 0.905357 GCTCAGAAGAACTGGCCCTA 59.095 55.000 0.00 0.00 45.76 3.53
699 754 1.279271 GCTCAGAAGAACTGGCCCTAA 59.721 52.381 0.00 0.00 45.76 2.69
700 755 2.937433 GCTCAGAAGAACTGGCCCTAAC 60.937 54.545 0.00 0.00 45.76 2.34
701 756 1.628846 TCAGAAGAACTGGCCCTAACC 59.371 52.381 0.00 0.00 45.76 2.85
702 757 1.351017 CAGAAGAACTGGCCCTAACCA 59.649 52.381 0.00 0.00 42.39 3.67
703 758 2.062636 AGAAGAACTGGCCCTAACCAA 58.937 47.619 0.00 0.00 39.86 3.67
704 759 2.649816 AGAAGAACTGGCCCTAACCAAT 59.350 45.455 0.00 0.00 39.86 3.16
734 789 0.768221 TTCTTCCTCAGTGGCCCTGT 60.768 55.000 17.55 0.00 42.19 4.00
959 1016 1.522569 GACAAGTAGCCCGCATCCT 59.477 57.895 0.00 0.00 0.00 3.24
982 1040 1.128188 GGCATCCCCTCCTATTCCGT 61.128 60.000 0.00 0.00 0.00 4.69
992 1064 1.906574 TCCTATTCCGTTCCACTGCTT 59.093 47.619 0.00 0.00 0.00 3.91
1029 1101 4.473520 CCCATGAGCTCCGGCGTT 62.474 66.667 12.15 0.00 44.37 4.84
1131 1203 2.001872 TGCAGCATGTTCTATGACACG 58.998 47.619 0.00 0.00 39.31 4.49
1148 1220 2.098233 CGCCTGCAACGTTCGGTAT 61.098 57.895 0.00 0.00 0.00 2.73
1151 1223 0.719465 CCTGCAACGTTCGGTATGTC 59.281 55.000 0.00 0.00 0.00 3.06
1173 1249 2.210116 TCTGACTTTGGTTTCGCTGTC 58.790 47.619 0.00 0.00 0.00 3.51
1183 1259 2.347755 GGTTTCGCTGTCGTTTCCTATC 59.652 50.000 0.00 0.00 36.96 2.08
1186 1272 1.200716 TCGCTGTCGTTTCCTATCGTT 59.799 47.619 0.00 0.00 36.96 3.85
1203 1289 0.719465 GTTGCTCGTATGGTGTTCGG 59.281 55.000 0.00 0.00 0.00 4.30
1214 1300 2.925724 TGGTGTTCGGTCATTTGTCTT 58.074 42.857 0.00 0.00 0.00 3.01
1257 1349 2.034879 GCGCTAGGTGCTTGCTTGA 61.035 57.895 0.00 0.00 40.11 3.02
1264 1364 1.000506 AGGTGCTTGCTTGATTGCTTG 59.999 47.619 0.00 0.00 0.00 4.01
1265 1365 1.000060 GGTGCTTGCTTGATTGCTTGA 60.000 47.619 0.00 0.00 0.00 3.02
1266 1366 2.353406 GGTGCTTGCTTGATTGCTTGAT 60.353 45.455 0.00 0.00 0.00 2.57
1267 1367 3.323243 GTGCTTGCTTGATTGCTTGATT 58.677 40.909 0.00 0.00 0.00 2.57
1268 1368 3.122948 GTGCTTGCTTGATTGCTTGATTG 59.877 43.478 0.00 0.00 0.00 2.67
1269 1369 2.093783 GCTTGCTTGATTGCTTGATTGC 59.906 45.455 0.00 0.00 0.00 3.56
1270 1370 3.585862 CTTGCTTGATTGCTTGATTGCT 58.414 40.909 0.00 0.00 0.00 3.91
1271 1371 3.671008 TGCTTGATTGCTTGATTGCTT 57.329 38.095 0.00 0.00 0.00 3.91
1392 1643 8.717717 TCTCCTTCATTGACTATGGTTTCATAT 58.282 33.333 0.00 0.00 35.53 1.78
1393 1644 8.681486 TCCTTCATTGACTATGGTTTCATATG 57.319 34.615 0.00 0.00 35.53 1.78
1394 1645 8.274322 TCCTTCATTGACTATGGTTTCATATGT 58.726 33.333 1.90 0.00 35.53 2.29
1397 1648 9.898152 TTCATTGACTATGGTTTCATATGTACA 57.102 29.630 0.00 0.00 35.53 2.90
1491 1751 4.379499 GGTGTAATTGTCTTAGTGGCAAGC 60.379 45.833 0.00 0.00 44.09 4.01
1533 1794 2.802247 GCTTGGAAAATGAGGTGTTTGC 59.198 45.455 0.00 0.00 0.00 3.68
1710 2198 8.865090 TCTTCTCTCCCTGTTTTCTATGATATC 58.135 37.037 0.00 0.00 0.00 1.63
1726 2214 8.747471 TCTATGATATCTCCTGTTAAGCATGAG 58.253 37.037 3.98 0.00 40.00 2.90
1786 2318 7.825331 TGGTGTTCCACAAAATGTAAGATAA 57.175 32.000 0.00 0.00 39.03 1.75
1788 2320 8.356657 TGGTGTTCCACAAAATGTAAGATAAAG 58.643 33.333 0.00 0.00 39.03 1.85
1789 2321 8.573035 GGTGTTCCACAAAATGTAAGATAAAGA 58.427 33.333 0.00 0.00 35.86 2.52
1823 2374 5.626955 CGAAAAGAGCTCAAGGATTTGAAAC 59.373 40.000 17.77 0.63 42.48 2.78
1824 2375 4.756084 AAGAGCTCAAGGATTTGAAACG 57.244 40.909 17.77 0.00 42.48 3.60
1826 2377 3.074412 GAGCTCAAGGATTTGAAACGGA 58.926 45.455 9.40 0.00 42.48 4.69
1834 2385 4.954875 AGGATTTGAAACGGAAAATGCAA 58.045 34.783 0.00 0.00 36.79 4.08
1842 2393 4.657436 AACGGAAAATGCAAGTTGGTAA 57.343 36.364 4.75 0.00 0.00 2.85
1843 2394 4.864704 ACGGAAAATGCAAGTTGGTAAT 57.135 36.364 4.75 0.00 0.00 1.89
1854 2405 8.752005 ATGCAAGTTGGTAATGTATCTTGTAT 57.248 30.769 4.75 0.00 34.99 2.29
1855 2406 7.984391 TGCAAGTTGGTAATGTATCTTGTATG 58.016 34.615 4.75 0.00 35.96 2.39
1857 2408 7.415095 GCAAGTTGGTAATGTATCTTGTATGCA 60.415 37.037 4.75 0.00 35.96 3.96
1858 2409 8.623903 CAAGTTGGTAATGTATCTTGTATGCAT 58.376 33.333 3.79 3.79 0.00 3.96
1859 2410 8.158169 AGTTGGTAATGTATCTTGTATGCATG 57.842 34.615 10.16 0.00 0.00 4.06
1861 2412 9.051679 GTTGGTAATGTATCTTGTATGCATGTA 57.948 33.333 10.16 0.00 0.00 2.29
1867 2418 8.607441 ATGTATCTTGTATGCATGTAATTCGT 57.393 30.769 10.16 0.00 0.00 3.85
1868 2419 8.432110 TGTATCTTGTATGCATGTAATTCGTT 57.568 30.769 10.16 0.00 0.00 3.85
1931 2483 6.927933 ATTTTGTTGCTGCTAATTCGTAAC 57.072 33.333 0.00 0.00 0.00 2.50
1940 2492 5.621197 TGCTAATTCGTAACTGCATTGTT 57.379 34.783 0.00 0.00 0.00 2.83
1941 2493 6.007936 TGCTAATTCGTAACTGCATTGTTT 57.992 33.333 0.00 0.00 0.00 2.83
1948 2500 4.025229 TCGTAACTGCATTGTTTGACAGAC 60.025 41.667 0.00 0.00 35.08 3.51
1965 2517 6.035843 TGACAGACAAAGCAGAAAAATTGAC 58.964 36.000 0.00 0.00 0.00 3.18
1969 2521 4.122046 ACAAAGCAGAAAAATTGACAGCC 58.878 39.130 0.00 0.00 0.00 4.85
1973 2525 2.226437 GCAGAAAAATTGACAGCCGAGA 59.774 45.455 0.00 0.00 0.00 4.04
1975 2527 3.250762 CAGAAAAATTGACAGCCGAGACA 59.749 43.478 0.00 0.00 0.00 3.41
2005 2557 4.712122 TGGTTCACAGTTGGTTCTTTTC 57.288 40.909 0.00 0.00 0.00 2.29
2020 2572 5.221067 GGTTCTTTTCCCAGAAGTCTTTGTC 60.221 44.000 0.00 0.00 33.29 3.18
2053 2605 1.281867 CATGGGTCTGCCTTTGGACTA 59.718 52.381 0.00 0.00 33.46 2.59
2057 2609 2.427506 GGTCTGCCTTTGGACTAACTG 58.572 52.381 0.00 0.00 33.46 3.16
2107 2659 7.996644 AAAGAAGACTTTTGGAAGTACCATACA 59.003 33.333 0.00 0.00 45.88 2.29
2131 2683 2.224597 TGCCATAGATGTGCCTGGTATG 60.225 50.000 0.00 0.00 0.00 2.39
