AutoCloner

Multiple sequence alignment - TraesCS6A01G338300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G338300	chr6A	100.000	4858	0	0	1	4858	571855490	571850633	0.000000e+00	8972.0
1	TraesCS6A01G338300	chr6D	94.184	2115	66	18	1	2086	427156946	427154860	0.000000e+00	3171.0
2	TraesCS6A01G338300	chr6D	95.117	1065	26	9	2179	3243	427144418	427143380	0.000000e+00	1655.0
3	TraesCS6A01G338300	chr6D	96.229	875	24	2	3239	4113	427130378	427129513	0.000000e+00	1424.0
4	TraesCS6A01G338300	chr6D	94.785	441	20	1	4111	4551	427129417	427128980	0.000000e+00	684.0
5	TraesCS6A01G338300	chr6D	94.534	311	16	1	4549	4858	427128944	427128634	3.400000e-131	479.0
6	TraesCS6A01G338300	chr6B	95.088	1812	53	17	584	2387	642981059	642979276	0.000000e+00	2820.0
7	TraesCS6A01G338300	chr6B	96.149	1480	49	3	3076	4551	642976058	642974583	0.000000e+00	2410.0
8	TraesCS6A01G338300	chr6B	90.237	379	18	9	1	361	642981585	642981208	1.220000e-130	477.0
9	TraesCS6A01G338300	chr6B	86.916	321	14	4	4546	4858	642974550	642974250	7.790000e-88	335.0
10	TraesCS6A01G338300	chr5D	87.298	2102	193	42	2007	4053	398533003	398535085	0.000000e+00	2335.0
11	TraesCS6A01G338300	chr5D	81.078	909	109	38	658	1512	398531495	398532394	0.000000e+00	667.0
12	TraesCS6A01G338300	chr5D	77.705	305	33	19	5	281	398530803	398531100	2.340000e-33	154.0
13	TraesCS6A01G338300	chr5D	83.696	92	12	3	500	590	22585380	22585291	3.120000e-12	84.2
14	TraesCS6A01G338300	chr5B	87.291	2093	198	37	2010	4053	478484546	478486619	0.000000e+00	2329.0
15	TraesCS6A01G338300	chr5B	81.243	869	111	34	690	1512	478483070	478483932	0.000000e+00	654.0
16	TraesCS6A01G338300	chr5B	80.220	91	15	3	500	588	434914388	434914477	1.130000e-06	65.8
17	TraesCS6A01G338300	chr5A	87.054	2101	195	41	2007	4053	503525947	503528024	0.000000e+00	2302.0
18	TraesCS6A01G338300	chr5A	81.858	904	108	37	658	1512	503524476	503525372	0.000000e+00	710.0
19	TraesCS6A01G338300	chr5A	78.333	300	28	19	11	281	503523795	503524086	5.030000e-35	159.0
20	TraesCS6A01G338300	chr4D	89.706	68	7	0	500	567	61140840	61140773	2.410000e-13	87.9
21	TraesCS6A01G338300	chr1A	89.706	68	7	0	500	567	580638444	580638511	2.410000e-13	87.9
22	TraesCS6A01G338300	chr1A	85.366	82	9	3	500	580	426295170	426295091	1.120000e-11	82.4
23	TraesCS6A01G338300	chrUn	80.682	88	13	3	500	585	85398797	85398712	1.130000e-06	65.8
24	TraesCS6A01G338300	chrUn	80.682	88	13	3	500	585	242418328	242418413	1.130000e-06	65.8
