Multiple sequence alignment - TraesCS6A01G339900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G339900 chr6A 100.000 6727 0 0 1 6727 573202511 573195785 0.000000e+00 12423.0
1 TraesCS6A01G339900 chr6D 95.901 5538 174 21 1211 6727 428481565 428476060 0.000000e+00 8920.0
2 TraesCS6A01G339900 chr6D 90.834 851 41 16 352 1185 428482517 428481687 0.000000e+00 1105.0
3 TraesCS6A01G339900 chr6D 94.615 130 7 0 5944 6073 354595694 354595823 1.140000e-47 202.0
4 TraesCS6A01G339900 chr6B 96.148 1869 59 6 2886 4750 644482002 644480143 0.000000e+00 3040.0
5 TraesCS6A01G339900 chr6B 89.084 1539 99 27 398 1884 644484740 644483219 0.000000e+00 1847.0
6 TraesCS6A01G339900 chr6B 95.648 1011 38 5 1892 2898 644483176 644482168 0.000000e+00 1618.0
7 TraesCS6A01G339900 chr6B 91.773 863 56 9 5086 5942 644479654 644478801 0.000000e+00 1186.0
8 TraesCS6A01G339900 chr6B 93.415 653 34 5 6078 6727 644478698 644478052 0.000000e+00 959.0
9 TraesCS6A01G339900 chr6B 90.741 162 14 1 4914 5074 644480019 644479858 1.470000e-51 215.0
10 TraesCS6A01G339900 chr6B 95.238 105 5 0 5944 6048 691143122 691143226 4.170000e-37 167.0
11 TraesCS6A01G339900 chr6B 94.286 105 6 0 5944 6048 64186941 64187045 1.940000e-35 161.0
12 TraesCS6A01G339900 chr6B 92.381 105 8 0 5944 6048 373780462 373780358 4.200000e-32 150.0
13 TraesCS6A01G339900 chr6B 81.884 138 15 9 770 899 644807076 644806941 2.570000e-19 108.0
14 TraesCS6A01G339900 chr7D 92.903 310 18 2 1 309 412610183 412610489 1.330000e-121 448.0
15 TraesCS6A01G339900 chr4B 92.581 310 19 3 1 308 667266415 667266722 6.190000e-120 442.0
16 TraesCS6A01G339900 chr4B 91.987 312 20 4 1 309 634762102 634761793 3.730000e-117 433.0
17 TraesCS6A01G339900 chr4B 93.478 138 8 1 5944 6080 510830266 510830403 3.180000e-48 204.0
18 TraesCS6A01G339900 chr2B 91.640 311 20 5 1 309 729622666 729622360 6.240000e-115 425.0
19 TraesCS6A01G339900 chr2B 87.333 150 8 2 5944 6082 500456540 500456391 1.940000e-35 161.0
20 TraesCS6A01G339900 chr2A 90.968 310 24 4 1 309 41031822 41032128 1.350000e-111 414.0
21 TraesCS6A01G339900 chr2A 89.286 140 13 1 5944 6081 754448141 754448002 2.490000e-39 174.0
22 TraesCS6A01G339900 chr7A 90.675 311 24 4 1 309 729390399 729390092 6.280000e-110 409.0
23 TraesCS6A01G339900 chr1A 90.645 310 20 7 1 309 111138945 111138644 2.920000e-108 403.0
24 TraesCS6A01G339900 chr1A 88.028 142 7 1 5942 6073 563800512 563800371 6.980000e-35 159.0
25 TraesCS6A01G339900 chr1A 87.413 143 8 1 5944 6076 268911173 268911315 9.030000e-34 156.0
26 TraesCS6A01G339900 chr5D 90.032 311 27 3 1 309 157994431 157994739 3.780000e-107 399.0
27 TraesCS6A01G339900 chr1D 89.355 310 26 5 2 309 3848582 3848886 3.810000e-102 383.0
28 TraesCS6A01G339900 chr1D 88.811 143 6 1 5944 6076 212494666 212494808 4.170000e-37 167.0
29 TraesCS6A01G339900 chr1D 97.561 41 1 0 5944 5984 489244303 489244263 3.370000e-08 71.3
30 TraesCS6A01G339900 chr4A 93.333 135 9 0 5939 6073 668307498 668307632 4.110000e-47 200.0
31 TraesCS6A01G339900 chr7B 93.233 133 9 0 5944 6076 606421783 606421915 5.320000e-46 196.0
32 TraesCS6A01G339900 chr7B 94.286 105 6 0 5944 6048 142770505 142770609 1.940000e-35 161.0
33 TraesCS6A01G339900 chr5B 90.299 134 11 2 5944 6076 695656182 695656050 2.490000e-39 174.0
34 TraesCS6A01G339900 chr3B 88.514 148 7 1 5936 6073 34644282 34644429 3.230000e-38 171.0
35 TraesCS6A01G339900 chr3B 85.321 109 4 3 5982 6078 416960852 416960744 1.190000e-17 102.0
36 TraesCS6A01G339900 chr5A 87.013 154 9 2 5944 6087 600611330 600611482 5.400000e-36 163.0
37 TraesCS6A01G339900 chr3A 86.577 149 10 1 5935 6073 26414612 26414464 9.030000e-34 156.0
38 TraesCS6A01G339900 chr2D 86.301 146 10 1 5944 6079 507430260 507430115 4.200000e-32 150.0
39 TraesCS6A01G339900 chr1B 85.616 146 10 2 5944 6079 302793444 302793300 7.030000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G339900 chr6A 573195785 573202511 6726 True 12423.0 12423 100.0000 1 6727 1 chr6A.!!$R1 6726
1 TraesCS6A01G339900 chr6D 428476060 428482517 6457 True 5012.5 8920 93.3675 352 6727 2 chr6D.!!$R1 6375
2 TraesCS6A01G339900 chr6B 644478052 644484740 6688 True 1477.5 3040 92.8015 398 6727 6 chr6B.!!$R3 6329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.031178 GTGCAACAGGCCTCTTGTTG 59.969 55.000 24.82 24.82 43.89 3.33 F
260 261 0.040246 GCTCACGATCCTACGGCTAC 60.040 60.000 0.00 0.00 37.61 3.58 F
300 301 0.814010 AAATATCACCCGGCAGACGC 60.814 55.000 0.00 0.00 42.52 5.19 F
1062 1100 0.657840 GGCATGGAACGAAATCTCCG 59.342 55.000 0.00 0.00 34.14 4.63 F
2382 2559 0.108329 GCAGACCTAGCTACCGCAAA 60.108 55.000 0.00 0.00 39.10 3.68 F
2694 2871 0.992695 ACTAGGGCCTCTGTTTTCCC 59.007 55.000 10.74 0.00 39.05 3.97 F
3479 3835 1.400494 ACTGCATTTTTCGATACGGGC 59.600 47.619 0.00 0.00 0.00 6.13 F
3482 3838 1.404035 GCATTTTTCGATACGGGCCTT 59.596 47.619 0.84 0.00 0.00 4.35 F
4881 5262 1.405105 GTGCAGCAAGTCTTGGTTTCA 59.595 47.619 14.56 12.30 39.79 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1029 1067 1.031571 CATGCCTTAAGCCTGCCGAA 61.032 55.000 0.00 0.0 42.71 4.30 R
1062 1100 1.140804 GACGCTCTCCAGCTCCTTC 59.859 63.158 0.00 0.0 44.40 3.46 R
1110 1148 1.593787 CTCAAGCTGCCTTCCTCGA 59.406 57.895 0.00 0.0 0.00 4.04 R
2810 2987 0.824109 CCATACGTTCTGGCCTCTGA 59.176 55.000 3.32 0.0 0.00 3.27 R
4280 4640 0.679321 TTGCTGCACAGTGAACACCA 60.679 50.000 4.15 0.0 0.00 4.17 R
4610 4970 0.540923 ACTGCCTCTTCCTCATCTGC 59.459 55.000 0.00 0.0 0.00 4.26 R
4751 5111 0.245266 TCACAGAAACGCGGCATCTA 59.755 50.000 12.47 0.0 0.00 1.98 R
5060 5450 1.185618 ACAGAGCGGGCAGACTTACA 61.186 55.000 0.00 0.0 0.00 2.41 R
6638 7328 2.188817 GTCCACAGATTCTACCCACCT 58.811 52.381 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.426917 ATTGGTGCGAGGGGGATT 58.573 55.556 0.00 0.00 0.00 3.01
18 19 1.697297 ATTGGTGCGAGGGGGATTT 59.303 52.632 0.00 0.00 0.00 2.17
19 20 0.041090 ATTGGTGCGAGGGGGATTTT 59.959 50.000 0.00 0.00 0.00 1.82
20 21 0.178947 TTGGTGCGAGGGGGATTTTT 60.179 50.000 0.00 0.00 0.00 1.94
43 44 4.162592 TGTGCAACAGGCCTCTTG 57.837 55.556 15.87 15.87 45.67 3.02