2139 2691 1.005805 TGTGCCTGGTATGCCAAGATT 59.994 47.619 3.43 0.00 45.51 2.40
2140 2692 2.102578 GTGCCTGGTATGCCAAGATTT 58.897 47.619 3.43 0.00 45.51 2.17
2151 2709 9.365906 TGGTATGCCAAGATTTTGTCAATATAT 57.634 29.630 0.00 0.00 42.83 0.86
2205 2764 7.160547 TCATGCTTCATCTTTTTGCTTGATA 57.839 32.000 0.00 0.00 34.47 2.15
2233 2793 7.816945 ATAATTTTTAGTGTGCATTGTGCTC 57.183 32.000 3.41 0.37 45.31 4.26
2254 2814 5.760743 GCTCTGGAGAAATAGAAATACACCC 59.239 44.000 1.35 0.00 0.00 4.61
2261 2821 7.281100 GGAGAAATAGAAATACACCCAGAACTG 59.719 40.741 0.00 0.00 0.00 3.16
2266 2826 5.941788 AGAAATACACCCAGAACTGAACTT 58.058 37.500 3.19 0.00 0.00 2.66
2267 2827 5.998363 AGAAATACACCCAGAACTGAACTTC 59.002 40.000 3.19 0.00 0.00 3.01
2273 2833 6.184789 ACACCCAGAACTGAACTTCTTTTTA 58.815 36.000 3.19 0.00 0.00 1.52
2277 2837 7.014326 ACCCAGAACTGAACTTCTTTTTATTCC 59.986 37.037 3.19 0.00 0.00 3.01
2283 2843 9.647797 AACTGAACTTCTTTTTATTCCGTTTTT 57.352 25.926 0.00 0.00 28.03 1.94
2304 2864 9.827411 GTTTTTGAACTATAGTTTCAGTCCATC 57.173 33.333 18.96 4.25 38.56 3.51
2312 2873 4.623932 AGTTTCAGTCCATCTGTTAGCA 57.376 40.909 0.00 0.00 43.97 3.49
2321 2883 6.583806 CAGTCCATCTGTTAGCAACAAATTTC 59.416 38.462 0.00 0.00 41.61 2.17
2322 2884 6.265196 AGTCCATCTGTTAGCAACAAATTTCA 59.735 34.615 0.00 0.00 41.61 2.69
2331 2893 3.622612 AGCAACAAATTTCAAAGCACACC 59.377 39.130 0.00 0.00 0.00 4.16
2339 2901 8.344098 ACAAATTTCAAAGCACACCATTATTTG 58.656 29.630 0.00 0.00 36.10 2.32
2497 3062 5.502869 GCAATCAAGCAAAACCTCAAACAAG 60.503 40.000 0.00 0.00 0.00 3.16
2510 3075 8.409358 AACCTCAAACAAGCTGATAAATTACT 57.591 30.769 0.00 0.00 0.00 2.24
2512 3077 7.665559 ACCTCAAACAAGCTGATAAATTACTGA 59.334 33.333 0.00 0.00 0.00 3.41
2513 3078 8.514594 CCTCAAACAAGCTGATAAATTACTGAA 58.485 33.333 0.00 0.00 0.00 3.02
2514 3079 9.334693 CTCAAACAAGCTGATAAATTACTGAAC 57.665 33.333 0.00 0.00 0.00 3.18
2515 3080 9.066892 TCAAACAAGCTGATAAATTACTGAACT 57.933 29.630 0.00 0.00 0.00 3.01
2547 3128 9.941664 GTATGATATTTGATTTCTGTTCCTGTG 57.058 33.333 0.00 0.00 0.00 3.66
2552 3133 9.696917 ATATTTGATTTCTGTTCCTGTGTTTTC 57.303 29.630 0.00 0.00 0.00 2.29
2554 3135 5.200483 TGATTTCTGTTCCTGTGTTTTCCT 58.800 37.500 0.00 0.00 0.00 3.36
2562 3143 3.295093 TCCTGTGTTTTCCTGCATTTCA 58.705 40.909 0.00 0.00 0.00 2.69
2563 3144 3.703556 TCCTGTGTTTTCCTGCATTTCAA 59.296 39.130 0.00 0.00 0.00 2.69
2564 3145 4.053295 CCTGTGTTTTCCTGCATTTCAAG 58.947 43.478 0.00 0.00 0.00 3.02
2570 3151 6.417930 GTGTTTTCCTGCATTTCAAGAAGTAC 59.582 38.462 0.00 0.00 0.00 2.73
2597 3178 6.166984 TCCATAATTGACAAAACCTTTGCA 57.833 33.333 0.00 0.00 0.00 4.08
2624 3205 7.648039 TTTGACCTTGTTACCTGTATTTGTT 57.352 32.000 0.00 0.00 0.00 2.83
2657 3238 6.985188 TGTTATTCTTCTAGTTCATGGTGC 57.015 37.500 0.00 0.00 0.00 5.01
2658 3239 6.472016 TGTTATTCTTCTAGTTCATGGTGCA 58.528 36.000 0.00 0.00 0.00 4.57
2673 3254 7.114866 TCATGGTGCAATTCATTATCAATGT 57.885 32.000 0.00 0.00 39.87 2.71
2678 3259 8.476447 TGGTGCAATTCATTATCAATGTACATT 58.524 29.630 15.47 15.47 39.87 2.71
2680 3261 8.757789 GTGCAATTCATTATCAATGTACATTGG 58.242 33.333 36.25 24.53 46.08 3.16
2681 3262 8.693625 TGCAATTCATTATCAATGTACATTGGA 58.306 29.630 36.25 25.98 46.08 3.53
2682 3263 9.701098 GCAATTCATTATCAATGTACATTGGAT 57.299 29.630 36.25 29.48 46.08 3.41
2693 3274 9.913310 TCAATGTACATTGGATTTTATACTCCA 57.087 29.630 36.25 17.20 46.08 3.86
2703 3284 9.473007 TTGGATTTTATACTCCAAATCATCACA 57.527 29.630 3.05 0.00 46.01 3.58
2704 3285 9.473007 TGGATTTTATACTCCAAATCATCACAA 57.527 29.630 8.96 0.00 40.00 3.33
2705 3286 9.736023 GGATTTTATACTCCAAATCATCACAAC 57.264 33.333 8.96 0.00 40.00 3.32
2708 3289 9.513906 TTTTATACTCCAAATCATCACAACAGA 57.486 29.630 0.00 0.00 0.00 3.41
2709 3290 8.722480 TTATACTCCAAATCATCACAACAGAG 57.278 34.615 0.00 0.00 0.00 3.35
2710 3291 3.755378 ACTCCAAATCATCACAACAGAGC 59.245 43.478 0.00 0.00 0.00 4.09
2711 3292 3.753815 TCCAAATCATCACAACAGAGCA 58.246 40.909 0.00 0.00 0.00 4.26
2712 3293 4.338012 TCCAAATCATCACAACAGAGCAT 58.662 39.130 0.00 0.00 0.00 3.79
2713 3294 5.499313 TCCAAATCATCACAACAGAGCATA 58.501 37.500 0.00 0.00 0.00 3.14
2714 3295 5.587443 TCCAAATCATCACAACAGAGCATAG 59.413 40.000 0.00 0.00 0.00 2.23
2715 3296 5.356190 CCAAATCATCACAACAGAGCATAGT 59.644 40.000 0.00 0.00 0.00 2.12
2716 3297 6.539826 CCAAATCATCACAACAGAGCATAGTA 59.460 38.462 0.00 0.00 0.00 1.82
2717 3298 7.254692 CCAAATCATCACAACAGAGCATAGTAG 60.255 40.741 0.00 0.00 0.00 2.57
2718 3299 5.921962 TCATCACAACAGAGCATAGTAGT 57.078 39.130 0.00 0.00 0.00 2.73
2719 3300 5.654497 TCATCACAACAGAGCATAGTAGTG 58.346 41.667 0.00 0.00 0.00 2.74
2720 3301 5.418840 TCATCACAACAGAGCATAGTAGTGA 59.581 40.000 0.00 0.00 38.86 3.41
2721 3302 5.722021 TCACAACAGAGCATAGTAGTGAA 57.278 39.130 0.00 0.00 32.46 3.18
2722 3303 6.096673 TCACAACAGAGCATAGTAGTGAAA 57.903 37.500 0.00 0.00 32.46 2.69
2723 3304 6.521162 TCACAACAGAGCATAGTAGTGAAAA 58.479 36.000 0.00 0.00 32.46 2.29
2724 3305 6.646653 TCACAACAGAGCATAGTAGTGAAAAG 59.353 38.462 0.00 0.00 32.46 2.27
2725 3306 6.646653 CACAACAGAGCATAGTAGTGAAAAGA 59.353 38.462 0.00 0.00 0.00 2.52
2726 3307 6.870965 ACAACAGAGCATAGTAGTGAAAAGAG 59.129 38.462 0.00 0.00 0.00 2.85
2727 3308 6.597832 ACAGAGCATAGTAGTGAAAAGAGT 57.402 37.500 0.00 0.00 0.00 3.24
2728 3309 7.704578 ACAGAGCATAGTAGTGAAAAGAGTA 57.295 36.000 0.00 0.00 0.00 2.59