25	TraesCS6A01G338300	chr3B	79.121	91	16	3	500	589	201872164	201872252	5.250000e-05	60.2
26	TraesCS6A01G338300	chr7B	100.000	29	0	0	559	587	699845004	699845032	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G338300	chr6A	571850633	571855490	4857	True	8972.000000	8972	100.000000	1	4858	1	chr6A.!!$R1	4857
1	TraesCS6A01G338300	chr6D	427154860	427156946	2086	True	3171.000000	3171	94.184000	1	2086	1	chr6D.!!$R2	2085
2	TraesCS6A01G338300	chr6D	427143380	427144418	1038	True	1655.000000	1655	95.117000	2179	3243	1	chr6D.!!$R1	1064
3	TraesCS6A01G338300	chr6D	427128634	427130378	1744	True	862.333333	1424	95.182667	3239	4858	3	chr6D.!!$R3	1619
4	TraesCS6A01G338300	chr6B	642974250	642981585	7335	True	1510.500000	2820	92.097500	1	4858	4	chr6B.!!$R1	4857
5	TraesCS6A01G338300	chr5D	398530803	398535085	4282	False	1052.000000	2335	82.027000	5	4053	3	chr5D.!!$F1	4048
6	TraesCS6A01G338300	chr5B	478483070	478486619	3549	False	1491.500000	2329	84.267000	690	4053	2	chr5B.!!$F2	3363
7	TraesCS6A01G338300	chr5A	503523795	503528024	4229	False	1057.000000	2302	82.415000	11	4053	3	chr5A.!!$F1	4042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
308	349	0.252742	TCCCCTCCTCTTCCACTTCC	60.253	60.0	0.00	0.00	3.46	F
1432	1711	0.746063	CAAGGTGCACAAAAGCCTGA	59.254	50.0	20.43	0.00	3.86	F
2551	4597	0.744874	TCCTGCTCGGAGATTAACGG	59.255	55.0	9.69	36.69	4.44	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1914	2226	0.504384	CACGACTGCAGTTGTCTTCG	59.496	55.0	32.65	25.19	40.52	3.79	R
2775	5965	0.109412	GGCAGCATGAACAACTCAGC	60.109	55.0	0.00	0.00	39.69	4.26	R
3938	7170	0.942962	GCCATTCTTGGATCGCAGAG	59.057	55.0	0.00	0.00	46.92	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
180	203	4.460683	GTATGTGGCGGTGGGCGA	62.461	66.667	0.00	0.00	44.92	5.54
301	342	1.753368	CGCCTCATCCCCTCCTCTTC	61.753	65.000	0.00	0.00	0.00	2.87
308	349	0.252742	TCCCCTCCTCTTCCACTTCC	60.253	60.000	0.00	0.00	0.00	3.46
346	387	9.271828	TCTTTCCTTTTTGCTTTAATTTGGATC	57.728	29.630	0.00	0.00	0.00	3.36
424	637	5.048504	ACTGAACAGCATAAACAAGACATGG	60.049	40.000	0.00	0.00	0.00	3.66
427	640	4.917385	ACAGCATAAACAAGACATGGGTA	58.083	39.130	0.00	0.00	0.00	3.69
448	661	7.051623	GGGTAATTATTACACTGACATGGTCA	58.948	38.462	15.80	0.00	37.78	4.02
449	662	7.554835	GGGTAATTATTACACTGACATGGTCAA	59.445	37.037	15.80	0.00	38.73	3.18
450	663	9.120538	GGTAATTATTACACTGACATGGTCAAT	57.879	33.333	15.80	0.00	38.73	2.57
452	665	7.807977	ATTATTACACTGACATGGTCAATCC	57.192	36.000	0.00	0.00	42.26	3.01
