Multiple sequence alignment - TraesCS6A01G340100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G340100 chr6A 100.000 3058 0 0 1 3058 573415434 573412377 0.000000e+00 5648.0
1 TraesCS6A01G340100 chr6B 90.270 1665 97 38 481 2094 645360566 645358916 0.000000e+00 2117.0
2 TraesCS6A01G340100 chr6B 87.480 615 46 15 2401 2997 645358443 645357842 0.000000e+00 680.0
3 TraesCS6A01G340100 chr6B 86.111 180 12 5 2092 2258 645358686 645358507 6.740000e-42 182.0
4 TraesCS6A01G340100 chr6D 90.161 1677 85 42 481 2094 428650779 428649120 0.000000e+00 2109.0
5 TraesCS6A01G340100 chr6D 90.610 607 46 6 2399 2997 428648651 428648048 0.000000e+00 795.0
6 TraesCS6A01G340100 chr6D 86.782 174 12 6 2092 2254 428648890 428648717 1.870000e-42 183.0
7 TraesCS6A01G340100 chr7B 82.353 442 60 9 28 466 241109709 241110135 4.820000e-98 368.0
8 TraesCS6A01G340100 chr7B 80.899 445 66 11 28 469 517121909 517121481 1.760000e-87 333.0
9 TraesCS6A01G340100 chr1D 83.871 341 45 5 59 398 255497088 255497419 1.770000e-82 316.0
10 TraesCS6A01G340100 chr3D 81.616 359 52 8 27 382 120525113 120525460 4.990000e-73 285.0
11 TraesCS6A01G340100 chr5B 78.174 449 76 15 26 469 652526201 652526632 1.810000e-67 267.0
12 TraesCS6A01G340100 chr5B 78.406 389 60 15 27 409 265748961 265749331 6.590000e-57 231.0
13 TraesCS6A01G340100 chrUn 77.462 457 74 17 27 466 290552612 290553056 2.350000e-61 246.0
14 TraesCS6A01G340100 chr5A 77.143 385 73 9 27 409 315320588 315320959 3.090000e-50 209.0
15 TraesCS6A01G340100 chr5D 77.904 353 65 9 32 381 238784720 238784378 1.110000e-49 207.0
16 TraesCS6A01G340100 chr2B 79.825 114 21 2 1196 1308 469613831 469613719 7.030000e-12 82.4
17 TraesCS6A01G340100 chr2A 78.947 114 22 2 1196 1308 534318608 534318496 3.270000e-10 76.8
18 TraesCS6A01G340100 chr2D 77.679 112 23 2 1198 1308 396425467 396425357 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G340100 chr6A 573412377 573415434 3057 True 5648 5648 100.000000 1 3058 1 chr6A.!!$R1 3057
1 TraesCS6A01G340100 chr6B 645357842 645360566 2724 True 993 2117 87.953667 481 2997 3 chr6B.!!$R1 2516
2 TraesCS6A01G340100 chr6D 428648048 428650779 2731 True 1029 2109 89.184333 481 2997 3 chr6D.!!$R1 2516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.033503 TGTGATGAGCGAGGGGTAGA 60.034 55.0 0.0 0.0 0.0 2.59 F
671 678 0.036858 GAGTCAGCCCTGTTGTCTCC 60.037 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1487 1542 0.323816 AGCAGTCGTCCTCCATGAGA 60.324 55.0 0.00 0.0 0.00 3.27 R
2351 2680 0.038709 AGCGCGGCTAGATCTCAATC 60.039 55.0 8.83 0.0 36.99 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.071540 ACATGAGTGTTGTGATGAGCG 58.928 47.619 0.00 0.00 34.01 5.03
24 25 2.289010 ACATGAGTGTTGTGATGAGCGA 60.289 45.455 0.00 0.00 34.01 4.93
25 26 2.070262 TGAGTGTTGTGATGAGCGAG 57.930 50.000 0.00 0.00 0.00 5.03
26 27 1.337167 TGAGTGTTGTGATGAGCGAGG 60.337 52.381 0.00 0.00 0.00 4.63
27 28 0.036952 AGTGTTGTGATGAGCGAGGG 60.037 55.000 0.00 0.00 0.00 4.30
28 29 1.021390 GTGTTGTGATGAGCGAGGGG 61.021 60.000 0.00 0.00 0.00 4.79
29 30 1.296715 GTTGTGATGAGCGAGGGGT 59.703 57.895 0.00 0.00 0.00 4.95
30 31 0.535335 GTTGTGATGAGCGAGGGGTA 59.465 55.000 0.00 0.00 0.00 3.69
31 32 0.824109 TTGTGATGAGCGAGGGGTAG 59.176 55.000 0.00 0.00 0.00 3.18
32 33 0.033503 TGTGATGAGCGAGGGGTAGA 60.034 55.000 0.00 0.00 0.00 2.59
33 34 1.333177 GTGATGAGCGAGGGGTAGAT 58.667 55.000 0.00 0.00 0.00 1.98
34 35 2.158519 TGTGATGAGCGAGGGGTAGATA 60.159 50.000 0.00 0.00 0.00 1.98
35 36 3.093057 GTGATGAGCGAGGGGTAGATAT 58.907 50.000 0.00 0.00 0.00 1.63
36 37 3.129638 GTGATGAGCGAGGGGTAGATATC 59.870 52.174 0.00 0.00 0.00 1.63
37 38 2.971901 TGAGCGAGGGGTAGATATCA 57.028 50.000 5.32 0.00 0.00 2.15
38 39 2.796557 TGAGCGAGGGGTAGATATCAG 58.203 52.381 5.32 0.00 0.00 2.90
39 40 2.096248 GAGCGAGGGGTAGATATCAGG 58.904 57.143 5.32 0.00 0.00 3.86
40 41 1.429687 AGCGAGGGGTAGATATCAGGT 59.570 52.381 5.32 0.00 0.00 4.00
41 42 1.546476 GCGAGGGGTAGATATCAGGTG 59.454 57.143 5.32 0.00 0.00 4.00
42 43 2.818216 GCGAGGGGTAGATATCAGGTGA 60.818 54.545 5.32 0.00 0.00 4.02
43 44 3.702792 CGAGGGGTAGATATCAGGTGAT 58.297 50.000 5.32 0.00 38.51 3.06
44 45 4.856509 CGAGGGGTAGATATCAGGTGATA 58.143 47.826 5.32 2.19 40.85 2.15
45 46 4.641094 CGAGGGGTAGATATCAGGTGATAC 59.359 50.000 5.32 0.00 39.57 2.24
46 47 4.949121 AGGGGTAGATATCAGGTGATACC 58.051 47.826 5.32 6.75 39.57 2.73
47 48 4.360140 AGGGGTAGATATCAGGTGATACCA 59.640 45.833 14.97 0.00 41.95 3.25
48 49 5.017866 AGGGGTAGATATCAGGTGATACCAT 59.982 44.000 14.97 4.34 41.95 3.55
49 50 5.364157 GGGGTAGATATCAGGTGATACCATC 59.636 48.000 14.97 3.53 41.95 3.51
50 51 5.364157 GGGTAGATATCAGGTGATACCATCC 59.636 48.000 14.97 7.71 41.95 3.51
51 52 6.198639 GGTAGATATCAGGTGATACCATCCT 58.801 44.000 5.32 0.00 41.95 3.24
52 53 6.670027 GGTAGATATCAGGTGATACCATCCTT 59.330 42.308 5.32 0.00 41.95 3.36
53 54 6.865834 AGATATCAGGTGATACCATCCTTC 57.134 41.667 5.32 0.00 41.95 3.46
54 55 6.326161 AGATATCAGGTGATACCATCCTTCA 58.674 40.000 5.32 0.00 41.95 3.02
55 56 4.696479 ATCAGGTGATACCATCCTTCAC 57.304 45.455 0.28 0.00 41.95 3.18
56 57 3.449918 TCAGGTGATACCATCCTTCACA 58.550 45.455 0.28 0.00 41.95 3.58
57 58 4.040047 TCAGGTGATACCATCCTTCACAT 58.960 43.478 0.28 0.00 41.95 3.21
58 59 4.132336 CAGGTGATACCATCCTTCACATG 58.868 47.826 3.06 3.06 43.10 3.21
59 60 2.880890 GGTGATACCATCCTTCACATGC 59.119 50.000 0.00 0.00 41.17 4.06
60 61 3.434167 GGTGATACCATCCTTCACATGCT 60.434 47.826 0.00 0.00 41.17 3.79
61 62 3.812053 GTGATACCATCCTTCACATGCTC 59.188 47.826 0.00 0.00 39.59 4.26
62 63 3.181451 TGATACCATCCTTCACATGCTCC 60.181 47.826 0.00 0.00 0.00 4.70
63 64 0.257039 ACCATCCTTCACATGCTCCC 59.743 55.000 0.00 0.00 0.00 4.30
64 65 0.256752 CCATCCTTCACATGCTCCCA 59.743 55.000 0.00 0.00 0.00 4.37
65 66 1.386533 CATCCTTCACATGCTCCCAC 58.613 55.000 0.00 0.00 0.00 4.61
66 67 0.107508 ATCCTTCACATGCTCCCACG 60.108 55.000 0.00 0.00 0.00 4.94
67 68 1.191489 TCCTTCACATGCTCCCACGA 61.191 55.000 0.00 0.00 0.00 4.35
68 69 0.107508 CCTTCACATGCTCCCACGAT 60.108 55.000 0.00 0.00 0.00 3.73
69 70 1.293924 CTTCACATGCTCCCACGATC 58.706 55.000 0.00 0.00 0.00 3.69
70 71 0.107703 TTCACATGCTCCCACGATCC 60.108 55.000 0.00 0.00 0.00 3.36
71 72 1.221566 CACATGCTCCCACGATCCA 59.778 57.895 0.00 0.00 0.00 3.41
72 73 0.392863 CACATGCTCCCACGATCCAA 60.393 55.000 0.00 0.00 0.00 3.53
73 74 0.327924 ACATGCTCCCACGATCCAAA 59.672 50.000 0.00 0.00 0.00 3.28
74 75 1.064463 ACATGCTCCCACGATCCAAAT 60.064 47.619 0.00 0.00 0.00 2.32
75 76 2.026641 CATGCTCCCACGATCCAAATT 58.973 47.619 0.00 0.00 0.00 1.82
76 77 2.214376 TGCTCCCACGATCCAAATTT 57.786 45.000 0.00 0.00 0.00 1.82
77 78 3.358111 TGCTCCCACGATCCAAATTTA 57.642 42.857 0.00 0.00 0.00 1.40
78 79 3.897239 TGCTCCCACGATCCAAATTTAT 58.103 40.909 0.00 0.00 0.00 1.40
79 80 5.042463 TGCTCCCACGATCCAAATTTATA 57.958 39.130 0.00 0.00 0.00 0.98
80 81 5.441500 TGCTCCCACGATCCAAATTTATAA 58.558 37.500 0.00 0.00 0.00 0.98
81 82 5.888724 TGCTCCCACGATCCAAATTTATAAA 59.111 36.000 0.00 0.00 0.00 1.40
82 83 6.378564 TGCTCCCACGATCCAAATTTATAAAA 59.621 34.615 1.21 0.00 0.00 1.52
83 84 7.093727 TGCTCCCACGATCCAAATTTATAAAAA 60.094 33.333 1.21 0.00 0.00 1.94
84 85 7.926018 GCTCCCACGATCCAAATTTATAAAAAT 59.074 33.333 1.21 0.00 36.87 1.82
85 86 9.463443 CTCCCACGATCCAAATTTATAAAAATC 57.537 33.333 1.21 1.15 34.12 2.17
86 87 8.132362 TCCCACGATCCAAATTTATAAAAATCG 58.868 33.333 18.40 18.40 34.12 3.34
87 88 7.918562 CCCACGATCCAAATTTATAAAAATCGT 59.081 33.333 19.18 19.18 34.12 3.73
88 89 9.938670 CCACGATCCAAATTTATAAAAATCGTA 57.061 29.630 21.72 4.76 34.12 3.43
110 111 9.582431 TCGTATTTAGGTCTTACAAGAATTCTG 57.418 33.333 9.17 6.08 36.68 3.02
111 112 9.582431 CGTATTTAGGTCTTACAAGAATTCTGA 57.418 33.333 9.17 0.00 36.68 3.27
139 140 6.713762 AAAATTGTGGATGTTCAGAAGACA 57.286 33.333 0.00 0.00 0.00 3.41
140 141 6.906157 AAATTGTGGATGTTCAGAAGACAT 57.094 33.333 0.00 0.00 0.00 3.06
141 142 8.408043 AAAATTGTGGATGTTCAGAAGACATA 57.592 30.769 0.00 0.00 0.00 2.29
142 143 8.585471 AAATTGTGGATGTTCAGAAGACATAT 57.415 30.769 0.00 0.00 0.00 1.78