2729 3310 8.123639 ACAGAGCATAGTAGTGAAAAGAGTAA 57.876 34.615 0.00 0.00 0.00 2.24
2730 3311 8.030106 ACAGAGCATAGTAGTGAAAAGAGTAAC 58.970 37.037 0.00 0.00 0.00 2.50
2731 3312 8.029522 CAGAGCATAGTAGTGAAAAGAGTAACA 58.970 37.037 0.00 0.00 0.00 2.41
2732 3313 8.754080 AGAGCATAGTAGTGAAAAGAGTAACAT 58.246 33.333 0.00 0.00 0.00 2.71
2733 3314 8.709386 AGCATAGTAGTGAAAAGAGTAACATG 57.291 34.615 0.00 0.00 0.00 3.21
2734 3315 8.531982 AGCATAGTAGTGAAAAGAGTAACATGA 58.468 33.333 0.00 0.00 0.00 3.07
2735 3316 8.812329 GCATAGTAGTGAAAAGAGTAACATGAG 58.188 37.037 0.00 0.00 0.00 2.90
2736 3317 8.812329 CATAGTAGTGAAAAGAGTAACATGAGC 58.188 37.037 0.00 0.00 0.00 4.26
2737 3318 6.759272 AGTAGTGAAAAGAGTAACATGAGCA 58.241 36.000 0.00 0.00 0.00 4.26
2738 3319 5.931441 AGTGAAAAGAGTAACATGAGCAC 57.069 39.130 0.00 0.00 0.00 4.40
2739 3320 4.449068 AGTGAAAAGAGTAACATGAGCACG 59.551 41.667 0.00 0.00 0.00 5.34
2740 3321 3.186409 TGAAAAGAGTAACATGAGCACGC 59.814 43.478 0.00 0.00 0.00 5.34
2741 3322 2.455674 AAGAGTAACATGAGCACGCA 57.544 45.000 0.00 0.00 0.00 5.24
2742 3323 2.455674 AGAGTAACATGAGCACGCAA 57.544 45.000 0.00 0.00 0.00 4.85
2743 3324 2.069273 AGAGTAACATGAGCACGCAAC 58.931 47.619 0.00 0.00 0.00 4.17
2756 3337 4.062293 AGCACGCAACTCTTGTTAATACA 58.938 39.130 0.00 0.00 34.60 2.29
2757 3338 4.152402 AGCACGCAACTCTTGTTAATACAG 59.848 41.667 0.00 0.00 35.28 2.74
2762 3343 5.063944 CGCAACTCTTGTTAATACAGCTGAT 59.936 40.000 23.35 8.69 35.28 2.90
2830 3411 3.234353 AGTTCCATCATCTCGCCATCTA 58.766 45.455 0.00 0.00 0.00 1.98
2831 3412 3.837146 AGTTCCATCATCTCGCCATCTAT 59.163 43.478 0.00 0.00 0.00 1.98
2863 3444 2.203209 GCCCCAACTATGAGGGCG 60.203 66.667 3.09 0.00 46.35 6.13
2885 3466 2.061220 CCCTTCTCACAGCTGACCA 58.939 57.895 23.35 2.01 0.00 4.02
2902 3486 3.907474 TGACCAGGGTAAGAAACTGATGA 59.093 43.478 0.00 0.00 34.21 2.92
2927 3511 3.251972 GGCTTCCAGTCTATGCTAAATGC 59.748 47.826 0.00 0.00 43.25 3.56
2931 3515 5.468540 TCCAGTCTATGCTAAATGCGTAT 57.531 39.130 0.00 0.00 46.63 3.06
2946 3530 4.491234 TGCGTATTGTTTTGGGTACTTG 57.509 40.909 0.00 0.00 0.00 3.16
2949 3533 5.179742 TGCGTATTGTTTTGGGTACTTGTAG 59.820 40.000 0.00 0.00 0.00 2.74
2963 3549 1.265095 CTTGTAGGCAGCACAACAGTG 59.735 52.381 0.00 0.00 32.64 3.66
2966 3552 1.798813 GTAGGCAGCACAACAGTGTAC 59.201 52.381 0.00 0.00 35.72 2.90
3000 3586 0.370273 GTGTTCGGTAATCGCAGCTG 59.630 55.000 10.11 10.11 39.05 4.24
3127 3713 0.034198 TGATTTCGACGCTGTGGGAA 59.966 50.000 0.00 0.00 0.00 3.97
3131 3717 0.675083 TTCGACGCTGTGGGAAACTA 59.325 50.000 0.00 0.00 0.00 2.24
3132 3718 0.038892 TCGACGCTGTGGGAAACTAC 60.039 55.000 0.00 0.00 43.12 2.73
3158 3807 1.447489 CTGAGGTGCCGAGCTTGAG 60.447 63.158 1.22 0.00 0.00 3.02
3171 3820 0.645868 GCTTGAGCGTGAATACCGAC 59.354 55.000 0.00 0.00 0.00 4.79
3172 3821 0.914551 CTTGAGCGTGAATACCGACG 59.085 55.000 0.00 0.00 38.63 5.12
3176 3825 4.470876 CGTGAATACCGACGCTGT 57.529 55.556 0.00 0.00 0.00 4.40
3177 3826 1.988409 CGTGAATACCGACGCTGTG 59.012 57.895 0.00 0.00 0.00 3.66
3178 3827 1.410737 CGTGAATACCGACGCTGTGG 61.411 60.000 0.00 0.00 0.00 4.17
3179 3828 1.082117 GTGAATACCGACGCTGTGGG 61.082 60.000 7.88 7.88 37.44 4.61
3180 3829 1.252215 TGAATACCGACGCTGTGGGA 61.252 55.000 14.52 0.00 34.99 4.37
3181 3830 0.804933 GAATACCGACGCTGTGGGAC 60.805 60.000 14.52 2.74 34.99 4.46
3182 3831 1.537814 AATACCGACGCTGTGGGACA 61.538 55.000 14.52 4.70 34.99 4.02
3193 3842 2.203280 TGGGACACTGCAAACGGG 60.203 61.111 0.00 0.00 0.00 5.28
3194 3843 3.670377 GGGACACTGCAAACGGGC 61.670 66.667 0.00 0.00 0.00 6.13
3195 3844 2.594592 GGACACTGCAAACGGGCT 60.595 61.111 0.00 0.00 34.04 5.19
3196 3845 2.193536 GGACACTGCAAACGGGCTT 61.194 57.895 0.00 0.00 34.04 4.35
3197 3846 0.887387 GGACACTGCAAACGGGCTTA 60.887 55.000 0.00 0.00 34.04 3.09
3198 3847 0.517316 GACACTGCAAACGGGCTTAG 59.483 55.000 0.00 0.00 34.04 2.18
3199 3848 0.889186 ACACTGCAAACGGGCTTAGG 60.889 55.000 0.00 0.00 34.04 2.69
3200 3849 0.889186 CACTGCAAACGGGCTTAGGT 60.889 55.000 0.00 0.00 34.04 3.08
3201 3850 0.889186 ACTGCAAACGGGCTTAGGTG 60.889 55.000 0.00 0.00 34.04 4.00
3202 3851 2.200170 CTGCAAACGGGCTTAGGTGC 62.200 60.000 0.00 0.00 34.04 5.01
3209 3858 2.269241 GGCTTAGGTGCCGAGCTT 59.731 61.111 15.44 0.00 43.74 3.74
3210 3859 2.109126 GGCTTAGGTGCCGAGCTTG 61.109 63.158 15.44 0.00 43.74 4.01
3211 3860 1.079127 GCTTAGGTGCCGAGCTTGA 60.079 57.895 1.22 0.00 33.72 3.02
3212 3861 1.086634 GCTTAGGTGCCGAGCTTGAG 61.087 60.000 1.22 0.00 33.72 3.02
3213 3862 1.079127 TTAGGTGCCGAGCTTGAGC 60.079 57.895 1.22 4.99 42.49 4.26
3235 3884 4.355437 CGTCAATACTGATCTGAGACACC 58.645 47.826 6.60 0.00 33.05 4.16
3236 3885 4.097135 CGTCAATACTGATCTGAGACACCT 59.903 45.833 6.60 0.00 33.05 4.00
3237 3886 5.347342 GTCAATACTGATCTGAGACACCTG 58.653 45.833 6.60 0.00 33.05 4.00
3238 3887 5.019470 TCAATACTGATCTGAGACACCTGT 58.981 41.667 6.60 0.00 0.00 4.00
3239 3888 4.998671 ATACTGATCTGAGACACCTGTG 57.001 45.455 6.60 0.00 0.00 3.66
3240 3889 9.399099 GTCAATACTGATCTGAGACACCTGTGT 62.399 44.444 6.60 1.88 39.25 3.72
3253 3904 2.028930 CACCTGTGTCTTCCACTCTACC 60.029 54.545 0.00 0.00 44.81 3.18
3260 3911 1.064906 TCTTCCACTCTACCGACGGAT 60.065 52.381 23.38 7.58 0.00 4.18
3267 3918 4.066490 CACTCTACCGACGGATAAGATCT 58.934 47.826 23.38 5.70 0.00 2.75
3272 3923 2.231529 CCGACGGATAAGATCTGAGGT 58.768 52.381 8.64 0.00 39.01 3.85
3317 3968 3.021695 ACCTGATTGATGACCAGCAATG 58.978 45.455 16.85 6.71 46.10 2.82