675	888	5.238432	TGCTGATAGTAAATTATGGTTGCGG	59.762	40.000	0.00	0.00	0.00	5.69
701	914	6.426587	AGTTAATACCTCCAATGCTGTTCAT	58.573	36.000	0.00	0.00	36.87	2.57
853	1077	3.461061	ACATATCAGACACCAGAATGCG	58.539	45.455	0.00	0.00	31.97	4.73
865	1089	4.690748	CACCAGAATGCGAAGAAAACTAGA	59.309	41.667	0.00	0.00	31.97	2.43
1385	1664	2.920524	TCTCTCTACACTAGGAAGGCG	58.079	52.381	0.00	0.00	0.00	5.52
1432	1711	0.746063	CAAGGTGCACAAAAGCCTGA	59.254	50.000	20.43	0.00	0.00	3.86
1475	1754	6.552725	TGGATAGATCAACTAGCTTGTCAGAT	59.447	38.462	13.29	13.29	37.60	2.90
1546	1852	4.497300	TCCGACGGTAATGAAAAGGTAAG	58.503	43.478	14.79	0.00	0.00	2.34
1613	1919	4.947388	AGCAGTTACACTTCAAGGAACAAA	59.053	37.500	0.00	0.00	0.00	2.83
1614	1920	5.066505	AGCAGTTACACTTCAAGGAACAAAG	59.933	40.000	0.00	0.00	0.00	2.77
1615	1921	5.065988	GCAGTTACACTTCAAGGAACAAAGA	59.934	40.000	0.00	0.00	0.00	2.52
1747	2054	6.862469	ATGTGGTCCATGATGAAGAATTTT	57.138	33.333	0.00	0.00	30.69	1.82
1860	2172	2.386661	ACGAATTTGACGAGGCTGAT	57.613	45.000	0.00	0.00	34.70	2.90
1863	2175	3.617263	ACGAATTTGACGAGGCTGATAAC	59.383	43.478	0.00	0.00	34.70	1.89
1914	2226	6.482308	TGGAGAGTGTAAGAAAACAAGCTTAC	59.518	38.462	0.00	0.00	44.11	2.34
2159	2656	8.970859	TTTGTAAACAATTTTGGATCCATTGT	57.029	26.923	21.43	21.43	37.08	2.71
2160	2657	8.970859	TTGTAAACAATTTTGGATCCATTGTT	57.029	26.923	27.88	27.88	44.33	2.83
2400	2897	6.012745	AGATTAGCCATGGAGAAAACAACTT	58.987	36.000	18.40	0.00	0.00	2.66
2408	2905	4.541705	TGGAGAAAACAACTTCCCATTCA	58.458	39.130	0.00	0.00	0.00	2.57
2450	4222	2.515757	TTGCAGCGTGACAAGGCA	60.516	55.556	2.95	0.00	39.70	4.75
2551	4597	0.744874	TCCTGCTCGGAGATTAACGG	59.255	55.000	9.69	0.00	36.69	4.44
2752	5942	4.067896	TCTTTCATCTCAACTGAACTGGC	58.932	43.478	0.00	0.00	32.57	4.85
2754	5944	3.490439	TCATCTCAACTGAACTGGCAA	57.510	42.857	0.00	0.00	0.00	4.52
2757	5947	4.456911	TCATCTCAACTGAACTGGCAATTC	59.543	41.667	0.94	0.94	0.00	2.17
2761	5951	1.609208	ACTGAACTGGCAATTCGCTT	58.391	45.000	4.07	0.00	41.91	4.68
2762	5952	1.537202	ACTGAACTGGCAATTCGCTTC	59.463	47.619	4.07	0.00	41.91	3.86
2775	5965	7.148606	TGGCAATTCGCTTCTTCAAATAAATTG	60.149	33.333	0.00	0.00	41.91	2.32
2825	6030	4.344679	CAGATAGAGATTCTCAGCAGGGTT	59.655	45.833	15.83	0.00	32.06	4.11
3044	6249	1.143684	AGCATTGTCCACAGTGACCTT	59.856	47.619	0.62	0.00	35.88	3.50
3052	6257	3.821033	GTCCACAGTGACCTTAAAGCATT	59.179	43.478	0.62	0.00	0.00	3.56
3074	6279	7.148689	GCATTGAACATTCTTCTTGATGGAAAC	60.149	37.037	0.00	0.00	0.00	2.78