143 144 6.990341 TTGTGGATGTTCAGAAGACATATG 57.010 37.500 0.00 0.00 0.00 1.78
144 145 6.053632 TGTGGATGTTCAGAAGACATATGT 57.946 37.500 8.43 8.43 0.00 2.29
145 146 6.475504 TGTGGATGTTCAGAAGACATATGTT 58.524 36.000 10.30 0.00 0.00 2.71
146 147 6.942005 TGTGGATGTTCAGAAGACATATGTTT 59.058 34.615 10.30 0.50 0.00 2.83
147 148 7.094677 TGTGGATGTTCAGAAGACATATGTTTG 60.095 37.037 10.30 6.98 0.00 2.93
148 149 6.127925 TGGATGTTCAGAAGACATATGTTTGC 60.128 38.462 10.30 2.61 0.00 3.68
149 150 6.127925 GGATGTTCAGAAGACATATGTTTGCA 60.128 38.462 10.30 2.22 0.00 4.08
150 151 6.822667 TGTTCAGAAGACATATGTTTGCAT 57.177 33.333 10.30 0.00 39.03 3.96
151 152 6.845302 TGTTCAGAAGACATATGTTTGCATC 58.155 36.000 10.30 0.13 36.58 3.91
152 153 6.656270 TGTTCAGAAGACATATGTTTGCATCT 59.344 34.615 10.30 2.56 36.58 2.90
153 154 6.915544 TCAGAAGACATATGTTTGCATCTC 57.084 37.500 10.30 0.00 36.58 2.75
154 155 5.819379 TCAGAAGACATATGTTTGCATCTCC 59.181 40.000 10.30 0.00 36.58 3.71
155 156 5.821470 CAGAAGACATATGTTTGCATCTCCT 59.179 40.000 10.30 0.00 36.58 3.69
156 157 6.988580 CAGAAGACATATGTTTGCATCTCCTA 59.011 38.462 10.30 0.00 36.58 2.94
157 158 7.496920 CAGAAGACATATGTTTGCATCTCCTAA 59.503 37.037 10.30 0.00 36.58 2.69
158 159 8.049117 AGAAGACATATGTTTGCATCTCCTAAA 58.951 33.333 10.30 0.00 36.58 1.85
159 160 8.579850 AAGACATATGTTTGCATCTCCTAAAA 57.420 30.769 10.30 0.00 36.58 1.52
160 161 8.579850 AGACATATGTTTGCATCTCCTAAAAA 57.420 30.769 10.30 0.00 36.58 1.94
192 193 7.589574 TCGAGATTCGAAATGTACATTGAAA 57.410 32.000 21.46 15.29 46.90 2.69
193 194 8.024146 TCGAGATTCGAAATGTACATTGAAAA 57.976 30.769 21.46 14.97 46.90 2.29
194 195 8.499967 TCGAGATTCGAAATGTACATTGAAAAA 58.500 29.630 21.46 13.40 46.90 1.94
195 196 8.567221 CGAGATTCGAAATGTACATTGAAAAAC 58.433 33.333 21.46 13.36 43.74 2.43
196 197 9.393249 GAGATTCGAAATGTACATTGAAAAACA 57.607 29.630 21.46 3.62 0.00 2.83
197 198 9.743057 AGATTCGAAATGTACATTGAAAAACAA 57.257 25.926 21.46 8.40 42.95 2.83
221 222 7.595819 AAAAAGACAAATCCATAGGTGAACA 57.404 32.000 0.00 0.00 0.00 3.18
222 223 6.824305 AAAGACAAATCCATAGGTGAACAG 57.176 37.500 0.00 0.00 0.00 3.16
223 224 5.505181 AGACAAATCCATAGGTGAACAGT 57.495 39.130 0.00 0.00 0.00 3.55
224 225 5.248640 AGACAAATCCATAGGTGAACAGTG 58.751 41.667 0.00 0.00 0.00 3.66
225 226 3.758554 ACAAATCCATAGGTGAACAGTGC 59.241 43.478 0.00 0.00 0.00 4.40
226 227 2.717639 ATCCATAGGTGAACAGTGCC 57.282 50.000 0.00 0.00 0.00 5.01
227 228 1.357137 TCCATAGGTGAACAGTGCCA 58.643 50.000 0.00 0.00 0.00 4.92
228 229 1.915489 TCCATAGGTGAACAGTGCCAT 59.085 47.619 0.00 0.00 0.00 4.40
229 230 2.308570 TCCATAGGTGAACAGTGCCATT 59.691 45.455 0.00 0.00 0.00 3.16
230 231 3.091545 CCATAGGTGAACAGTGCCATTT 58.908 45.455 0.00 0.00 0.00 2.32
231 232 3.511146 CCATAGGTGAACAGTGCCATTTT 59.489 43.478 0.00 0.00 0.00 1.82
232 233 4.021192 CCATAGGTGAACAGTGCCATTTTT 60.021 41.667 0.00 0.00 0.00 1.94
233 234 3.457610 AGGTGAACAGTGCCATTTTTG 57.542 42.857 0.00 0.00 0.00 2.44
234 235 3.030291 AGGTGAACAGTGCCATTTTTGA 58.970 40.909 0.00 0.00 0.00 2.69
235 236 3.123050 GGTGAACAGTGCCATTTTTGAC 58.877 45.455 0.00 0.00 0.00 3.18
236 237 3.430098 GGTGAACAGTGCCATTTTTGACA 60.430 43.478 0.00 0.00 0.00 3.58
237 238 3.551485 GTGAACAGTGCCATTTTTGACAC 59.449 43.478 0.00 0.00 0.00 3.67
238 239 3.446873 TGAACAGTGCCATTTTTGACACT 59.553 39.130 0.00 0.00 43.92 3.55
242 243 4.045636 AGTGCCATTTTTGACACTGTTC 57.954 40.909 0.00 0.00 41.63 3.18
243 244 3.446873 AGTGCCATTTTTGACACTGTTCA 59.553 39.130 0.00 0.00 41.63 3.18
244 245 4.099881 AGTGCCATTTTTGACACTGTTCAT 59.900 37.500 0.00 0.00 41.63 2.57
245 246 4.209703 GTGCCATTTTTGACACTGTTCATG 59.790 41.667 0.00 0.00 0.00 3.07
246 247 3.742369 GCCATTTTTGACACTGTTCATGG 59.258 43.478 0.00 0.00 0.00 3.66
247 248 4.740334 GCCATTTTTGACACTGTTCATGGT 60.740 41.667 0.00 0.00 28.47 3.55
248 249 5.358922 CCATTTTTGACACTGTTCATGGTT 58.641 37.500 0.00 0.00 0.00 3.67
249 250 5.816777 CCATTTTTGACACTGTTCATGGTTT 59.183 36.000 0.00 0.00 0.00 3.27
250 251 6.238157 CCATTTTTGACACTGTTCATGGTTTG 60.238 38.462 0.00 0.00 0.00 2.93
251 252 5.398603 TTTTGACACTGTTCATGGTTTGT 57.601 34.783 0.00 0.00 0.00 2.83
252 253 4.368874 TTGACACTGTTCATGGTTTGTG 57.631 40.909 0.00 0.78 0.00 3.33
253 254 2.687425 TGACACTGTTCATGGTTTGTGG 59.313 45.455 12.01 0.00 0.00 4.17
254 255 2.687935 GACACTGTTCATGGTTTGTGGT 59.312 45.455 12.01 0.00 0.00 4.16
255 256 3.096092 ACACTGTTCATGGTTTGTGGTT 58.904 40.909 12.01 0.00 0.00 3.67
256 257 3.513515 ACACTGTTCATGGTTTGTGGTTT 59.486 39.130 12.01 0.00 0.00 3.27
257 258 3.864583 CACTGTTCATGGTTTGTGGTTTG 59.135 43.478 0.00 0.00 0.00 2.93
258 259 3.513515 ACTGTTCATGGTTTGTGGTTTGT 59.486 39.130 0.00 0.00 0.00 2.83
259 260 4.111916 CTGTTCATGGTTTGTGGTTTGTC 58.888 43.478 0.00 0.00 0.00 3.18
260 261 3.766591 TGTTCATGGTTTGTGGTTTGTCT 59.233 39.130 0.00 0.00 0.00 3.41
261 262 4.221703 TGTTCATGGTTTGTGGTTTGTCTT 59.778 37.500 0.00 0.00 0.00 3.01
262 263 4.647424 TCATGGTTTGTGGTTTGTCTTC 57.353 40.909 0.00 0.00 0.00 2.87
263 264 4.277476 TCATGGTTTGTGGTTTGTCTTCT 58.723 39.130 0.00 0.00 0.00 2.85
264 265 4.709397 TCATGGTTTGTGGTTTGTCTTCTT 59.291 37.500 0.00 0.00 0.00 2.52
265 266 5.186797 TCATGGTTTGTGGTTTGTCTTCTTT 59.813 36.000 0.00 0.00 0.00 2.52
266 267 5.476091 TGGTTTGTGGTTTGTCTTCTTTT 57.524 34.783 0.00 0.00 0.00 2.27
267 268 5.233988 TGGTTTGTGGTTTGTCTTCTTTTG 58.766 37.500 0.00 0.00 0.00 2.44
268 269 5.011125 TGGTTTGTGGTTTGTCTTCTTTTGA 59.989 36.000 0.00 0.00 0.00 2.69
269 270 5.347635 GGTTTGTGGTTTGTCTTCTTTTGAC 59.652 40.000 0.00 0.00 35.21 3.18
270 271 5.713792 TTGTGGTTTGTCTTCTTTTGACA 57.286 34.783 0.00 0.00 41.94 3.58
271 272 5.054390 TGTGGTTTGTCTTCTTTTGACAC 57.946 39.130 0.00 0.00 43.13 3.67
272 273 4.764823 TGTGGTTTGTCTTCTTTTGACACT 59.235 37.500 0.00 0.00 43.13 3.55
273 274 5.941058 TGTGGTTTGTCTTCTTTTGACACTA 59.059 36.000 0.00 0.00 43.13 2.74
274 275 6.601613 TGTGGTTTGTCTTCTTTTGACACTAT 59.398 34.615 0.00 0.00 43.13 2.12
275 276 7.122055 TGTGGTTTGTCTTCTTTTGACACTATT 59.878 33.333 0.00 0.00 43.13 1.73
276 277 7.644157 GTGGTTTGTCTTCTTTTGACACTATTC 59.356 37.037 0.00 0.00 43.13 1.75
277 278 7.338196 TGGTTTGTCTTCTTTTGACACTATTCA 59.662 33.333 0.00 0.00 43.13 2.57
278 279 8.352942 GGTTTGTCTTCTTTTGACACTATTCAT 58.647 33.333 0.00 0.00 43.13 2.57
279 280 9.736023 GTTTGTCTTCTTTTGACACTATTCATT 57.264 29.630 0.00 0.00 43.13 2.57
280 281 9.950680 TTTGTCTTCTTTTGACACTATTCATTC 57.049 29.630 0.00 0.00 43.13 2.67
281 282 8.908786 TGTCTTCTTTTGACACTATTCATTCT 57.091 30.769 0.00 0.00 39.23 2.40
282 283 9.996554 TGTCTTCTTTTGACACTATTCATTCTA 57.003 29.630 0.00 0.00 39.23 2.10
341 342 9.948964 AGAATTTTGATCTGAAATTTTTAGGGG 57.051 29.630 16.28 0.00 36.96 4.79
342 343 9.725019 GAATTTTGATCTGAAATTTTTAGGGGT 57.275 29.630 16.28 0.00 36.96 4.95
347 348 8.220755 TGATCTGAAATTTTTAGGGGTTATCG 57.779 34.615 0.00 0.00 0.00 2.92
348 349 8.050325 TGATCTGAAATTTTTAGGGGTTATCGA 58.950 33.333 0.00 0.00 0.00 3.59
349 350 7.619964 TCTGAAATTTTTAGGGGTTATCGAC 57.380 36.000 0.00 0.00 0.00 4.20
350 351 7.169591 TCTGAAATTTTTAGGGGTTATCGACA 58.830 34.615 0.00 0.00 0.00 4.35
351 352 7.832187 TCTGAAATTTTTAGGGGTTATCGACAT 59.168 33.333 0.00 0.00 0.00 3.06
352 353 9.116067 CTGAAATTTTTAGGGGTTATCGACATA 57.884 33.333 0.00 0.00 0.00 2.29
353 354 9.635404 TGAAATTTTTAGGGGTTATCGACATAT 57.365 29.630 0.00 0.00 0.00 1.78
354 355 9.893305 GAAATTTTTAGGGGTTATCGACATATG 57.107 33.333 0.00 0.00 0.00 1.78
355 356 6.870971 TTTTTAGGGGTTATCGACATATGC 57.129 37.500 1.58 0.00 0.00 3.14
356 357 5.818678 TTTAGGGGTTATCGACATATGCT 57.181 39.130 1.58 0.00 0.00 3.79
357 358 5.818678 TTAGGGGTTATCGACATATGCTT 57.181 39.130 1.58 0.00 0.00 3.91
358 359 4.706842 AGGGGTTATCGACATATGCTTT 57.293 40.909 1.58 0.00 0.00 3.51
359 360 4.389374 AGGGGTTATCGACATATGCTTTG 58.611 43.478 1.58 0.00 0.00 2.77
360 361 4.134563 GGGGTTATCGACATATGCTTTGT 58.865 43.478 1.58 0.00 0.00 2.83
361 362 4.024048 GGGGTTATCGACATATGCTTTGTG 60.024 45.833 1.58 0.00 0.00 3.33
362 363 4.814234 GGGTTATCGACATATGCTTTGTGA 59.186 41.667 1.58 0.00 0.00 3.58