3352 4029 3.636300 TCAGCAATAGTTGTGCCTTTGTT 59.364 39.130 0.00 0.00 43.27 2.83
3374 4051 6.206634 TGTTTTTCTTGTAAGGGCATCTACAG 59.793 38.462 0.00 0.00 0.00 2.74
3507 4189 3.036633 CGTCGATTCGTAATCAGAGTGG 58.963 50.000 5.89 0.00 37.78 4.00
3512 4194 4.499188 CGATTCGTAATCAGAGTGGGCTAA 60.499 45.833 0.00 0.00 37.78 3.09
3513 4195 5.542779 GATTCGTAATCAGAGTGGGCTAAT 58.457 41.667 0.00 0.00 37.83 1.73
3541 4223 0.889186 ACTAACAACCTTGGCTGGCG 60.889 55.000 0.00 0.00 0.00 5.69
3661 4344 8.428852 AGTTTAAGTTGCCTTTGGAACATTTAT 58.571 29.630 0.00 0.00 39.30 1.40
3736 4419 1.195115 GGTCAGATACCCTCAGCACA 58.805 55.000 0.00 0.00 43.16 4.57
3748 4431 4.202419 ACCCTCAGCACAATGTAGTTTGTA 60.202 41.667 0.00 0.00 37.73 2.41
3754 4437 5.181056 CAGCACAATGTAGTTTGTACCATCA 59.819 40.000 0.00 0.00 37.73 3.07
3769 4452 1.271543 CCATCAGCACCCTTGAACTCA 60.272 52.381 0.00 0.00 0.00 3.41
3849 4532 1.757118 CTTGCCTTCCTCGTCCAGATA 59.243 52.381 0.00 0.00 0.00 1.98
3908 4591 8.744680 AAATGAACATGGCATTAGCTCAAAAGC 61.745 37.037 14.09 0.00 40.64 3.51
3959 4644 2.613474 GGTAGTTGCAACATGACCCGTA 60.613 50.000 30.11 9.38 0.00 4.02
3979 4664 2.704572 ACAGCTCAGAAACATAGGCAC 58.295 47.619 0.00 0.00 0.00 5.01
3994 4679 5.590259 ACATAGGCACCATAGACATCAAAAC 59.410 40.000 0.00 0.00 0.00 2.43
4130 4815 3.057315 ACAGGACGAAAAGCATGAAATGG 60.057 43.478 0.00 0.00 46.86 3.16
4155 4840 9.248291 GGTTATTATAACAAGATTCGACGGTAA 57.752 33.333 15.80 0.00 0.00 2.85
4180 4865 5.353394 AACCTAAGACAGAAACAGACACA 57.647 39.130 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.592814 CGGAGGCGGCGTAGATCA 61.593 66.667 9.37 0.00 0.00 2.92
117 140 1.877680 CGTCAGGTGGCTGAACAATCA 60.878 52.381 0.00 0.00 34.88 2.57
119 142 1.237285 GCGTCAGGTGGCTGAACAAT 61.237 55.000 0.00 0.00 34.88 2.71
121 144 2.280797 GCGTCAGGTGGCTGAACA 60.281 61.111 0.00 0.00 34.88 3.18
276 299 5.409214 CACCCATCAGAAAATGCGAAAAATT 59.591 36.000 0.00 0.00 0.00 1.82
314 338 0.615331 CATCAGGTGTAGCAGGTGGT 59.385 55.000 0.00 0.00 0.00 4.16
315 339 0.745845 GCATCAGGTGTAGCAGGTGG 60.746 60.000 0.00 0.00 0.00 4.61
317 341 1.219124 CGCATCAGGTGTAGCAGGT 59.781 57.895 0.00 0.00 0.00 4.00
318 342 1.086067 CACGCATCAGGTGTAGCAGG 61.086 60.000 0.00 0.00 38.42 4.85
319 343 1.699656 GCACGCATCAGGTGTAGCAG 61.700 60.000 0.00 0.00 38.42 4.24
320 344 1.741401 GCACGCATCAGGTGTAGCA 60.741 57.895 0.00 0.00 38.42 3.49
321 345 1.741401 TGCACGCATCAGGTGTAGC 60.741 57.895 0.00 0.00 38.42 3.58
322 346 0.390340 AGTGCACGCATCAGGTGTAG 60.390 55.000 12.01 0.00 38.42 2.74
323 347 0.670239 CAGTGCACGCATCAGGTGTA 60.670 55.000 12.01 0.00 38.42 2.90
324 348 1.962822 CAGTGCACGCATCAGGTGT 60.963 57.895 12.01 0.00 42.06 4.16
325 349 1.022982 ATCAGTGCACGCATCAGGTG 61.023 55.000 12.01 1.32 38.42 4.00
326 350 1.022982 CATCAGTGCACGCATCAGGT 61.023 55.000 12.01 0.00 0.00 4.00
327 351 1.719709 CATCAGTGCACGCATCAGG 59.280 57.895 12.01 0.00 0.00 3.86
338 362 4.186159 TCACACACATCATAGCATCAGTG 58.814 43.478 0.00 0.00 0.00 3.66
339 363 4.476628 TCACACACATCATAGCATCAGT 57.523 40.909 0.00 0.00 0.00 3.41
340 364 4.319549 GCATCACACACATCATAGCATCAG 60.320 45.833 0.00 0.00 0.00 2.90
341 365 3.562557 GCATCACACACATCATAGCATCA 59.437 43.478 0.00 0.00 0.00 3.07
342 366 3.562557 TGCATCACACACATCATAGCATC 59.437 43.478 0.00 0.00 0.00 3.91
343 367 3.547746 TGCATCACACACATCATAGCAT 58.452 40.909 0.00 0.00 0.00 3.79
344 368 2.988570 TGCATCACACACATCATAGCA 58.011 42.857 0.00 0.00 0.00 3.49
345 369 3.562557 TCATGCATCACACACATCATAGC 59.437 43.478 0.00 0.00 0.00 2.97
346 370 4.814771 ACTCATGCATCACACACATCATAG 59.185 41.667 0.00 0.00 0.00 2.23
347 371 4.773013 ACTCATGCATCACACACATCATA 58.227 39.130 0.00 0.00 0.00 2.15
348 372 3.617284 ACTCATGCATCACACACATCAT 58.383 40.909 0.00 0.00 0.00 2.45
349 373 3.062122 ACTCATGCATCACACACATCA 57.938 42.857 0.00 0.00 0.00 3.07
350 374 4.573607 ACATACTCATGCATCACACACATC 59.426 41.667 0.00 0.00 35.39 3.06
351 375 4.334481 CACATACTCATGCATCACACACAT 59.666 41.667 0.00 0.00 35.39 3.21
352 376 3.685756 CACATACTCATGCATCACACACA 59.314 43.478 0.00 0.00 35.39 3.72
353 377 3.934579 TCACATACTCATGCATCACACAC 59.065 43.478 0.00 0.00 35.39 3.82
354 378 4.205065 TCACATACTCATGCATCACACA 57.795 40.909 0.00 0.00 35.39 3.72
355 379 4.573607 ACATCACATACTCATGCATCACAC 59.426 41.667 0.00 0.00 35.39 3.82
356 380 4.773013 ACATCACATACTCATGCATCACA 58.227 39.130 0.00 0.00 35.39 3.58
357 381 6.872547 AGATACATCACATACTCATGCATCAC 59.127 38.462 0.00 0.00 35.39 3.06
358 382 6.872020 CAGATACATCACATACTCATGCATCA 59.128 38.462 0.00 0.00 35.39 3.07
359 383 7.095270 TCAGATACATCACATACTCATGCATC 58.905 38.462 0.00 0.00 35.39 3.91
360 384 7.001099 TCAGATACATCACATACTCATGCAT 57.999 36.000 0.00 0.00 35.39 3.96
361 385 6.409524 TCAGATACATCACATACTCATGCA 57.590 37.500 0.00 0.00 35.39 3.96
362 386 6.703165 TGTTCAGATACATCACATACTCATGC 59.297 38.462 0.00 0.00 35.39 4.06
363 387 8.652810 TTGTTCAGATACATCACATACTCATG 57.347 34.615 0.00 0.00 38.21 3.07
364 388 9.671279 TTTTGTTCAGATACATCACATACTCAT 57.329 29.630 0.00 0.00 0.00 2.90
365 389 9.500785 TTTTTGTTCAGATACATCACATACTCA 57.499 29.630 0.00 0.00 0.00 3.41
396 427 6.150140 ACAATGAAATAAAGAGCTCACTGTCC 59.850 38.462 17.77 0.00 0.00 4.02
449 483 6.344500 ACGAGCTCACTTTCAAGATCATATT 58.656 36.000 15.40 0.00 0.00 1.28
488 540 4.309099 TCAAAACATGCTCATTTTCAGGC 58.691 39.130 0.00 0.00 0.00 4.85