3254	6459	4.913335	ATACTCTTTCGGAATCGTGCTA	57.087	40.909	0.00	0.00	37.69	3.49
3263	6468	1.079127	AATCGTGCTACTGCGCCTT	60.079	52.632	4.18	0.00	46.08	4.35
3444	6649	4.643387	ACCGCCCTGACCTGCAAC	62.643	66.667	0.00	0.00	0.00	4.17
3494	6699	7.121759	CCAATGTTGAAGTCTAGTTCCATCATT	59.878	37.037	0.00	0.00	0.00	2.57
3783	7015	3.410631	TTCACCCTTGCATTTCTACGA	57.589	42.857	0.00	0.00	0.00	3.43
3857	7089	1.687123	GCCGAAGCTATAAGGGAGTGA	59.313	52.381	0.00	0.00	35.50	3.41
3896	7128	5.240183	CCATACATCACCCATGACAAATCTC	59.760	44.000	0.00	0.00	37.79	2.75
3909	7141	3.093057	ACAAATCTCGAGCTACTCCACT	58.907	45.455	7.81	0.00	0.00	4.00
4158	7489	6.908284	TCTTGAGCAAAACGTGTATGTAAAAC	59.092	34.615	0.00	0.00	0.00	2.43
4160	7491	6.552629	TGAGCAAAACGTGTATGTAAAACAA	58.447	32.000	0.00	0.00	0.00	2.83
4239	7570	9.520515	AAGTGAAAACTGTTTAGGTGATGATAT	57.479	29.630	6.16	0.00	0.00	1.63
4291	7622	7.953005	TGAACAATCAATATTGGTGTGGTAT	57.047	32.000	19.86	9.35	43.20	2.73
4320	7651	3.193263	CCTCTGAATGTCGATGTTCCAG	58.807	50.000	9.40	4.91	0.00	3.86
4321	7652	3.193263	CTCTGAATGTCGATGTTCCAGG	58.807	50.000	9.40	0.00	0.00	4.45
4322	7653	2.831526	TCTGAATGTCGATGTTCCAGGA	59.168	45.455	9.40	0.00	0.00	3.86
4529	7860	4.825422	TCTTGTCAATGACACAGATCCTC	58.175	43.478	16.50	0.00	42.60	3.71
4560	7929	9.535878	TTGAACAATACCAAATTCAAAAGGTAC	57.464	29.630	0.00	0.00	39.25	3.34
4575	7944	2.100989	AGGTACGATGTCCTTGTCTCC	58.899	52.381	0.00	0.00	0.00	3.71
4576	7945	1.822990	GGTACGATGTCCTTGTCTCCA	59.177	52.381	0.00	0.00	0.00	3.86
4593	7962	4.081406	TCTCCAATGACTGACCAAATTGG	58.919	43.478	11.02	11.02	46.91	3.16
4715	8093	7.765695	TTTTAGCAAGAGTCCAATTCATCTT	57.234	32.000	0.00	0.00	32.31	2.40
4728	8106	8.127327	GTCCAATTCATCTTTGACATATCACTG	58.873	37.037	0.00	0.00	33.38	3.66
4769	8147	1.602327	AACCTACCTTCCGGTCGCTC	61.602	60.000	0.00	0.00	44.21	5.03
4789	8167	2.043115	TCTGTCCTCACACTGGGATACT	59.957	50.000	0.00	0.00	33.89	2.12
4842	8220	2.766313	CACTTCCGTCCAAATGAGTCA	58.234	47.619	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	2.435059	GACTTGTCCCCTGCGCTC	60.435	66.667	9.73	0.00	0.00	5.03
126	146	1.152139	GAGGAGGAGGGGGAGGATG	60.152	68.421	0.00	0.00	0.00	3.51
180	203	2.045926	GCACCATCGCCTTGGACT	60.046	61.111	6.58	0.00	39.25	3.85
301	342	6.461648	GGAAAGAAAAGAAAGAAGGGAAGTGG	60.462	42.308	0.00	0.00	0.00	4.00
308	349	7.550551	AGCAAAAAGGAAAGAAAAGAAAGAAGG	59.449	33.333	0.00	0.00	0.00	3.46
346	387	6.211515	ACAAAGCTGCATAAAAGAACTTCTG	58.788	36.000	1.02	0.00	0.00	3.02
401	614	5.396484	CCATGTCTTGTTTATGCTGTTCAG	58.604	41.667	0.00	0.00	0.00	3.02