363 364 5.295787 GGGTTATCGACATATGCTTTGTGAA 59.704 40.000 1.58 0.00 0.00 3.18
364 365 6.192360 GGTTATCGACATATGCTTTGTGAAC 58.808 40.000 1.58 0.00 0.00 3.18
365 366 6.183360 GGTTATCGACATATGCTTTGTGAACA 60.183 38.462 1.58 0.00 0.00 3.18
366 367 7.409697 GTTATCGACATATGCTTTGTGAACAT 58.590 34.615 1.58 0.00 0.00 2.71
367 368 5.469373 TCGACATATGCTTTGTGAACATC 57.531 39.130 1.58 0.00 0.00 3.06
368 369 4.332543 TCGACATATGCTTTGTGAACATCC 59.667 41.667 1.58 0.00 0.00 3.51
369 370 4.094739 CGACATATGCTTTGTGAACATCCA 59.905 41.667 1.58 0.00 0.00 3.41
370 371 5.220912 CGACATATGCTTTGTGAACATCCAT 60.221 40.000 1.58 0.00 0.00 3.41
371 372 6.018016 CGACATATGCTTTGTGAACATCCATA 60.018 38.462 1.58 0.00 0.00 2.74
372 373 7.467131 CGACATATGCTTTGTGAACATCCATAA 60.467 37.037 1.58 0.00 0.00 1.90
373 374 8.065473 ACATATGCTTTGTGAACATCCATAAA 57.935 30.769 1.58 0.00 0.00 1.40
374 375 8.698210 ACATATGCTTTGTGAACATCCATAAAT 58.302 29.630 1.58 0.00 0.00 1.40
375 376 8.974408 CATATGCTTTGTGAACATCCATAAATG 58.026 33.333 0.00 0.00 0.00 2.32
376 377 6.343716 TGCTTTGTGAACATCCATAAATGT 57.656 33.333 0.00 0.00 41.60 2.71
378 379 7.215789 TGCTTTGTGAACATCCATAAATGTTT 58.784 30.769 3.97 0.00 46.99 2.83
379 380 7.714377 TGCTTTGTGAACATCCATAAATGTTTT 59.286 29.630 3.97 0.00 46.99 2.43
380 381 8.558700 GCTTTGTGAACATCCATAAATGTTTTT 58.441 29.630 3.97 0.00 46.99 1.94
410 411 7.432350 TTTTTGAAACATATCCAAATGTGGC 57.568 32.000 0.00 0.00 45.54 5.01
411 412 5.999205 TTGAAACATATCCAAATGTGGCT 57.001 34.783 0.00 0.00 45.54 4.75
412 413 5.999205 TGAAACATATCCAAATGTGGCTT 57.001 34.783 0.00 0.00 45.54 4.35
413 414 5.964758 TGAAACATATCCAAATGTGGCTTC 58.035 37.500 0.00 0.00 45.54 3.86
414 415 5.479724 TGAAACATATCCAAATGTGGCTTCA 59.520 36.000 0.00 0.00 45.54 3.02
415 416 5.999205 AACATATCCAAATGTGGCTTCAA 57.001 34.783 0.00 0.00 45.54 2.69
416 417 5.999205 ACATATCCAAATGTGGCTTCAAA 57.001 34.783 0.00 0.00 45.54 2.69
417 418 6.357579 ACATATCCAAATGTGGCTTCAAAA 57.642 33.333 0.00 0.00 45.54 2.44
418 419 6.767456 ACATATCCAAATGTGGCTTCAAAAA 58.233 32.000 0.00 0.00 45.54 1.94
439 440 4.361451 AAAATTGAAGCACGATAGCAGG 57.639 40.909 0.00 0.00 42.67 4.85
440 441 2.698855 ATTGAAGCACGATAGCAGGT 57.301 45.000 0.00 0.00 42.67 4.00
441 442 1.725641 TTGAAGCACGATAGCAGGTG 58.274 50.000 0.00 0.00 42.67 4.00
442 443 0.894835 TGAAGCACGATAGCAGGTGA 59.105 50.000 0.00 0.00 42.67 4.02
443 444 1.275010 TGAAGCACGATAGCAGGTGAA 59.725 47.619 0.00 0.00 42.67 3.18
444 445 1.929836 GAAGCACGATAGCAGGTGAAG 59.070 52.381 0.00 0.00 42.67 3.02
445 446 0.176680 AGCACGATAGCAGGTGAAGG 59.823 55.000 0.00 0.00 42.67 3.46
446 447 0.175760 GCACGATAGCAGGTGAAGGA 59.824 55.000 0.00 0.00 42.67 3.36
447 448 1.202580 GCACGATAGCAGGTGAAGGAT 60.203 52.381 0.00 0.00 42.67 3.24
448 449 2.477825 CACGATAGCAGGTGAAGGATG 58.522 52.381 0.00 0.00 42.67 3.51
449 450 1.414181 ACGATAGCAGGTGAAGGATGG 59.586 52.381 0.00 0.00 42.67 3.51
450 451 1.414181 CGATAGCAGGTGAAGGATGGT 59.586 52.381 0.00 0.00 0.00 3.55
451 452 2.628178 CGATAGCAGGTGAAGGATGGTA 59.372 50.000 0.00 0.00 0.00 3.25
452 453 3.259374 CGATAGCAGGTGAAGGATGGTAT 59.741 47.826 0.00 0.00 39.59 2.73
453 454 4.619394 CGATAGCAGGTGAAGGATGGTATC 60.619 50.000 11.62 11.62 44.83 2.24
454 455 2.481441 AGCAGGTGAAGGATGGTATCA 58.519 47.619 0.00 0.00 0.00 2.15
455 456 2.171448 AGCAGGTGAAGGATGGTATCAC 59.829 50.000 0.00 0.00 42.08 3.06
465 466 9.574516 GTGAAGGATGGTATCACCTTATATTTT 57.425 33.333 9.11 0.00 42.98 1.82
466 467 9.793259 TGAAGGATGGTATCACCTTATATTTTC 57.207 33.333 9.11 0.00 42.98 2.29
467 468 9.232473 GAAGGATGGTATCACCTTATATTTTCC 57.768 37.037 9.11 0.00 42.98 3.13
468 469 7.699878 AGGATGGTATCACCTTATATTTTCCC 58.300 38.462 0.00 0.00 39.58 3.97
469 470 6.890268 GGATGGTATCACCTTATATTTTCCCC 59.110 42.308 0.00 0.00 39.58 4.81
470 471 5.871834 TGGTATCACCTTATATTTTCCCCG 58.128 41.667 0.00 0.00 39.58 5.73
471 472 4.698780 GGTATCACCTTATATTTTCCCCGC 59.301 45.833 0.00 0.00 34.73 6.13
472 473 2.841215 TCACCTTATATTTTCCCCGCG 58.159 47.619 0.00 0.00 0.00 6.46
473 474 2.435069 TCACCTTATATTTTCCCCGCGA 59.565 45.455 8.23 0.00 0.00 5.87
474 475 3.071892 TCACCTTATATTTTCCCCGCGAT 59.928 43.478 8.23 0.00 0.00 4.58
475 476 3.188460 CACCTTATATTTTCCCCGCGATG 59.812 47.826 8.23 0.00 0.00 3.84
476 477 3.181448 ACCTTATATTTTCCCCGCGATGT 60.181 43.478 8.23 0.00 0.00 3.06
477 478 3.188460 CCTTATATTTTCCCCGCGATGTG 59.812 47.826 8.23 0.00 0.00 3.21
478 479 0.951558 ATATTTTCCCCGCGATGTGC 59.048 50.000 8.23 0.00 41.47 4.57
479 480 1.098712 TATTTTCCCCGCGATGTGCC 61.099 55.000 8.23 0.00 42.08 5.01
494 495 4.393062 CGATGTGCCTCAAGAGTAACAAAT 59.607 41.667 6.28 0.00 0.00 2.32
503 504 7.094377 GCCTCAAGAGTAACAAATTCACCATAA 60.094 37.037 0.00 0.00 0.00 1.90
505 506 8.918202 TCAAGAGTAACAAATTCACCATAAGT 57.082 30.769 0.00 0.00 0.00 2.24
533 536 1.690219 ATCGATGGGACCACTGGCTC 61.690 60.000 0.00 0.00 0.00 4.70
538 541 4.394712 GGACCACTGGCTCCCACG 62.395 72.222 0.00 0.00 0.00 4.94
541 544 2.227089 GACCACTGGCTCCCACGTAG 62.227 65.000 0.00 0.00 0.00 3.51
545 548 1.274167 CACTGGCTCCCACGTAGTAAA 59.726 52.381 0.00 0.00 41.61 2.01
546 549 1.972795 ACTGGCTCCCACGTAGTAAAA 59.027 47.619 0.00 0.00 41.61 1.52
583 590 6.101997 GTCATCAAATTTGGACTTTGATCCC 58.898 40.000 17.90 0.42 45.57 3.85
586 593 4.458989 TCAAATTTGGACTTTGATCCCTCG 59.541 41.667 17.90 0.00 37.61 4.63
592 599 0.250513 ACTTTGATCCCTCGTGCCTC 59.749 55.000 0.00 0.00 0.00 4.70
602 609 3.574396 TCCCTCGTGCCTCATTATTCTAG 59.426 47.826 0.00 0.00 0.00 2.43
606 613 5.122512 TCGTGCCTCATTATTCTAGTAGC 57.877 43.478 0.00 0.00 0.00 3.58
635 642 5.390356 GCACTGTAGAGCTTTGATTGACTTC 60.390 44.000 0.00 0.00 0.00 3.01
644 651 5.068198 AGCTTTGATTGACTTCTTTGCAGAA 59.932 36.000 0.00 0.00 36.62 3.02
658 665 0.735632 GCAGAAGCACGGAGAGTCAG 60.736 60.000 0.00 0.00 41.58 3.51
662 669 3.386237 GCACGGAGAGTCAGCCCT 61.386 66.667 0.00 0.00 0.00 5.19
663 670 2.575993 CACGGAGAGTCAGCCCTG 59.424 66.667 0.00 0.00 0.00 4.45
671 678 0.036858 GAGTCAGCCCTGTTGTCTCC 60.037 60.000 0.00 0.00 0.00 3.71
716 729 6.735968 GCCTAAACCTTCAATAATTAGCTGGC 60.736 42.308 0.00 0.00 0.00 4.85
756 771 7.851822 AAAATTCGTGTACATTTTAGTGCAG 57.148 32.000 0.00 0.00 34.79 4.41
770 785 2.175202 AGTGCAGGTCTCTAGAACCAG 58.825 52.381 19.72 15.03 30.36 4.00
839 865 4.838152 CAGCCACACCCGGGATCG 62.838 72.222 32.02 17.79 0.00 3.69
1010 1042 0.600518 CATCAGCTCAGCTCCATCGG 60.601 60.000 0.00 0.00 36.40 4.18
1011 1043 2.380433 ATCAGCTCAGCTCCATCGGC 62.380 60.000 0.00 0.00 36.40 5.54
1012 1044 3.079478 AGCTCAGCTCCATCGGCA 61.079 61.111 0.00 0.00 30.62 5.69
1051 1084 0.380024 GCTACTACCCTTCGACGACC 59.620 60.000 0.00 0.00 0.00 4.79
1058 1091 1.592400 CCCTTCGACGACCTACAGCA 61.592 60.000 0.00 0.00 0.00 4.41
1074 1107 3.789858 CAGCAGCAGCACGAGCAG 61.790 66.667 7.77 0.00 45.49 4.24
1114 1150 2.352342 GACGACGACTAGCTAGCTTCTT 59.648 50.000 24.88 8.96 0.00 2.52
1119 1155 2.299521 GACTAGCTAGCTTCTTCCGGA 58.700 52.381 24.88 0.00 0.00 5.14
1122 1158 0.820871 AGCTAGCTTCTTCCGGACAG 59.179 55.000 12.68 5.40 0.00 3.51
1124 1160 0.820871 CTAGCTTCTTCCGGACAGCT 59.179 55.000 27.03 27.03 39.66 4.24
1125 1161 1.205893 CTAGCTTCTTCCGGACAGCTT 59.794 52.381 28.37 16.79 38.43 3.74
1498 1553 3.531207 CGCGGCTCTCATGGAGGA 61.531 66.667 0.00 0.07 42.08 3.71
1499 1554 2.107953 GCGGCTCTCATGGAGGAC 59.892 66.667 11.63 0.00 42.08 3.85
1501 1556 2.121538 CGGCTCTCATGGAGGACGA 61.122 63.158 11.63 0.00 42.08 4.20
1504 1568 0.102120 GCTCTCATGGAGGACGACTG 59.898 60.000 11.63 0.00 42.08 3.51
1713 1780 2.445438 GCGTACGACTTCCTGCAGC 61.445 63.158 21.65 0.00 0.00 5.25
1823 1890 7.170320 CGAGACTCCTACTTCAGATACTAGTTC 59.830 44.444 0.00 0.00 0.00 3.01
1846 1916 7.707624 TCTCTTCTTTTTACGGGTCTATACA 57.292 36.000 0.00 0.00 0.00 2.29
1904 1978 2.546368 TGCAGTTAACCTAAACGTGCAG 59.454 45.455 11.16 0.00 37.96 4.41
1915 1989 5.106555 ACCTAAACGTGCAGAATTTCATCAG 60.107 40.000 0.00 0.00 0.00 2.90
1939 2013 5.336372 GGGTGCATTGCAAAGAGTATTACAA 60.336 40.000 13.94 0.00 41.47 2.41