490 542 8.697846 ATACATCAAAACATGCTCATTTTCAG 57.302 30.769 0.00 0.00 0.00 3.02
561 615 8.270744 ACAATGAAATAAAGAGCTCTGGTCTAT 58.729 33.333 19.06 9.26 39.62 1.98
614 668 5.748592 ACGAAGCAAAAGAGAATACACAAC 58.251 37.500 0.00 0.00 0.00 3.32
635 689 3.128764 TCACTGTCTAGCACAAGGATACG 59.871 47.826 0.00 0.00 46.39 3.06
652 707 0.740149 TGTGCAAAAGTGGCTCACTG 59.260 50.000 8.37 0.09 44.62 3.66
680 735 2.355209 GGTTAGGGCCAGTTCTTCTGAG 60.355 54.545 6.18 0.00 46.27 3.35
681 736 1.628846 GGTTAGGGCCAGTTCTTCTGA 59.371 52.381 6.18 0.00 46.27 3.27
682 737 1.351017 TGGTTAGGGCCAGTTCTTCTG 59.649 52.381 6.18 0.00 43.27 3.02
683 738 1.742308 TGGTTAGGGCCAGTTCTTCT 58.258 50.000 6.18 0.00 33.97 2.85
684 739 2.579410 TTGGTTAGGGCCAGTTCTTC 57.421 50.000 6.18 0.00 40.01 2.87
685 740 2.291605 GGATTGGTTAGGGCCAGTTCTT 60.292 50.000 6.18 0.00 40.01 2.52
686 741 1.285078 GGATTGGTTAGGGCCAGTTCT 59.715 52.381 6.18 0.00 40.01 3.01
687 742 1.685180 GGGATTGGTTAGGGCCAGTTC 60.685 57.143 6.18 0.00 40.01 3.01
688 743 0.335019 GGGATTGGTTAGGGCCAGTT 59.665 55.000 6.18 0.00 40.01 3.16
690 745 1.230212 GGGGATTGGTTAGGGCCAG 59.770 63.158 6.18 0.00 40.01 4.85
691 746 2.321357 GGGGGATTGGTTAGGGCCA 61.321 63.158 6.18 0.00 36.62 5.36
692 747 2.607025 GGGGGATTGGTTAGGGCC 59.393 66.667 0.00 0.00 0.00 5.80
734 789 4.000988 GAGTTTGGTGGCGATTTTAGAGA 58.999 43.478 0.00 0.00 0.00 3.10
787 842 3.866582 GATAGCAGCTGCCGGGGT 61.867 66.667 34.39 18.55 43.38 4.95
959 1016 0.399949 AATAGGAGGGGATGCCGTGA 60.400 55.000 2.06 0.00 0.00 4.35
967 1025 0.340558 TGGAACGGAATAGGAGGGGA 59.659 55.000 0.00 0.00 0.00 4.81
1029 1101 2.364973 TCCGCTATCACTGGCCCA 60.365 61.111 0.00 0.00 0.00 5.36
1035 1107 0.259065 TCTCCACCTCCGCTATCACT 59.741 55.000 0.00 0.00 0.00 3.41
1041 1113 1.901085 GTTCATCTCCACCTCCGCT 59.099 57.895 0.00 0.00 0.00 5.52
1131 1203 1.296056 ACATACCGAACGTTGCAGGC 61.296 55.000 5.00 0.00 0.00 4.85
1148 1220 2.833794 CGAAACCAAAGTCAGAGGACA 58.166 47.619 0.00 0.00 46.80 4.02
1151 1223 1.532868 CAGCGAAACCAAAGTCAGAGG 59.467 52.381 0.00 0.00 0.00 3.69
1173 1249 1.625616 ACGAGCAACGATAGGAAACG 58.374 50.000 10.05 0.00 45.77 3.60
1186 1272 0.108992 GACCGAACACCATACGAGCA 60.109 55.000 0.00 0.00 0.00 4.26
1203 1289 4.319766 CCACACACTAGCAAGACAAATGAC 60.320 45.833 0.00 0.00 0.00 3.06
1214 1300 0.902984 ACCCGATCCACACACTAGCA 60.903 55.000 0.00 0.00 0.00 3.49
1257 1349 3.825014 AGTGAGACAAGCAATCAAGCAAT 59.175 39.130 0.00 0.00 36.85 3.56
1264 1364 2.346847 CGTGCTAGTGAGACAAGCAATC 59.653 50.000 0.00 0.00 47.00 2.67
1265 1365 2.341257 CGTGCTAGTGAGACAAGCAAT 58.659 47.619 0.00 0.00 47.00 3.56
1266 1366 1.605457 CCGTGCTAGTGAGACAAGCAA 60.605 52.381 0.00 0.00 47.00 3.91
1267 1367 0.038251 CCGTGCTAGTGAGACAAGCA 60.038 55.000 0.00 0.00 43.66 3.91
1268 1368 0.243907 TCCGTGCTAGTGAGACAAGC 59.756 55.000 0.00 0.00 36.77 4.01
1269 1369 1.542030 AGTCCGTGCTAGTGAGACAAG 59.458 52.381 0.00 0.00 0.00 3.16
1270 1370 1.617322 AGTCCGTGCTAGTGAGACAA 58.383 50.000 0.00 0.00 0.00 3.18
1271 1371 1.269723 CAAGTCCGTGCTAGTGAGACA 59.730 52.381 0.00 0.00 0.00 3.41
1294 1399 7.714377 AGGCATCAGTCTGATAGATTACAAAAG 59.286 37.037 15.05 0.13 34.28 2.27
1392 1643 5.122554 TCGAAAAAGCACAACTCTTTGTACA 59.877 36.000 0.00 0.00 44.57 2.90
1393 1644 5.565695 TCGAAAAAGCACAACTCTTTGTAC 58.434 37.500 0.00 0.00 44.57 2.90
1394 1645 5.804692 TCGAAAAAGCACAACTCTTTGTA 57.195 34.783 0.00 0.00 44.57 2.41
1396 1647 5.036737 ACATCGAAAAAGCACAACTCTTTG 58.963 37.500 0.00 0.00 38.83 2.77
1397 1648 5.163663 TGACATCGAAAAAGCACAACTCTTT 60.164 36.000 0.00 0.00 35.47 2.52
1491 1751 9.565213 CCAAGCAAGAAAATTTTGTCTATAGAG 57.435 33.333 8.47 0.00 0.00 2.43
1533 1794 4.201851 GCCTAATGTGCTTGTGTCATACAG 60.202 45.833 0.00 0.00 41.10 2.74
1653 1922 6.822667 TCAAATGTGACATTAACATCTGCT 57.177 33.333 11.70 0.00 37.27 4.24
1681 1952 6.441924 TCATAGAAAACAGGGAGAGAAGATGT 59.558 38.462 0.00 0.00 0.00 3.06
1741 2229 9.369904 ACACCATTTATTGCAGTTAAATCATTC 57.630 29.630 11.65 0.00 29.07 2.67
1786 2318 8.547967 TGAGCTCTTTTCGTGTAATATTTCTT 57.452 30.769 16.19 0.00 0.00 2.52
1788 2320 7.905493 CCTTGAGCTCTTTTCGTGTAATATTTC 59.095 37.037 16.19 0.00 0.00 2.17
1789 2321 7.606456 TCCTTGAGCTCTTTTCGTGTAATATTT 59.394 33.333 16.19 0.00 0.00 1.40
1798 2349 4.389374 TCAAATCCTTGAGCTCTTTTCGT 58.611 39.130 16.19 0.00 36.62 3.85
1800 2351 5.626955 CGTTTCAAATCCTTGAGCTCTTTTC 59.373 40.000 16.19 0.00 42.48 2.29
1808 2359 5.119125 GCATTTTCCGTTTCAAATCCTTGAG 59.881 40.000 0.00 0.00 42.48 3.02
1823 2374 4.555262 ACATTACCAACTTGCATTTTCCG 58.445 39.130 0.00 0.00 0.00 4.30
1824 2375 7.547227 AGATACATTACCAACTTGCATTTTCC 58.453 34.615 0.00 0.00 0.00 3.13
1826 2377 8.367156 ACAAGATACATTACCAACTTGCATTTT 58.633 29.630 0.00 0.00 38.42 1.82
1834 2385 7.775093 ACATGCATACAAGATACATTACCAACT 59.225 33.333 0.00 0.00 0.00 3.16
1842 2393 8.607441 ACGAATTACATGCATACAAGATACAT 57.393 30.769 0.00 0.00 0.00 2.29
1843 2394 8.432110 AACGAATTACATGCATACAAGATACA 57.568 30.769 0.00 0.00 0.00 2.29
1865 2416 9.787532 AGGATTCATGTTCATAATTTGTAAACG 57.212 29.630 0.00 0.00 0.00 3.60
1868 2419 9.585099 GCAAGGATTCATGTTCATAATTTGTAA 57.415 29.630 0.00 0.00 0.00 2.41
1870 2421 7.613585 TGCAAGGATTCATGTTCATAATTTGT 58.386 30.769 0.00 0.00 0.00 2.83
1871 2422 8.126871 CTGCAAGGATTCATGTTCATAATTTG 57.873 34.615 0.00 0.00 0.00 2.32
1893 2444 5.521372 GCAACAAAATATTCTCCAATCCTGC 59.479 40.000 0.00 0.00 0.00 4.85