424	637	8.500753	TTGACCATGTCAGTGTAATAATTACC	57.499	34.615	0.00	0.00	43.69	2.85
427	640	7.833682	TGGATTGACCATGTCAGTGTAATAATT	59.166	33.333	0.00	0.00	43.69	1.40
448	661	8.964476	ATTTGTAGAGATAATTGACGTGGATT	57.036	30.769	0.00	0.00	0.00	3.01
449	662	8.964476	AATTTGTAGAGATAATTGACGTGGAT	57.036	30.769	0.00	0.00	0.00	3.41
450	663	8.786826	AAATTTGTAGAGATAATTGACGTGGA	57.213	30.769	0.00	0.00	0.00	4.02
675	888	6.374333	TGAACAGCATTGGAGGTATTAACTTC	59.626	38.462	0.00	0.00	0.00	3.01
701	914	1.692749	GGGATCCTGGCACCCACTA	60.693	63.158	12.58	0.00	42.81	2.74
1284	1542	2.936919	ACACAAGTGAAGAGCATCCA	57.063	45.000	7.28	0.00	33.66	3.41
1432	1711	3.554934	TCCACTGAAAACTGTTGAGCAT	58.445	40.909	0.00	0.00	0.00	3.79
1475	1754	6.571344	GCCATGTATTTGAAACACACCACATA	60.571	38.462	0.00	0.00	0.00	2.29
1613	1919	8.977267	AGAATATAAATGAAGCAGCTTCTTCT	57.023	30.769	30.82	24.88	42.15	2.85
1614	1920	8.288913	GGAGAATATAAATGAAGCAGCTTCTTC	58.711	37.037	30.82	23.41	40.73	2.87
1615	1921	7.776969	TGGAGAATATAAATGAAGCAGCTTCTT	59.223	33.333	30.82	23.67	40.73	2.52
1667	1973	6.017440	TCAGTGACCATACAAAGTTTAAGTGC	60.017	38.462	0.00	0.00	0.00	4.40
1814	2126	3.519913	AGTTTCCTGGGTGAGATAAGGTC	59.480	47.826	0.00	0.00	0.00	3.85
1883	2195	5.130477	TGTTTTCTTACACTCTCCAACTCCT	59.870	40.000	0.00	0.00	0.00	3.69
1914	2226	0.504384	CACGACTGCAGTTGTCTTCG	59.496	55.000	32.65	25.19	40.52	3.79
1990	2302	6.808008	ATACTTGACATGACTGAAAAGTGG	57.192	37.500	0.00	0.00	35.10	4.00
1993	2305	8.763049	TCAGTATACTTGACATGACTGAAAAG	57.237	34.615	1.56	0.00	40.11	2.27
2102	2599	5.814481	TGATGATGGTAAAGTTGGTGATGA	58.186	37.500	0.00	0.00	0.00	2.92
2245	2742	4.799428	GCTTCACTTCTCCGAAGTACATAC	59.201	45.833	8.75	0.00	40.63	2.39
2400	2897	5.221641	CCTTGATAATACGGTCTGAATGGGA	60.222	44.000	0.00	0.00	0.00	4.37
2450	4222	5.817784	TGTAGTGCTTCTACCTCTCTTACT	58.182	41.667	13.89	0.00	45.99	2.24
2551	4597	2.165437	TGGTCAAAGTTGTTGGTTGCTC	59.835	45.455	0.00	0.00	0.00	4.26
2752	5942	7.896274	CAGCAATTTATTTGAAGAAGCGAATTG	59.104	33.333	0.00	0.00	37.53	2.32
2754	5944	7.315142	TCAGCAATTTATTTGAAGAAGCGAAT	58.685	30.769	0.00	0.00	37.53	3.34
2757	5947	6.088824	ACTCAGCAATTTATTTGAAGAAGCG	58.911	36.000	0.00	0.00	37.53	4.68
2761	5951	8.412456	TGAACAACTCAGCAATTTATTTGAAGA	58.588	29.630	0.00	0.00	37.53	2.87
2762	5952	8.578308	TGAACAACTCAGCAATTTATTTGAAG	57.422	30.769	0.00	0.00	37.53	3.02
2775	5965	0.109412	GGCAGCATGAACAACTCAGC	60.109	55.000	0.00	0.00	39.69	4.26