44 45 1.227102 TGTGCAACAGGCCTCTTGT 59.773 52.632 20.33 6.46 45.67 3.16
45 46 0.395586 TGTGCAACAGGCCTCTTGTT 60.396 50.000 20.33 12.30 45.67 2.83
46 47 0.031178 GTGCAACAGGCCTCTTGTTG 59.969 55.000 24.82 24.82 43.89 3.33
52 53 3.369921 GGCCTCTTGTTGCCAAGG 58.630 61.111 0.00 0.00 46.65 3.61
53 54 2.278330 GGCCTCTTGTTGCCAAGGG 61.278 63.158 0.00 0.00 46.88 3.95
60 61 2.954611 GTTGCCAAGGGAACGAGC 59.045 61.111 7.74 0.00 36.77 5.03
61 62 2.668212 TTGCCAAGGGAACGAGCG 60.668 61.111 0.00 0.00 0.00 5.03
64 65 3.423154 CCAAGGGAACGAGCGCAC 61.423 66.667 11.47 0.96 0.00 5.34
65 66 2.664851 CAAGGGAACGAGCGCACA 60.665 61.111 11.47 0.00 0.00 4.57
66 67 2.110213 AAGGGAACGAGCGCACAA 59.890 55.556 11.47 0.00 0.00 3.33
67 68 1.302511 AAGGGAACGAGCGCACAAT 60.303 52.632 11.47 0.00 0.00 2.71
68 69 1.577328 AAGGGAACGAGCGCACAATG 61.577 55.000 11.47 0.00 0.00 2.82
69 70 2.202349 GGAACGAGCGCACAATGC 60.202 61.111 11.47 0.00 40.69 3.56
71 72 1.358725 GGAACGAGCGCACAATGCTA 61.359 55.000 11.47 0.00 44.18 3.49
72 73 0.247301 GAACGAGCGCACAATGCTAC 60.247 55.000 11.47 0.00 44.18 3.58
73 74 1.955529 AACGAGCGCACAATGCTACG 61.956 55.000 11.47 3.47 44.18 3.51
74 75 2.444624 CGAGCGCACAATGCTACGT 61.445 57.895 11.47 0.00 44.18 3.57
75 76 1.787847 GAGCGCACAATGCTACGTT 59.212 52.632 11.47 0.00 44.18 3.99
76 77 0.165944 GAGCGCACAATGCTACGTTT 59.834 50.000 11.47 0.00 44.18 3.60
77 78 0.110238 AGCGCACAATGCTACGTTTG 60.110 50.000 11.47 0.00 42.25 2.93
78 79 0.385473 GCGCACAATGCTACGTTTGT 60.385 50.000 0.30 0.00 42.25 2.83
79 80 1.924191 GCGCACAATGCTACGTTTGTT 60.924 47.619 0.30 0.00 42.25 2.83
80 81 1.708158 CGCACAATGCTACGTTTGTTG 59.292 47.619 0.00 0.00 42.25 3.33
81 82 1.451651 GCACAATGCTACGTTTGTTGC 59.548 47.619 0.00 1.66 45.41 4.17
86 87 2.778372 GCTACGTTTGTTGCAACGG 58.222 52.632 23.79 15.02 44.71 4.44
87 88 0.659123 GCTACGTTTGTTGCAACGGG 60.659 55.000 23.79 14.69 44.71 5.28
88 89 0.040781 CTACGTTTGTTGCAACGGGG 60.041 55.000 23.79 15.01 45.72 5.73
89 90 2.061182 TACGTTTGTTGCAACGGGGC 62.061 55.000 23.79 12.88 45.72 5.80
90 91 2.496817 GTTTGTTGCAACGGGGCA 59.503 55.556 23.79 3.74 43.19 5.36
96 97 4.577677 TGCAACGGGGCAAGAGCA 62.578 61.111 0.41 0.00 44.61 4.26
97 98 3.294493 GCAACGGGGCAAGAGCAA 61.294 61.111 0.00 0.00 44.61 3.91
98 99 2.855514 GCAACGGGGCAAGAGCAAA 61.856 57.895 0.00 0.00 44.61 3.68
99 100 1.286880 CAACGGGGCAAGAGCAAAG 59.713 57.895 0.00 0.00 44.61 2.77
100 101 1.903404 AACGGGGCAAGAGCAAAGG 60.903 57.895 0.00 0.00 44.61 3.11
101 102 2.282462 CGGGGCAAGAGCAAAGGT 60.282 61.111 0.00 0.00 44.61 3.50
102 103 1.903404 CGGGGCAAGAGCAAAGGTT 60.903 57.895 0.00 0.00 44.61 3.50
103 104 1.463553 CGGGGCAAGAGCAAAGGTTT 61.464 55.000 0.00 0.00 44.61 3.27
104 105 0.758734 GGGGCAAGAGCAAAGGTTTT 59.241 50.000 0.00 0.00 44.61 2.43
105 106 1.140852 GGGGCAAGAGCAAAGGTTTTT 59.859 47.619 0.00 0.00 44.61 1.94
144 145 2.435372 TGTTTCTGAAACACAGGCCT 57.565 45.000 27.14 0.00 45.79 5.19
145 146 2.733956 TGTTTCTGAAACACAGGCCTT 58.266 42.857 27.14 0.00 45.79 4.35
146 147 3.096092 TGTTTCTGAAACACAGGCCTTT 58.904 40.909 27.14 0.00 45.79 3.11
147 148 3.513515 TGTTTCTGAAACACAGGCCTTTT 59.486 39.130 27.14 0.11 45.79 2.27
148 149 4.020662 TGTTTCTGAAACACAGGCCTTTTT 60.021 37.500 27.14 2.41 45.79 1.94
149 150 4.385358 TTCTGAAACACAGGCCTTTTTC 57.615 40.909 18.53 18.53 45.76 2.29
150 151 3.360867 TCTGAAACACAGGCCTTTTTCA 58.639 40.909 23.41 23.41 45.76 2.69
151 152 3.709987 CTGAAACACAGGCCTTTTTCAG 58.290 45.455 29.63 29.63 45.01 3.02
152 153 3.360867 TGAAACACAGGCCTTTTTCAGA 58.639 40.909 22.03 7.95 33.96 3.27
153 154 3.766591 TGAAACACAGGCCTTTTTCAGAA 59.233 39.130 22.03 7.42 33.96 3.02
154 155 4.142182 TGAAACACAGGCCTTTTTCAGAAG 60.142 41.667 22.03 4.92 33.96 2.85
155 156 3.297134 ACACAGGCCTTTTTCAGAAGA 57.703 42.857 0.00 0.00 0.00 2.87
156 157 3.631250 ACACAGGCCTTTTTCAGAAGAA 58.369 40.909 0.00 0.00 0.00 2.52
157 158 4.023291 ACACAGGCCTTTTTCAGAAGAAA 58.977 39.130 0.00 0.00 41.78 2.52
177 178 1.555477 AAAAACGTTTGGCAGAAGCG 58.445 45.000 15.46 3.01 43.41 4.68
178 179 0.869880 AAAACGTTTGGCAGAAGCGC 60.870 50.000 15.46 0.00 43.41 5.92
179 180 1.999071 AAACGTTTGGCAGAAGCGCA 61.999 50.000 13.81 0.00 43.41 6.09
180 181 1.999071 AACGTTTGGCAGAAGCGCAA 61.999 50.000 11.47 0.00 43.41 4.85
181 182 2.010817 CGTTTGGCAGAAGCGCAAC 61.011 57.895 11.47 2.34 43.41 4.17
182 183 1.065600 GTTTGGCAGAAGCGCAACA 59.934 52.632 11.47 0.00 43.41 3.33
183 184 1.065600 TTTGGCAGAAGCGCAACAC 59.934 52.632 11.47 0.00 43.41 3.32
184 185 1.661498 TTTGGCAGAAGCGCAACACA 61.661 50.000 11.47 0.00 43.41 3.72
185 186 1.661498 TTGGCAGAAGCGCAACACAA 61.661 50.000 11.47 4.06 43.41 3.33
186 187 1.370900 GGCAGAAGCGCAACACAAG 60.371 57.895 11.47 0.00 43.41 3.16
187 188 2.012948 GCAGAAGCGCAACACAAGC 61.013 57.895 11.47 0.00 0.00 4.01
188 189 1.650912 CAGAAGCGCAACACAAGCT 59.349 52.632 11.47 0.00 43.90 3.74
194 195 2.664916 AGCGCAACACAAGCTTTATTG 58.335 42.857 11.47 2.88 38.13 1.90
195 196 1.124839 GCGCAACACAAGCTTTATTGC 59.875 47.619 21.24 21.24 41.74 3.56
196 197 2.392821 CGCAACACAAGCTTTATTGCA 58.607 42.857 26.52 0.00 44.65 4.08
197 198 2.793790 CGCAACACAAGCTTTATTGCAA 59.206 40.909 26.52 0.00 44.65 4.08
198 199 3.244814 CGCAACACAAGCTTTATTGCAAA 59.755 39.130 26.52 0.00 44.65 3.68
199 200 4.606673 CGCAACACAAGCTTTATTGCAAAG 60.607 41.667 26.52 14.36 44.65 2.77
200 201 4.318974 GCAACACAAGCTTTATTGCAAAGG 60.319 41.667 24.18 3.55 44.01 3.11
201 202 4.670896 ACACAAGCTTTATTGCAAAGGT 57.329 36.364 1.71 0.00 39.38 3.50
202 203 5.022282 ACACAAGCTTTATTGCAAAGGTT 57.978 34.783 1.71 5.68 45.46 3.50
207 208 4.248058 AGCTTTATTGCAAAGGTTGATGC 58.752 39.130 1.71 0.00 42.86 3.91
211 212 1.007502 TGCAAAGGTTGATGCACGC 60.008 52.632 0.00 0.00 46.87 5.34
212 213 1.286880 GCAAAGGTTGATGCACGCT 59.713 52.632 0.00 0.00 42.12 5.07
213 214 0.730494 GCAAAGGTTGATGCACGCTC 60.730 55.000 0.00 0.00 42.12 5.03
214 215 0.592637 CAAAGGTTGATGCACGCTCA 59.407 50.000 0.00 0.00 0.00 4.26
215 216 1.001487 CAAAGGTTGATGCACGCTCAA 60.001 47.619 0.00 0.00 0.00 3.02
216 217 1.538047 AAGGTTGATGCACGCTCAAT 58.462 45.000 4.62 0.00 35.26 2.57
217 218 2.401583 AGGTTGATGCACGCTCAATA 57.598 45.000 4.62 0.00 35.26 1.90