1899 2450 5.726980 AGCAGCAACAAAATATTCTCCAA 57.273 34.783 0.00 0.00 0.00 3.53
1904 2455 7.740519 ACGAATTAGCAGCAACAAAATATTC 57.259 32.000 0.00 0.00 0.00 1.75
1908 2459 6.582295 CAGTTACGAATTAGCAGCAACAAAAT 59.418 34.615 0.00 0.00 0.00 1.82
1940 2492 6.531240 GTCAATTTTTCTGCTTTGTCTGTCAA 59.469 34.615 0.00 0.00 0.00 3.18
1941 2493 6.035843 GTCAATTTTTCTGCTTTGTCTGTCA 58.964 36.000 0.00 0.00 0.00 3.58
1948 2500 3.182972 CGGCTGTCAATTTTTCTGCTTTG 59.817 43.478 0.00 0.00 0.00 2.77
1957 2509 1.537202 GCTGTCTCGGCTGTCAATTTT 59.463 47.619 0.00 0.00 32.24 1.82
1969 2521 2.101415 TGAACCATATCCAGCTGTCTCG 59.899 50.000 13.81 0.00 0.00 4.04
1973 2525 2.573462 ACTGTGAACCATATCCAGCTGT 59.427 45.455 13.81 0.00 0.00 4.40
1975 2527 3.614092 CAACTGTGAACCATATCCAGCT 58.386 45.455 0.00 0.00 0.00 4.24
2005 2557 1.512926 CACCGACAAAGACTTCTGGG 58.487 55.000 0.00 0.00 0.00 4.45
2020 2572 2.505982 CCATGAGGGTAGCCACCG 59.494 66.667 14.62 0.85 46.86 4.94
2042 2594 1.269723 GCCAACAGTTAGTCCAAAGGC 59.730 52.381 0.00 0.00 0.00 4.35
2074 2626 6.440647 ACTTCCAAAAGTCTTCTTTTCCCTTT 59.559 34.615 3.43 0.00 46.83 3.11
2101 2653 3.072211 CACATCTATGGCAGCTGTATGG 58.928 50.000 16.64 12.17 31.84 2.74
2105 2657 0.465097 GGCACATCTATGGCAGCTGT 60.465 55.000 16.64 0.00 44.34 4.40
2107 2659 4.894201 GGCACATCTATGGCAGCT 57.106 55.556 0.00 0.00 44.34 4.24
2131 2683 9.241317 CAGTGAATATATTGACAAAATCTTGGC 57.759 33.333 16.04 0.00 41.44 4.52
2177 2736 8.255206 TCAAGCAAAAAGATGAAGCATGATAAT 58.745 29.630 0.00 0.00 29.35 1.28
2179 2738 7.160547 TCAAGCAAAAAGATGAAGCATGATA 57.839 32.000 0.00 0.00 29.35 2.15
2181 2740 5.456548 TCAAGCAAAAAGATGAAGCATGA 57.543 34.783 0.00 0.00 31.52 3.07
2205 2764 9.139174 GCACAATGCACACTAAAAATTATAAGT 57.861 29.630 0.00 0.00 44.26 2.24
2228 2788 6.258947 GGTGTATTTCTATTTCTCCAGAGCAC 59.741 42.308 0.00 0.00 0.00 4.40
2233 2793 6.889198 TCTGGGTGTATTTCTATTTCTCCAG 58.111 40.000 0.00 0.00 39.32 3.86
2254 2814 7.639945 ACGGAATAAAAAGAAGTTCAGTTCTG 58.360 34.615 5.50 7.24 36.86 3.02
2261 2821 9.895894 GTTCAAAAACGGAATAAAAAGAAGTTC 57.104 29.630 0.00 0.00 0.00 3.01
2273 2833 9.063615 ACTGAAACTATAGTTCAAAAACGGAAT 57.936 29.630 18.28 0.00 40.48 3.01
2277 2837 7.857569 TGGACTGAAACTATAGTTCAAAAACG 58.142 34.615 18.28 8.47 40.48 3.60
2298 2858 6.446318 TGAAATTTGTTGCTAACAGATGGAC 58.554 36.000 0.00 3.40 43.27 4.02
2304 2864 6.035866 TGTGCTTTGAAATTTGTTGCTAACAG 59.964 34.615 0.00 0.00 43.27 3.16
2312 2873 8.449251 AATAATGGTGTGCTTTGAAATTTGTT 57.551 26.923 0.00 0.00 0.00 2.83
2321 2883 6.036953 ACACAAACAAATAATGGTGTGCTTTG 59.963 34.615 11.89 0.00 45.74 2.77
2322 2884 6.112058 ACACAAACAAATAATGGTGTGCTTT 58.888 32.000 11.89 0.00 45.74 3.51
2339 2901 5.583495 TGCCAATGTAACTGTAACACAAAC 58.417 37.500 0.00 0.00 0.00 2.93
2401 2966 9.745323 GATTGCTTTTCTTACATTATTTTGTGC 57.255 29.630 0.00 0.00 0.00 4.57
2518 3083 9.911788 AGGAACAGAAATCAAATATCATACACT 57.088 29.630 0.00 0.00 0.00 3.55
2547 3128 6.503524 TGTACTTCTTGAAATGCAGGAAAAC 58.496 36.000 0.00 0.00 41.37 2.43
2552 3133 3.755378 AGCTGTACTTCTTGAAATGCAGG 59.245 43.478 10.72 0.00 0.00 4.85
2554 3135 3.753272 GGAGCTGTACTTCTTGAAATGCA 59.247 43.478 0.00 0.00 0.00 3.96
2562 3143 6.711277 TGTCAATTATGGAGCTGTACTTCTT 58.289 36.000 0.00 0.00 0.00 2.52
2563 3144 6.299805 TGTCAATTATGGAGCTGTACTTCT 57.700 37.500 0.00 0.00 0.00 2.85
2564 3145 6.985188 TTGTCAATTATGGAGCTGTACTTC 57.015 37.500 0.00 0.00 0.00 3.01
2570 3151 5.649782 AGGTTTTGTCAATTATGGAGCTG 57.350 39.130 0.00 0.00 0.00 4.24
2597 3178 3.577805 ACAGGTAACAAGGTCAAAGCT 57.422 42.857 0.00 0.00 41.41 3.74
2631 3212 8.462016 GCACCATGAACTAGAAGAATAACAAAT 58.538 33.333 0.00 0.00 0.00 2.32
2650 3231 7.921745 TGTACATTGATAATGAATTGCACCATG 59.078 33.333 8.41 0.00 41.46 3.66
2678 3259 9.473007 TTGTGATGATTTGGAGTATAAAATCCA 57.527 29.630 5.85 2.83 43.87 3.41
2679 3260 9.736023 GTTGTGATGATTTGGAGTATAAAATCC 57.264 33.333 5.85 0.59 40.51 3.01
2682 3263 9.513906 TCTGTTGTGATGATTTGGAGTATAAAA 57.486 29.630 0.00 0.00 0.00 1.52
2683 3264 9.166173 CTCTGTTGTGATGATTTGGAGTATAAA 57.834 33.333 0.00 0.00 0.00 1.40
2684 3265 7.280876 GCTCTGTTGTGATGATTTGGAGTATAA 59.719 37.037 0.00 0.00 0.00 0.98
2685 3266 6.763135 GCTCTGTTGTGATGATTTGGAGTATA 59.237 38.462 0.00 0.00 0.00 1.47
2686 3267 5.587844 GCTCTGTTGTGATGATTTGGAGTAT 59.412 40.000 0.00 0.00 0.00 2.12
2687 3268 4.937620 GCTCTGTTGTGATGATTTGGAGTA 59.062 41.667 0.00 0.00 0.00 2.59
2688 3269 3.755378 GCTCTGTTGTGATGATTTGGAGT 59.245 43.478 0.00 0.00 0.00 3.85
2689 3270 3.754850 TGCTCTGTTGTGATGATTTGGAG 59.245 43.478 0.00 0.00 0.00 3.86
2690 3271 3.753815 TGCTCTGTTGTGATGATTTGGA 58.246 40.909 0.00 0.00 0.00 3.53
2691 3272 4.713824 ATGCTCTGTTGTGATGATTTGG 57.286 40.909 0.00 0.00 0.00 3.28
2692 3273 6.432607 ACTATGCTCTGTTGTGATGATTTG 57.567 37.500 0.00 0.00 0.00 2.32
2693 3274 7.279536 CACTACTATGCTCTGTTGTGATGATTT 59.720 37.037 10.47 0.00 40.47 2.17
2694 3275 6.760298 CACTACTATGCTCTGTTGTGATGATT 59.240 38.462 10.47 0.00 40.47 2.57
2695 3276 6.097412 TCACTACTATGCTCTGTTGTGATGAT 59.903 38.462 13.04 0.00 41.33 2.45
2696 3277 5.418840 TCACTACTATGCTCTGTTGTGATGA 59.581 40.000 13.04 0.00 41.33 2.92
2697 3278 5.654497 TCACTACTATGCTCTGTTGTGATG 58.346 41.667 13.04 0.00 41.33 3.07
2698 3279 5.921962 TCACTACTATGCTCTGTTGTGAT 57.078 39.130 13.04 0.00 41.33 3.06
2699 3280 5.722021 TTCACTACTATGCTCTGTTGTGA 57.278 39.130 13.04 13.04 43.21 3.58