1949 2023 6.237915 GCAAAGAGTATTACAATTGCATTGCC 60.238 38.462 18.39 0.00 43.98 4.52
1950 2024 6.780457 AAGAGTATTACAATTGCATTGCCT 57.220 33.333 5.05 0.00 43.98 4.75
1978 2052 1.435515 CTGTCTACAGCCGCTCTCC 59.564 63.158 0.00 0.00 37.15 3.71
1979 2053 2.010582 CTGTCTACAGCCGCTCTCCC 62.011 65.000 0.00 0.00 37.15 4.30
1980 2054 2.442272 TCTACAGCCGCTCTCCCC 60.442 66.667 0.00 0.00 0.00 4.81
1981 2055 3.541713 CTACAGCCGCTCTCCCCC 61.542 72.222 0.00 0.00 0.00 5.40
2003 2080 4.539870 CCGCCATATTTGTATCTTGCAAG 58.460 43.478 20.81 20.81 0.00 4.01
2008 2085 5.048504 CCATATTTGTATCTTGCAAGCGGAT 60.049 40.000 21.99 12.74 0.00 4.18
2023 2100 4.361451 AGCGGATAATGCAAAAGTGAAG 57.639 40.909 0.00 0.00 33.85 3.02
2025 2102 3.428045 GCGGATAATGCAAAAGTGAAGCT 60.428 43.478 0.00 0.00 0.00 3.74
2031 2108 7.171337 GGATAATGCAAAAGTGAAGCTGAAAAA 59.829 33.333 0.00 0.00 0.00 1.94
2038 2115 8.337532 GCAAAAGTGAAGCTGAAAAATTGTATT 58.662 29.630 0.00 0.00 0.00 1.89
2049 2126 7.344910 TGAAAAATTGTATTGCCGCTTAAAG 57.655 32.000 0.00 0.00 0.00 1.85
2054 2131 8.546597 AAATTGTATTGCCGCTTAAAGAAAAT 57.453 26.923 0.00 0.00 0.00 1.82
2055 2132 9.646427 AAATTGTATTGCCGCTTAAAGAAAATA 57.354 25.926 0.00 0.00 0.00 1.40
2056 2133 9.646427 AATTGTATTGCCGCTTAAAGAAAATAA 57.354 25.926 0.00 0.00 0.00 1.40
2086 2163 9.793259 AAAATGTATATGGATGTACTACCAAGG 57.207 33.333 13.64 0.00 39.69 3.61
2088 2165 7.534723 TGTATATGGATGTACTACCAAGGTC 57.465 40.000 13.64 7.60 39.69 3.85
2089 2166 7.070629 TGTATATGGATGTACTACCAAGGTCA 58.929 38.462 13.64 9.39 39.69 4.02
2090 2167 4.755266 ATGGATGTACTACCAAGGTCAC 57.245 45.455 13.64 0.00 39.69 3.67
2142 2454 2.991190 GTCCTATGTTTTCGCGTTGAGA 59.009 45.455 5.77 0.00 0.00 3.27
2183 2510 3.493877 ACCGAGATTAGATCAGACGTACG 59.506 47.826 15.01 15.01 0.00 3.67
2187 2514 5.786086 CGAGATTAGATCAGACGTACGATTG 59.214 44.000 24.41 18.43 0.00 2.67
2239 2568 2.233431 ACCAAGCTTTTCAAACAGCACA 59.767 40.909 0.00 0.00 38.61 4.57
2244 2573 4.757594 AGCTTTTCAAACAGCACATTCAA 58.242 34.783 3.93 0.00 38.61 2.69
2274 2603 7.880059 TTTGCTATATTCGTGAGATCTCATG 57.120 36.000 31.16 31.16 45.48 3.07
2275 2604 6.581171 TGCTATATTCGTGAGATCTCATGT 57.419 37.500 33.63 22.86 44.66 3.21
2276 2605 6.616017 TGCTATATTCGTGAGATCTCATGTC 58.384 40.000 33.63 19.53 44.66 3.06
2277 2606 6.207417 TGCTATATTCGTGAGATCTCATGTCA 59.793 38.462 33.63 24.97 44.66 3.58
2278 2607 7.087007 GCTATATTCGTGAGATCTCATGTCAA 58.913 38.462 33.63 25.25 44.66 3.18
2279 2608 7.273164 GCTATATTCGTGAGATCTCATGTCAAG 59.727 40.741 33.63 25.56 44.66 3.02
2280 2609 5.588958 ATTCGTGAGATCTCATGTCAAGA 57.411 39.130 33.63 18.43 44.66 3.02
2281 2610 5.588958 TTCGTGAGATCTCATGTCAAGAT 57.411 39.130 33.63 0.00 44.66 2.40
2282 2611 6.699575 TTCGTGAGATCTCATGTCAAGATA 57.300 37.500 33.63 17.22 44.66 1.98
2283 2612 6.066054 TCGTGAGATCTCATGTCAAGATAC 57.934 41.667 33.63 15.86 44.66 2.24
2284 2613 5.590259 TCGTGAGATCTCATGTCAAGATACA 59.410 40.000 33.63 16.01 44.66 2.29
2285 2614 6.264067 TCGTGAGATCTCATGTCAAGATACAT 59.736 38.462 33.63 0.00 44.66 2.29
2286 2615 7.733893 TCGTGAGATCTCATGTCAAGATACATG 60.734 40.741 33.63 13.05 45.73 3.21
2331 2660 9.729023 TTTTGTATGTTTTGTCACTTGAGTATG 57.271 29.630 0.00 0.00 0.00 2.39
2332 2661 8.669946 TTGTATGTTTTGTCACTTGAGTATGA 57.330 30.769 0.00 0.00 0.00 2.15
2333 2662 8.083462 TGTATGTTTTGTCACTTGAGTATGAC 57.917 34.615 0.00 0.00 44.56 3.06
2334 2663 7.931407 TGTATGTTTTGTCACTTGAGTATGACT 59.069 33.333 6.00 0.00 44.59 3.41
2335 2664 7.807977 ATGTTTTGTCACTTGAGTATGACTT 57.192 32.000 6.00 0.00 44.59 3.01
2336 2665 8.902540 ATGTTTTGTCACTTGAGTATGACTTA 57.097 30.769 6.00 0.00 44.59 2.24
2337 2666 8.725405 TGTTTTGTCACTTGAGTATGACTTAA 57.275 30.769 6.00 0.00 44.59 1.85
2338 2667 9.337396 TGTTTTGTCACTTGAGTATGACTTAAT 57.663 29.630 6.00 0.00 44.59 1.40
2365 2694 5.528043 TCTCAGTTGATTGAGATCTAGCC 57.472 43.478 0.00 0.00 46.42 3.93
2366 2695 4.037327 TCTCAGTTGATTGAGATCTAGCCG 59.963 45.833 0.00 0.00 46.42 5.52
2367 2696 2.799412 CAGTTGATTGAGATCTAGCCGC 59.201 50.000 0.00 0.00 33.28 6.53
2368 2697 1.789464 GTTGATTGAGATCTAGCCGCG 59.211 52.381 0.00 0.00 33.28 6.46
2369 2698 0.319040 TGATTGAGATCTAGCCGCGC 60.319 55.000 0.00 0.00 33.28 6.86
2370 2699 0.038709 GATTGAGATCTAGCCGCGCT 60.039 55.000 5.56 4.15 43.41 5.92
2371 2700 0.038709 ATTGAGATCTAGCCGCGCTC 60.039 55.000 5.56 0.00 40.44 5.03
2372 2701 1.103987 TTGAGATCTAGCCGCGCTCT 61.104 55.000 5.56 4.92 40.44 4.09
2373 2702 1.103987 TGAGATCTAGCCGCGCTCTT 61.104 55.000 5.56 0.00 40.44 2.85
2374 2703 0.875728 GAGATCTAGCCGCGCTCTTA 59.124 55.000 5.56 0.00 40.44 2.10
2375 2704 0.594110 AGATCTAGCCGCGCTCTTAC 59.406 55.000 5.56 0.00 40.44 2.34
2376 2705 0.594110 GATCTAGCCGCGCTCTTACT 59.406 55.000 5.56 0.00 40.44 2.24
2377 2706 1.001158 GATCTAGCCGCGCTCTTACTT 60.001 52.381 5.56 0.00 40.44 2.24
2378 2707 1.671979 TCTAGCCGCGCTCTTACTTA 58.328 50.000 5.56 0.00 40.44 2.24
2381 2710 2.311124 AGCCGCGCTCTTACTTAATT 57.689 45.000 5.56 0.00 30.62 1.40
2425 2783 5.534654 CACAAGGAGGGAAGAAACAATTACA 59.465 40.000 0.00 0.00 0.00 2.41
2429 2787 4.462834 GGAGGGAAGAAACAATTACAAGGG 59.537 45.833 0.00 0.00 0.00 3.95
2439 2797 5.784578 ACAATTACAAGGGTGGAAGAAAC 57.215 39.130 0.00 0.00 28.53 2.78
2447 2805 1.179174 GGTGGAAGAAACAGCACCCC 61.179 60.000 0.00 0.00 36.42 4.95
2451 2809 0.034896 GAAGAAACAGCACCCCGAGA 59.965 55.000 0.00 0.00 0.00 4.04
2462 2820 1.883275 CACCCCGAGACTAGCTAGATG 59.117 57.143 27.45 12.46 0.00 2.90
2463 2821 1.202952 ACCCCGAGACTAGCTAGATGG 60.203 57.143 27.45 19.55 0.00 3.51
2479 2837 3.016736 AGATGGGGCAGAATAAACGTTG 58.983 45.455 0.00 0.00 0.00 4.10
2508 2868 2.493278 GCAGCCAGGTGAAACAACATAT 59.507 45.455 0.04 0.00 39.98 1.78
2509 2869 3.694072 GCAGCCAGGTGAAACAACATATA 59.306 43.478 0.04 0.00 39.98 0.86
2545 2905 4.688021 CCTACTTTTCTTCAGAGGATCGG 58.312 47.826 0.00 0.00 42.67 4.18
2616 2976 6.748333 AAAATCTCGCTCTGATTGATGAAA 57.252 33.333 0.00 0.00 34.74 2.69
2626 2986 7.692705 CGCTCTGATTGATGAAAATATATGCAG 59.307 37.037 0.00 0.00 0.00 4.41
2629 2989 7.395206 TCTGATTGATGAAAATATATGCAGGGG 59.605 37.037 0.00 0.00 0.00 4.79
2653 3013 1.208052 TCAAGGGTAGCTGCATGAGAC 59.792 52.381 3.61 0.00 0.00 3.36
2682 3042 3.387374 ACTCAATTCCATGTGCAAACCAA 59.613 39.130 0.00 0.00 0.00 3.67
2757 3121 0.179097 GCCCTAGCTAGGCGCATATC 60.179 60.000 31.97 15.13 41.41 1.63
2784 3148 2.159653 GCAACTTGCGATGGTAGACAAG 60.160 50.000 0.00 0.00 43.99 3.16
2829 3196 1.423395 CCGAATAGCAAGATCCGAGC 58.577 55.000 0.00 0.00 0.00 5.03
2847 3214 2.934277 CATACAATGCGCTGTGTGC 58.066 52.632 21.82 0.00 39.75 4.57
2885 3256 3.443052 TGTCTAATCTGGGTCCGGTTTA 58.557 45.455 0.00 0.00 0.00 2.01
2919 3291 0.875059 GTTCAACTGAGGCCCGAAAG 59.125 55.000 0.00 0.00 0.00 2.62
2957 3334 0.787183 GAGCTGTTGCGTTGTCTCTC 59.213 55.000 0.00 0.00 45.42 3.20
2968 3345 2.297597 CGTTGTCTCTCTTGTCCTTCCT 59.702 50.000 0.00 0.00 0.00 3.36
2997 3374 8.681486 ATGCAGCATCTATCAAACAATTACTA 57.319 30.769 0.52 0.00 0.00 1.82
2998 3375 7.919690 TGCAGCATCTATCAAACAATTACTAC 58.080 34.615 0.00 0.00 0.00 2.73
2999 3376 7.770433 TGCAGCATCTATCAAACAATTACTACT 59.230 33.333 0.00 0.00 0.00 2.57
3000 3377 9.261180 GCAGCATCTATCAAACAATTACTACTA 57.739 33.333 0.00 0.00 0.00 1.82
3033 3410 8.980481 TGGAGTTTTGAGAAATTTTACTCTCT 57.020 30.769 8.02 0.00 39.11 3.10
3034 3411 9.408648 TGGAGTTTTGAGAAATTTTACTCTCTT 57.591 29.630 8.02 0.00 39.11 2.85
3042 3419 9.224267 TGAGAAATTTTACTCTCTTTGAGATGG 57.776 33.333 8.02 0.00 45.39 3.51
3043 3420 8.049655 AGAAATTTTACTCTCTTTGAGATGGC 57.950 34.615 0.00 0.00 45.39 4.40
3044 3421 7.887495 AGAAATTTTACTCTCTTTGAGATGGCT 59.113 33.333 0.00 0.00 45.39 4.75
3045 3422 8.414629 AAATTTTACTCTCTTTGAGATGGCTT 57.585 30.769 0.00 0.00 45.39 4.35
3046 3423 6.808008 TTTTACTCTCTTTGAGATGGCTTG 57.192 37.500 0.00 0.00 45.39 4.01
3047 3424 5.745312 TTACTCTCTTTGAGATGGCTTGA 57.255 39.130 0.00 0.00 45.39 3.02
3048 3425 4.840716 ACTCTCTTTGAGATGGCTTGAT 57.159 40.909 0.00 0.00 45.39 2.57
3049 3426 5.176741 ACTCTCTTTGAGATGGCTTGATT 57.823 39.130 0.00 0.00 45.39 2.57