218 219 2.710377 AGGTTGATGCACGCTCAATAA 58.290 42.857 4.62 0.00 35.26 1.40
219 220 3.081061 AGGTTGATGCACGCTCAATAAA 58.919 40.909 4.62 0.00 35.26 1.40
220 221 3.505680 AGGTTGATGCACGCTCAATAAAA 59.494 39.130 4.62 0.00 35.26 1.52
221 222 4.022416 AGGTTGATGCACGCTCAATAAAAA 60.022 37.500 4.62 0.00 35.26 1.94
241 242 4.861102 AAAAGATCAGAAGGTTGGCTTG 57.139 40.909 0.00 0.00 0.00 4.01
242 243 1.831580 AGATCAGAAGGTTGGCTTGC 58.168 50.000 0.00 0.00 0.00 4.01
243 244 1.353694 AGATCAGAAGGTTGGCTTGCT 59.646 47.619 0.00 0.00 0.00 3.91
244 245 1.742268 GATCAGAAGGTTGGCTTGCTC 59.258 52.381 0.00 0.00 0.00 4.26
245 246 0.473755 TCAGAAGGTTGGCTTGCTCA 59.526 50.000 0.00 0.00 0.00 4.26
246 247 0.595095 CAGAAGGTTGGCTTGCTCAC 59.405 55.000 0.00 0.00 0.00 3.51
247 248 0.886490 AGAAGGTTGGCTTGCTCACG 60.886 55.000 0.00 0.00 0.00 4.35
248 249 0.884704 GAAGGTTGGCTTGCTCACGA 60.885 55.000 0.00 0.00 0.00 4.35
249 250 0.250901 AAGGTTGGCTTGCTCACGAT 60.251 50.000 0.00 0.00 0.00 3.73
250 251 0.674895 AGGTTGGCTTGCTCACGATC 60.675 55.000 0.00 0.00 0.00 3.69
251 252 1.648467 GGTTGGCTTGCTCACGATCC 61.648 60.000 0.00 0.00 0.00 3.36
252 253 0.674895 GTTGGCTTGCTCACGATCCT 60.675 55.000 0.00 0.00 0.00 3.24
253 254 0.901827 TTGGCTTGCTCACGATCCTA 59.098 50.000 0.00 0.00 0.00 2.94
254 255 0.175760 TGGCTTGCTCACGATCCTAC 59.824 55.000 0.00 0.00 0.00 3.18
255 256 0.872021 GGCTTGCTCACGATCCTACG 60.872 60.000 0.00 0.00 39.31 3.51
256 257 0.872021 GCTTGCTCACGATCCTACGG 60.872 60.000 0.00 0.00 37.61 4.02
257 258 0.872021 CTTGCTCACGATCCTACGGC 60.872 60.000 0.00 0.00 37.61 5.68
258 259 1.320344 TTGCTCACGATCCTACGGCT 61.320 55.000 0.00 0.00 37.61 5.52
259 260 0.464916 TGCTCACGATCCTACGGCTA 60.465 55.000 0.00 0.00 37.61 3.93
260 261 0.040246 GCTCACGATCCTACGGCTAC 60.040 60.000 0.00 0.00 37.61 3.58
261 262 1.595466 CTCACGATCCTACGGCTACT 58.405 55.000 0.00 0.00 37.61 2.57
262 263 2.763933 CTCACGATCCTACGGCTACTA 58.236 52.381 0.00 0.00 37.61 1.82
263 264 3.136763 CTCACGATCCTACGGCTACTAA 58.863 50.000 0.00 0.00 37.61 2.24
264 265 3.136763 TCACGATCCTACGGCTACTAAG 58.863 50.000 0.00 0.00 37.61 2.18
265 266 2.225963 CACGATCCTACGGCTACTAAGG 59.774 54.545 0.00 0.00 37.61 2.69
266 267 1.199558 CGATCCTACGGCTACTAAGGC 59.800 57.143 0.00 0.00 44.69 4.35
274 275 1.726853 GGCTACTAAGGCGGCATATG 58.273 55.000 13.08 0.00 38.69 1.78
275 276 1.002087 GGCTACTAAGGCGGCATATGT 59.998 52.381 13.08 6.95 38.69 2.29
276 277 2.550208 GGCTACTAAGGCGGCATATGTT 60.550 50.000 13.08 0.00 38.69 2.71
277 278 3.139077 GCTACTAAGGCGGCATATGTTT 58.861 45.455 13.08 0.00 0.00 2.83
278 279 3.564225 GCTACTAAGGCGGCATATGTTTT 59.436 43.478 13.08 0.00 0.00 2.43
279 280 4.319549 GCTACTAAGGCGGCATATGTTTTC 60.320 45.833 13.08 0.00 0.00 2.29
280 281 3.616219 ACTAAGGCGGCATATGTTTTCA 58.384 40.909 13.08 0.00 0.00 2.69
281 282 4.013728 ACTAAGGCGGCATATGTTTTCAA 58.986 39.130 13.08 0.00 0.00 2.69
282 283 3.951775 AAGGCGGCATATGTTTTCAAA 57.048 38.095 13.08 0.00 0.00 2.69
283 284 3.951775 AGGCGGCATATGTTTTCAAAA 57.048 38.095 13.08 0.00 0.00 2.44
284 285 4.470334 AGGCGGCATATGTTTTCAAAAT 57.530 36.364 13.08 0.00 0.00 1.82
285 286 5.590530 AGGCGGCATATGTTTTCAAAATA 57.409 34.783 13.08 0.00 0.00 1.40
286 287 6.160576 AGGCGGCATATGTTTTCAAAATAT 57.839 33.333 13.08 0.00 0.00 1.28
287 288 6.215845 AGGCGGCATATGTTTTCAAAATATC 58.784 36.000 13.08 0.00 0.00 1.63
288 289 5.982516 GGCGGCATATGTTTTCAAAATATCA 59.017 36.000 3.07 0.00 0.00 2.15
289 290 6.074356 GGCGGCATATGTTTTCAAAATATCAC 60.074 38.462 3.07 0.00 0.00 3.06
290 291 6.074356 GCGGCATATGTTTTCAAAATATCACC 60.074 38.462 4.29 0.00 0.00 4.02
291 292 6.420604 CGGCATATGTTTTCAAAATATCACCC 59.579 38.462 4.29 0.00 0.00 4.61
292 293 6.420604 GGCATATGTTTTCAAAATATCACCCG 59.579 38.462 4.29 0.00 0.00 5.28
293 294 6.420604 GCATATGTTTTCAAAATATCACCCGG 59.579 38.462 4.29 0.00 0.00 5.73
294 295 4.181309 TGTTTTCAAAATATCACCCGGC 57.819 40.909 0.00 0.00 0.00 6.13
295 296 3.574396 TGTTTTCAAAATATCACCCGGCA 59.426 39.130 0.00 0.00 0.00 5.69
296 297 4.173256 GTTTTCAAAATATCACCCGGCAG 58.827 43.478 0.00 0.00 0.00 4.85
297 298 3.358111 TTCAAAATATCACCCGGCAGA 57.642 42.857 0.00 0.00 0.00 4.26
298 299 2.639065 TCAAAATATCACCCGGCAGAC 58.361 47.619 0.00 0.00 0.00 3.51
299 300 1.330521 CAAAATATCACCCGGCAGACG 59.669 52.381 0.00 0.00 43.80 4.18
300 301 0.814010 AAATATCACCCGGCAGACGC 60.814 55.000 0.00 0.00 42.52 5.19
301 302 2.971428 AATATCACCCGGCAGACGCG 62.971 60.000 3.53 3.53 42.52 6.01
326 327 8.734030 CGTAGCTGCTTTATTTGTAAAAATAGC 58.266 33.333 7.79 6.28 0.00 2.97
327 328 9.567848 GTAGCTGCTTTATTTGTAAAAATAGCA 57.432 29.630 7.79 13.01 31.98 3.49
328 329 8.466086 AGCTGCTTTATTTGTAAAAATAGCAC 57.534 30.769 10.54 8.61 31.98 4.40
329 330 8.087750 AGCTGCTTTATTTGTAAAAATAGCACA 58.912 29.630 10.54 4.69 31.98 4.57
330 331 8.872845 GCTGCTTTATTTGTAAAAATAGCACAT 58.127 29.630 10.54 0.00 30.91 3.21
332 333 9.703892 TGCTTTATTTGTAAAAATAGCACATGT 57.296 25.926 10.54 0.00 0.00 3.21
348 349 7.701539 AGCACATGTATTACCATGAAAAAGA 57.298 32.000 0.00 0.00 43.99 2.52
349 350 7.765307 AGCACATGTATTACCATGAAAAAGAG 58.235 34.615 0.00 0.00 43.99 2.85
350 351 6.974622 GCACATGTATTACCATGAAAAAGAGG 59.025 38.462 0.00 0.00 43.99 3.69
366 367 2.529632 AGAGGAAATGCCAACCCTTTC 58.470 47.619 0.00 0.00 40.02 2.62
369 370 1.970640 GGAAATGCCAACCCTTTCAGT 59.029 47.619 0.00 0.00 36.34 3.41
640 645 3.423154 CCTTCCGGTCGCACTTGC 61.423 66.667 0.00 0.00 37.78 4.01
816 832 3.653539 TCAGTCAATCGGAAGAACGAA 57.346 42.857 0.00 0.00 46.92 3.85
833 849 2.290071 ACGAACCCTGGGTTTGATGTAG 60.290 50.000 40.13 23.21 46.95 2.74
834 850 2.290071 CGAACCCTGGGTTTGATGTAGT 60.290 50.000 33.66 10.23 46.95 2.73
836 852 3.994931 ACCCTGGGTTTGATGTAGTAC 57.005 47.619 14.05 0.00 27.29 2.73
837 853 3.253220 ACCCTGGGTTTGATGTAGTACA 58.747 45.455 14.05 5.24 27.29 2.90
838 854 3.653836 ACCCTGGGTTTGATGTAGTACAA 59.346 43.478 14.05 0.00 27.29 2.41
839 855 4.291249 ACCCTGGGTTTGATGTAGTACAAT 59.709 41.667 14.05 0.00 27.29 2.71
840 856 4.640201 CCCTGGGTTTGATGTAGTACAATG 59.360 45.833 7.16 0.00 0.00 2.82
844 860 4.881850 GGGTTTGATGTAGTACAATGGGAG 59.118 45.833 7.16 0.00 0.00 4.30