2700 3281 6.646653 TCTTTTCACTACTATGCTCTGTTGTG 59.353 38.462 10.00 10.00 39.80 3.33
2701 3282 6.759272 TCTTTTCACTACTATGCTCTGTTGT 58.241 36.000 0.00 0.00 0.00 3.32
2702 3283 6.870965 ACTCTTTTCACTACTATGCTCTGTTG 59.129 38.462 0.00 0.00 0.00 3.33
2703 3284 6.998802 ACTCTTTTCACTACTATGCTCTGTT 58.001 36.000 0.00 0.00 0.00 3.16
2704 3285 6.597832 ACTCTTTTCACTACTATGCTCTGT 57.402 37.500 0.00 0.00 0.00 3.41
2705 3286 8.029522 TGTTACTCTTTTCACTACTATGCTCTG 58.970 37.037 0.00 0.00 0.00 3.35
2706 3287 8.123639 TGTTACTCTTTTCACTACTATGCTCT 57.876 34.615 0.00 0.00 0.00 4.09
2707 3288 8.812329 CATGTTACTCTTTTCACTACTATGCTC 58.188 37.037 0.00 0.00 0.00 4.26
2708 3289 8.531982 TCATGTTACTCTTTTCACTACTATGCT 58.468 33.333 0.00 0.00 0.00 3.79
2709 3290 8.703604 TCATGTTACTCTTTTCACTACTATGC 57.296 34.615 0.00 0.00 0.00 3.14
2710 3291 8.812329 GCTCATGTTACTCTTTTCACTACTATG 58.188 37.037 0.00 0.00 0.00 2.23
2711 3292 8.531982 TGCTCATGTTACTCTTTTCACTACTAT 58.468 33.333 0.00 0.00 0.00 2.12
2712 3293 7.813148 GTGCTCATGTTACTCTTTTCACTACTA 59.187 37.037 0.00 0.00 0.00 1.82
2713 3294 6.647067 GTGCTCATGTTACTCTTTTCACTACT 59.353 38.462 0.00 0.00 0.00 2.57
2714 3295 6.400091 CGTGCTCATGTTACTCTTTTCACTAC 60.400 42.308 0.00 0.00 0.00 2.73
2715 3296 5.633601 CGTGCTCATGTTACTCTTTTCACTA 59.366 40.000 0.00 0.00 0.00 2.74
2716 3297 4.449068 CGTGCTCATGTTACTCTTTTCACT 59.551 41.667 0.00 0.00 0.00 3.41
2717 3298 4.702392 CGTGCTCATGTTACTCTTTTCAC 58.298 43.478 0.00 0.00 0.00 3.18
2718 3299 3.186409 GCGTGCTCATGTTACTCTTTTCA 59.814 43.478 0.00 0.00 0.00 2.69
2719 3300 3.186409 TGCGTGCTCATGTTACTCTTTTC 59.814 43.478 0.00 0.00 0.00 2.29
2720 3301 3.138304 TGCGTGCTCATGTTACTCTTTT 58.862 40.909 0.00 0.00 0.00 2.27
2721 3302 2.766313 TGCGTGCTCATGTTACTCTTT 58.234 42.857 0.00 0.00 0.00 2.52
2722 3303 2.455674 TGCGTGCTCATGTTACTCTT 57.544 45.000 0.00 0.00 0.00 2.85
2723 3304 2.069273 GTTGCGTGCTCATGTTACTCT 58.931 47.619 0.00 0.00 0.00 3.24
2724 3305 2.069273 AGTTGCGTGCTCATGTTACTC 58.931 47.619 0.00 0.00 0.00 2.59
2725 3306 2.069273 GAGTTGCGTGCTCATGTTACT 58.931 47.619 0.00 0.00 33.45 2.24
2726 3307 2.069273 AGAGTTGCGTGCTCATGTTAC 58.931 47.619 0.00 0.00 35.55 2.50
2727 3308 2.455674 AGAGTTGCGTGCTCATGTTA 57.544 45.000 0.00 0.00 35.55 2.41
2728 3309 1.265095 CAAGAGTTGCGTGCTCATGTT 59.735 47.619 0.00 0.00 35.55 2.71
2729 3310 0.870393 CAAGAGTTGCGTGCTCATGT 59.130 50.000 0.00 0.00 35.55 3.21
2730 3311 0.870393 ACAAGAGTTGCGTGCTCATG 59.130 50.000 5.09 5.53 37.60 3.07
2731 3312 1.597742 AACAAGAGTTGCGTGCTCAT 58.402 45.000 5.09 0.00 36.39 2.90
2732 3313 2.232756 TAACAAGAGTTGCGTGCTCA 57.767 45.000 5.09 0.00 38.69 4.26
2733 3314 3.813529 ATTAACAAGAGTTGCGTGCTC 57.186 42.857 0.00 0.00 38.69 4.26
2734 3315 4.062293 TGTATTAACAAGAGTTGCGTGCT 58.938 39.130 0.00 0.00 38.69 4.40
2735 3316 4.394795 CTGTATTAACAAGAGTTGCGTGC 58.605 43.478 0.00 0.00 38.69 5.34
2736 3317 4.152402 AGCTGTATTAACAAGAGTTGCGTG 59.848 41.667 0.00 0.00 38.69 5.34
2737 3318 4.152402 CAGCTGTATTAACAAGAGTTGCGT 59.848 41.667 5.25 0.00 38.69 5.24
2738 3319 4.388773 TCAGCTGTATTAACAAGAGTTGCG 59.611 41.667 14.67 0.00 38.69 4.85
2739 3320 5.862924 TCAGCTGTATTAACAAGAGTTGC 57.137 39.130 14.67 0.00 38.69 4.17
2762 3343 8.026026 TGCGCTCTGTTGATTTATTCATTTTTA 58.974 29.630 9.73 0.00 33.34 1.52
2769 3350 3.685058 GGTGCGCTCTGTTGATTTATTC 58.315 45.455 9.73 0.00 0.00 1.75
2793 3374 1.533469 AACTCCCTCCAGGACGAACG 61.533 60.000 0.00 0.00 40.93 3.95
2797 3378 1.609501 TGGAACTCCCTCCAGGACG 60.610 63.158 0.00 0.00 40.71 4.79
2830 3411 2.993264 GCCTGCCAACACTGCCAT 60.993 61.111 0.00 0.00 0.00 4.40
2863 3444 1.078567 CAGCTGTGAGAAGGGCCTC 60.079 63.158 6.46 0.00 0.00 4.70
2871 3452 0.114364 TACCCTGGTCAGCTGTGAGA 59.886 55.000 14.67 0.00 31.53 3.27
2875 3456 1.729586 TTCTTACCCTGGTCAGCTGT 58.270 50.000 14.67 0.00 0.00 4.40
2885 3466 3.307762 GCCAGTCATCAGTTTCTTACCCT 60.308 47.826 0.00 0.00 0.00 4.34
2927 3511 5.391203 GCCTACAAGTACCCAAAACAATACG 60.391 44.000 0.00 0.00 0.00 3.06
2931 3515 3.886505 CTGCCTACAAGTACCCAAAACAA 59.113 43.478 0.00 0.00 0.00 2.83
2946 3530 2.548067 AGTACACTGTTGTGCTGCCTAC 60.548 50.000 0.00 0.00 45.97 3.18
2949 3533 3.006672 AGTACACTGTTGTGCTGCC 57.993 52.632 0.00 0.00 45.97 4.85
2963 3549 9.023967 ACCGAACACGTATAAATAAATCAGTAC 57.976 33.333 0.00 0.00 0.00 2.73
2983 3569 0.645868 GACAGCTGCGATTACCGAAC 59.354 55.000 15.27 0.00 41.76 3.95
3064 3650 4.766373 ACCAATGTCTGCAAACATATCACA 59.234 37.500 5.99 0.00 38.92 3.58
3127 3713 0.763035 ACCTCAGCCCGTTTGTAGTT 59.237 50.000 0.00 0.00 0.00 2.24
3131 3717 2.594592 GCACCTCAGCCCGTTTGT 60.595 61.111 0.00 0.00 0.00 2.83
3149 3798 0.924090 GGTATTCACGCTCAAGCTCG 59.076 55.000 0.00 0.00 39.32 5.03
3161 3810 1.216977 CCCACAGCGTCGGTATTCA 59.783 57.895 0.00 0.00 0.00 2.57
3172 3821 1.360192 GTTTGCAGTGTCCCACAGC 59.640 57.895 4.98 4.98 45.02 4.40
3173 3822 1.648720 CGTTTGCAGTGTCCCACAG 59.351 57.895 0.00 0.00 36.74 3.66
3174 3823 1.821759 CCGTTTGCAGTGTCCCACA 60.822 57.895 0.00 0.00 36.74 4.17
3175 3824 2.551912 CCCGTTTGCAGTGTCCCAC 61.552 63.158 0.00 0.00 34.10 4.61
3176 3825 2.203280 CCCGTTTGCAGTGTCCCA 60.203 61.111 0.00 0.00 0.00 4.37
3177 3826 3.670377 GCCCGTTTGCAGTGTCCC 61.670 66.667 0.00 0.00 0.00 4.46
3178 3827 0.887387 TAAGCCCGTTTGCAGTGTCC 60.887 55.000 0.00 0.00 0.00 4.02
3179 3828 0.517316 CTAAGCCCGTTTGCAGTGTC 59.483 55.000 0.00 0.00 0.00 3.67