3050 3427 4.942483 ACTCTCTTTGAGATGGCTTGATTG 59.058 41.667 0.00 0.00 45.39 2.67
3051 3428 3.693085 TCTCTTTGAGATGGCTTGATTGC 59.307 43.478 0.00 0.00 33.35 3.56
3052 3429 5.405202 TCTCTTTGAGATGGCTTGATTGCC 61.405 45.833 0.00 0.00 42.38 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.071540 CGCTCATCACAACACTCATGT 58.928 47.619 0.00 0.00 42.46 3.21
4 5 2.340337 TCGCTCATCACAACACTCATG 58.660 47.619 0.00 0.00 0.00 3.07
5 6 2.614779 CTCGCTCATCACAACACTCAT 58.385 47.619 0.00 0.00 0.00 2.90
6 7 1.337167 CCTCGCTCATCACAACACTCA 60.337 52.381 0.00 0.00 0.00 3.41
7 8 1.354040 CCTCGCTCATCACAACACTC 58.646 55.000 0.00 0.00 0.00 3.51
8 9 0.036952 CCCTCGCTCATCACAACACT 60.037 55.000 0.00 0.00 0.00 3.55
9 10 1.021390 CCCCTCGCTCATCACAACAC 61.021 60.000 0.00 0.00 0.00 3.32
10 11 1.296392 CCCCTCGCTCATCACAACA 59.704 57.895 0.00 0.00 0.00 3.33
11 12 0.535335 TACCCCTCGCTCATCACAAC 59.465 55.000 0.00 0.00 0.00 3.32
12 13 0.824109 CTACCCCTCGCTCATCACAA 59.176 55.000 0.00 0.00 0.00 3.33
13 14 0.033503 TCTACCCCTCGCTCATCACA 60.034 55.000 0.00 0.00 0.00 3.58
14 15 1.333177 ATCTACCCCTCGCTCATCAC 58.667 55.000 0.00 0.00 0.00 3.06
15 16 2.971901 TATCTACCCCTCGCTCATCA 57.028 50.000 0.00 0.00 0.00 3.07
16 17 3.357203 TGATATCTACCCCTCGCTCATC 58.643 50.000 3.98 0.00 0.00 2.92
17 18 3.360867 CTGATATCTACCCCTCGCTCAT 58.639 50.000 3.98 0.00 0.00 2.90
18 19 2.555448 CCTGATATCTACCCCTCGCTCA 60.555 54.545 3.98 0.00 0.00 4.26
19 20 2.096248 CCTGATATCTACCCCTCGCTC 58.904 57.143 3.98 0.00 0.00 5.03
20 21 1.429687 ACCTGATATCTACCCCTCGCT 59.570 52.381 3.98 0.00 0.00 4.93
21 22 1.546476 CACCTGATATCTACCCCTCGC 59.454 57.143 3.98 0.00 0.00 5.03
22 23 3.156288 TCACCTGATATCTACCCCTCG 57.844 52.381 3.98 0.00 0.00 4.63
23 24 4.957327 GGTATCACCTGATATCTACCCCTC 59.043 50.000 3.98 0.00 39.03 4.30
24 25 4.360140 TGGTATCACCTGATATCTACCCCT 59.640 45.833 11.90 0.00 38.60 4.79
25 26 4.684724 TGGTATCACCTGATATCTACCCC 58.315 47.826 11.90 0.46 38.60 4.95
26 27 5.364157 GGATGGTATCACCTGATATCTACCC 59.636 48.000 11.90 1.04 38.60 3.69
27 28 6.198639 AGGATGGTATCACCTGATATCTACC 58.801 44.000 3.98 6.92 38.60 3.18
28 29 7.397476 TGAAGGATGGTATCACCTGATATCTAC 59.603 40.741 3.98 0.00 38.60 2.59
29 30 7.397476 GTGAAGGATGGTATCACCTGATATCTA 59.603 40.741 3.98 0.00 38.60 1.98
30 31 6.212388 GTGAAGGATGGTATCACCTGATATCT 59.788 42.308 3.98 0.00 38.60 1.98
31 32 6.014242 TGTGAAGGATGGTATCACCTGATATC 60.014 42.308 0.00 0.00 42.12 1.63
32 33 5.846164 TGTGAAGGATGGTATCACCTGATAT 59.154 40.000 3.01 0.00 42.12 1.63
33 34 5.215845 TGTGAAGGATGGTATCACCTGATA 58.784 41.667 3.01 0.00 42.12 2.15
34 35 4.040047 TGTGAAGGATGGTATCACCTGAT 58.960 43.478 3.01 0.00 42.12 2.90
35 36 3.449918 TGTGAAGGATGGTATCACCTGA 58.550 45.455 3.01 0.00 42.12 3.86
36 37 3.912496 TGTGAAGGATGGTATCACCTG 57.088 47.619 3.01 0.00 42.12 4.00
37 38 3.434167 GCATGTGAAGGATGGTATCACCT 60.434 47.826 0.00 0.00 42.12 4.00
38 39 2.880890 GCATGTGAAGGATGGTATCACC 59.119 50.000 0.00 0.00 42.12 4.02
39 40 3.812053 GAGCATGTGAAGGATGGTATCAC 59.188 47.826 0.00 0.00 42.90 3.06
40 41 3.181451 GGAGCATGTGAAGGATGGTATCA 60.181 47.826 0.00 0.00 31.75 2.15
41 42 3.406764 GGAGCATGTGAAGGATGGTATC 58.593 50.000 0.00 0.00 31.75 2.24
42 43 2.107204 GGGAGCATGTGAAGGATGGTAT 59.893 50.000 0.00 0.00 31.75 2.73
43 44 1.490490 GGGAGCATGTGAAGGATGGTA 59.510 52.381 0.00 0.00 31.75 3.25
44 45 0.257039 GGGAGCATGTGAAGGATGGT 59.743 55.000 0.00 0.00 34.27 3.55
45 46 0.256752 TGGGAGCATGTGAAGGATGG 59.743 55.000 0.00 0.00 0.00 3.51
46 47 1.386533 GTGGGAGCATGTGAAGGATG 58.613 55.000 0.00 0.00 0.00 3.51
47 48 0.107508 CGTGGGAGCATGTGAAGGAT 60.108 55.000 0.00 0.00 0.00 3.24
48 49 1.191489 TCGTGGGAGCATGTGAAGGA 61.191 55.000 0.00 0.00 0.00 3.36
49 50 0.107508 ATCGTGGGAGCATGTGAAGG 60.108 55.000 0.00 0.00 0.00 3.46
50 51 1.293924 GATCGTGGGAGCATGTGAAG 58.706 55.000 0.00 0.00 0.00 3.02
51 52 0.107703 GGATCGTGGGAGCATGTGAA 60.108 55.000 0.00 0.00 0.00 3.18
52 53 1.264045 TGGATCGTGGGAGCATGTGA 61.264 55.000 0.00 0.00 0.00 3.58
53 54 0.392863 TTGGATCGTGGGAGCATGTG 60.393 55.000 0.00 0.00 0.00 3.21
54 55 0.327924 TTTGGATCGTGGGAGCATGT 59.672 50.000 0.00 0.00 0.00 3.21
55 56 1.683943 ATTTGGATCGTGGGAGCATG 58.316 50.000 0.00 0.00 0.00 4.06
56 57 2.442236 AATTTGGATCGTGGGAGCAT 57.558 45.000 0.00 0.00 0.00 3.79
57 58 2.214376 AAATTTGGATCGTGGGAGCA 57.786 45.000 0.00 0.00 0.00 4.26
58 59 6.385649 TTTATAAATTTGGATCGTGGGAGC 57.614 37.500 0.00 0.00 0.00 4.70
59 60 9.463443 GATTTTTATAAATTTGGATCGTGGGAG 57.537 33.333 0.00 0.00 34.16 4.30
60 61 8.132362 CGATTTTTATAAATTTGGATCGTGGGA 58.868 33.333 0.00 0.00 34.16 4.37
61 62 7.918562 ACGATTTTTATAAATTTGGATCGTGGG 59.081 33.333 20.55 0.83 34.16 4.61
62 63 8.850454 ACGATTTTTATAAATTTGGATCGTGG 57.150 30.769 20.55 6.04 34.16 4.94
84 85 9.582431 CAGAATTCTTGTAAGACCTAAATACGA 57.418 33.333 4.86 0.00 34.13 3.43
85 86 9.582431 TCAGAATTCTTGTAAGACCTAAATACG 57.418 33.333 4.86 0.00 34.13 3.06
115 116 7.111247 TGTCTTCTGAACATCCACAATTTTT 57.889 32.000 0.00 0.00 0.00 1.94
116 117 6.713762 TGTCTTCTGAACATCCACAATTTT 57.286 33.333 0.00 0.00 0.00 1.82
117 118 6.906157 ATGTCTTCTGAACATCCACAATTT 57.094 33.333 0.00 0.00 0.00 1.82
118 119 7.613022 ACATATGTCTTCTGAACATCCACAATT 59.387 33.333 1.41 0.00 0.00 2.32
119 120 7.114754 ACATATGTCTTCTGAACATCCACAAT 58.885 34.615 1.41 0.00 0.00 2.71
120 121 6.475504 ACATATGTCTTCTGAACATCCACAA 58.524 36.000 1.41 0.00 0.00 3.33
121 122 6.053632 ACATATGTCTTCTGAACATCCACA 57.946 37.500 1.41 0.00 0.00 4.17
122 123 6.992063 AACATATGTCTTCTGAACATCCAC 57.008 37.500 9.23 0.00 0.00 4.02
123 124 6.127925 GCAAACATATGTCTTCTGAACATCCA 60.128 38.462 9.23 0.00 0.00 3.41
124 125 6.127925 TGCAAACATATGTCTTCTGAACATCC 60.128 38.462 9.23 0.00 0.00 3.51
125 126 6.845302 TGCAAACATATGTCTTCTGAACATC 58.155 36.000 9.23 0.00 0.00 3.06
126 127 6.822667 TGCAAACATATGTCTTCTGAACAT 57.177 33.333 9.23 1.09 0.00 2.71
127 128 6.656270 AGATGCAAACATATGTCTTCTGAACA 59.344 34.615 9.23 0.37 36.35 3.18
128 129 7.081526 AGATGCAAACATATGTCTTCTGAAC 57.918 36.000 9.23 0.00 36.35 3.18
129 130 6.317140 GGAGATGCAAACATATGTCTTCTGAA 59.683 38.462 9.23 0.00 36.35 3.02
130 131 5.819379 GGAGATGCAAACATATGTCTTCTGA 59.181 40.000 9.23 0.00 36.35 3.27
131 132 5.821470 AGGAGATGCAAACATATGTCTTCTG 59.179 40.000 9.23 5.91 36.35 3.02
132 133 5.999044 AGGAGATGCAAACATATGTCTTCT 58.001 37.500 9.23 9.57 36.35 2.85
133 134 7.792374 TTAGGAGATGCAAACATATGTCTTC 57.208 36.000 9.23 5.00 36.35 2.87
134 135 8.579850 TTTTAGGAGATGCAAACATATGTCTT 57.420 30.769 9.23 3.34 36.35 3.01
135 136 8.579850 TTTTTAGGAGATGCAAACATATGTCT 57.420 30.769 9.23 0.07 36.35 3.41
169 170 8.567221 GTTTTTCAATGTACATTTCGAATCTCG 58.433 33.333 18.50 4.58 42.10 4.04
170 171 9.393249 TGTTTTTCAATGTACATTTCGAATCTC 57.607 29.630 18.50 11.99 0.00 2.75
171 172 9.743057 TTGTTTTTCAATGTACATTTCGAATCT 57.257 25.926 18.50 0.00 0.00 2.40
197 198 7.287696 ACTGTTCACCTATGGATTTGTCTTTTT 59.712 33.333 0.00 0.00 0.00 1.94
198 199 6.777580 ACTGTTCACCTATGGATTTGTCTTTT 59.222 34.615 0.00 0.00 0.00 2.27
199 200 6.207417 CACTGTTCACCTATGGATTTGTCTTT 59.793 38.462 0.00 0.00 0.00 2.52
200 201 5.707298 CACTGTTCACCTATGGATTTGTCTT 59.293 40.000 0.00 0.00 0.00 3.01
201 202 5.248640 CACTGTTCACCTATGGATTTGTCT 58.751 41.667 0.00 0.00 0.00 3.41
202 203 4.142600 GCACTGTTCACCTATGGATTTGTC 60.143 45.833 0.00 0.00 0.00 3.18
203 204 3.758554 GCACTGTTCACCTATGGATTTGT 59.241 43.478 0.00 0.00 0.00 2.83
204 205 3.129287 GGCACTGTTCACCTATGGATTTG 59.871 47.826 0.00 0.00 0.00 2.32
205 206 3.245229 TGGCACTGTTCACCTATGGATTT 60.245 43.478 0.00 0.00 0.00 2.17
206 207 2.308570 TGGCACTGTTCACCTATGGATT 59.691 45.455 0.00 0.00 0.00 3.01
207 208 1.915489 TGGCACTGTTCACCTATGGAT 59.085 47.619 0.00 0.00 0.00 3.41
208 209 1.357137 TGGCACTGTTCACCTATGGA 58.643 50.000 0.00 0.00 0.00 3.41
209 210 2.425143 ATGGCACTGTTCACCTATGG 57.575 50.000 0.00 0.00 0.00 2.74
210 211 4.789012 AAAATGGCACTGTTCACCTATG 57.211 40.909 0.00 0.00 0.00 2.23
211 212 4.832266 TCAAAAATGGCACTGTTCACCTAT 59.168 37.500 0.00 0.00 0.00 2.57
212 213 4.037446 GTCAAAAATGGCACTGTTCACCTA 59.963 41.667 0.00 0.00 0.00 3.08