919 947 5.694674 AAACGTTTAAACATTGTGTGCTG 57.305 34.783 12.83 0.71 0.00 4.41
923 951 4.208873 CGTTTAAACATTGTGTGCTGCAAT 59.791 37.500 18.07 0.00 37.06 3.56
947 975 4.020928 AGTTGCATTGCTCCAAATGATCAA 60.021 37.500 10.49 0.00 39.46 2.57
956 984 3.499338 TCCAAATGATCAAGCCACACTT 58.501 40.909 0.00 0.00 40.05 3.16
958 986 4.701651 TCCAAATGATCAAGCCACACTTAG 59.298 41.667 0.00 0.00 36.04 2.18
959 987 4.701651 CCAAATGATCAAGCCACACTTAGA 59.298 41.667 0.00 0.00 36.04 2.10
961 989 5.886960 AATGATCAAGCCACACTTAGAAC 57.113 39.130 0.00 0.00 36.04 3.01
962 990 3.674997 TGATCAAGCCACACTTAGAACC 58.325 45.455 0.00 0.00 36.04 3.62
964 992 2.054799 TCAAGCCACACTTAGAACCCT 58.945 47.619 0.00 0.00 36.04 4.34
967 1002 3.185880 AGCCACACTTAGAACCCTCTA 57.814 47.619 0.00 0.00 32.70 2.43
1062 1100 0.657840 GGCATGGAACGAAATCTCCG 59.342 55.000 0.00 0.00 34.14 4.63
1110 1148 5.243207 CAGTATTTTGGGTACTCGGAGTTT 58.757 41.667 16.95 0.00 30.24 2.66
1125 1163 0.398318 AGTTTCGAGGAAGGCAGCTT 59.602 50.000 0.00 0.00 0.00 3.74
1180 1218 0.776810 TGCCCCTGTTTCCAGATTCA 59.223 50.000 0.00 0.00 41.50 2.57
1199 1250 6.833933 AGATTCATGTTTAACCCCCTGAATAC 59.166 38.462 10.18 6.66 34.45 1.89
1219 1353 8.568794 TGAATACCGATGAGATTAGTACTTCAG 58.431 37.037 0.00 0.00 0.00 3.02
1222 1356 9.961264 ATACCGATGAGATTAGTACTTCAGATA 57.039 33.333 0.00 0.00 0.00 1.98
1357 1492 2.993899 AGGCGTTGTTCTTGTTATCTCG 59.006 45.455 0.00 0.00 0.00 4.04
1373 1508 1.480954 TCTCGCCCTTGATAGGTGAAC 59.519 52.381 0.00 0.00 43.12 3.18
1377 1512 2.158900 CGCCCTTGATAGGTGAACTGAT 60.159 50.000 0.00 0.00 40.19 2.90
1392 1527 3.417069 ACTGATCCGTCATGTTTCCAA 57.583 42.857 0.00 0.00 32.98 3.53
1711 1852 5.933187 TCAATTACACACTGCAACGTAAT 57.067 34.783 0.00 0.00 36.39 1.89
1712 1853 6.307031 TCAATTACACACTGCAACGTAATT 57.693 33.333 12.89 12.89 42.40 1.40
1833 1974 4.244066 TGGTGCACAAAATTATGTCATGC 58.756 39.130 20.43 0.00 0.00 4.06
2267 2444 5.045213 TGGTCTGAATATTGCCTTTACTCCA 60.045 40.000 0.00 0.00 0.00 3.86
2281 2458 2.486472 ACTCCATTGGCAGTTCTCAG 57.514 50.000 0.00 0.00 0.00 3.35
2333 2510 3.359033 CAGCATTCCTCCTTTTCATGGA 58.641 45.455 0.00 0.00 0.00 3.41
2344 2521 6.148480 CCTCCTTTTCATGGAATAGCTAATCG 59.852 42.308 0.00 0.00 32.61 3.34
2346 2523 5.997746 CCTTTTCATGGAATAGCTAATCGGA 59.002 40.000 0.00 0.00 0.00 4.55
2382 2559 0.108329 GCAGACCTAGCTACCGCAAA 60.108 55.000 0.00 0.00 39.10 3.68
2436 2613 1.003545 CCGATATTGGCTTTGACTGCG 60.004 52.381 0.00 0.00 0.00 5.18
2458 2635 1.880027 CTGCTGTCCCAAAGTAACACC 59.120 52.381 0.00 0.00 0.00 4.16
2488 2665 6.710744 CCTTAGTTCAGTTCACCTAATGTGTT 59.289 38.462 0.00 0.00 45.61 3.32
2667 2844 7.926555 GGTATTATTCTCGACTTCCTTGATCAA 59.073 37.037 8.12 8.12 0.00 2.57
2694 2871 0.992695 ACTAGGGCCTCTGTTTTCCC 59.007 55.000 10.74 0.00 39.05 3.97
2729 2906 3.132111 TGTTCTTTGCCTTTTCACTTCCC 59.868 43.478 0.00 0.00 0.00 3.97
2769 2946 5.759273 CCCTTTTGCTTGAAATTGTGATTGA 59.241 36.000 0.00 0.00 0.00 2.57
2770 2947 6.073440 CCCTTTTGCTTGAAATTGTGATTGAG 60.073 38.462 0.00 0.00 0.00 3.02
2823 3000 3.055819 TCTGTGTTATCAGAGGCCAGAAC 60.056 47.826 5.01 0.00 39.20 3.01
2860 3037 8.081633 TGTTGTTCATTTACTGCTAAAATCTGG 58.918 33.333 0.00 0.00 0.00 3.86
2869 3046 6.368779 ACTGCTAAAATCTGGTGTACCTAA 57.631 37.500 2.32 0.00 36.82 2.69
2898 3076 4.160329 TGCCCCTACATTCTACTCTATGG 58.840 47.826 0.00 0.00 0.00 2.74
2958 3314 6.100004 TCGTTACAAGGATCTTCTTGATGAC 58.900 40.000 15.93 10.56 44.98 3.06
3061 3417 5.529800 TGTGATGATCTGACTATGCATTTGG 59.470 40.000 3.54 0.00 0.00 3.28
3103 3459 3.195661 GCTGGTACGTTAATCTGAAGGG 58.804 50.000 0.00 0.00 0.00 3.95
3104 3460 3.118884 GCTGGTACGTTAATCTGAAGGGA 60.119 47.826 0.00 0.00 0.00 4.20
3305 3661 9.050601 GTATATAGCTTCTTTCTGCATCTTTGT 57.949 33.333 0.00 0.00 0.00 2.83
3319 3675 7.386573 TCTGCATCTTTGTAAACATCGTTTCTA 59.613 33.333 0.00 0.00 0.00 2.10
3368 3724 4.073549 AGTTGTAGAGTACAGCTTCGTCT 58.926 43.478 0.00 0.00 46.11 4.18
3460 3816 9.694137 ACTAATACTCTCTGTTTTCTTGTGTAC 57.306 33.333 0.00 0.00 0.00 2.90
3475 3831 6.827641 TCTTGTGTACTGCATTTTTCGATAC 58.172 36.000 0.00 0.00 0.00 2.24
3479 3835 1.400494 ACTGCATTTTTCGATACGGGC 59.600 47.619 0.00 0.00 0.00 6.13
3482 3838 1.404035 GCATTTTTCGATACGGGCCTT 59.596 47.619 0.84 0.00 0.00 4.35
3588 3948 7.013655 CAGAGGTGCTTTGTTTATATATTGGCT 59.986 37.037 0.00 0.00 0.00 4.75
3834 4194 3.008485 AGGCTTCTCTGGTTTAACAGGAG 59.992 47.826 9.19 9.19 38.98 3.69
4280 4640 5.825593 TCTCCAGTCTTCAAAAGGTATGT 57.174 39.130 0.00 0.00 0.00 2.29
4341 4701 8.627403 CCACAGTTTTGCTTATGAGATATGAAT 58.373 33.333 0.00 0.00 0.00 2.57
4535 4895 7.219484 TGAACAATCATTTTCCTTTCCTCTC 57.781 36.000 0.00 0.00 0.00 3.20
4610 4970 4.758674 ACATCTGCTGGGAATAATGAATCG 59.241 41.667 0.00 0.00 0.00 3.34
4672 5032 4.941373 AAGCTTCCATCAAAAGGAGGGTTT 60.941 41.667 0.00 0.00 46.57 3.27
4797 5178 7.936584 ACTTCGTAAATGTTTGAGGATTTGAA 58.063 30.769 0.00 0.00 0.00 2.69
4798 5179 8.576442 ACTTCGTAAATGTTTGAGGATTTGAAT 58.424 29.630 0.00 0.00 0.00 2.57
4799 5180 9.410556 CTTCGTAAATGTTTGAGGATTTGAATT 57.589 29.630 0.00 0.00 0.00 2.17
4800 5181 9.757227 TTCGTAAATGTTTGAGGATTTGAATTT 57.243 25.926 0.00 0.00 0.00 1.82
4844 5225 9.897744 TTTATAGAAGTTGTGCTTGATCAAAAG 57.102 29.630 9.88 0.00 37.59 2.27
4881 5262 1.405105 GTGCAGCAAGTCTTGGTTTCA 59.595 47.619 14.56 12.30 39.79 2.69
4893 5274 9.231297 CAAGTCTTGGTTTCATTCCTATAGAAA 57.769 33.333 4.52 0.00 38.21 2.52
4900 5281 9.456147 TGGTTTCATTCCTATAGAAATTTTCGA 57.544 29.630 0.00 0.00 38.21 3.71
5060 5450 1.306141 TCCGTCTTGGGGATCTGCT 60.306 57.895 0.00 0.00 38.76 4.24
5093 5676 3.189080 CCGCTCTGTCATGATTTTGTTGA 59.811 43.478 0.00 0.00 0.00 3.18
5198 5784 2.846193 TCTGCTACACACCTTGAAACC 58.154 47.619 0.00 0.00 0.00 3.27
5420 6006 2.699954 GCAGAAGCTACAGTAAGCCAA 58.300 47.619 0.00 0.00 43.86 4.52
5493 6079 1.821136 CTGAAAACATGGAGCCTTCCC 59.179 52.381 0.00 0.00 43.33 3.97
5494 6080 0.811281 GAAAACATGGAGCCTTCCCG 59.189 55.000 0.00 0.00 43.33 5.14
5514 6100 2.549992 CGGATGTCACCACCTGAGAAAA 60.550 50.000 0.00 0.00 0.00 2.29
5516 6102 3.476552 GATGTCACCACCTGAGAAAACA 58.523 45.455 0.00 0.00 0.00 2.83