3044	6249	8.030692	CCATCAAGAAGAATGTTCAATGCTTTA	58.969	33.333	0.00	0.00	0.00	1.85
3052	6257	6.957920	TGTTTCCATCAAGAAGAATGTTCA	57.042	33.333	0.00	0.00	0.00	3.18
3074	6279	2.816087	ACCACTGAGCTTTGCTACATTG	59.184	45.455	0.00	0.00	39.88	2.82
3254	6459	0.465460	TTCCAGTCAAAAGGCGCAGT	60.465	50.000	10.83	0.00	0.00	4.40
3431	6636	3.612247	CTCCGGTTGCAGGTCAGGG	62.612	68.421	0.00	0.00	0.00	4.45
3444	6649	0.974383	AGTACAGTCCAAACCTCCGG	59.026	55.000	0.00	0.00	0.00	5.14
3783	7015	2.239150	GCTCCCTCATGATATCCTGCAT	59.761	50.000	0.00	0.00	0.00	3.96
3857	7089	3.439154	TGTATGGTGGCCATTGTCAATT	58.561	40.909	9.72	0.00	42.23	2.32
3896	7128	2.020720	AGATCACAGTGGAGTAGCTCG	58.979	52.381	0.00	0.00	0.00	5.03
3909	7141	1.974265	TGGTTCGGCAAAAGATCACA	58.026	45.000	0.00	0.00	0.00	3.58
3938	7170	0.942962	GCCATTCTTGGATCGCAGAG	59.057	55.000	0.00	0.00	46.92	3.35
4239	7570	1.302351	TGTGCACATGCGATGGTGA	60.302	52.632	17.42	0.00	45.83	4.02
4291	7622	2.027285	TCGACATTCAGAGGCCAATCAA	60.027	45.455	5.01	0.00	0.00	2.57
4295	7626	1.278985	ACATCGACATTCAGAGGCCAA	59.721	47.619	5.01	0.00	0.00	4.52
4320	7651	5.919141	GCTGATATGCACTTTTCATTCATCC	59.081	40.000	0.00	0.00	0.00	3.51
4321	7652	6.500910	TGCTGATATGCACTTTTCATTCATC	58.499	36.000	0.00	0.00	38.12	2.92
4322	7653	6.459670	TGCTGATATGCACTTTTCATTCAT	57.540	33.333	0.00	0.00	38.12	2.57
4368	7699	9.051679	TGTAAAATGACACTGTACCATATATGC	57.948	33.333	7.24	0.00	0.00	3.14
4377	7708	9.755064	GATGTAACATGTAAAATGACACTGTAC	57.245	33.333	0.00	0.00	30.52	2.90
4428	7759	5.299531	ACTTTCGGAATAGACAGATCGATGA	59.700	40.000	0.54	0.00	0.00	2.92
4505	7836	5.624159	AGGATCTGTGTCATTGACAAGAAA	58.376	37.500	20.57	7.78	44.49	2.52
4506	7837	5.233083	AGGATCTGTGTCATTGACAAGAA	57.767	39.130	20.57	9.44	44.49	2.52
4529	7860	5.524284	TGAATTTGGTATTGTTCAACACGG	58.476	37.500	0.00	0.00	0.00	4.94
4575	7944	3.581755	CTGCCAATTTGGTCAGTCATTG	58.418	45.455	21.80	0.79	40.46	2.82
4576	7945	2.028748	GCTGCCAATTTGGTCAGTCATT	60.029	45.455	26.45	0.00	40.96	2.57
4593	7962	8.616076	GGACCAATATATAATAGATTGTGCTGC	58.384	37.037	0.00	0.00	36.04	5.25
4629	7999	3.826524	TGAAGTTTCATGCTGGTTACCA	58.173	40.909	3.29	3.29	31.01	3.25
4715	8093	4.528206	AGTCCTGACACAGTGATATGTCAA	59.472	41.667	7.81	1.03	40.23	3.18
4728	8106	2.234908	AGGAAGTATGCAGTCCTGACAC	59.765	50.000	9.55	0.00	40.37	3.67
4769	8147	2.167281	CAGTATCCCAGTGTGAGGACAG	59.833	54.545	0.00	0.00	34.20	3.51
4789	8167	2.877097	TGCAGGCTTTCAGGAATACA	57.123	45.000	0.00	0.00	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.