213 214 3.030291 TCAAAAATGGCACTGTTCACCT 58.970 40.909 0.00 0.00 0.00 4.00
214 215 3.123050 GTCAAAAATGGCACTGTTCACC 58.877 45.455 0.00 0.00 0.00 4.02
215 216 3.551485 GTGTCAAAAATGGCACTGTTCAC 59.449 43.478 6.32 0.00 40.87 3.18
216 217 3.779759 GTGTCAAAAATGGCACTGTTCA 58.220 40.909 6.32 0.00 40.87 3.18
222 223 3.779759 TGAACAGTGTCAAAAATGGCAC 58.220 40.909 5.46 5.46 44.07 5.01
223 224 4.370049 CATGAACAGTGTCAAAAATGGCA 58.630 39.130 0.00 0.00 0.00 4.92
224 225 3.742369 CCATGAACAGTGTCAAAAATGGC 59.258 43.478 0.00 0.00 0.00 4.40
225 226 4.947645 ACCATGAACAGTGTCAAAAATGG 58.052 39.130 15.58 15.58 32.48 3.16
226 227 6.313411 ACAAACCATGAACAGTGTCAAAAATG 59.687 34.615 0.00 0.00 0.00 2.32
227 228 6.313411 CACAAACCATGAACAGTGTCAAAAAT 59.687 34.615 0.00 0.00 0.00 1.82
228 229 5.636965 CACAAACCATGAACAGTGTCAAAAA 59.363 36.000 0.00 0.00 0.00 1.94
229 230 5.167121 CACAAACCATGAACAGTGTCAAAA 58.833 37.500 0.00 0.00 0.00 2.44
230 231 4.381398 CCACAAACCATGAACAGTGTCAAA 60.381 41.667 0.00 0.00 0.00 2.69
231 232 3.130164 CCACAAACCATGAACAGTGTCAA 59.870 43.478 0.00 0.00 0.00 3.18
232 233 2.687425 CCACAAACCATGAACAGTGTCA 59.313 45.455 0.00 0.00 0.00 3.58
233 234 2.687935 ACCACAAACCATGAACAGTGTC 59.312 45.455 0.00 0.00 0.00 3.67
234 235 2.733956 ACCACAAACCATGAACAGTGT 58.266 42.857 0.00 0.00 0.00 3.55
235 236 3.799281 AACCACAAACCATGAACAGTG 57.201 42.857 0.00 0.00 0.00 3.66
236 237 3.513515 ACAAACCACAAACCATGAACAGT 59.486 39.130 0.00 0.00 0.00 3.55
237 238 4.111916 GACAAACCACAAACCATGAACAG 58.888 43.478 0.00 0.00 0.00 3.16
238 239 3.766591 AGACAAACCACAAACCATGAACA 59.233 39.130 0.00 0.00 0.00 3.18
239 240 4.385358 AGACAAACCACAAACCATGAAC 57.615 40.909 0.00 0.00 0.00 3.18
240 241 4.709397 AGAAGACAAACCACAAACCATGAA 59.291 37.500 0.00 0.00 0.00 2.57
241 242 4.277476 AGAAGACAAACCACAAACCATGA 58.723 39.130 0.00 0.00 0.00 3.07
242 243 4.654091 AGAAGACAAACCACAAACCATG 57.346 40.909 0.00 0.00 0.00 3.66
243 244 5.675684 AAAGAAGACAAACCACAAACCAT 57.324 34.783 0.00 0.00 0.00 3.55
244 245 5.011125 TCAAAAGAAGACAAACCACAAACCA 59.989 36.000 0.00 0.00 0.00 3.67
245 246 5.347635 GTCAAAAGAAGACAAACCACAAACC 59.652 40.000 0.00 0.00 36.06 3.27
246 247 5.923684 TGTCAAAAGAAGACAAACCACAAAC 59.076 36.000 0.00 0.00 42.57 2.93
247 248 5.923684 GTGTCAAAAGAAGACAAACCACAAA 59.076 36.000 0.00 0.00 46.50 2.83
248 249 5.242838 AGTGTCAAAAGAAGACAAACCACAA 59.757 36.000 0.00 0.00 46.50 3.33
249 250 4.764823 AGTGTCAAAAGAAGACAAACCACA 59.235 37.500 0.00 0.00 46.50 4.17
250 251 5.310720 AGTGTCAAAAGAAGACAAACCAC 57.689 39.130 0.00 0.00 46.50 4.16
251 252 7.338196 TGAATAGTGTCAAAAGAAGACAAACCA 59.662 33.333 0.00 0.00 46.50 3.67
252 253 7.703328 TGAATAGTGTCAAAAGAAGACAAACC 58.297 34.615 0.00 0.00 46.50 3.27
253 254 9.736023 AATGAATAGTGTCAAAAGAAGACAAAC 57.264 29.630 0.00 0.00 46.50 2.93
254 255 9.950680 GAATGAATAGTGTCAAAAGAAGACAAA 57.049 29.630 0.00 0.00 46.50 2.83
255 256 9.342308 AGAATGAATAGTGTCAAAAGAAGACAA 57.658 29.630 0.00 0.00 46.50 3.18
256 257 8.908786 AGAATGAATAGTGTCAAAAGAAGACA 57.091 30.769 0.00 0.00 43.23 3.41
315 316 9.948964 CCCCTAAAAATTTCAGATCAAAATTCT 57.051 29.630 15.22 10.36 35.75 2.40
316 317 9.725019 ACCCCTAAAAATTTCAGATCAAAATTC 57.275 29.630 15.22 0.00 35.75 2.17
321 322 8.682710 CGATAACCCCTAAAAATTTCAGATCAA 58.317 33.333 0.00 0.00 0.00 2.57
322 323 8.050325 TCGATAACCCCTAAAAATTTCAGATCA 58.950 33.333 0.00 0.00 0.00 2.92
323 324 8.343366 GTCGATAACCCCTAAAAATTTCAGATC 58.657 37.037 0.00 0.00 0.00 2.75
324 325 7.832187 TGTCGATAACCCCTAAAAATTTCAGAT 59.168 33.333 0.00 0.00 0.00 2.90
325 326 7.169591 TGTCGATAACCCCTAAAAATTTCAGA 58.830 34.615 0.00 0.00 0.00 3.27
326 327 7.385778 TGTCGATAACCCCTAAAAATTTCAG 57.614 36.000 0.00 0.00 0.00 3.02
327 328 7.948034 ATGTCGATAACCCCTAAAAATTTCA 57.052 32.000 0.00 0.00 0.00 2.69
328 329 9.893305 CATATGTCGATAACCCCTAAAAATTTC 57.107 33.333 0.00 0.00 0.00 2.17
329 330 8.357402 GCATATGTCGATAACCCCTAAAAATTT 58.643 33.333 4.29 0.00 0.00 1.82
330 331 7.724061 AGCATATGTCGATAACCCCTAAAAATT 59.276 33.333 4.29 0.00 0.00 1.82
331 332 7.231467 AGCATATGTCGATAACCCCTAAAAAT 58.769 34.615 4.29 0.00 0.00 1.82
332 333 6.597562 AGCATATGTCGATAACCCCTAAAAA 58.402 36.000 4.29 0.00 0.00 1.94
333 334 6.182507 AGCATATGTCGATAACCCCTAAAA 57.817 37.500 4.29 0.00 0.00 1.52
334 335 5.818678 AGCATATGTCGATAACCCCTAAA 57.181 39.130 4.29 0.00 0.00 1.85
335 336 5.818678 AAGCATATGTCGATAACCCCTAA 57.181 39.130 4.29 0.00 0.00 2.69
336 337 5.071250 ACAAAGCATATGTCGATAACCCCTA 59.929 40.000 4.29 0.00 0.00 3.53
337 338 4.141482 ACAAAGCATATGTCGATAACCCCT 60.141 41.667 4.29 0.00 0.00 4.79
338 339 4.024048 CACAAAGCATATGTCGATAACCCC 60.024 45.833 4.29 0.00 0.00 4.95
339 340 4.814234 TCACAAAGCATATGTCGATAACCC 59.186 41.667 4.29 0.00 0.00 4.11
340 341 5.984233 TCACAAAGCATATGTCGATAACC 57.016 39.130 4.29 0.00 0.00 2.85
341 342 6.771076 TGTTCACAAAGCATATGTCGATAAC 58.229 36.000 4.29 2.37 0.00 1.89
342 343 6.976636 TGTTCACAAAGCATATGTCGATAA 57.023 33.333 4.29 0.00 0.00 1.75
343 344 6.202762 GGATGTTCACAAAGCATATGTCGATA 59.797 38.462 4.29 0.00 0.00 2.92
344 345 5.008019 GGATGTTCACAAAGCATATGTCGAT 59.992 40.000 4.29 0.00 0.00 3.59
345 346 4.332543 GGATGTTCACAAAGCATATGTCGA 59.667 41.667 4.29 0.00 0.00 4.20
346 347 4.094739 TGGATGTTCACAAAGCATATGTCG 59.905 41.667 4.29 0.00 0.00 4.35
347 348 5.565592 TGGATGTTCACAAAGCATATGTC 57.434 39.130 4.29 0.00 0.00 3.06
348 349 7.643569 TTATGGATGTTCACAAAGCATATGT 57.356 32.000 4.29 0.00 0.00 2.29
349 350 8.974408 CATTTATGGATGTTCACAAAGCATATG 58.026 33.333 0.00 0.00 0.00 1.78
350 351 8.698210 ACATTTATGGATGTTCACAAAGCATAT 58.302 29.630 0.00 0.00 36.92 1.78
351 352 8.065473 ACATTTATGGATGTTCACAAAGCATA 57.935 30.769 0.00 0.00 36.92 3.14
352 353 6.938507 ACATTTATGGATGTTCACAAAGCAT 58.061 32.000 0.00 0.00 36.92 3.79
353 354 6.343716 ACATTTATGGATGTTCACAAAGCA 57.656 33.333 0.00 0.00 36.92 3.91
354 355 7.656707 AAACATTTATGGATGTTCACAAAGC 57.343 32.000 8.42 0.00 46.53 3.51
386 387 7.718753 AAGCCACATTTGGATATGTTTCAAAAA 59.281 29.630 0.86 0.00 42.27 1.94
387 388 7.222872 AAGCCACATTTGGATATGTTTCAAAA 58.777 30.769 0.86 0.00 42.27 2.44
388 389 6.767456 AAGCCACATTTGGATATGTTTCAAA 58.233 32.000 0.86 0.00 42.27 2.69
389 390 6.014755 TGAAGCCACATTTGGATATGTTTCAA 60.015 34.615 0.86 0.00 42.27 2.69
390 391 5.479724 TGAAGCCACATTTGGATATGTTTCA 59.520 36.000 0.86 0.00 42.27 2.69
391 392 5.964758 TGAAGCCACATTTGGATATGTTTC 58.035 37.500 0.86 0.00 42.27 2.78
392 393 5.999205 TGAAGCCACATTTGGATATGTTT 57.001 34.783 0.86 0.00 42.27 2.83
393 394 5.999205 TTGAAGCCACATTTGGATATGTT 57.001 34.783 0.86 0.00 42.27 2.71
394 395 5.999205 TTTGAAGCCACATTTGGATATGT 57.001 34.783 0.86 0.00 42.27 2.29
417 418 4.218417 ACCTGCTATCGTGCTTCAATTTTT 59.782 37.500 0.00 0.00 0.00 1.94
418 419 3.758554 ACCTGCTATCGTGCTTCAATTTT 59.241 39.130 0.00 0.00 0.00 1.82
419 420 3.127548 CACCTGCTATCGTGCTTCAATTT 59.872 43.478 0.00 0.00 0.00 1.82
420 421 2.679837 CACCTGCTATCGTGCTTCAATT 59.320 45.455 0.00 0.00 0.00 2.32
421 422 2.093500 TCACCTGCTATCGTGCTTCAAT 60.093 45.455 0.00 0.00 0.00 2.57
422 423 1.275010 TCACCTGCTATCGTGCTTCAA 59.725 47.619 0.00 0.00 0.00 2.69
423 424 0.894835 TCACCTGCTATCGTGCTTCA 59.105 50.000 0.00 0.00 0.00 3.02
424 425 1.929836 CTTCACCTGCTATCGTGCTTC 59.070 52.381 0.00 0.00 0.00 3.86
425 426 1.406069 CCTTCACCTGCTATCGTGCTT 60.406 52.381 0.00 0.00 0.00 3.91
426 427 0.176680 CCTTCACCTGCTATCGTGCT 59.823 55.000 0.00 0.00 0.00 4.40
427 428 0.175760 TCCTTCACCTGCTATCGTGC 59.824 55.000 0.00 0.00 0.00 5.34
428 429 2.477825 CATCCTTCACCTGCTATCGTG 58.522 52.381 0.00 0.00 0.00 4.35
429 430 1.414181 CCATCCTTCACCTGCTATCGT 59.586 52.381 0.00 0.00 0.00 3.73
430 431 1.414181 ACCATCCTTCACCTGCTATCG 59.586 52.381 0.00 0.00 0.00 2.92
431 432 4.284490 TGATACCATCCTTCACCTGCTATC 59.716 45.833 0.00 0.00 0.00 2.08
432 433 4.040952 GTGATACCATCCTTCACCTGCTAT 59.959 45.833 0.00 0.00 34.95 2.97
433 434 3.388024 GTGATACCATCCTTCACCTGCTA 59.612 47.826 0.00 0.00 34.95 3.49