5534 6120 3.152261 ACAATAGACGAAGAAGCGAGG 57.848 47.619 0.00 0.00 34.83 4.63
5678 6264 0.107459 CTAGAAAGGCTGGCCCTGTC 60.107 60.000 8.11 0.00 46.90 3.51
5751 6337 6.647067 AGTGACTACTTCTCTGTTTTACATGC 59.353 38.462 0.00 0.00 31.66 4.06
5770 6356 3.157087 TGCTGACTTCCTCCCAAAATTC 58.843 45.455 0.00 0.00 0.00 2.17
5792 6378 7.825331 TTCCACAGTAGGAATATGACTAGAG 57.175 40.000 0.00 0.00 42.56 2.43
5820 6406 6.726258 TGCTGATACAGTAATCAAACACTG 57.274 37.500 0.36 0.36 46.15 3.66
5821 6407 5.122239 TGCTGATACAGTAATCAAACACTGC 59.878 40.000 1.78 0.00 44.89 4.40
5869 6455 3.938334 CCTCTCTTAAAAGGAGAAGCTGC 59.062 47.826 0.00 0.00 39.04 5.25
5969 6557 0.675837 GTTCGGTTAAGCCACTCCCC 60.676 60.000 0.00 0.00 36.97 4.81
6004 6592 0.105504 GAATGGAGGGGATTTGGGGG 60.106 60.000 0.00 0.00 0.00 5.40
6005 6593 0.557397 AATGGAGGGGATTTGGGGGA 60.557 55.000 0.00 0.00 0.00 4.81
6038 6626 8.324191 ACTAGATGAGATTTAATCCCTGTCAA 57.676 34.615 0.00 0.00 0.00 3.18
6057 6645 5.188434 GTCAATCCCTCTCATTTGTCATGA 58.812 41.667 0.00 0.00 0.00 3.07
6068 6656 6.016360 TCTCATTTGTCATGAAACCGAACAAT 60.016 34.615 0.00 0.00 0.00 2.71
6069 6657 5.919707 TCATTTGTCATGAAACCGAACAATG 59.080 36.000 0.00 0.00 0.00 2.82
6149 6833 7.625185 GCCTTGTGTATCTCAGTGAAAGATTTC 60.625 40.741 0.63 0.00 35.20 2.17
6154 6838 7.491048 GTGTATCTCAGTGAAAGATTTCCTCTC 59.509 40.741 3.00 0.00 36.36 3.20
6155 6839 6.872585 ATCTCAGTGAAAGATTTCCTCTCT 57.127 37.500 3.00 0.00 36.36 3.10
6156 6840 6.279513 TCTCAGTGAAAGATTTCCTCTCTC 57.720 41.667 3.00 0.00 36.36 3.20
6191 6875 4.054671 GAGAACCTGTGAGAAGAGTTGTG 58.945 47.826 0.00 0.00 0.00 3.33
6192 6876 2.246719 ACCTGTGAGAAGAGTTGTGC 57.753 50.000 0.00 0.00 0.00 4.57
6201 6888 4.467438 TGAGAAGAGTTGTGCCAGATATCA 59.533 41.667 5.32 0.00 0.00 2.15
6202 6889 5.129980 TGAGAAGAGTTGTGCCAGATATCAT 59.870 40.000 5.32 0.00 0.00 2.45
6203 6890 6.324770 TGAGAAGAGTTGTGCCAGATATCATA 59.675 38.462 5.32 0.00 0.00 2.15
6285 6972 5.031066 TGGAACTAACACCCTATGTATGC 57.969 43.478 0.00 0.00 42.31 3.14
6638 7328 5.416013 TGTTATTACGTGCATGATTTTCCCA 59.584 36.000 14.17 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.041090 AAAATCCCCCTCGCACCAAT 59.959 50.000 0.00 0.00 0.00 3.16
1 2 0.178947 AAAAATCCCCCTCGCACCAA 60.179 50.000 0.00 0.00 0.00 3.67
2 3 1.462928 AAAAATCCCCCTCGCACCA 59.537 52.632 0.00 0.00 0.00 4.17
3 4 4.434483 AAAAATCCCCCTCGCACC 57.566 55.556 0.00 0.00 0.00 5.01
22 23 0.395586 AGAGGCCTGTTGCACAAACA 60.396 50.000 12.00 0.00 46.66 2.83
23 24 0.746659 AAGAGGCCTGTTGCACAAAC 59.253 50.000 15.58 0.00 43.89 2.93
24 25 0.746063 CAAGAGGCCTGTTGCACAAA 59.254 50.000 27.80 0.00 43.89 2.83
25 26 0.395586 ACAAGAGGCCTGTTGCACAA 60.396 50.000 35.72 0.00 43.89 3.33
26 27 0.395586 AACAAGAGGCCTGTTGCACA 60.396 50.000 35.72 0.00 43.89 4.57
27 28 0.031178 CAACAAGAGGCCTGTTGCAC 59.969 55.000 35.72 10.65 43.89 4.57
28 29 2.417978 CAACAAGAGGCCTGTTGCA 58.582 52.632 35.72 0.00 43.89 4.08
30 31 1.662044 GGCAACAAGAGGCCTGTTG 59.338 57.895 34.56 34.56 46.74 3.33
31 32 4.181051 GGCAACAAGAGGCCTGTT 57.819 55.556 12.00 10.79 46.74 3.16
43 44 2.954611 GCTCGTTCCCTTGGCAAC 59.045 61.111 0.00 0.00 0.00 4.17
44 45 2.668212 CGCTCGTTCCCTTGGCAA 60.668 61.111 0.00 0.00 0.00 4.52
47 48 3.423154 GTGCGCTCGTTCCCTTGG 61.423 66.667 9.73 0.00 0.00 3.61
48 49 1.577328 ATTGTGCGCTCGTTCCCTTG 61.577 55.000 9.73 0.00 0.00 3.61
49 50 1.302511 ATTGTGCGCTCGTTCCCTT 60.303 52.632 9.73 0.00 0.00 3.95
50 51 2.034879 CATTGTGCGCTCGTTCCCT 61.035 57.895 9.73 0.00 0.00 4.20
51 52 2.480555 CATTGTGCGCTCGTTCCC 59.519 61.111 9.73 0.00 0.00 3.97
52 53 2.202349 GCATTGTGCGCTCGTTCC 60.202 61.111 9.73 0.00 31.71 3.62
61 62 1.451651 GCAACAAACGTAGCATTGTGC 59.548 47.619 4.22 6.76 45.46 4.57
62 63 2.725490 TGCAACAAACGTAGCATTGTG 58.275 42.857 4.22 1.38 39.41 3.33
63 64 3.112580 GTTGCAACAAACGTAGCATTGT 58.887 40.909 24.52 0.00 41.55 2.71
64 65 2.150985 CGTTGCAACAAACGTAGCATTG 59.849 45.455 28.01 4.26 46.02 2.82
65 66 2.380660 CGTTGCAACAAACGTAGCATT 58.619 42.857 28.01 0.00 46.02 3.56
66 67 2.031037 CGTTGCAACAAACGTAGCAT 57.969 45.000 28.01 0.00 46.02 3.79
67 68 3.518017 CGTTGCAACAAACGTAGCA 57.482 47.368 28.01 0.00 46.02 3.49
73 74 1.151172 CTTGCCCCGTTGCAACAAAC 61.151 55.000 28.01 14.74 45.77 2.93
74 75 1.142748 CTTGCCCCGTTGCAACAAA 59.857 52.632 28.01 12.90 45.77 2.83
75 76 1.733402 CTCTTGCCCCGTTGCAACAA 61.733 55.000 28.01 13.85 45.77 2.83
76 77 2.124109 TCTTGCCCCGTTGCAACA 60.124 55.556 28.01 6.49 45.77 3.33
77 78 2.644992 CTCTTGCCCCGTTGCAAC 59.355 61.111 19.89 19.89 45.77 4.17
79 80 4.577677 TGCTCTTGCCCCGTTGCA 62.578 61.111 0.00 0.00 40.07 4.08
80 81 2.753931 CTTTGCTCTTGCCCCGTTGC 62.754 60.000 0.00 0.00 38.71 4.17
81 82 1.286880 CTTTGCTCTTGCCCCGTTG 59.713 57.895 0.00 0.00 38.71 4.10
82 83 1.903404 CCTTTGCTCTTGCCCCGTT 60.903 57.895 0.00 0.00 38.71 4.44
83 84 2.282462 CCTTTGCTCTTGCCCCGT 60.282 61.111 0.00 0.00 38.71 5.28
84 85 1.463553 AAACCTTTGCTCTTGCCCCG 61.464 55.000 0.00 0.00 38.71 5.73
85 86 0.758734 AAAACCTTTGCTCTTGCCCC 59.241 50.000 0.00 0.00 38.71 5.80
86 87 2.620251 AAAAACCTTTGCTCTTGCCC 57.380 45.000 0.00 0.00 38.71 5.36
126 127 3.801114 AAAGGCCTGTGTTTCAGAAAC 57.199 42.857 17.85 17.85 46.27 2.78
127 128 4.221703 TGAAAAAGGCCTGTGTTTCAGAAA 59.778 37.500 24.97 10.87 46.27 2.52
128 129 3.766591 TGAAAAAGGCCTGTGTTTCAGAA 59.233 39.130 24.97 11.13 46.27 3.02
129 130 3.360867 TGAAAAAGGCCTGTGTTTCAGA 58.639 40.909 24.97 11.65 46.27 3.27
130 131 3.709987 CTGAAAAAGGCCTGTGTTTCAG 58.290 45.455 31.92 31.92 46.08 3.02
131 132 3.360867 TCTGAAAAAGGCCTGTGTTTCA 58.639 40.909 26.11 26.11 37.58 2.69
132 133 4.097892 TCTTCTGAAAAAGGCCTGTGTTTC 59.902 41.667 21.66 21.66 0.00 2.78
133 134 4.023291 TCTTCTGAAAAAGGCCTGTGTTT 58.977 39.130 5.69 7.62 0.00 2.83
134 135 3.631250 TCTTCTGAAAAAGGCCTGTGTT 58.369 40.909 5.69 0.00 0.00 3.32
135 136 3.297134 TCTTCTGAAAAAGGCCTGTGT 57.703 42.857 5.69 0.00 0.00 3.72
136 137 4.654091 TTTCTTCTGAAAAAGGCCTGTG 57.346 40.909 5.69 0.00 39.02 3.66
158 159 1.555477 CGCTTCTGCCAAACGTTTTT 58.445 45.000 11.66 0.00 35.36 1.94
159 160 0.869880 GCGCTTCTGCCAAACGTTTT 60.870 50.000 11.66 0.00 35.36 2.43