3180 3829 0.889186 CCTAAGCCCGTTTGCAGTGT 60.889 55.000 0.00 0.00 0.00 3.55
3181 3830 0.889186 ACCTAAGCCCGTTTGCAGTG 60.889 55.000 0.00 0.00 0.00 3.66
3182 3831 0.889186 CACCTAAGCCCGTTTGCAGT 60.889 55.000 0.00 0.00 0.00 4.40
3183 3832 1.875963 CACCTAAGCCCGTTTGCAG 59.124 57.895 0.00 0.00 0.00 4.41
3184 3833 2.265182 GCACCTAAGCCCGTTTGCA 61.265 57.895 0.00 0.00 0.00 4.08
3185 3834 2.566529 GCACCTAAGCCCGTTTGC 59.433 61.111 0.00 0.00 0.00 3.68
3193 3842 1.079127 TCAAGCTCGGCACCTAAGC 60.079 57.895 0.00 3.44 36.27 3.09
3194 3843 1.086634 GCTCAAGCTCGGCACCTAAG 61.087 60.000 0.00 0.00 38.21 2.18
3195 3844 1.079127 GCTCAAGCTCGGCACCTAA 60.079 57.895 0.00 0.00 38.21 2.69
3196 3845 2.579201 GCTCAAGCTCGGCACCTA 59.421 61.111 0.00 0.00 38.21 3.08
3197 3846 4.749310 CGCTCAAGCTCGGCACCT 62.749 66.667 0.00 0.00 39.32 4.00
3199 3848 3.482783 GACGCTCAAGCTCGGCAC 61.483 66.667 0.00 0.00 39.32 5.01
3200 3849 2.786539 ATTGACGCTCAAGCTCGGCA 62.787 55.000 0.00 0.00 40.05 5.69
3201 3850 0.806102 TATTGACGCTCAAGCTCGGC 60.806 55.000 0.00 0.00 40.05 5.54
3202 3851 0.924090 GTATTGACGCTCAAGCTCGG 59.076 55.000 0.00 0.00 40.05 4.63
3203 3852 1.585668 CAGTATTGACGCTCAAGCTCG 59.414 52.381 0.00 0.00 40.05 5.03
3204 3853 2.881074 TCAGTATTGACGCTCAAGCTC 58.119 47.619 0.00 0.00 40.05 4.09
3205 3854 3.131933 AGATCAGTATTGACGCTCAAGCT 59.868 43.478 0.00 0.00 40.05 3.74
3206 3855 3.244814 CAGATCAGTATTGACGCTCAAGC 59.755 47.826 0.00 0.00 40.05 4.01
3207 3856 4.676546 TCAGATCAGTATTGACGCTCAAG 58.323 43.478 0.00 0.00 40.05 3.02
3208 3857 4.399303 TCTCAGATCAGTATTGACGCTCAA 59.601 41.667 0.00 3.49 41.09 3.02
3209 3858 3.947834 TCTCAGATCAGTATTGACGCTCA 59.052 43.478 0.00 0.00 35.83 4.26
3210 3859 4.201960 TGTCTCAGATCAGTATTGACGCTC 60.202 45.833 0.00 0.00 35.83 5.03
3211 3860 3.696548 TGTCTCAGATCAGTATTGACGCT 59.303 43.478 0.00 0.00 35.83 5.07
3212 3861 3.794028 GTGTCTCAGATCAGTATTGACGC 59.206 47.826 0.00 0.00 35.83 5.19
3213 3862 4.097135 AGGTGTCTCAGATCAGTATTGACG 59.903 45.833 0.00 0.00 35.83 4.35
3214 3863 5.105554 ACAGGTGTCTCAGATCAGTATTGAC 60.106 44.000 0.00 0.00 35.83 3.18
3215 3864 5.019470 ACAGGTGTCTCAGATCAGTATTGA 58.981 41.667 0.00 0.00 37.81 2.57
3216 3865 5.107824 CACAGGTGTCTCAGATCAGTATTG 58.892 45.833 0.00 0.00 0.00 1.90
3217 3866 4.774726 ACACAGGTGTCTCAGATCAGTATT 59.225 41.667 0.00 0.00 40.24 1.89
3218 3867 4.348486 ACACAGGTGTCTCAGATCAGTAT 58.652 43.478 0.00 0.00 40.24 2.12
3219 3868 3.767711 ACACAGGTGTCTCAGATCAGTA 58.232 45.455 0.00 0.00 40.24 2.74
3220 3869 2.603021 ACACAGGTGTCTCAGATCAGT 58.397 47.619 0.00 0.00 40.24 3.41
3238 3887 1.162698 CGTCGGTAGAGTGGAAGACA 58.837 55.000 0.00 0.00 0.00 3.41
3239 3888 0.450983 CCGTCGGTAGAGTGGAAGAC 59.549 60.000 2.08 0.00 0.00 3.01
3240 3889 0.325933 TCCGTCGGTAGAGTGGAAGA 59.674 55.000 11.88 0.00 31.42 2.87
3241 3890 1.390565 ATCCGTCGGTAGAGTGGAAG 58.609 55.000 11.88 0.00 36.20 3.46
3242 3891 2.715749 TATCCGTCGGTAGAGTGGAA 57.284 50.000 11.88 0.00 36.20 3.53
3244 3893 2.569059 TCTTATCCGTCGGTAGAGTGG 58.431 52.381 11.88 0.00 0.00 4.00
3245 3894 4.066490 AGATCTTATCCGTCGGTAGAGTG 58.934 47.826 11.88 0.00 0.00 3.51
3246 3895 4.066490 CAGATCTTATCCGTCGGTAGAGT 58.934 47.826 11.88 2.67 0.00 3.24
3247 3896 4.316645 TCAGATCTTATCCGTCGGTAGAG 58.683 47.826 11.88 7.59 0.00 2.43
3253 3904 2.605823 GCACCTCAGATCTTATCCGTCG 60.606 54.545 0.00 0.00 0.00 5.12
3260 3911 4.462508 CACTCTTGCACCTCAGATCTTA 57.537 45.455 0.00 0.00 0.00 2.10
3282 3933 4.523943 TCAATCAGGTCCTCAAAACATTGG 59.476 41.667 0.00 0.00 0.00 3.16
3317 3968 1.508632 TTGCTGACAGCTACGGAAAC 58.491 50.000 26.94 0.00 42.97 2.78
3352 4029 5.938125 GTCTGTAGATGCCCTTACAAGAAAA 59.062 40.000 0.00 0.00 0.00 2.29
3374 4051 7.534723 TTGGGGTAGATGTATGTAGTATGTC 57.465 40.000 0.00 0.00 0.00 3.06
3469 4151 5.179045 TCGACGGTCCAAAGATCTTATAC 57.821 43.478 8.75 7.24 0.00 1.47
3472 4154 4.679662 GAATCGACGGTCCAAAGATCTTA 58.320 43.478 8.75 0.00 0.00 2.10
3473 4155 3.522553 GAATCGACGGTCCAAAGATCTT 58.477 45.455 0.88 0.88 0.00 2.40
3475 4157 1.852895 CGAATCGACGGTCCAAAGATC 59.147 52.381 0.00 0.00 0.00 2.75
3476 4158 1.203994 ACGAATCGACGGTCCAAAGAT 59.796 47.619 10.55 0.00 37.61 2.40
3477 4159 0.599558 ACGAATCGACGGTCCAAAGA 59.400 50.000 10.55 0.00 37.61 2.52
3478 4160 2.267188 TACGAATCGACGGTCCAAAG 57.733 50.000 10.55 0.00 37.61 2.77
3479 4161 2.721274 TTACGAATCGACGGTCCAAA 57.279 45.000 10.55 0.00 37.61 3.28
3541 4223 3.604582 ACTCCTGCATTCTACTCTTTGC 58.395 45.455 0.00 0.00 35.67 3.68
3661 4344 2.038269 GGCGCGGTTTTCCTGATCA 61.038 57.895 8.83 0.00 37.95 2.92
3748 4431 0.773644 AGTTCAAGGGTGCTGATGGT 59.226 50.000 0.00 0.00 0.00 3.55
3754 4437 1.302033 CGCTGAGTTCAAGGGTGCT 60.302 57.895 0.00 0.00 0.00 4.40
3769 4452 1.153289 CTCCAAGTATGCTGGCGCT 60.153 57.895 7.64 0.00 36.97 5.92
3908 4591 8.646356 GCATCTATCTAGTTCGAATCAATCTTG 58.354 37.037 0.00 0.00 0.00 3.02
3959 4644 2.616510 GGTGCCTATGTTTCTGAGCTGT 60.617 50.000 0.00 0.00 0.00 4.40
3979 4664 5.473162 TGTTGGACAGTTTTGATGTCTATGG 59.527 40.000 6.10 0.00 45.18 2.74
3994 4679 7.155328 AGTCATTTACTAGTTCTGTTGGACAG 58.845 38.462 0.00 1.71 41.36 3.51
4074 4759 4.633565 GCTGTAGCTGAAGATAAAACTGCT 59.366 41.667 0.00 0.00 40.64 4.24
4155 4840 6.097839 TGTGTCTGTTTCTGTCTTAGGTTACT 59.902 38.462 0.00 0.00 0.00 2.24
4180 4865 1.727467 GTGCGCTGGTGTCAGTTTT 59.273 52.632 9.73 0.00 42.78 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.