434 435 2.171448 GTGATACCATCCTTCACCTGCT 59.829 50.000 0.00 0.00 34.95 4.24
435 436 2.565841 GTGATACCATCCTTCACCTGC 58.434 52.381 0.00 0.00 34.95 4.85
439 440 9.574516 AAAATATAAGGTGATACCATCCTTCAC 57.425 33.333 0.28 0.00 41.95 3.18
440 441 9.793259 GAAAATATAAGGTGATACCATCCTTCA 57.207 33.333 0.28 0.00 41.95 3.02
441 442 9.232473 GGAAAATATAAGGTGATACCATCCTTC 57.768 37.037 0.28 0.00 41.95 3.46
442 443 8.170730 GGGAAAATATAAGGTGATACCATCCTT 58.829 37.037 0.28 0.00 41.95 3.36
443 444 7.257419 GGGGAAAATATAAGGTGATACCATCCT 60.257 40.741 0.28 0.00 41.95 3.24
444 445 6.890268 GGGGAAAATATAAGGTGATACCATCC 59.110 42.308 0.28 0.00 41.95 3.51
445 446 6.598064 CGGGGAAAATATAAGGTGATACCATC 59.402 42.308 0.28 0.00 41.95 3.51
446 447 6.481643 CGGGGAAAATATAAGGTGATACCAT 58.518 40.000 0.28 0.00 41.95 3.55
447 448 5.746656 GCGGGGAAAATATAAGGTGATACCA 60.747 44.000 0.28 0.00 41.95 3.25
448 449 4.698780 GCGGGGAAAATATAAGGTGATACC 59.301 45.833 0.00 0.00 38.99 2.73
449 450 4.390909 CGCGGGGAAAATATAAGGTGATAC 59.609 45.833 0.00 0.00 0.00 2.24
450 451 4.283978 TCGCGGGGAAAATATAAGGTGATA 59.716 41.667 6.13 0.00 0.00 2.15
451 452 3.071892 TCGCGGGGAAAATATAAGGTGAT 59.928 43.478 6.13 0.00 0.00 3.06
452 453 2.435069 TCGCGGGGAAAATATAAGGTGA 59.565 45.455 6.13 0.00 0.00 4.02
453 454 2.841215 TCGCGGGGAAAATATAAGGTG 58.159 47.619 6.13 0.00 0.00 4.00
454 455 3.181448 ACATCGCGGGGAAAATATAAGGT 60.181 43.478 6.13 0.00 0.00 3.50
455 456 3.188460 CACATCGCGGGGAAAATATAAGG 59.812 47.826 6.13 0.00 0.00 2.69
456 457 3.364964 GCACATCGCGGGGAAAATATAAG 60.365 47.826 6.13 0.00 0.00 1.73
457 458 2.550606 GCACATCGCGGGGAAAATATAA 59.449 45.455 6.13 0.00 0.00 0.98
458 459 2.147958 GCACATCGCGGGGAAAATATA 58.852 47.619 6.13 0.00 0.00 0.86
459 460 0.951558 GCACATCGCGGGGAAAATAT 59.048 50.000 6.13 0.00 0.00 1.28
460 461 1.098712 GGCACATCGCGGGGAAAATA 61.099 55.000 6.13 0.00 43.84 1.40
461 462 2.414785 GGCACATCGCGGGGAAAAT 61.415 57.895 6.13 0.00 43.84 1.82
462 463 3.059386 GGCACATCGCGGGGAAAA 61.059 61.111 6.13 0.00 43.84 2.29
463 464 3.969250 GAGGCACATCGCGGGGAAA 62.969 63.158 6.13 0.00 43.84 3.13
464 465 4.467084 GAGGCACATCGCGGGGAA 62.467 66.667 6.13 0.00 43.84 3.97
466 467 4.776322 TTGAGGCACATCGCGGGG 62.776 66.667 6.13 0.36 43.84 5.73
467 468 3.197790 CTTGAGGCACATCGCGGG 61.198 66.667 6.13 0.81 43.84 6.13
468 469 2.125552 TCTTGAGGCACATCGCGG 60.126 61.111 6.13 0.00 43.84 6.46
469 470 0.179137 TACTCTTGAGGCACATCGCG 60.179 55.000 0.00 0.00 43.84 5.87
470 471 1.661112 GTTACTCTTGAGGCACATCGC 59.339 52.381 2.55 0.00 41.28 4.58
471 472 2.959516 TGTTACTCTTGAGGCACATCG 58.040 47.619 2.55 0.00 0.00 3.84
472 473 5.886960 ATTTGTTACTCTTGAGGCACATC 57.113 39.130 2.55 0.00 0.00 3.06
473 474 5.769662 TGAATTTGTTACTCTTGAGGCACAT 59.230 36.000 2.55 0.00 0.00 3.21
474 475 5.008613 GTGAATTTGTTACTCTTGAGGCACA 59.991 40.000 2.55 1.98 0.00 4.57
475 476 5.452777 GTGAATTTGTTACTCTTGAGGCAC 58.547 41.667 2.55 0.00 0.00 5.01
476 477 4.518970 GGTGAATTTGTTACTCTTGAGGCA 59.481 41.667 2.55 0.00 0.00 4.75
477 478 4.518970 TGGTGAATTTGTTACTCTTGAGGC 59.481 41.667 2.55 0.00 0.00 4.70
478 479 6.824305 ATGGTGAATTTGTTACTCTTGAGG 57.176 37.500 2.55 0.00 0.00 3.86
479 480 9.003658 ACTTATGGTGAATTTGTTACTCTTGAG 57.996 33.333 0.00 0.00 0.00 3.02
503 504 2.101582 GTCCCATCGATAGCAAGACACT 59.898 50.000 0.00 0.00 0.00 3.55
505 506 1.412710 GGTCCCATCGATAGCAAGACA 59.587 52.381 0.00 0.00 0.00 3.41
533 536 7.367159 TGTGTGAATATTTTTACTACGTGGG 57.633 36.000 3.26 0.00 0.00 4.61
546 549 9.373603 CCAAATTTGATGACATGTGTGAATATT 57.626 29.630 19.86 0.00 0.00 1.28
583 590 5.157781 GCTACTAGAATAATGAGGCACGAG 58.842 45.833 0.00 0.00 0.00 4.18
586 593 7.064016 GCTTATGCTACTAGAATAATGAGGCAC 59.936 40.741 0.00 0.00 36.03 5.01
592 599 8.824159 ACAGTGCTTATGCTACTAGAATAATG 57.176 34.615 0.00 0.00 40.48 1.90
602 609 4.314740 AGCTCTACAGTGCTTATGCTAC 57.685 45.455 1.96 0.00 41.50 3.58
644 651 3.386237 GGGCTGACTCTCCGTGCT 61.386 66.667 0.00 0.00 0.00 4.40
645 652 3.386237 AGGGCTGACTCTCCGTGC 61.386 66.667 0.00 0.00 0.00 5.34
662 669 3.220999 CTGACGCCGGGAGACAACA 62.221 63.158 2.18 0.00 0.00 3.33
663 670 2.432628 CTGACGCCGGGAGACAAC 60.433 66.667 2.18 0.00 0.00 3.32
671 678 2.537560 GGATCATTGCTGACGCCGG 61.538 63.158 0.00 0.00 33.22 6.13
691 704 6.735968 GCCAGCTAATTATTGAAGGTTTAGGC 60.736 42.308 0.00 0.00 0.00 3.93
737 752 3.991773 GACCTGCACTAAAATGTACACGA 59.008 43.478 0.00 0.00 0.00 4.35
753 768 2.687935 CTCTCTGGTTCTAGAGACCTGC 59.312 54.545 18.78 0.00 46.12 4.85
756 771 2.028876 GCCTCTCTGGTTCTAGAGACC 58.971 57.143 10.96 13.94 46.12 3.85
770 785 1.141858 CTGTCCTAATTGGGGCCTCTC 59.858 57.143 10.27 0.00 36.20 3.20
839 865 4.794241 CGCTTTGGCTACGCGTGC 62.794 66.667 24.59 22.14 41.78 5.34
840 866 2.348140 GATCGCTTTGGCTACGCGTG 62.348 60.000 24.59 13.17 46.31 5.34
841 867 2.125673 ATCGCTTTGGCTACGCGT 60.126 55.556 19.17 19.17 46.31 6.01
843 869 2.534903 GGGATCGCTTTGGCTACGC 61.535 63.158 1.84 0.00 36.09 4.42
844 870 1.887707 GGGGATCGCTTTGGCTACG 60.888 63.158 9.90 0.00 36.09 3.51
845 871 0.815615 CAGGGGATCGCTTTGGCTAC 60.816 60.000 9.90 0.00 36.09 3.58
846 872 1.526887 CAGGGGATCGCTTTGGCTA 59.473 57.895 9.90 0.00 36.09 3.93
847 873 2.273449 CAGGGGATCGCTTTGGCT 59.727 61.111 9.90 0.00 36.09 4.75
848 874 2.608970 TAGCAGGGGATCGCTTTGGC 62.609 60.000 9.90 8.27 39.70 4.52
850 876 1.162800 GCTAGCAGGGGATCGCTTTG 61.163 60.000 10.63 9.60 39.70 2.77
851 877 1.147153 GCTAGCAGGGGATCGCTTT 59.853 57.895 10.63 0.00 39.70 3.51
852 878 1.764054 AGCTAGCAGGGGATCGCTT 60.764 57.895 18.83 0.00 39.70 4.68
854 880 2.030262 CAGCTAGCAGGGGATCGC 59.970 66.667 18.83 0.06 0.00 4.58
981 1013 1.375908 GAGCTGATGGTGTTGGCGA 60.376 57.895 0.00 0.00 0.00 5.54
1036 1068 1.669779 CTGTAGGTCGTCGAAGGGTAG 59.330 57.143 0.00 0.00 0.00 3.18
1037 1069 1.742761 CTGTAGGTCGTCGAAGGGTA 58.257 55.000 0.00 0.00 0.00 3.69
1051 1084 2.737688 CGTGCTGCTGCTGCTGTAG 61.738 63.158 27.67 17.74 39.81 2.74
1074 1107 2.488355 TCGTCGTCGATGGAAGCC 59.512 61.111 14.28 0.00 41.35 4.35
1119 1155 2.434884 CGACATGCCGGAAGCTGT 60.435 61.111 5.05 0.00 44.23 4.40
1122 1158 3.554692 CGTCGACATGCCGGAAGC 61.555 66.667 17.16 0.00 44.14 3.86
1124 1160 2.024868 CAACGTCGACATGCCGGAA 61.025 57.895 17.16 0.00 0.00 4.30
1125 1161 2.431771 CAACGTCGACATGCCGGA 60.432 61.111 17.16 0.00 0.00 5.14
1361 1416 1.192803 AGTCCGGGAAGTTGAGGTCC 61.193 60.000 0.00 0.00 0.00 4.46
1487 1542 0.323816 AGCAGTCGTCCTCCATGAGA 60.324 55.000 0.00 0.00 0.00 3.27
1574 1638 0.523968 CGAAAATGTCCATGCCGCTG 60.524 55.000 0.00 0.00 0.00 5.18
1576 1640 1.226660 CCGAAAATGTCCATGCCGC 60.227 57.895 0.00 0.00 0.00 6.53
1628 1695 4.148825 ATGACCGAGCGCCAGTCC 62.149 66.667 16.59 0.40 0.00 3.85
1823 1890 8.195436 TGATGTATAGACCCGTAAAAAGAAGAG 58.805 37.037 0.00 0.00 0.00 2.85
1875 1948 2.638480 AGGTTAACTGCAGCAGTGAA 57.362 45.000 28.91 24.38 44.62 3.18
1904 1978 3.192466 GCAATGCACCCTGATGAAATTC 58.808 45.455 0.00 0.00 0.00 2.17
1915 1989 3.874392 AATACTCTTTGCAATGCACCC 57.126 42.857 7.72 0.00 38.71 4.61
1939 2013 4.751098 CAGTGTTAAAACAGGCAATGCAAT 59.249 37.500 7.79 0.00 40.05 3.56
1949 2023 4.084537 CGGCTGTAGACAGTGTTAAAACAG 60.085 45.833 17.21 17.21 45.45 3.16
1950 2024 3.805422 CGGCTGTAGACAGTGTTAAAACA 59.195 43.478 11.19 0.00 45.45 2.83
1978 2052 2.819608 CAAGATACAAATATGGCGGGGG 59.180 50.000 0.00 0.00 0.00 5.40
1979 2053 2.228822 GCAAGATACAAATATGGCGGGG 59.771 50.000 0.00 0.00 0.00 5.73
1980 2054 2.884012 TGCAAGATACAAATATGGCGGG 59.116 45.455 0.00 0.00 0.00 6.13
1981 2055 4.539870 CTTGCAAGATACAAATATGGCGG 58.460 43.478 22.31 0.00 0.00 6.13
1983 2057 3.976942 CGCTTGCAAGATACAAATATGGC 59.023 43.478 30.39 9.42 0.00 4.40
1985 2059 5.422666 TCCGCTTGCAAGATACAAATATG 57.577 39.130 30.39 0.00 0.00 1.78
1986 2060 7.744087 TTATCCGCTTGCAAGATACAAATAT 57.256 32.000 30.39 12.27 0.00 1.28
2003 2080 2.854185 GCTTCACTTTTGCATTATCCGC 59.146 45.455 0.00 0.00 0.00 5.54
2008 2085 8.336806 CAATTTTTCAGCTTCACTTTTGCATTA 58.663 29.630 0.00 0.00 0.00 1.90
2023 2100 3.253230 AGCGGCAATACAATTTTTCAGC 58.747 40.909 1.45 0.00 0.00 4.26