160 161 1.299089 GCGCTTCTGCCAAACGTTT 60.299 52.632 7.96 7.96 35.36 3.60
161 162 1.999071 TTGCGCTTCTGCCAAACGTT 61.999 50.000 9.73 0.00 35.36 3.99
162 163 2.477176 TTGCGCTTCTGCCAAACGT 61.477 52.632 9.73 0.00 35.36 3.99
163 164 2.010817 GTTGCGCTTCTGCCAAACG 61.011 57.895 9.73 0.00 33.52 3.60
164 165 1.065600 TGTTGCGCTTCTGCCAAAC 59.934 52.632 9.73 2.08 33.52 2.93
165 166 1.065600 GTGTTGCGCTTCTGCCAAA 59.934 52.632 9.73 0.00 33.52 3.28
166 167 1.661498 TTGTGTTGCGCTTCTGCCAA 61.661 50.000 9.73 1.21 35.36 4.52
167 168 2.062361 CTTGTGTTGCGCTTCTGCCA 62.062 55.000 9.73 0.00 35.36 4.92
168 169 1.370900 CTTGTGTTGCGCTTCTGCC 60.371 57.895 9.73 0.00 35.36 4.85
169 170 2.012948 GCTTGTGTTGCGCTTCTGC 61.013 57.895 9.73 0.00 0.00 4.26
170 171 0.029834 AAGCTTGTGTTGCGCTTCTG 59.970 50.000 9.73 0.00 39.62 3.02
171 172 0.740737 AAAGCTTGTGTTGCGCTTCT 59.259 45.000 9.73 0.00 42.65 2.85
172 173 2.399396 TAAAGCTTGTGTTGCGCTTC 57.601 45.000 9.73 1.72 42.65 3.86
173 174 3.052036 CAATAAAGCTTGTGTTGCGCTT 58.948 40.909 9.73 0.00 45.13 4.68
174 175 2.664916 CAATAAAGCTTGTGTTGCGCT 58.335 42.857 9.73 0.00 35.09 5.92
175 176 1.124839 GCAATAAAGCTTGTGTTGCGC 59.875 47.619 20.68 0.00 36.27 6.09
176 177 2.392821 TGCAATAAAGCTTGTGTTGCG 58.607 42.857 25.55 6.28 45.94 4.85
177 178 4.318974 CCTTTGCAATAAAGCTTGTGTTGC 60.319 41.667 25.06 25.06 43.93 4.17
178 179 4.810491 ACCTTTGCAATAAAGCTTGTGTTG 59.190 37.500 0.00 7.03 34.99 3.33
179 180 5.022282 ACCTTTGCAATAAAGCTTGTGTT 57.978 34.783 0.00 0.00 34.99 3.32
180 181 4.670896 ACCTTTGCAATAAAGCTTGTGT 57.329 36.364 0.00 0.00 34.99 3.72
181 182 5.049167 TCAACCTTTGCAATAAAGCTTGTG 58.951 37.500 0.00 0.00 34.99 3.33
182 183 5.275067 TCAACCTTTGCAATAAAGCTTGT 57.725 34.783 0.00 0.00 34.99 3.16
183 184 5.390145 GCATCAACCTTTGCAATAAAGCTTG 60.390 40.000 0.00 0.00 38.72 4.01
184 185 4.692155 GCATCAACCTTTGCAATAAAGCTT 59.308 37.500 0.00 0.00 38.72 3.74
185 186 4.248058 GCATCAACCTTTGCAATAAAGCT 58.752 39.130 0.00 0.00 38.72 3.74
186 187 3.995705 TGCATCAACCTTTGCAATAAAGC 59.004 39.130 0.00 0.00 45.30 3.51
193 194 1.007502 GCGTGCATCAACCTTTGCA 60.008 52.632 0.00 0.00 46.03 4.08
194 195 0.730494 GAGCGTGCATCAACCTTTGC 60.730 55.000 0.00 0.00 39.33 3.68
195 196 0.592637 TGAGCGTGCATCAACCTTTG 59.407 50.000 0.00 0.00 0.00 2.77
196 197 1.317613 TTGAGCGTGCATCAACCTTT 58.682 45.000 0.00 0.00 31.86 3.11
197 198 1.538047 ATTGAGCGTGCATCAACCTT 58.462 45.000 3.42 0.00 39.36 3.50
198 199 2.401583 TATTGAGCGTGCATCAACCT 57.598 45.000 3.42 0.00 39.36 3.50
199 200 3.485947 TTTATTGAGCGTGCATCAACC 57.514 42.857 3.42 0.00 39.36 3.77
219 220 4.502087 GCAAGCCAACCTTCTGATCTTTTT 60.502 41.667 0.00 0.00 0.00 1.94
220 221 3.006217 GCAAGCCAACCTTCTGATCTTTT 59.994 43.478 0.00 0.00 0.00 2.27
221 222 2.560105 GCAAGCCAACCTTCTGATCTTT 59.440 45.455 0.00 0.00 0.00 2.52
222 223 2.165998 GCAAGCCAACCTTCTGATCTT 58.834 47.619 0.00 0.00 0.00 2.40
223 224 1.353694 AGCAAGCCAACCTTCTGATCT 59.646 47.619 0.00 0.00 0.00 2.75
224 225 1.742268 GAGCAAGCCAACCTTCTGATC 59.258 52.381 0.00 0.00 0.00 2.92
225 226 1.074405 TGAGCAAGCCAACCTTCTGAT 59.926 47.619 0.00 0.00 0.00 2.90
226 227 0.473755 TGAGCAAGCCAACCTTCTGA 59.526 50.000 0.00 0.00 0.00 3.27
227 228 0.595095 GTGAGCAAGCCAACCTTCTG 59.405 55.000 0.00 0.00 0.00 3.02
228 229 0.886490 CGTGAGCAAGCCAACCTTCT 60.886 55.000 0.00 0.00 0.00 2.85
229 230 0.884704 TCGTGAGCAAGCCAACCTTC 60.885 55.000 0.00 0.00 0.00 3.46
230 231 0.250901 ATCGTGAGCAAGCCAACCTT 60.251 50.000 0.00 0.00 0.00 3.50
231 232 0.674895 GATCGTGAGCAAGCCAACCT 60.675 55.000 0.00 0.00 0.00 3.50
232 233 1.648467 GGATCGTGAGCAAGCCAACC 61.648 60.000 0.00 0.00 0.00 3.77
233 234 0.674895 AGGATCGTGAGCAAGCCAAC 60.675 55.000 0.00 0.00 0.00 3.77
234 235 0.901827 TAGGATCGTGAGCAAGCCAA 59.098 50.000 0.00 0.00 0.00 4.52
235 236 0.175760 GTAGGATCGTGAGCAAGCCA 59.824 55.000 0.00 0.00 0.00 4.75
236 237 0.872021 CGTAGGATCGTGAGCAAGCC 60.872 60.000 0.00 0.00 0.00 4.35
237 238 2.582959 CGTAGGATCGTGAGCAAGC 58.417 57.895 0.00 0.00 0.00 4.01
251 252 1.007618 GCCGCCTTAGTAGCCGTAG 60.008 63.158 0.00 0.00 0.00 3.51
252 253 1.111116 ATGCCGCCTTAGTAGCCGTA 61.111 55.000 0.00 0.00 0.00 4.02
253 254 1.111116 TATGCCGCCTTAGTAGCCGT 61.111 55.000 0.00 0.00 0.00 5.68
254 255 0.246635 ATATGCCGCCTTAGTAGCCG 59.753 55.000 0.00 0.00 0.00 5.52
255 256 1.002087 ACATATGCCGCCTTAGTAGCC 59.998 52.381 1.58 0.00 0.00 3.93
256 257 2.457366 ACATATGCCGCCTTAGTAGC 57.543 50.000 1.58 0.00 0.00 3.58
257 258 4.814234 TGAAAACATATGCCGCCTTAGTAG 59.186 41.667 1.58 0.00 0.00 2.57
258 259 4.771903 TGAAAACATATGCCGCCTTAGTA 58.228 39.130 1.58 0.00 0.00 1.82
259 260 3.616219 TGAAAACATATGCCGCCTTAGT 58.384 40.909 1.58 0.00 0.00 2.24
260 261 4.630894 TTGAAAACATATGCCGCCTTAG 57.369 40.909 1.58 0.00 0.00 2.18
261 262 5.392767 TTTTGAAAACATATGCCGCCTTA 57.607 34.783 1.58 0.00 0.00 2.69
262 263 3.951775 TTTGAAAACATATGCCGCCTT 57.048 38.095 1.58 0.00 0.00 4.35
263 264 3.951775 TTTTGAAAACATATGCCGCCT 57.048 38.095 1.58 0.00 0.00 5.52
264 265 5.982516 TGATATTTTGAAAACATATGCCGCC 59.017 36.000 1.58 0.00 0.00 6.13
265 266 6.074356 GGTGATATTTTGAAAACATATGCCGC 60.074 38.462 1.58 0.00 0.00 6.53
266 267 6.420604 GGGTGATATTTTGAAAACATATGCCG 59.579 38.462 1.58 0.00 0.00 5.69
267 268 6.420604 CGGGTGATATTTTGAAAACATATGCC 59.579 38.462 1.58 0.00 0.00 4.40
268 269 6.420604 CCGGGTGATATTTTGAAAACATATGC 59.579 38.462 1.58 0.00 0.00 3.14
269 270 6.420604 GCCGGGTGATATTTTGAAAACATATG 59.579 38.462 2.18 0.00 0.00 1.78
270 271 6.097554 TGCCGGGTGATATTTTGAAAACATAT 59.902 34.615 2.18 0.00 0.00 1.78
271 272 5.419155 TGCCGGGTGATATTTTGAAAACATA 59.581 36.000 2.18 0.00 0.00 2.29
272 273 4.221703 TGCCGGGTGATATTTTGAAAACAT 59.778 37.500 2.18 0.00 0.00 2.71
273 274 3.574396 TGCCGGGTGATATTTTGAAAACA 59.426 39.130 2.18 0.00 0.00 2.83
274 275 4.082463 TCTGCCGGGTGATATTTTGAAAAC 60.082 41.667 2.18 0.00 0.00 2.43
275 276 4.082463 GTCTGCCGGGTGATATTTTGAAAA 60.082 41.667 2.18 0.00 0.00 2.29
276 277 3.442273 GTCTGCCGGGTGATATTTTGAAA 59.558 43.478 2.18 0.00 0.00 2.69
277 278 3.013921 GTCTGCCGGGTGATATTTTGAA 58.986 45.455 2.18 0.00 0.00 2.69
278 279 2.639065 GTCTGCCGGGTGATATTTTGA 58.361 47.619 2.18 0.00 0.00 2.69
279 280 1.330521 CGTCTGCCGGGTGATATTTTG 59.669 52.381 2.18 0.00 0.00 2.44
280 281 1.663695 CGTCTGCCGGGTGATATTTT 58.336 50.000 2.18 0.00 0.00 1.82
281 282 0.814010 GCGTCTGCCGGGTGATATTT 60.814 55.000 2.18 0.00 36.94 1.40
282 283 1.227556 GCGTCTGCCGGGTGATATT 60.228 57.895 2.18 0.00 36.94 1.28
283 284 2.421739 GCGTCTGCCGGGTGATAT 59.578 61.111 2.18 0.00 36.94 1.63
284 285 4.201679 CGCGTCTGCCGGGTGATA 62.202 66.667 2.18 0.00 43.84 2.15
294 295 1.560923 ATAAAGCAGCTACGCGTCTG 58.439 50.000 18.63 19.69 36.85 3.51
295 296 2.295253 AATAAAGCAGCTACGCGTCT 57.705 45.000 18.63 4.34 36.85 4.18
296 297 2.093783 ACAAATAAAGCAGCTACGCGTC 59.906 45.455 18.63 1.13 36.85 5.19
297 298 2.073816 ACAAATAAAGCAGCTACGCGT 58.926 42.857 19.17 19.17 36.85 6.01
298 299 2.806288 ACAAATAAAGCAGCTACGCG 57.194 45.000 3.53 3.53 36.85 6.01
299 300 6.921332 TTTTTACAAATAAAGCAGCTACGC 57.079 33.333 0.00 0.00 31.90 4.42
300 301 8.734030 GCTATTTTTACAAATAAAGCAGCTACG 58.266 33.333 0.00 0.00 35.38 3.51
301 302 9.567848 TGCTATTTTTACAAATAAAGCAGCTAC 57.432 29.630 7.43 0.00 38.34 3.58
302 303 9.567848 GTGCTATTTTTACAAATAAAGCAGCTA 57.432 29.630 10.62 0.00 41.50 3.32
303 304 8.087750 TGTGCTATTTTTACAAATAAAGCAGCT 58.912 29.630 10.62 0.00 41.50 4.24
304 305 8.238481 TGTGCTATTTTTACAAATAAAGCAGC 57.762 30.769 10.62 5.84 41.50 5.25
306 307 9.703892 ACATGTGCTATTTTTACAAATAAAGCA 57.296 25.926 0.00 7.43 39.84 3.91
322 323 9.407380 TCTTTTTCATGGTAATACATGTGCTAT 57.593 29.630 9.11 0.00 46.39 2.97
323 324 8.800370 TCTTTTTCATGGTAATACATGTGCTA 57.200 30.769 9.11 0.00 46.39 3.49
324 325 7.148018 CCTCTTTTTCATGGTAATACATGTGCT 60.148 37.037 9.11 0.00 46.39 4.40
325 326 6.974622 CCTCTTTTTCATGGTAATACATGTGC 59.025 38.462 9.11 0.00 46.39 4.57
326 327 8.279970 TCCTCTTTTTCATGGTAATACATGTG 57.720 34.615 9.11 0.00 46.39 3.21
327 328 8.877864 TTCCTCTTTTTCATGGTAATACATGT 57.122 30.769 2.69 2.69 46.39 3.21
330 331 8.250332 GCATTTCCTCTTTTTCATGGTAATACA 58.750 33.333 0.00 0.00 0.00 2.29
331 332 7.706607 GGCATTTCCTCTTTTTCATGGTAATAC 59.293 37.037 0.00 0.00 0.00 1.89
332 333 7.398618 TGGCATTTCCTCTTTTTCATGGTAATA 59.601 33.333 0.00 0.00 35.26 0.98
333 334 6.213195 TGGCATTTCCTCTTTTTCATGGTAAT 59.787 34.615 0.00 0.00 35.26 1.89
334 335 5.541868 TGGCATTTCCTCTTTTTCATGGTAA 59.458 36.000 0.00 0.00 35.26 2.85
335 336 5.083122 TGGCATTTCCTCTTTTTCATGGTA 58.917 37.500 0.00 0.00 35.26 3.25
336 337 3.903090 TGGCATTTCCTCTTTTTCATGGT 59.097 39.130 0.00 0.00 35.26 3.55
337 338 4.540359 TGGCATTTCCTCTTTTTCATGG 57.460 40.909 0.00 0.00 35.26 3.66
338 339 4.692155 GGTTGGCATTTCCTCTTTTTCATG 59.308 41.667 0.00 0.00 35.26 3.07
339 340 4.263025 GGGTTGGCATTTCCTCTTTTTCAT 60.263 41.667 0.00 0.00 35.26 2.57
340 341 3.070878 GGGTTGGCATTTCCTCTTTTTCA 59.929 43.478 0.00 0.00 35.26 2.69
341 342 3.324846 AGGGTTGGCATTTCCTCTTTTTC 59.675 43.478 0.00 0.00 35.26 2.29
342 343 3.317406 AGGGTTGGCATTTCCTCTTTTT 58.683 40.909 0.00 0.00 35.26 1.94
343 344 2.976440 AGGGTTGGCATTTCCTCTTTT 58.024 42.857 0.00 0.00 35.26 2.27
344 345 2.702270 AGGGTTGGCATTTCCTCTTT 57.298 45.000 0.00 0.00 35.26 2.52
345 346 2.702270 AAGGGTTGGCATTTCCTCTT 57.298 45.000 4.62 4.07 35.26 2.85
346 347 2.158325 TGAAAGGGTTGGCATTTCCTCT 60.158 45.455 8.39 0.00 33.05 3.69
347 348 2.232208 CTGAAAGGGTTGGCATTTCCTC 59.768 50.000 8.39 0.00 33.05 3.71
348 349 2.250924 CTGAAAGGGTTGGCATTTCCT 58.749 47.619 8.39 3.91 33.05 3.36
349 350 1.970640 ACTGAAAGGGTTGGCATTTCC 59.029 47.619 8.39 2.81 39.30 3.13
350 351 2.627699 TCACTGAAAGGGTTGGCATTTC 59.372 45.455 4.70 4.70 39.54 2.17
816 832 3.253220 TGTACTACATCAAACCCAGGGT 58.747 45.455 4.76 4.76 37.65 4.34
833 849 3.096092 TGGCAAATTCCTCCCATTGTAC 58.904 45.455 0.00 0.00 0.00 2.90
834 850 3.464720 TGGCAAATTCCTCCCATTGTA 57.535 42.857 0.00 0.00 0.00 2.41
836 852 2.767394 TCATGGCAAATTCCTCCCATTG 59.233 45.455 0.00 0.00 35.97 2.82
837 853 2.767960 GTCATGGCAAATTCCTCCCATT 59.232 45.455 0.00 0.00 35.97 3.16
838 854 2.023695 AGTCATGGCAAATTCCTCCCAT 60.024 45.455 0.00 0.00 38.56 4.00
839 855 1.358787 AGTCATGGCAAATTCCTCCCA 59.641 47.619 0.00 0.00 0.00 4.37
840 856 2.149973 AGTCATGGCAAATTCCTCCC 57.850 50.000 0.00 0.00 0.00 4.30
844 860 8.169977 TGATTTAGATAGTCATGGCAAATTCC 57.830 34.615 0.00 0.00 0.00 3.01
901 929 5.655893 ATTGCAGCACACAATGTTTAAAC 57.344 34.783 11.54 11.54 36.41 2.01
902 930 6.511416 ACTATTGCAGCACACAATGTTTAAA 58.489 32.000 0.00 0.00 38.20 1.52
903 931 6.083098 ACTATTGCAGCACACAATGTTTAA 57.917 33.333 0.00 0.00 38.20 1.52
904 932 5.703978 ACTATTGCAGCACACAATGTTTA 57.296 34.783 0.00 0.00 38.20 2.01
905 933 4.589216 ACTATTGCAGCACACAATGTTT 57.411 36.364 0.00 0.00 38.20 2.83
906 934 4.300803 CAACTATTGCAGCACACAATGTT 58.699 39.130 0.00 8.01 38.20 2.71
907 935 3.904571 CAACTATTGCAGCACACAATGT 58.095 40.909 0.00 0.00 38.20 2.71
923 951 4.705991 TGATCATTTGGAGCAATGCAACTA 59.294 37.500 8.35 0.00 39.36 2.24
947 975 2.031495 AGAGGGTTCTAAGTGTGGCT 57.969 50.000 0.00 0.00 0.00 4.75
956 984 6.615617 AGCATCAGACTATTAGAGGGTTCTA 58.384 40.000 0.00 0.00 34.79 2.10
958 986 5.799827 AGCATCAGACTATTAGAGGGTTC 57.200 43.478 0.00 0.00 0.00 3.62
959 987 6.352516 CAAAGCATCAGACTATTAGAGGGTT 58.647 40.000 0.00 0.00 35.64 4.11
961 989 5.303971 CCAAAGCATCAGACTATTAGAGGG 58.696 45.833 0.00 0.00 0.00 4.30
962 990 5.163258 ACCCAAAGCATCAGACTATTAGAGG 60.163 44.000 0.00 0.00 0.00 3.69
964 992 5.396772 CCACCCAAAGCATCAGACTATTAGA 60.397 44.000 0.00 0.00 0.00 2.10
967 1002 3.010584 ACCACCCAAAGCATCAGACTATT 59.989 43.478 0.00 0.00 0.00 1.73
1029 1067 1.031571 CATGCCTTAAGCCTGCCGAA 61.032 55.000 0.00 0.00 42.71 4.30
1040 1078 3.541632 GGAGATTTCGTTCCATGCCTTA 58.458 45.455 0.00 0.00 33.55 2.69
1041 1079 2.369394 GGAGATTTCGTTCCATGCCTT 58.631 47.619 0.00 0.00 33.55 4.35
1062 1100 1.140804 GACGCTCTCCAGCTCCTTC 59.859 63.158 0.00 0.00 44.40 3.46
1110 1148 1.593787 CTCAAGCTGCCTTCCTCGA 59.406 57.895 0.00 0.00 0.00 4.04
1180 1218 3.524380 TCGGTATTCAGGGGGTTAAACAT 59.476 43.478 0.00 0.00 0.00 2.71
1241 1376 4.874966 CCTTCCTGCAAATTTGTTGTTTGA 59.125 37.500 19.03 5.67 38.51 2.69