2025 2102 7.148641 TCTTTAAGCGGCAATACAATTTTTCA 58.851 30.769 1.45 0.00 0.00 2.69
2031 2108 9.646427 TTTATTTTCTTTAAGCGGCAATACAAT 57.354 25.926 1.45 0.00 0.00 2.71
2038 2115 8.649973 TTTTCTTTTATTTTCTTTAAGCGGCA 57.350 26.923 1.45 0.00 0.00 5.69
2084 2161 2.696526 TAGACAAGGGACTGTGACCT 57.303 50.000 0.00 0.00 40.86 3.85
2086 2163 3.321111 TGACTTAGACAAGGGACTGTGAC 59.679 47.826 0.00 0.00 40.86 3.67
2088 2165 4.058817 GTTGACTTAGACAAGGGACTGTG 58.941 47.826 0.00 0.00 40.86 3.66
2089 2166 3.709653 TGTTGACTTAGACAAGGGACTGT 59.290 43.478 0.00 0.00 40.86 3.55
2090 2167 4.336889 TGTTGACTTAGACAAGGGACTG 57.663 45.455 0.00 0.00 40.86 3.51
2142 2454 3.118956 CGGTTGCCTTCTTCTCTAGACAT 60.119 47.826 0.00 0.00 30.90 3.06
2187 2514 7.389053 GGGTCCATCTATTTTGATGTCTATGTC 59.611 40.741 0.00 0.00 41.47 3.06
2214 2541 3.989817 GCTGTTTGAAAAGCTTGGTATGG 59.010 43.478 0.00 0.00 36.47 2.74
2216 2543 4.099266 TGTGCTGTTTGAAAAGCTTGGTAT 59.901 37.500 0.00 0.00 40.21 2.73
2255 2584 8.396272 TCTTGACATGAGATCTCACGAATATA 57.604 34.615 27.37 9.00 43.11 0.86
2258 2587 5.588958 TCTTGACATGAGATCTCACGAAT 57.411 39.130 27.37 12.91 43.11 3.34
2261 2590 5.825507 TGTATCTTGACATGAGATCTCACG 58.174 41.667 27.37 22.09 43.11 4.35
2305 2634 9.729023 CATACTCAAGTGACAAAACATACAAAA 57.271 29.630 0.00 0.00 0.00 2.44
2306 2635 9.114952 TCATACTCAAGTGACAAAACATACAAA 57.885 29.630 0.00 0.00 0.00 2.83
2307 2636 8.556194 GTCATACTCAAGTGACAAAACATACAA 58.444 33.333 0.98 0.00 43.20 2.41
2308 2637 7.931407 AGTCATACTCAAGTGACAAAACATACA 59.069 33.333 8.06 0.00 45.47 2.29
2309 2638 8.311650 AGTCATACTCAAGTGACAAAACATAC 57.688 34.615 8.06 0.00 45.47 2.39
2310 2639 8.902540 AAGTCATACTCAAGTGACAAAACATA 57.097 30.769 8.06 0.00 45.47 2.29
2311 2640 7.807977 AAGTCATACTCAAGTGACAAAACAT 57.192 32.000 8.06 0.00 45.47 2.71
2312 2641 8.725405 TTAAGTCATACTCAAGTGACAAAACA 57.275 30.769 8.06 0.00 45.47 2.83
2344 2673 4.297510 CGGCTAGATCTCAATCAACTGAG 58.702 47.826 0.00 0.00 43.62 3.35
2345 2674 3.491619 GCGGCTAGATCTCAATCAACTGA 60.492 47.826 0.00 0.00 34.07 3.41
2346 2675 2.799412 GCGGCTAGATCTCAATCAACTG 59.201 50.000 0.00 0.00 34.07 3.16
2347 2676 2.544694 CGCGGCTAGATCTCAATCAACT 60.545 50.000 0.00 0.00 34.07 3.16
2348 2677 1.789464 CGCGGCTAGATCTCAATCAAC 59.211 52.381 0.00 0.00 34.07 3.18
2349 2678 1.869754 GCGCGGCTAGATCTCAATCAA 60.870 52.381 8.83 0.00 34.07 2.57
2350 2679 0.319040 GCGCGGCTAGATCTCAATCA 60.319 55.000 8.83 0.00 34.07 2.57
2351 2680 0.038709 AGCGCGGCTAGATCTCAATC 60.039 55.000 8.83 0.00 36.99 2.67
2352 2681 0.038709 GAGCGCGGCTAGATCTCAAT 60.039 55.000 8.83 0.00 39.88 2.57
2353 2682 1.103987 AGAGCGCGGCTAGATCTCAA 61.104 55.000 8.83 0.00 39.88 3.02
2354 2683 1.103987 AAGAGCGCGGCTAGATCTCA 61.104 55.000 8.83 0.00 39.88 3.27
2355 2684 0.875728 TAAGAGCGCGGCTAGATCTC 59.124 55.000 8.83 3.62 39.88 2.75
2356 2685 0.594110 GTAAGAGCGCGGCTAGATCT 59.406 55.000 8.83 0.00 39.88 2.75
2357 2686 0.594110 AGTAAGAGCGCGGCTAGATC 59.406 55.000 8.83 0.00 39.88 2.75
2358 2687 1.033574 AAGTAAGAGCGCGGCTAGAT 58.966 50.000 8.83 0.00 39.88 1.98
2359 2688 1.671979 TAAGTAAGAGCGCGGCTAGA 58.328 50.000 8.83 0.00 39.88 2.43
2360 2689 2.486951 TTAAGTAAGAGCGCGGCTAG 57.513 50.000 8.83 0.00 39.88 3.42
2361 2690 3.447918 AATTAAGTAAGAGCGCGGCTA 57.552 42.857 8.83 0.00 39.88 3.93
2362 2691 2.311124 AATTAAGTAAGAGCGCGGCT 57.689 45.000 8.83 5.31 43.88 5.52
2363 2692 2.861935 TGTAATTAAGTAAGAGCGCGGC 59.138 45.455 8.83 0.00 0.00 6.53
2364 2693 3.489785 CCTGTAATTAAGTAAGAGCGCGG 59.510 47.826 8.83 0.00 0.00 6.46
2365 2694 3.489785 CCCTGTAATTAAGTAAGAGCGCG 59.510 47.826 0.00 0.00 0.00 6.86
2366 2695 3.247886 GCCCTGTAATTAAGTAAGAGCGC 59.752 47.826 0.00 0.00 0.00 5.92
2367 2696 4.439057 TGCCCTGTAATTAAGTAAGAGCG 58.561 43.478 0.00 0.00 0.00 5.03
2368 2697 5.646360 TGTTGCCCTGTAATTAAGTAAGAGC 59.354 40.000 0.00 0.00 0.00 4.09
2369 2698 7.681939 TTGTTGCCCTGTAATTAAGTAAGAG 57.318 36.000 0.00 0.00 0.00 2.85
2370 2699 7.362574 GCATTGTTGCCCTGTAATTAAGTAAGA 60.363 37.037 0.00 0.00 43.38 2.10
2371 2700 6.751888 GCATTGTTGCCCTGTAATTAAGTAAG 59.248 38.462 0.00 0.00 43.38 2.34
2372 2701 6.626302 GCATTGTTGCCCTGTAATTAAGTAA 58.374 36.000 0.00 0.00 43.38 2.24
2373 2702 6.202516 GCATTGTTGCCCTGTAATTAAGTA 57.797 37.500 0.00 0.00 43.38 2.24
2374 2703 5.072040 GCATTGTTGCCCTGTAATTAAGT 57.928 39.130 0.00 0.00 43.38 2.24
2396 2725 4.040461 TGTTTCTTCCCTCCTTGTGTAGAG 59.960 45.833 0.00 0.00 0.00 2.43
2425 2783 1.692411 GTGCTGTTTCTTCCACCCTT 58.308 50.000 0.00 0.00 0.00 3.95
2429 2787 1.515521 CGGGGTGCTGTTTCTTCCAC 61.516 60.000 0.00 0.00 0.00 4.02
2439 2797 0.752009 TAGCTAGTCTCGGGGTGCTG 60.752 60.000 0.00 0.00 32.72 4.41
2447 2805 0.885196 GCCCCATCTAGCTAGTCTCG 59.115 60.000 20.10 7.42 0.00 4.04
2451 2809 2.478872 TTCTGCCCCATCTAGCTAGT 57.521 50.000 20.10 5.41 0.00 2.57
2462 2820 0.885196 TGCAACGTTTATTCTGCCCC 59.115 50.000 0.00 0.00 33.78 5.80
2463 2821 2.715737 TTGCAACGTTTATTCTGCCC 57.284 45.000 0.00 0.00 33.78 5.36
2479 2837 2.437359 ACCTGGCTGCGAGATTGC 60.437 61.111 13.55 0.00 0.00 3.56
2552 2912 3.120854 CCTTGACTTTTCTTCTCGCGAAG 60.121 47.826 11.33 8.88 46.41 3.79
2553 2913 2.800544 CCTTGACTTTTCTTCTCGCGAA 59.199 45.455 11.33 0.00 0.00 4.70
2560 2920 5.836347 ACAAAGCATCCTTGACTTTTCTTC 58.164 37.500 0.00 0.00 31.33 2.87
2598 2958 7.903946 GCATATATTTTCATCAATCAGAGCGAG 59.096 37.037 0.00 0.00 0.00 5.03
2616 2976 5.315914 ACCCTTGAATACCCCTGCATATATT 59.684 40.000 0.00 0.00 0.00 1.28
2626 2986 1.477014 GCAGCTACCCTTGAATACCCC 60.477 57.143 0.00 0.00 0.00 4.95
2629 2989 3.808728 TCATGCAGCTACCCTTGAATAC 58.191 45.455 0.00 0.00 0.00 1.89
2653 3013 1.536766 ACATGGAATTGAGTGTGTGCG 59.463 47.619 0.00 0.00 0.00 5.34
2705 3065 0.678395 CGTGCATCTGATCTAGCCCT 59.322 55.000 0.00 0.00 0.00 5.19
2708 3068 0.249615 TGGCGTGCATCTGATCTAGC 60.250 55.000 0.00 0.00 0.00 3.42
2709 3069 1.202452 TGTGGCGTGCATCTGATCTAG 60.202 52.381 0.00 0.00 0.00 2.43
2757 3121 1.140161 CATCGCAAGTTGCCCATGG 59.860 57.895 21.84 4.14 41.12 3.66
2784 3148 2.166584 CTTGAAAACGACGCCCCGAC 62.167 60.000 0.00 0.00 0.00 4.79
2785 3149 1.957186 CTTGAAAACGACGCCCCGA 60.957 57.895 0.00 0.00 0.00 5.14
2829 3196 2.934277 GCACACAGCGCATTGTATG 58.066 52.632 11.47 6.97 0.00 2.39
2839 3206 1.480205 GTGTCACAATTGCACACAGC 58.520 50.000 25.71 8.26 40.22 4.40
2885 3256 2.346766 TGAACTGTTGCCAGACACAT 57.653 45.000 0.00 0.00 41.50 3.21
2938 3315 0.787183 GAGAGACAACGCAACAGCTC 59.213 55.000 0.00 0.00 0.00 4.09
2957 3334 2.089980 CTGCATCCAAGGAAGGACAAG 58.910 52.381 0.00 0.00 41.30 3.16
2968 3345 4.271661 TGTTTGATAGATGCTGCATCCAA 58.728 39.130 32.65 26.32 41.36 3.53
3007 3384 9.408648 AGAGAGTAAAATTTCTCAAAACTCCAA 57.591 29.630 8.99 0.00 41.78 3.53
3008 3385 8.980481 AGAGAGTAAAATTTCTCAAAACTCCA 57.020 30.769 8.99 0.00 41.78 3.86
3016 3393 9.224267 CCATCTCAAAGAGAGTAAAATTTCTCA 57.776 33.333 8.99 0.00 42.26 3.27
3017 3394 8.180920 GCCATCTCAAAGAGAGTAAAATTTCTC 58.819 37.037 2.94 0.00 42.26 2.87
3018 3395 7.887495 AGCCATCTCAAAGAGAGTAAAATTTCT 59.113 33.333 2.94 0.00 42.26 2.52
3019 3396 8.049655 AGCCATCTCAAAGAGAGTAAAATTTC 57.950 34.615 2.94 0.00 42.26 2.17
3020 3397 8.302438 CAAGCCATCTCAAAGAGAGTAAAATTT 58.698 33.333 2.94 0.00 42.26 1.82
3021 3398 7.667219 TCAAGCCATCTCAAAGAGAGTAAAATT 59.333 33.333 2.94 0.00 42.26 1.82
3022 3399 7.170965 TCAAGCCATCTCAAAGAGAGTAAAAT 58.829 34.615 2.94 0.00 42.26 1.82
3023 3400 6.533730 TCAAGCCATCTCAAAGAGAGTAAAA 58.466 36.000 2.94 0.00 42.26 1.52
3024 3401 6.114187 TCAAGCCATCTCAAAGAGAGTAAA 57.886 37.500 2.94 0.00 42.26 2.01
3025 3402 5.745312 TCAAGCCATCTCAAAGAGAGTAA 57.255 39.130 2.94 0.00 42.26 2.24
3026 3403 5.946942 ATCAAGCCATCTCAAAGAGAGTA 57.053 39.130 2.94 0.00 42.26 2.59
3027 3404 4.840716 ATCAAGCCATCTCAAAGAGAGT 57.159 40.909 2.94 0.00 42.26 3.24
3028 3405 4.201930 GCAATCAAGCCATCTCAAAGAGAG 60.202 45.833 2.94 0.00 42.26 3.20
3029 3406 3.693085 GCAATCAAGCCATCTCAAAGAGA 59.307 43.478 0.00 0.00 43.20 3.10
3030 3407 4.030134 GCAATCAAGCCATCTCAAAGAG 57.970 45.455 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.