1373 1508 3.119849 GGTTTGGAAACATGACGGATCAG 60.120 47.826 0.00 0.00 42.32 2.90
1377 1512 2.649531 AGGTTTGGAAACATGACGGA 57.350 45.000 0.00 0.00 42.32 4.69
1392 1527 9.847224 TTTCAAGTAGTAGATTTTCTGAAGGTT 57.153 29.630 0.00 0.00 0.00 3.50
2029 2205 3.573967 CCCTGTTGTGGAGCTTTGTTAAT 59.426 43.478 0.00 0.00 0.00 1.40
2267 2444 6.006449 ACTATGAAAACTGAGAACTGCCAAT 58.994 36.000 0.00 0.00 0.00 3.16
2333 2510 4.960938 TGAAGCACATCCGATTAGCTATT 58.039 39.130 0.00 0.00 34.66 1.73
2344 2521 3.852286 TGCATTTCATTGAAGCACATCC 58.148 40.909 8.73 0.00 0.00 3.51
2346 2523 4.491676 GTCTGCATTTCATTGAAGCACAT 58.508 39.130 8.73 0.00 0.00 3.21
2382 2559 6.350780 GGAACTGCTTCCTCAATGATGAAATT 60.351 38.462 2.81 0.00 42.72 1.82
2436 2613 2.548480 GTGTTACTTTGGGACAGCAGTC 59.452 50.000 0.00 0.00 42.39 3.51
2458 2635 5.485209 AGGTGAACTGAACTAAGGGTAAG 57.515 43.478 0.00 0.00 0.00 2.34
2528 2705 3.682377 GGTGCAAAAATAATGAAACCCGG 59.318 43.478 0.00 0.00 0.00 5.73
2667 2844 5.780958 AACAGAGGCCCTAGTCTTTAAAT 57.219 39.130 0.00 0.00 0.00 1.40
2694 2871 3.190118 GCAAAGAACAGTGGAGATTCCTG 59.810 47.826 0.00 0.00 37.46 3.86
2769 2946 7.398024 AGAACATAAATAGTCCTGAAGCAACT 58.602 34.615 0.00 0.00 0.00 3.16
2770 2947 7.617041 AGAACATAAATAGTCCTGAAGCAAC 57.383 36.000 0.00 0.00 0.00 4.17
2810 2987 0.824109 CCATACGTTCTGGCCTCTGA 59.176 55.000 3.32 0.00 0.00 3.27
2823 3000 4.685169 AATGAACAACAAGAGCCATACG 57.315 40.909 0.00 0.00 0.00 3.06
2832 3009 9.683069 AGATTTTAGCAGTAAATGAACAACAAG 57.317 29.630 0.00 0.00 0.00 3.16
2898 3076 2.480037 TCATGATTCACAGTCAACACGC 59.520 45.455 0.00 0.00 0.00 5.34
3061 3417 1.375098 GAAGAGATGCCCTGCTGTGC 61.375 60.000 0.00 0.00 0.00 4.57
3305 3661 9.146984 CAGGTTGTAAGATAGAAACGATGTTTA 57.853 33.333 0.00 0.00 0.00 2.01
3319 3675 5.044919 TGGACATGGAATCAGGTTGTAAGAT 60.045 40.000 0.00 0.00 38.09 2.40
3437 3793 7.171678 GCAGTACACAAGAAAACAGAGAGTATT 59.828 37.037 0.00 0.00 0.00 1.89
3445 3801 7.513505 CGAAAAATGCAGTACACAAGAAAACAG 60.514 37.037 0.00 0.00 0.00 3.16
3446 3802 6.252441 CGAAAAATGCAGTACACAAGAAAACA 59.748 34.615 0.00 0.00 0.00 2.83
3460 3816 1.268539 GGCCCGTATCGAAAAATGCAG 60.269 52.381 0.00 0.00 0.00 4.41
3479 3835 6.910433 GCATACACATTAAAATACGGACAAGG 59.090 38.462 0.00 0.00 0.00 3.61
3482 3838 6.457663 GCAGCATACACATTAAAATACGGACA 60.458 38.462 0.00 0.00 0.00 4.02
3488 3844 6.601217 TGTGGAGCAGCATACACATTAAAATA 59.399 34.615 11.42 0.00 38.76 1.40
3834 4194 5.979517 ACTGCTGCTGTTTCTCAAAATAAAC 59.020 36.000 6.33 0.00 36.38 2.01
3992 4352 3.025322 ACTATCTGTGTCAGGAGAGGG 57.975 52.381 0.00 0.00 31.51 4.30
4142 4502 5.650266 TGGCATAAAGTTGGTTGTACCTATG 59.350 40.000 0.00 0.00 39.58 2.23
4280 4640 0.679321 TTGCTGCACAGTGAACACCA 60.679 50.000 4.15 0.00 0.00 4.17
4521 4881 5.261216 ACAAACACAGAGAGGAAAGGAAAA 58.739 37.500 0.00 0.00 0.00 2.29
4535 4895 5.006358 ACTTTGCGTAGTCTTACAAACACAG 59.994 40.000 0.00 0.00 0.00 3.66
4610 4970 0.540923 ACTGCCTCTTCCTCATCTGC 59.459 55.000 0.00 0.00 0.00 4.26
4672 5032 2.574006 AGGCATCAAGTCTTGCTTCA 57.426 45.000 7.78 0.00 38.88 3.02
4726 5086 1.134037 ACCTGCGGTTTAGTTTGACCA 60.134 47.619 0.00 0.00 35.63 4.02
4751 5111 0.245266 TCACAGAAACGCGGCATCTA 59.755 50.000 12.47 0.00 0.00 1.98
4814 5195 7.550551 TGATCAAGCACAACTTCTATAAAGAGG 59.449 37.037 0.00 0.00 36.04 3.69
4844 5225 4.437390 GCTGCACAGACAACACCATATAAC 60.437 45.833 0.81 0.00 0.00 1.89
5060 5450 1.185618 ACAGAGCGGGCAGACTTACA 61.186 55.000 0.00 0.00 0.00 2.41
5132 5716 2.094258 GTGCACGATGTAATGAGTGGTG 59.906 50.000 0.00 0.00 33.69 4.17
5133 5717 2.289382 TGTGCACGATGTAATGAGTGGT 60.289 45.455 13.13 0.00 33.69 4.16
5147 5733 1.826327 CAAACCTGAAAGTGTGCACG 58.174 50.000 13.13 0.00 36.20 5.34
5198 5784 4.738124 TCTGATACTTCTTGAAGCACTCG 58.262 43.478 9.98 0.00 0.00 4.18
5420 6006 1.444553 CTCGGTTTTCGCGAGCTCT 60.445 57.895 9.59 0.00 39.05 4.09
5440 6026 4.644234 TGGTCTTTGCAAACTCATCAGAAA 59.356 37.500 8.05 0.00 0.00 2.52
5493 6079 0.608130 TTCTCAGGTGGTGACATCCG 59.392 55.000 0.00 0.00 44.96 4.18
5494 6080 2.814336 GTTTTCTCAGGTGGTGACATCC 59.186 50.000 0.00 0.00 44.96 3.51
5514 6100 2.753452 TCCTCGCTTCTTCGTCTATTGT 59.247 45.455 0.00 0.00 0.00 2.71
5516 6102 3.280295 TCTCCTCGCTTCTTCGTCTATT 58.720 45.455 0.00 0.00 0.00 1.73
5534 6120 1.853114 TACCGATCGCGCCATCTCTC 61.853 60.000 13.20 0.00 35.83 3.20
5678 6264 1.734465 GTCGTTCCTTCCTTGCTGATG 59.266 52.381 0.00 0.00 0.00 3.07
5751 6337 3.507622 GTGGAATTTTGGGAGGAAGTCAG 59.492 47.826 0.00 0.00 0.00 3.51
5770 6356 7.589958 AACTCTAGTCATATTCCTACTGTGG 57.410 40.000 0.00 0.00 0.00 4.17
5783 6369 7.390027 ACTGTATCAGCAAAAACTCTAGTCAT 58.610 34.615 0.00 0.00 34.37 3.06
5792 6378 8.690840 GTGTTTGATTACTGTATCAGCAAAAAC 58.309 33.333 7.43 7.43 36.03 2.43
5821 6407 3.501062 TCTTTCATTGAGAAGCAGCACTG 59.499 43.478 0.00 0.00 37.57 3.66
5869 6455 6.539649 TTCCTACTGTGAAAGTTTGATTCG 57.460 37.500 0.00 0.00 40.56 3.34
5969 6557 2.756760 CCATTCCACTCCAATCCACTTG 59.243 50.000 0.00 0.00 34.42 3.16
6038 6626 4.952335 GGTTTCATGACAAATGAGAGGGAT 59.048 41.667 0.00 0.00 0.00 3.85
6057 6645 5.722021 ATCTTTTAGGCATTGTTCGGTTT 57.278 34.783 0.00 0.00 0.00 3.27
6068 6656 9.838339 CTCTTATTAGAGGAAATCTTTTAGGCA 57.162 33.333 0.56 0.00 43.52 4.75
6128 6812 7.327214 AGAGGAAATCTTTCACTGAGATACAC 58.673 38.462 5.14 0.00 38.92 2.90
6154 6838 3.060602 GGTTCTCACGTTCTCCTTTGAG 58.939 50.000 0.00 0.00 40.17 3.02
6155 6839 2.698797 AGGTTCTCACGTTCTCCTTTGA 59.301 45.455 0.00 0.00 0.00 2.69
6156 6840 2.802816 CAGGTTCTCACGTTCTCCTTTG 59.197 50.000 0.00 0.00 0.00 2.77
6191 6875 8.719648 CAACTTTTCTCAGATATGATATCTGGC 58.280 37.037 31.35 2.27 44.15 4.85
6192 6876 9.775854 ACAACTTTTCTCAGATATGATATCTGG 57.224 33.333 31.35 24.03 44.15 3.86
6201 6888 6.128445 CGCTTGTCACAACTTTTCTCAGATAT 60.128 38.462 0.00 0.00 0.00 1.63
6202 6889 5.177511 CGCTTGTCACAACTTTTCTCAGATA 59.822 40.000 0.00 0.00 0.00 1.98
6203 6890 4.024556 CGCTTGTCACAACTTTTCTCAGAT 60.025 41.667 0.00 0.00 0.00 2.90
6285 6972 5.437289 TCAACTGTTGTAAAAGCTGATGG 57.563 39.130 19.12 0.00 0.00 3.51
6638 7328 2.188817 GTCCACAGATTCTACCCACCT 58.811 52.381 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.